Multiple sequence alignment - TraesCS1D01G377300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G377300 chr1D 100.000 2150 0 0 1 2150 453552334 453554483 0.000000e+00 3971
1 TraesCS1D01G377300 chr1D 84.291 853 61 34 629 1442 453570755 453571573 0.000000e+00 765
2 TraesCS1D01G377300 chr1D 89.831 177 12 2 963 1139 453269090 453269260 2.780000e-54 222
3 TraesCS1D01G377300 chr1D 83.251 203 28 5 934 1136 453238630 453238826 4.710000e-42 182
4 TraesCS1D01G377300 chr1B 85.566 1441 87 44 25 1421 623988287 623989650 0.000000e+00 1397
5 TraesCS1D01G377300 chr1B 82.905 895 73 31 616 1473 624015945 624016796 0.000000e+00 732
6 TraesCS1D01G377300 chr1B 89.266 177 13 2 963 1139 623722455 623722625 1.290000e-52 217
7 TraesCS1D01G377300 chr1A 87.248 1090 52 36 426 1475 548443620 548444662 0.000000e+00 1162
8 TraesCS1D01G377300 chr1A 84.050 721 64 23 747 1439 548452671 548453368 0.000000e+00 647
9 TraesCS1D01G377300 chr1A 91.573 178 14 1 963 1139 547959005 547959182 5.930000e-61 244
10 TraesCS1D01G377300 chr1A 91.111 180 13 3 9 188 548443078 548443254 7.670000e-60 241
11 TraesCS1D01G377300 chr1A 95.238 147 7 0 993 1139 547977973 547978119 1.280000e-57 233
12 TraesCS1D01G377300 chr1A 93.684 95 6 0 198 292 548443451 548443545 2.220000e-30 143
13 TraesCS1D01G377300 chr3B 90.072 554 38 9 1476 2022 556495141 556494598 0.000000e+00 702
14 TraesCS1D01G377300 chr3B 87.614 549 59 5 1475 2022 33094129 33094669 1.400000e-176 628
15 TraesCS1D01G377300 chr3B 86.176 557 69 5 1465 2021 302368975 302369523 1.420000e-166 595
16 TraesCS1D01G377300 chr7D 88.707 549 53 5 1476 2022 299588872 299588331 0.000000e+00 662
17 TraesCS1D01G377300 chr3A 87.569 547 62 3 1476 2022 697511794 697511254 1.400000e-176 628
18 TraesCS1D01G377300 chr5A 87.020 547 62 5 1478 2022 551192365 551192904 1.820000e-170 608
19 TraesCS1D01G377300 chr6D 86.000 550 65 7 1476 2022 472495532 472494992 1.430000e-161 579
20 TraesCS1D01G377300 chr5D 86.157 549 61 7 1475 2022 413445807 413446341 1.430000e-161 579
21 TraesCS1D01G377300 chr2D 85.949 548 66 8 1476 2022 510225441 510225978 1.850000e-160 575
22 TraesCS1D01G377300 chr3D 91.270 126 8 1 29 154 5227824 5227946 3.670000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G377300 chr1D 453552334 453554483 2149 False 3971.000000 3971 100.000 1 2150 1 chr1D.!!$F3 2149
1 TraesCS1D01G377300 chr1D 453570755 453571573 818 False 765.000000 765 84.291 629 1442 1 chr1D.!!$F4 813
2 TraesCS1D01G377300 chr1B 623988287 623989650 1363 False 1397.000000 1397 85.566 25 1421 1 chr1B.!!$F2 1396
3 TraesCS1D01G377300 chr1B 624015945 624016796 851 False 732.000000 732 82.905 616 1473 1 chr1B.!!$F3 857
4 TraesCS1D01G377300 chr1A 548452671 548453368 697 False 647.000000 647 84.050 747 1439 1 chr1A.!!$F3 692
5 TraesCS1D01G377300 chr1A 548443078 548444662 1584 False 515.333333 1162 90.681 9 1475 3 chr1A.!!$F4 1466
6 TraesCS1D01G377300 chr3B 556494598 556495141 543 True 702.000000 702 90.072 1476 2022 1 chr3B.!!$R1 546
7 TraesCS1D01G377300 chr3B 33094129 33094669 540 False 628.000000 628 87.614 1475 2022 1 chr3B.!!$F1 547
8 TraesCS1D01G377300 chr3B 302368975 302369523 548 False 595.000000 595 86.176 1465 2021 1 chr3B.!!$F2 556
9 TraesCS1D01G377300 chr7D 299588331 299588872 541 True 662.000000 662 88.707 1476 2022 1 chr7D.!!$R1 546
10 TraesCS1D01G377300 chr3A 697511254 697511794 540 True 628.000000 628 87.569 1476 2022 1 chr3A.!!$R1 546
11 TraesCS1D01G377300 chr5A 551192365 551192904 539 False 608.000000 608 87.020 1478 2022 1 chr5A.!!$F1 544
12 TraesCS1D01G377300 chr6D 472494992 472495532 540 True 579.000000 579 86.000 1476 2022 1 chr6D.!!$R1 546
13 TraesCS1D01G377300 chr5D 413445807 413446341 534 False 579.000000 579 86.157 1475 2022 1 chr5D.!!$F1 547
