Multiple sequence alignment - TraesCS1D01G377000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G377000 chr1D 100.000 3099 0 0 1 3099 453294049 453290951 0.000000e+00 5723.0
1 TraesCS1D01G377000 chr1B 92.280 1671 108 11 330 1990 623771888 623770229 0.000000e+00 2351.0
2 TraesCS1D01G377000 chr1B 89.226 1550 135 20 454 1990 623961796 623963326 0.000000e+00 1908.0
3 TraesCS1D01G377000 chr1B 94.028 653 28 4 2458 3099 623769809 623769157 0.000000e+00 979.0
4 TraesCS1D01G377000 chr1B 92.830 265 18 1 1985 2248 623770128 623769864 1.740000e-102 383.0
5 TraesCS1D01G377000 chr1B 84.456 386 54 4 574 958 623952602 623952222 2.920000e-100 375.0
6 TraesCS1D01G377000 chr1B 83.521 267 33 5 2013 2272 623963439 623963701 3.990000e-59 239.0
7 TraesCS1D01G377000 chr1A 88.644 1726 142 22 302 1990 547982268 547980560 0.000000e+00 2052.0
8 TraesCS1D01G377000 chr1A 90.453 1215 105 7 783 1990 548437680 548438890 0.000000e+00 1591.0
9 TraesCS1D01G377000 chr1A 89.802 353 20 3 1985 2336 547980459 547980122 3.670000e-119 438.0
10 TraesCS1D01G377000 chr1A 83.692 325 25 12 453 754 548437371 548437690 6.540000e-72 281.0
11 TraesCS1D01G377000 chr1A 83.729 295 36 7 1985 2272 548438989 548439278 5.090000e-68 268.0
12 TraesCS1D01G377000 chr6A 96.241 133 5 0 2333 2465 494467147 494467279 5.200000e-53 219.0
13 TraesCS1D01G377000 chr7A 95.556 135 6 0 2333 2467 343843842 343843708 1.870000e-52 217.0
14 TraesCS1D01G377000 chr7A 82.278 79 14 0 892 970 672153038 672153116 5.550000e-08 69.4
15 TraesCS1D01G377000 chr2D 94.891 137 7 0 2325 2461 83539578 83539714 6.730000e-52 215.0
16 TraesCS1D01G377000 chr2D 93.662 142 9 0 2325 2466 56110961 56110820 2.420000e-51 213.0
17 TraesCS1D01G377000 chr5B 94.853 136 7 0 2335 2470 563516784 563516649 2.420000e-51 213.0
18 TraesCS1D01G377000 chr5B 92.414 145 11 0 2329 2473 221844491 221844347 1.130000e-49 207.0
19 TraesCS1D01G377000 chr4A 94.286 140 7 1 2332 2470 1910501 1910362 2.420000e-51 213.0
20 TraesCS1D01G377000 chr4A 72.050 322 64 22 889 1192 84934834 84935147 4.290000e-09 73.1
21 TraesCS1D01G377000 chr2B 94.286 140 7 1 2335 2473 648375649 648375788 2.420000e-51 213.0
22 TraesCS1D01G377000 chr7D 92.908 141 9 1 2335 2474 397563327 397563187 1.460000e-48 204.0
23 TraesCS1D01G377000 chr7D 75.510 196 34 8 1163 1345 548617440 548617634 1.980000e-12 84.2
24 TraesCS1D01G377000 chr7D 74.026 231 46 8 1128 1345 548609237 548609466 7.120000e-12 82.4
25 TraesCS1D01G377000 chr4D 72.405 395 72 26 901 1267 379501325 379500940 1.180000e-14 91.6
26 TraesCS1D01G377000 chr3B 83.951 81 13 0 899 979 738126514 738126434 9.210000e-11 78.7