14 TraesCS1D01G377300 chr2D 510225441 510225978 537 False 575.000000 575 85.949 1476 2022 1 chr2D.!!$F1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 774 0.396435 AACTGGACGTGCATCTGGAA 59.604 50.0 11.16 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2420 0.478507 AAGAACACTCCCCAAGGGTG 59.521 55.0 4.11 0.82 42.32 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
133 134 2.546373 GGCAAATGCATGTGACACTTGT 60.546 45.455 21.46 1.92 44.36 3.16
147 148 3.165071 ACACTTGTGATTTCATTCCCCC 58.835 45.455 7.83 0.00 0.00 5.40
168 169 2.262471 GATCGCCGTACCGTCACACT 62.262 60.000 0.00 0.00 0.00 3.55
198 383 0.614979 ACGGGATGTACTGCACCTCT 60.615 55.000 0.00 0.00 0.00 3.69
200 385 1.195115 GGGATGTACTGCACCTCTCA 58.805 55.000 0.00 0.00 0.00 3.27
201 386 1.134670 GGGATGTACTGCACCTCTCAC 60.135 57.143 0.00 0.00 0.00 3.51
202 387 1.827969 GGATGTACTGCACCTCTCACT 59.172 52.381 0.00 0.00 0.00 3.41
315 505 2.229543 TGTGTGTACTACTAACGGGCAG 59.770 50.000 0.00 0.00 0.00 4.85
327 517 1.195115 ACGGGCAGCTAGATGAAAGA 58.805 50.000 13.26 0.00 0.00 2.52
345 535 7.834068 TGAAAGAATTATTCCGTGAAGAGAG 57.166 36.000 0.78 0.00 0.00 3.20
352 542 3.386768 TTCCGTGAAGAGAGAAACCAG 57.613 47.619 0.00 0.00 0.00 4.00
438 633 1.069703 CGACACAAACAGGAGCACATG 60.070 52.381 0.00 0.00 0.00 3.21
464 659 6.938776 TATATAACCGCGAGATCCGACCGA 62.939 50.000 8.23 0.00 41.76 4.69
465 660 4.609247 CCGCGAGATCCGACCGAC 62.609 72.222 8.23 0.00 41.76 4.79
467 662 3.515286 GCGAGATCCGACCGACCA 61.515 66.667 7.64 0.00 41.76 4.02
469 664 1.818363 CGAGATCCGACCGACCAGA 60.818 63.158 0.00 0.00 41.76 3.86
470 665 1.728672 GAGATCCGACCGACCAGAC 59.271 63.158 0.00 0.00 0.00 3.51
471 666 1.001269 AGATCCGACCGACCAGACA 60.001 57.895 0.00 0.00 0.00 3.41
472 667 1.032657 AGATCCGACCGACCAGACAG 61.033 60.000 0.00 0.00 0.00 3.51
473 668 1.304217 ATCCGACCGACCAGACAGT 60.304 57.895 0.00 0.00 0.00 3.55
575 774 0.396435 AACTGGACGTGCATCTGGAA 59.604 50.000 11.16 0.00 0.00 3.53
581 780 2.476051 GTGCATCTGGAACACGCG 59.524 61.111 3.53 3.53 0.00 6.01
582 781 2.741985 TGCATCTGGAACACGCGG 60.742 61.111 12.47 1.27 0.00 6.46
583 782 4.166011 GCATCTGGAACACGCGGC 62.166 66.667 12.47 0.00 0.00 6.53
584 783 3.499737 CATCTGGAACACGCGGCC 61.500 66.667 12.47 6.85 0.00 6.13
1012 1251 1.407258 AGCTCGAGATGGAGTACAAGC 59.593 52.381 18.75 0.00 36.41 4.01
1019 1258 4.380973 CGAGATGGAGTACAAGCTGAAGAA 60.381 45.833 0.00 0.00 0.00 2.52
1057 1311 1.203415 GGGGAGGATCAGGATCAGGAT 60.203 57.143 11.12 0.00 39.54 3.24
1058 1312 2.187100 GGGAGGATCAGGATCAGGATC 58.813 57.143 14.33 14.33 39.54 3.36
1059 1313 2.494250 GGGAGGATCAGGATCAGGATCA 60.494 54.545 20.75 0.00 41.30 2.92
1060 1314 2.833338 GGAGGATCAGGATCAGGATCAG 59.167 54.545 20.75 3.64 41.30 2.90
1061 1315 2.833338 GAGGATCAGGATCAGGATCAGG 59.167 54.545 20.75 2.97 41.30 3.86
1062 1316 2.453991 AGGATCAGGATCAGGATCAGGA 59.546 50.000 20.75 7.82 41.30 3.86
1069 1323 0.767446 ATCAGGATCAGGAGGGCTGG 60.767 60.000 0.00 0.00 0.00 4.85
1158 1419 1.781786 ACCACGACTAGCAGATCCAT 58.218 50.000 0.00 0.00 0.00 3.41
1206 1475 4.200874 TCTAGCTAGGCTTGACAGACTAC 58.799 47.826 20.58 0.00 40.01 2.73
1221 1502 2.823154 AGACTACTTCTCTGGAGTGTGC 59.177 50.000 0.00 0.00 0.00 4.57
1222 1503 1.542030 ACTACTTCTCTGGAGTGTGCG 59.458 52.381 0.00 0.00 0.00 5.34
1223 1504 1.542030 CTACTTCTCTGGAGTGTGCGT 59.458 52.381 0.00 0.00 0.00 5.24
1224 1505 0.032678 ACTTCTCTGGAGTGTGCGTG 59.967 55.000 0.00 0.00 0.00 5.34
1225 1506 0.032678 CTTCTCTGGAGTGTGCGTGT 59.967 55.000 0.00 0.00 0.00 4.49
1226 1507 0.249447 TTCTCTGGAGTGTGCGTGTG 60.249 55.000 0.00 0.00 0.00 3.82
1227 1508 1.068083 CTCTGGAGTGTGCGTGTGT 59.932 57.895 0.00 0.00 0.00 3.72
1228 1509 1.217585 CTCTGGAGTGTGCGTGTGTG 61.218 60.000 0.00 0.00 0.00 3.82
1229 1510 1.521457 CTGGAGTGTGCGTGTGTGT 60.521 57.895 0.00 0.00 0.00 3.72
1230 1511 0.249280 CTGGAGTGTGCGTGTGTGTA 60.249 55.000 0.00 0.00 0.00 2.90
1231 1512 0.528901 TGGAGTGTGCGTGTGTGTAC 60.529 55.000 0.00 0.00 0.00 2.90
1232 1513 0.528901 GGAGTGTGCGTGTGTGTACA 60.529 55.000 0.00 0.00 31.80 2.90
1233 1514 1.497991 GAGTGTGCGTGTGTGTACAT 58.502 50.000 0.00 0.00 39.39 2.29
1234 1515 2.608506 GGAGTGTGCGTGTGTGTACATA 60.609 50.000 0.00 0.00 39.39 2.29
1235 1516 2.661675 GAGTGTGCGTGTGTGTACATAG 59.338 50.000 0.00 0.00 39.39 2.23
1236 1517 2.295070 AGTGTGCGTGTGTGTACATAGA 59.705 45.455 0.00 0.00 39.39 1.98
1237 1518 2.661675 GTGTGCGTGTGTGTACATAGAG 59.338 50.000 0.00 0.00 39.39 2.43
1238 1519 2.295070 TGTGCGTGTGTGTACATAGAGT 59.705 45.455 0.00 0.00 39.39 3.24
1239 1520 2.915463 GTGCGTGTGTGTACATAGAGTC 59.085 50.000 0.00 0.00 39.39 3.36
1240 1521 2.554893 TGCGTGTGTGTACATAGAGTCA 59.445 45.455 0.00 0.00 39.39 3.41
1241 1522 3.192633 TGCGTGTGTGTACATAGAGTCAT 59.807 43.478 0.00 0.00 39.39 3.06
1242 1523 4.396790 TGCGTGTGTGTACATAGAGTCATA 59.603 41.667 0.00 0.00 39.39 2.15
1243 1524 4.970611 GCGTGTGTGTACATAGAGTCATAG 59.029 45.833 0.00 0.00 39.39 2.23
1257 1538 9.303116 CATAGAGTCATAGACATAGGGTAGTTT 57.697 37.037 0.00 0.00 34.60 2.66
1269 1556 7.838884 ACATAGGGTAGTTTAGAAGTTCTGTC 58.161 38.462 15.90 5.78 0.00 3.51
1316 1608 3.513515 AGTTTTGGTGTGATGTGGTTTGT 59.486 39.130 0.00 0.00 0.00 2.83
1319 1616 2.451490 TGGTGTGATGTGGTTTGTTGT 58.549 42.857 0.00 0.00 0.00 3.32
1359 1656 2.737544 TGGCAAGGATGTGCATGTATT 58.262 42.857 0.00 0.00 46.81 1.89
1441 1738 8.796475 TGAAAGATCTCGGAAAATGAAAGAAAT 58.204 29.630 0.00 0.00 0.00 2.17
1442 1739 9.283420 GAAAGATCTCGGAAAATGAAAGAAATC 57.717 33.333 0.00 0.00 0.00 2.17
1444 1741 7.983307 AGATCTCGGAAAATGAAAGAAATCAG 58.017 34.615 0.00 0.00 31.76 2.90
1445 1742 5.942872 TCTCGGAAAATGAAAGAAATCAGC 58.057 37.500 0.00 0.00 31.76 4.26
1455 1752 5.060506 TGAAAGAAATCAGCGTGGAAGTTA 58.939 37.500 0.00 0.00 0.00 2.24
1460 1757 5.705441 AGAAATCAGCGTGGAAGTTATCAAA 59.295 36.000 0.00 0.00 0.00 2.69
1488 1789 5.644206 GGTTTATCTCTCGAAAAAGGCTTCT 59.356 40.000 0.00 0.00 0.00 2.85
1527 1829 1.514678 GCAACGATCACCAACAGCCA 61.515 55.000 0.00 0.00 0.00 4.75
1528 1830 0.238289 CAACGATCACCAACAGCCAC 59.762 55.000 0.00 0.00 0.00 5.01
1533 1835 1.665679 GATCACCAACAGCCACATACG 59.334 52.381 0.00 0.00 0.00 3.06
1539 1841 2.284150 CCAACAGCCACATACGAATACG 59.716 50.000 0.00 0.00 45.75 3.06
1649 1951 0.661552 ATACGACGATCCGTGGACTG 59.338 55.000 0.00 0.00 41.37 3.51
1684 1986 2.559668 TCAGAAAGAATACGACACCGGT 59.440 45.455 0.00 0.00 40.78 5.28
1742 2045 2.022129 GGAGCAACACGACGGACAG 61.022 63.158 0.00 0.00 0.00 3.51
1812 2122 3.181485 CCTGTCTGTCCGAAGATAGAACC 60.181 52.174 7.67 0.00 41.36 3.62
2022 2332 1.073284 GCTACCCCAACCAAAGAGACA 59.927 52.381 0.00 0.00 0.00 3.41
2023 2333 2.488347 GCTACCCCAACCAAAGAGACAA 60.488 50.000 0.00 0.00 0.00 3.18
2024 2334 3.814316 GCTACCCCAACCAAAGAGACAAT 60.814 47.826 0.00 0.00 0.00 2.71
2025 2335 2.876581 ACCCCAACCAAAGAGACAATC 58.123 47.619 0.00 0.00 0.00 2.67
2026 2336 2.447047 ACCCCAACCAAAGAGACAATCT 59.553 45.455 0.00 0.00 41.27 2.40
2027 2337 3.084786 CCCCAACCAAAGAGACAATCTC 58.915 50.000 0.00 0.00 43.70 2.75
2037 2347 2.570135 GAGACAATCTCTTGGCATCCC 58.430 52.381 0.00 0.00 43.39 3.85
2038 2348 1.918262 AGACAATCTCTTGGCATCCCA 59.082 47.619 0.00 0.00 43.39 4.37
2039 2349 2.512896 AGACAATCTCTTGGCATCCCAT 59.487 45.455 0.00 0.00 43.39 4.00
2040 2350 3.053095 AGACAATCTCTTGGCATCCCATT 60.053 43.478 0.00 0.00 43.39 3.16
2041 2351 3.703052 GACAATCTCTTGGCATCCCATTT 59.297 43.478 0.00 0.00 40.39 2.32
2042 2352 3.703052 ACAATCTCTTGGCATCCCATTTC 59.297 43.478 0.00 0.00 41.78 2.17
2043 2353 3.675348 ATCTCTTGGCATCCCATTTCA 57.325 42.857 0.00 0.00 41.78 2.69
2044 2354 3.675348 TCTCTTGGCATCCCATTTCAT 57.325 42.857 0.00 0.00 41.78 2.57
2045 2355 3.293337 TCTCTTGGCATCCCATTTCATG 58.707 45.455 0.00 0.00 41.78 3.07
2046 2356 3.053470 TCTCTTGGCATCCCATTTCATGA 60.053 43.478 0.00 0.00 41.78 3.07
2047 2357 3.895656 CTCTTGGCATCCCATTTCATGAT 59.104 43.478 0.00 0.00 41.78 2.45
2048 2358 5.064314 TCTTGGCATCCCATTTCATGATA 57.936 39.130 0.00 0.00 41.78 2.15
2049 2359 5.647230 TCTTGGCATCCCATTTCATGATAT 58.353 37.500 0.00 0.00 41.78 1.63