27 TraesCS1D01G377000 chr4B 73.438 192 42 3 1163 1345 466695464 466695273 2.580000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G377000 chr1D 453290951 453294049 3098 True 5723.000000 5723 100.0000 1 3099 1 chr1D.!!$R1 3098
1 TraesCS1D01G377000 chr1B 623769157 623771888 2731 True 1237.666667 2351 93.0460 330 3099 3 chr1B.!!$R2 2769
2 TraesCS1D01G377000 chr1B 623961796 623963701 1905 False 1073.500000 1908 86.3735 454 2272 2 chr1B.!!$F1 1818
3 TraesCS1D01G377000 chr1A 547980122 547982268 2146 True 1245.000000 2052 89.2230 302 2336 2 chr1A.!!$R1 2034
4 TraesCS1D01G377000 chr1A 548437371 548439278 1907 False 713.333333 1591 85.9580 453 2272 3 chr1A.!!$F1 1819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.037232 AAGGCGAGAAAACGGGAGAG 60.037 55.0 0.0 0.0 0.00 3.2 F
1122 1194 0.106217 CCTCTGGTCTCTCCCCTCTC 60.106 65.0 0.0 0.0 34.77 3.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1138 1210 0.035630 GCAGGAAGATGCTCTGGTGT 60.036 55.0 0.0 0.0 43.07 4.16 R
2683 2880 0.707616 TCGGGGTGGAATTGGGATTT 59.292 50.0 0.0 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.565764 ATGGATGATTTCGGAAGCAGA 57.434 42.857 0.00 0.00 34.21 4.26
21 22 3.565764 TGGATGATTTCGGAAGCAGAT 57.434 42.857 0.00 0.00 34.21 2.90
22 23 3.889815 TGGATGATTTCGGAAGCAGATT 58.110 40.909 0.00 0.00 34.21 2.40
23 24 3.628942 TGGATGATTTCGGAAGCAGATTG 59.371 43.478 0.00 0.00 34.21 2.67
24 25 3.879295 GGATGATTTCGGAAGCAGATTGA 59.121 43.478 0.00 0.00 34.21 2.57
25 26 4.336433 GGATGATTTCGGAAGCAGATTGAA 59.664 41.667 0.00 0.00 34.21 2.69
26 27 4.952262 TGATTTCGGAAGCAGATTGAAG 57.048 40.909 0.00 0.00 0.00 3.02
27 28 3.691118 TGATTTCGGAAGCAGATTGAAGG 59.309 43.478 0.00 0.00 0.00 3.46
28 29 2.113860 TTCGGAAGCAGATTGAAGGG 57.886 50.000 0.00 0.00 0.00 3.95
29 30 0.984230 TCGGAAGCAGATTGAAGGGT 59.016 50.000 0.00 0.00 0.00 4.34
30 31 1.089920 CGGAAGCAGATTGAAGGGTG 58.910 55.000 0.00 0.00 0.00 4.61
31 32 1.467920 GGAAGCAGATTGAAGGGTGG 58.532 55.000 0.00 0.00 0.00 4.61
32 33 1.004745 GGAAGCAGATTGAAGGGTGGA 59.995 52.381 0.00 0.00 0.00 4.02
33 34 2.555227 GGAAGCAGATTGAAGGGTGGAA 60.555 50.000 0.00 0.00 0.00 3.53
34 35 2.503895 AGCAGATTGAAGGGTGGAAG 57.496 50.000 0.00 0.00 0.00 3.46
35 36 1.707427 AGCAGATTGAAGGGTGGAAGT 59.293 47.619 0.00 0.00 0.00 3.01
36 37 1.815003 GCAGATTGAAGGGTGGAAGTG 59.185 52.381 0.00 0.00 0.00 3.16
37 38 1.815003 CAGATTGAAGGGTGGAAGTGC 59.185 52.381 0.00 0.00 0.00 4.40
38 39 1.707427 AGATTGAAGGGTGGAAGTGCT 59.293 47.619 0.00 0.00 0.00 4.40
39 40 2.108952 AGATTGAAGGGTGGAAGTGCTT 59.891 45.455 0.00 0.00 0.00 3.91
40 41 1.691196 TTGAAGGGTGGAAGTGCTTG 58.309 50.000 0.00 0.00 0.00 4.01