2050 2360 5.479027 TCTTGGCATCCCATTTCATGATATG 59.521 40.000 16.64 16.64 41.78 1.78
2051 2361 4.743124 TGGCATCCCATTTCATGATATGT 58.257 39.130 20.40 4.23 35.79 2.29
2052 2362 5.890049 TGGCATCCCATTTCATGATATGTA 58.110 37.500 20.40 11.39 35.79 2.29
2053 2363 5.711506 TGGCATCCCATTTCATGATATGTAC 59.288 40.000 20.40 8.25 35.79 2.90
2054 2364 5.948162 GGCATCCCATTTCATGATATGTACT 59.052 40.000 20.40 5.84 0.00 2.73
2055 2365 6.127814 GGCATCCCATTTCATGATATGTACTG 60.128 42.308 20.40 15.37 0.00 2.74
2056 2366 6.432162 GCATCCCATTTCATGATATGTACTGT 59.568 38.462 20.40 4.10 0.00 3.55
2057 2367 7.361542 GCATCCCATTTCATGATATGTACTGTC 60.362 40.741 20.40 9.64 0.00 3.51
2058 2368 7.379059 TCCCATTTCATGATATGTACTGTCT 57.621 36.000 20.40 0.00 0.00 3.41
2059 2369 8.491045 TCCCATTTCATGATATGTACTGTCTA 57.509 34.615 20.40 0.10 0.00 2.59
2060 2370 8.933653 TCCCATTTCATGATATGTACTGTCTAA 58.066 33.333 20.40 0.00 0.00 2.10
2061 2371 9.212641 CCCATTTCATGATATGTACTGTCTAAG 57.787 37.037 20.40 5.48 0.00 2.18
2062 2372 8.715998 CCATTTCATGATATGTACTGTCTAAGC 58.284 37.037 20.40 0.00 0.00 3.09
2063 2373 9.264719 CATTTCATGATATGTACTGTCTAAGCA 57.735 33.333 15.66 0.00 0.00 3.91
2065 2375 8.822652 TTCATGATATGTACTGTCTAAGCATG 57.177 34.615 0.00 0.00 0.00 4.06
2066 2376 8.181904 TCATGATATGTACTGTCTAAGCATGA 57.818 34.615 0.00 0.00 36.89 3.07
2067 2377 8.810041 TCATGATATGTACTGTCTAAGCATGAT 58.190 33.333 0.00 0.00 35.04 2.45
2068 2378 9.085250 CATGATATGTACTGTCTAAGCATGATC 57.915 37.037 0.00 0.00 33.23 2.92
2069 2379 7.308435 TGATATGTACTGTCTAAGCATGATCG 58.692 38.462 0.00 0.00 0.00 3.69
2070 2380 4.983671 TGTACTGTCTAAGCATGATCGT 57.016 40.909 0.00 0.00 0.00 3.73
2071 2381 5.324784 TGTACTGTCTAAGCATGATCGTT 57.675 39.130 0.00 0.00 0.00 3.85
2072 2382 5.102313 TGTACTGTCTAAGCATGATCGTTG 58.898 41.667 0.00 0.00 0.00 4.10
2073 2383 3.525537 ACTGTCTAAGCATGATCGTTGG 58.474 45.455 0.00 0.00 0.00 3.77
2074 2384 3.055819 ACTGTCTAAGCATGATCGTTGGT 60.056 43.478 0.00 0.00 0.00 3.67
2075 2385 3.521560 TGTCTAAGCATGATCGTTGGTC 58.478 45.455 0.00 0.00 0.00 4.02
2076 2386 3.195610 TGTCTAAGCATGATCGTTGGTCT 59.804 43.478 0.00 0.00 0.00 3.85
2077 2387 3.799420 GTCTAAGCATGATCGTTGGTCTC 59.201 47.826 0.00 0.00 0.00 3.36
2078 2388 3.701542 TCTAAGCATGATCGTTGGTCTCT 59.298 43.478 0.00 0.00 0.00 3.10
2079 2389 2.306341 AGCATGATCGTTGGTCTCTG 57.694 50.000 0.00 0.00 0.00 3.35
2080 2390 1.827344 AGCATGATCGTTGGTCTCTGA 59.173 47.619 0.00 0.00 0.00 3.27
2081 2391 1.929836 GCATGATCGTTGGTCTCTGAC 59.070 52.381 0.00 0.00 0.00 3.51
2082 2392 2.417924 GCATGATCGTTGGTCTCTGACT 60.418 50.000 0.00 0.00 32.47 3.41
2083 2393 3.181486 GCATGATCGTTGGTCTCTGACTA 60.181 47.826 0.00 0.00 32.47 2.59
2084 2394 4.605968 CATGATCGTTGGTCTCTGACTAG 58.394 47.826 0.00 0.00 32.47 2.57
2085 2395 2.423892 TGATCGTTGGTCTCTGACTAGC 59.576 50.000 0.00 0.00 32.47 3.42
2086 2396 2.201921 TCGTTGGTCTCTGACTAGCT 57.798 50.000 0.00 0.00 32.47 3.32
2087 2397 3.345508 TCGTTGGTCTCTGACTAGCTA 57.654 47.619 0.00 0.00 32.47 3.32
2088 2398 3.008330 TCGTTGGTCTCTGACTAGCTAC 58.992 50.000 0.00 0.00 32.47 3.58
2089 2399 2.097791 CGTTGGTCTCTGACTAGCTACC 59.902 54.545 0.00 0.00 32.47 3.18
2090 2400 3.358118 GTTGGTCTCTGACTAGCTACCT 58.642 50.000 0.00 0.00 32.64 3.08
2091 2401 4.525024 GTTGGTCTCTGACTAGCTACCTA 58.475 47.826 0.00 0.00 32.64 3.08
2092 2402 4.857130 TGGTCTCTGACTAGCTACCTAA 57.143 45.455 0.00 0.00 32.64 2.69
2093 2403 5.390087 TGGTCTCTGACTAGCTACCTAAT 57.610 43.478 0.00 0.00 32.64 1.73
2094 2404 5.767670 TGGTCTCTGACTAGCTACCTAATT 58.232 41.667 0.00 0.00 32.64 1.40
2095 2405 5.594725 TGGTCTCTGACTAGCTACCTAATTG 59.405 44.000 0.00 0.00 32.64 2.32
2096 2406 5.595133 GGTCTCTGACTAGCTACCTAATTGT 59.405 44.000 0.00 0.00 32.47 2.71
2097 2407 6.460399 GGTCTCTGACTAGCTACCTAATTGTG 60.460 46.154 0.00 0.00 32.47 3.33
2098 2408 6.319152 GTCTCTGACTAGCTACCTAATTGTGA 59.681 42.308 0.00 0.00 0.00 3.58
2099 2409 7.013846 GTCTCTGACTAGCTACCTAATTGTGAT 59.986 40.741 0.00 0.00 0.00 3.06
2100 2410 7.561722 TCTCTGACTAGCTACCTAATTGTGATT 59.438 37.037 0.00 0.00 0.00 2.57
2101 2411 7.492524 TCTGACTAGCTACCTAATTGTGATTG 58.507 38.462 0.00 0.00 0.00 2.67
2102 2412 7.342026 TCTGACTAGCTACCTAATTGTGATTGA 59.658 37.037 0.00 0.00 0.00 2.57
2103 2413 7.847096 TGACTAGCTACCTAATTGTGATTGAA 58.153 34.615 0.00 0.00 0.00 2.69
2104 2414 8.318412 TGACTAGCTACCTAATTGTGATTGAAA 58.682 33.333 0.00 0.00 0.00 2.69
2105 2415 9.162764 GACTAGCTACCTAATTGTGATTGAAAA 57.837 33.333 0.00 0.00 0.00 2.29
2106 2416 9.686683 ACTAGCTACCTAATTGTGATTGAAAAT 57.313 29.630 0.00 0.00 0.00 1.82
2110 2420 9.185192 GCTACCTAATTGTGATTGAAAATATGC 57.815 33.333 0.00 0.00 0.00 3.14
2112 2422 8.931385 ACCTAATTGTGATTGAAAATATGCAC 57.069 30.769 0.00 0.00 0.00 4.57
2113 2423 7.981225 ACCTAATTGTGATTGAAAATATGCACC 59.019 33.333 0.00 0.00 0.00 5.01
2114 2424 7.439056 CCTAATTGTGATTGAAAATATGCACCC 59.561 37.037 0.00 0.00 0.00 4.61
2115 2425 5.999205 TTGTGATTGAAAATATGCACCCT 57.001 34.783 0.00 0.00 0.00 4.34
2116 2426 5.999205 TGTGATTGAAAATATGCACCCTT 57.001 34.783 0.00 0.00 0.00 3.95
2117 2427 5.722263 TGTGATTGAAAATATGCACCCTTG 58.278 37.500 0.00 0.00 0.00 3.61
2118 2428 5.111293 GTGATTGAAAATATGCACCCTTGG 58.889 41.667 0.00 0.00 0.00 3.61
2119 2429 4.161942 TGATTGAAAATATGCACCCTTGGG 59.838 41.667 3.77 3.77 0.00 4.12
2133 2443 3.790089 CCTTGGGGAGTGTTCTTACTT 57.210 47.619 0.00 0.00 33.58 2.24
2134 2444 3.676093 CCTTGGGGAGTGTTCTTACTTC 58.324 50.000 0.00 0.00 33.58 3.01
2135 2445 3.072476 CCTTGGGGAGTGTTCTTACTTCA 59.928 47.826 0.00 0.00 33.58 3.02
2136 2446 4.263506 CCTTGGGGAGTGTTCTTACTTCAT 60.264 45.833 0.00 0.00 33.58 2.57
2137 2447 4.993705 TGGGGAGTGTTCTTACTTCATT 57.006 40.909 0.00 0.00 0.00 2.57
2138 2448 4.906618 TGGGGAGTGTTCTTACTTCATTC 58.093 43.478 0.00 0.00 0.00 2.67
2139 2449 3.933332 GGGGAGTGTTCTTACTTCATTCG 59.067 47.826 0.00 0.00 0.00 3.34
2140 2450 4.322499 GGGGAGTGTTCTTACTTCATTCGA 60.322 45.833 0.00 0.00 0.00 3.71
2141 2451 5.420409 GGGAGTGTTCTTACTTCATTCGAT 58.580 41.667 0.00 0.00 0.00 3.59
2142 2452 5.875359 GGGAGTGTTCTTACTTCATTCGATT 59.125 40.000 0.00 0.00 0.00 3.34
2143 2453 6.183360 GGGAGTGTTCTTACTTCATTCGATTG 60.183 42.308 0.78 0.78 0.00 2.67
2144 2454 6.183360 GGAGTGTTCTTACTTCATTCGATTGG 60.183 42.308 7.42 0.00 0.00 3.16
2145 2455 6.464222 AGTGTTCTTACTTCATTCGATTGGA 58.536 36.000 7.42 0.00 0.00 3.53
2146 2456 7.106239 AGTGTTCTTACTTCATTCGATTGGAT 58.894 34.615 7.42 0.00 0.00 3.41
2147 2457 7.278868 AGTGTTCTTACTTCATTCGATTGGATC 59.721 37.037 7.42 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.947433 GAAGATACTCCTGTCTAGCTAACTATA 57.053 37.037 0.00 0.00 0.00 1.31
21 22 8.665906 AGAAGATACTCCTGTCTAGCTAACTAT 58.334 37.037 0.00 0.00 0.00 2.12
133 134 2.749466 GCGATCTGGGGGAATGAAATCA 60.749 50.000 0.00 0.00 0.00 2.57
168 169 3.570975 AGTACATCCCGTGTATTATCGCA 59.429 43.478 0.00 0.00 44.65 5.10
198 383 6.419484 TCACTATCAGTTTTCTTCCAGTGA 57.581 37.500 0.00 0.00 36.59 3.41
200 385 9.442047 CTAATTCACTATCAGTTTTCTTCCAGT 57.558 33.333 0.00 0.00 0.00 4.00
201 386 9.442047 ACTAATTCACTATCAGTTTTCTTCCAG 57.558 33.333 0.00 0.00 0.00 3.86
202 387 9.219603 CACTAATTCACTATCAGTTTTCTTCCA 57.780 33.333 0.00 0.00 0.00 3.53
315 505 7.715265 TCACGGAATAATTCTTTCATCTAGC 57.285 36.000 4.11 0.00 0.00 3.42
327 517 6.472887 TGGTTTCTCTCTTCACGGAATAATT 58.527 36.000 0.00 0.00 0.00 1.40
345 535 2.079925 CTGGTGCTAGCTTCTGGTTTC 58.920 52.381 17.23 0.00 0.00 2.78
352 542 1.451028 CCAGGCTGGTGCTAGCTTC 60.451 63.158 25.74 9.00 43.22 3.86
438 633 3.043586 CGGATCTCGCGGTTATATATGC 58.956 50.000 6.13 0.00 0.00 3.14
464 659 2.031163 GCTGCGGAACTGTCTGGT 59.969 61.111 0.00 0.00 0.00 4.00
465 660 3.114616 CGCTGCGGAACTGTCTGG 61.115 66.667 15.40 0.00 0.00 3.86
467 662 0.946221 CTTTCGCTGCGGAACTGTCT 60.946 55.000 23.03 0.00 0.00 3.41
469 664 1.961277 CCTTTCGCTGCGGAACTGT 60.961 57.895 23.03 0.00 0.00 3.55
470 665 2.863153 CCTTTCGCTGCGGAACTG 59.137 61.111 23.03 8.77 0.00 3.16
471 666 3.050275 GCCTTTCGCTGCGGAACT 61.050 61.111 23.03 0.00 0.00 3.01
556 755 0.396435 TTCCAGATGCACGTCCAGTT 59.604 50.000 0.00 0.00 0.00 3.16
583 782 2.582498 GAATCGTCGGCCAGTCGG 60.582 66.667 2.24 0.00 32.44 4.79
584 783 2.949678 CGAATCGTCGGCCAGTCG 60.950 66.667 2.24 5.72 43.81 4.18
605 804 1.445716 CCAGTACGTAGCTCTCCGGG 61.446 65.000 0.00 0.00 0.00 5.73
612 811 1.757340 GGGGAGCCAGTACGTAGCT 60.757 63.158 7.47 7.47 40.24 3.32
801 1034 0.459063 GCATGCTTTGCCTACTTGCC 60.459 55.000 11.37 0.00 46.15 4.52
1012 1251 1.201647 CTTGCTGCCATGGTTCTTCAG 59.798 52.381 14.67 12.48 0.00 3.02
1019 1258 2.993264 GGTGCTTGCTGCCATGGT 60.993 61.111 14.67 0.00 42.00 3.55
1059 1313 4.444957 ATCCTGCCCAGCCCTCCT 62.445 66.667 0.00 0.00 0.00 3.69
1060 1314 4.201122 CATCCTGCCCAGCCCTCC 62.201 72.222 0.00 0.00 0.00 4.30
1061 1315 4.891037 GCATCCTGCCCAGCCCTC 62.891 72.222 0.00 0.00 37.42 4.30
1069 1323 2.509916 CTCCCTCAGCATCCTGCC 59.490 66.667 0.00 0.00 46.52 4.85
1158 1419 3.913509 AGAATCAGATGAGGAGCAGAGA 58.086 45.455 0.00 0.00 0.00 3.10
1206 1475 0.032678 ACACGCACACTCCAGAGAAG 59.967 55.000 0.70 0.00 0.00 2.85
1221 1502 6.183360 TGTCTATGACTCTATGTACACACACG 60.183 42.308 0.00 0.00 33.60 4.49
1222 1503 7.085052 TGTCTATGACTCTATGTACACACAC 57.915 40.000 0.00 0.00 33.60 3.82
1223 1504 7.881775 ATGTCTATGACTCTATGTACACACA 57.118 36.000 0.00 0.00 34.60 3.72
1224 1505 8.508062 CCTATGTCTATGACTCTATGTACACAC 58.492 40.741 0.00 0.00 33.15 3.82
1225 1506 7.665974 CCCTATGTCTATGACTCTATGTACACA 59.334 40.741 0.00 0.00 33.15 3.72
1226 1507 7.666388 ACCCTATGTCTATGACTCTATGTACAC 59.334 40.741 0.00 0.00 33.15 2.90
1227 1508 7.756614 ACCCTATGTCTATGACTCTATGTACA 58.243 38.462 0.00 0.00 33.15 2.90
1228 1509 9.386010 CTACCCTATGTCTATGACTCTATGTAC 57.614 40.741 0.00 0.00 33.15 2.90
1229 1510 9.113797 ACTACCCTATGTCTATGACTCTATGTA 57.886 37.037 0.00 0.00 33.15 2.29
1230 1511 7.991174 ACTACCCTATGTCTATGACTCTATGT 58.009 38.462 0.00 0.00 33.15 2.29
1231 1512 8.871629 AACTACCCTATGTCTATGACTCTATG 57.128 38.462 0.00 0.00 33.15 2.23
1234 1515 8.725256 TCTAAACTACCCTATGTCTATGACTCT 58.275 37.037 0.00 0.00 33.15 3.24
1235 1516 8.921353 TCTAAACTACCCTATGTCTATGACTC 57.079 38.462 0.00 0.00 33.15 3.36
1236 1517 9.357161 CTTCTAAACTACCCTATGTCTATGACT 57.643 37.037 0.00 0.00 33.15 3.41
1237 1518 9.134055 ACTTCTAAACTACCCTATGTCTATGAC 57.866 37.037 0.00 0.00 0.00 3.06
1238 1519 9.710818 AACTTCTAAACTACCCTATGTCTATGA 57.289 33.333 0.00 0.00 0.00 2.15
1239 1520 9.968870 GAACTTCTAAACTACCCTATGTCTATG 57.031 37.037 0.00 0.00 0.00 2.23
1240 1521 9.939424 AGAACTTCTAAACTACCCTATGTCTAT 57.061 33.333 0.00 0.00 0.00 1.98
1241 1522 9.186837 CAGAACTTCTAAACTACCCTATGTCTA 57.813 37.037 0.00 0.00 0.00 2.59
1242 1523 7.674772 ACAGAACTTCTAAACTACCCTATGTCT 59.325 37.037 0.00 0.00 0.00 3.41
1243 1524 7.838884 ACAGAACTTCTAAACTACCCTATGTC 58.161 38.462 0.00 0.00 0.00 3.06
1316 1608 2.565391 TGCAGGACTTAGGATCGAACAA 59.435 45.455 0.00 0.00 0.00 2.83
1319 1616 3.432186 CCATTGCAGGACTTAGGATCGAA 60.432 47.826 0.00 0.00 0.00 3.71
1359 1656 2.193517 CCAACACCCAACGGACCA 59.806 61.111 0.00 0.00 0.00 4.02
1460 1757 6.490381 AGCCTTTTTCGAGAGATAAACCTTTT 59.510 34.615 0.00 0.00 41.60 2.27
1527 1829 0.872881 GGTGGCGCGTATTCGTATGT 60.873 55.000 8.43 0.00 39.49 2.29
1528 1830 0.872451 TGGTGGCGCGTATTCGTATG 60.872 55.000 8.43 0.00 39.49 2.39
1533 1835 1.133869 GTTGTGGTGGCGCGTATTC 59.866 57.895 8.43 0.00 0.00 1.75
1539 1841 2.653766 CGTTTGTTGTGGTGGCGC 60.654 61.111 0.00 0.00 0.00 6.53
1603 1905 4.098196 GCTTCATCTCTTCGTAGTTAGGGT 59.902 45.833 0.00 0.00 0.00 4.34
1716 2018 1.002134 CGTGTTGCTCCAGGGGAAT 60.002 57.895 0.00 0.00 0.00 3.01
1792 2102 2.422479 CGGTTCTATCTTCGGACAGACA 59.578 50.000 0.00 0.00 25.81 3.41
1933 2243 1.909228 CGGCCCTGTTGGTGGTATA 59.091 57.895 0.00 0.00 36.04 1.47
1934 2244 2.674754 CGGCCCTGTTGGTGGTAT 59.325 61.111 0.00 0.00 36.04 2.73
1953 2263 1.077068 CTTGGATAAAGCCGGGGCA 60.077 57.895 12.97 0.00 44.88 5.36
1962 2272 4.394729 GTGGTGTCAAGGTCTTGGATAAA 58.605 43.478 10.39 0.00 40.78 1.40
1963 2273 3.244770 GGTGGTGTCAAGGTCTTGGATAA 60.245 47.826 10.39 0.00 40.78 1.75
1964 2274 2.304761 GGTGGTGTCAAGGTCTTGGATA 59.695 50.000 10.39 0.00 40.78 2.59
2022 2332 3.985127 TGAAATGGGATGCCAAGAGATT 58.015 40.909 11.10 0.00 0.00 2.40
2023 2333 3.675348 TGAAATGGGATGCCAAGAGAT 57.325 42.857 11.10 0.00 0.00 2.75
2024 2334 3.053470 TCATGAAATGGGATGCCAAGAGA 60.053 43.478 11.10 0.00 46.73 3.10
2025 2335 3.293337 TCATGAAATGGGATGCCAAGAG 58.707 45.455 11.10 0.00 46.73 2.85
2026 2336 3.385314 TCATGAAATGGGATGCCAAGA 57.615 42.857 11.10 0.00 46.73 3.02
2027 2337 5.245301 ACATATCATGAAATGGGATGCCAAG 59.755 40.000 11.10 0.00 46.73 3.61
2028 2338 5.149239 ACATATCATGAAATGGGATGCCAA 58.851 37.500 11.10 0.00 46.73 4.52
2029 2339 4.743124 ACATATCATGAAATGGGATGCCA 58.257 39.130 9.00 9.00 46.73 4.92
2030 2340 5.948162 AGTACATATCATGAAATGGGATGCC 59.052 40.000 0.00 0.00 46.73 4.40
2031 2341 6.432162 ACAGTACATATCATGAAATGGGATGC 59.568 38.462 0.00 0.00 46.73 3.91
2032 2342 7.881751 AGACAGTACATATCATGAAATGGGATG 59.118 37.037 0.00 0.00 46.73 3.51
2033 2343 7.982252 AGACAGTACATATCATGAAATGGGAT 58.018 34.615 0.00 0.00 46.73 3.85
2034 2344 7.379059 AGACAGTACATATCATGAAATGGGA 57.621 36.000 0.00 0.00 46.73 4.37
2035 2345 9.212641 CTTAGACAGTACATATCATGAAATGGG 57.787 37.037 0.00 0.00 46.73 4.00
2036 2346 8.715998 GCTTAGACAGTACATATCATGAAATGG 58.284 37.037 0.00 0.00 46.73 3.16
2039 2349 9.264719 CATGCTTAGACAGTACATATCATGAAA 57.735 33.333 0.00 0.00 31.90 2.69
2040 2350 8.641541 TCATGCTTAGACAGTACATATCATGAA 58.358 33.333 0.00 0.00 35.23 2.57
2041 2351 8.181904 TCATGCTTAGACAGTACATATCATGA 57.818 34.615 0.00 0.00 35.62 3.07
2042 2352 8.999220 ATCATGCTTAGACAGTACATATCATG 57.001 34.615 0.00 0.00 0.00 3.07
2043 2353 7.972832 CGATCATGCTTAGACAGTACATATCAT 59.027 37.037 0.00 0.00 0.00 2.45
2044 2354 7.040409 ACGATCATGCTTAGACAGTACATATCA 60.040 37.037 0.00 0.00 0.00 2.15
2045 2355 7.309177 ACGATCATGCTTAGACAGTACATATC 58.691 38.462 0.00 0.00 0.00 1.63
2046 2356 7.220741 ACGATCATGCTTAGACAGTACATAT 57.779 36.000 0.00 0.00 0.00 1.78
2047 2357 6.635030 ACGATCATGCTTAGACAGTACATA 57.365 37.500 0.00 0.00 0.00 2.29
2048 2358 5.521906 ACGATCATGCTTAGACAGTACAT 57.478 39.130 0.00 0.00 0.00 2.29
2049 2359 4.983671 ACGATCATGCTTAGACAGTACA 57.016 40.909 0.00 0.00 0.00 2.90
2050 2360 4.504461 CCAACGATCATGCTTAGACAGTAC 59.496 45.833 0.00 0.00 0.00 2.73
2051 2361 4.159693 ACCAACGATCATGCTTAGACAGTA 59.840 41.667 0.00 0.00 0.00 2.74
2052 2362 3.055819 ACCAACGATCATGCTTAGACAGT 60.056 43.478 0.00 0.00 0.00 3.55
2053 2363 3.525537 ACCAACGATCATGCTTAGACAG 58.474 45.455 0.00 0.00 0.00 3.51
2054 2364 3.195610 AGACCAACGATCATGCTTAGACA 59.804 43.478 0.00 0.00 0.00 3.41
2055 2365 3.786635 AGACCAACGATCATGCTTAGAC 58.213 45.455 0.00 0.00 0.00 2.59
2056 2366 3.701542 AGAGACCAACGATCATGCTTAGA 59.298 43.478 0.00 0.00 0.00 2.10
2057 2367 3.801050 CAGAGACCAACGATCATGCTTAG 59.199 47.826 0.00 0.00 0.00 2.18
2058 2368 3.447229 TCAGAGACCAACGATCATGCTTA 59.553 43.478 0.00 0.00 0.00 3.09
2059 2369 2.234661 TCAGAGACCAACGATCATGCTT 59.765 45.455 0.00 0.00 0.00 3.91
2060 2370 1.827344 TCAGAGACCAACGATCATGCT 59.173 47.619 0.00 0.00 0.00 3.79
2061 2371 1.929836 GTCAGAGACCAACGATCATGC 59.070 52.381 0.00 0.00 0.00 4.06
2062 2372 3.516981 AGTCAGAGACCAACGATCATG 57.483 47.619 0.00 0.00 32.18 3.07
2063 2373 3.067461 GCTAGTCAGAGACCAACGATCAT 59.933 47.826 0.00 0.00 32.18 2.45
2064 2374 2.423892 GCTAGTCAGAGACCAACGATCA 59.576 50.000 0.00 0.00 32.18 2.92
2065 2375 2.685897 AGCTAGTCAGAGACCAACGATC 59.314 50.000 0.00 0.00 32.18 3.69
2066 2376 2.729194 AGCTAGTCAGAGACCAACGAT 58.271 47.619 0.00 0.00 32.18 3.73
2067 2377 2.201921 AGCTAGTCAGAGACCAACGA 57.798 50.000 0.00 0.00 32.18 3.85
2068 2378 2.097791 GGTAGCTAGTCAGAGACCAACG 59.902 54.545 0.00 0.00 32.18 4.10
2069 2379 3.358118 AGGTAGCTAGTCAGAGACCAAC 58.642 50.000 0.00 0.00 32.85 3.77
2070 2380 3.741245 AGGTAGCTAGTCAGAGACCAA 57.259 47.619 0.00 0.00 32.85 3.67
2071 2381 4.857130 TTAGGTAGCTAGTCAGAGACCA 57.143 45.455 1.31 0.00 32.85 4.02
2072 2382 5.595133 ACAATTAGGTAGCTAGTCAGAGACC 59.405 44.000 1.31 0.00 32.18 3.85
2073 2383 6.319152 TCACAATTAGGTAGCTAGTCAGAGAC 59.681 42.308 1.31 0.00 0.00 3.36
2074 2384 6.424032 TCACAATTAGGTAGCTAGTCAGAGA 58.576 40.000 1.31 0.00 0.00 3.10
2075 2385 6.701145 TCACAATTAGGTAGCTAGTCAGAG 57.299 41.667 1.31 0.00 0.00 3.35
2076 2386 7.342026 TCAATCACAATTAGGTAGCTAGTCAGA 59.658 37.037 1.31 0.00 0.00 3.27
2077 2387 7.492524 TCAATCACAATTAGGTAGCTAGTCAG 58.507 38.462 1.31 0.00 0.00 3.51
2078 2388 7.418337 TCAATCACAATTAGGTAGCTAGTCA 57.582 36.000 1.31 0.00 0.00 3.41
2079 2389 8.718102 TTTCAATCACAATTAGGTAGCTAGTC 57.282 34.615 1.31 0.00 0.00 2.59
2080 2390 9.686683 ATTTTCAATCACAATTAGGTAGCTAGT 57.313 29.630 1.31 0.00 0.00 2.57
2084 2394 9.185192 GCATATTTTCAATCACAATTAGGTAGC 57.815 33.333 0.00 0.00 0.00 3.58
2087 2397 7.981225 GGTGCATATTTTCAATCACAATTAGGT 59.019 33.333 0.00 0.00 0.00 3.08
2088 2398 7.439056 GGGTGCATATTTTCAATCACAATTAGG 59.561 37.037 0.00 0.00 0.00 2.69
2089 2399 8.199449 AGGGTGCATATTTTCAATCACAATTAG 58.801 33.333 0.00 0.00 0.00 1.73
2090 2400 8.076910 AGGGTGCATATTTTCAATCACAATTA 57.923 30.769 0.00 0.00 0.00 1.40
2091 2401 6.949715 AGGGTGCATATTTTCAATCACAATT 58.050 32.000 0.00 0.00 0.00 2.32
2092 2402 6.549433 AGGGTGCATATTTTCAATCACAAT 57.451 33.333 0.00 0.00 0.00 2.71
2093 2403 5.999205 AGGGTGCATATTTTCAATCACAA 57.001 34.783 0.00 0.00 0.00 3.33
2094 2404 5.337410 CCAAGGGTGCATATTTTCAATCACA 60.337 40.000 0.00 0.00 0.00 3.58
2095 2405 5.111293 CCAAGGGTGCATATTTTCAATCAC 58.889 41.667 0.00 0.00 0.00 3.06
2096 2406 4.161942 CCCAAGGGTGCATATTTTCAATCA 59.838 41.667 0.00 0.00 0.00 2.57
2097 2407 4.443315 CCCCAAGGGTGCATATTTTCAATC 60.443 45.833 4.11 0.00 38.25 2.67
2098 2408 3.455543 CCCCAAGGGTGCATATTTTCAAT 59.544 43.478 4.11 0.00 38.25 2.57
2099 2409 2.836981 CCCCAAGGGTGCATATTTTCAA 59.163 45.455 4.11 0.00 38.25 2.69
2100 2410 2.043664 TCCCCAAGGGTGCATATTTTCA 59.956 45.455 4.11 0.00 44.74 2.69
2101 2411 2.695147 CTCCCCAAGGGTGCATATTTTC 59.305 50.000 4.11 0.00 44.74 2.29
2102 2412 2.044353 ACTCCCCAAGGGTGCATATTTT 59.956 45.455 4.11 0.00 44.74 1.82
2103 2413 1.645919 ACTCCCCAAGGGTGCATATTT 59.354 47.619 4.11 0.00 44.74 1.40
2104 2414 1.063717 CACTCCCCAAGGGTGCATATT 60.064 52.381 4.11 0.00 44.74 1.28
2105 2415 0.552848 CACTCCCCAAGGGTGCATAT 59.447 55.000 4.11 0.00 44.74 1.78
2106 2416 0.844661 ACACTCCCCAAGGGTGCATA 60.845 55.000 4.11 0.00 41.28 3.14
2107 2417 1.729267 AACACTCCCCAAGGGTGCAT 61.729 55.000 4.11 0.00 42.32 3.96
2108 2418 2.351924 GAACACTCCCCAAGGGTGCA 62.352 60.000 4.11 0.00 42.32 4.57
2109 2419 1.603739 GAACACTCCCCAAGGGTGC 60.604 63.158 4.11 0.00 42.32 5.01
2110 2420 0.478507 AAGAACACTCCCCAAGGGTG 59.521 55.000 4.11 0.82 42.32 4.61
2111 2421 1.703513 GTAAGAACACTCCCCAAGGGT 59.296 52.381 4.11 0.00 46.34 4.34
2112 2422 1.985895 AGTAAGAACACTCCCCAAGGG 59.014 52.381 0.00 0.00 46.11 3.95
2113 2423 3.072476 TGAAGTAAGAACACTCCCCAAGG 59.928 47.826 0.00 0.00 0.00 3.61
2114 2424 4.351874 TGAAGTAAGAACACTCCCCAAG 57.648 45.455 0.00 0.00 0.00 3.61
2115 2425 4.993705 ATGAAGTAAGAACACTCCCCAA 57.006 40.909 0.00 0.00 0.00 4.12
2116 2426 4.562757 CGAATGAAGTAAGAACACTCCCCA 60.563 45.833 0.00 0.00 0.00 4.96
2117 2427 3.933332 CGAATGAAGTAAGAACACTCCCC 59.067 47.826 0.00 0.00 0.00 4.81
2118 2428 4.817517 TCGAATGAAGTAAGAACACTCCC 58.182 43.478 0.00 0.00 0.00 4.30
2119 2429 6.183360 CCAATCGAATGAAGTAAGAACACTCC 60.183 42.308 0.94 0.00 0.00 3.85
2120 2430 6.590292 TCCAATCGAATGAAGTAAGAACACTC 59.410 38.462 0.94 0.00 0.00 3.51
2121 2431 6.464222 TCCAATCGAATGAAGTAAGAACACT 58.536 36.000 0.94 0.00 0.00 3.55
2122 2432 6.721571 TCCAATCGAATGAAGTAAGAACAC 57.278 37.500 0.94 0.00 0.00 3.32
2123 2433 7.539712 GATCCAATCGAATGAAGTAAGAACA 57.460 36.000 0.94 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.