41 42 0.843309 TGAAGGGTGGAAGTGCTTGA 59.157 50.000 0.00 0.00 0.00 3.02
42 43 1.202806 TGAAGGGTGGAAGTGCTTGAG 60.203 52.381 0.00 0.00 0.00 3.02
43 44 0.538287 AAGGGTGGAAGTGCTTGAGC 60.538 55.000 0.00 0.00 42.50 4.26
53 54 4.445699 GCTTGAGCATCGTAGGGG 57.554 61.111 0.00 0.00 41.59 4.79
54 55 1.823295 GCTTGAGCATCGTAGGGGA 59.177 57.895 0.00 0.00 41.59 4.81
55 56 0.249657 GCTTGAGCATCGTAGGGGAG 60.250 60.000 0.00 0.00 41.59 4.30
56 57 1.403814 CTTGAGCATCGTAGGGGAGA 58.596 55.000 0.00 0.00 38.61 3.71
57 58 1.339610 CTTGAGCATCGTAGGGGAGAG 59.660 57.143 0.00 0.00 38.61 3.20
58 59 0.551396 TGAGCATCGTAGGGGAGAGA 59.449 55.000 0.00 0.00 38.61 3.10
59 60 1.243902 GAGCATCGTAGGGGAGAGAG 58.756 60.000 0.00 0.00 0.00 3.20
60 61 0.847373 AGCATCGTAGGGGAGAGAGA 59.153 55.000 0.00 0.00 0.00 3.10
61 62 0.955905 GCATCGTAGGGGAGAGAGAC 59.044 60.000 0.00 0.00 0.00 3.36
62 63 1.231221 CATCGTAGGGGAGAGAGACG 58.769 60.000 0.00 0.00 34.90 4.18
63 64 1.129917 ATCGTAGGGGAGAGAGACGA 58.870 55.000 0.00 0.00 45.54 4.20
64 65 0.464870 TCGTAGGGGAGAGAGACGAG 59.535 60.000 0.00 0.00 37.60 4.18
65 66 0.464870 CGTAGGGGAGAGAGACGAGA 59.535 60.000 0.00 0.00 35.59 4.04
66 67 1.071071 CGTAGGGGAGAGAGACGAGAT 59.929 57.143 0.00 0.00 35.59 2.75
67 68 2.774687 GTAGGGGAGAGAGACGAGATC 58.225 57.143 0.00 0.00 0.00 2.75
68 69 0.107831 AGGGGAGAGAGACGAGATCG 59.892 60.000 0.00 0.00 46.33 3.69
69 70 0.107081 GGGGAGAGAGACGAGATCGA 59.893 60.000 9.58 0.00 43.02 3.59
70 71 1.475392 GGGGAGAGAGACGAGATCGAA 60.475 57.143 9.58 0.00 43.02 3.71
71 72 1.871039 GGGAGAGAGACGAGATCGAAG 59.129 57.143 9.58 0.00 43.02 3.79
72 73 1.871039 GGAGAGAGACGAGATCGAAGG 59.129 57.143 9.58 0.00 43.02 3.46
73 74 1.263217 GAGAGAGACGAGATCGAAGGC 59.737 57.143 9.58 0.00 43.02 4.35
74 75 0.041663 GAGAGACGAGATCGAAGGCG 60.042 60.000 9.58 0.00 43.02 5.52
83 84 4.255126 TCGAAGGCGAGAAAACGG 57.745 55.556 0.00 0.00 42.51 4.44
84 85 1.373748 TCGAAGGCGAGAAAACGGG 60.374 57.895 0.00 0.00 42.51 5.28
85 86 1.373748 CGAAGGCGAGAAAACGGGA 60.374 57.895 0.00 0.00 40.82 5.14
86 87 1.352156 CGAAGGCGAGAAAACGGGAG 61.352 60.000 0.00 0.00 40.82 4.30
87 88 0.037605 GAAGGCGAGAAAACGGGAGA 60.038 55.000 0.00 0.00 0.00 3.71
88 89 0.037232 AAGGCGAGAAAACGGGAGAG 60.037 55.000 0.00 0.00 0.00 3.20
89 90 1.186267 AGGCGAGAAAACGGGAGAGT 61.186 55.000 0.00 0.00 0.00 3.24
90 91 0.529378 GGCGAGAAAACGGGAGAGTA 59.471 55.000 0.00 0.00 0.00 2.59
91 92 1.469423 GGCGAGAAAACGGGAGAGTAG 60.469 57.143 0.00 0.00 0.00 2.57
92 93 1.471684 GCGAGAAAACGGGAGAGTAGA 59.528 52.381 0.00 0.00 0.00 2.59
93 94 2.099427 GCGAGAAAACGGGAGAGTAGAT 59.901 50.000 0.00 0.00 0.00 1.98
94 95 3.696898 CGAGAAAACGGGAGAGTAGATG 58.303 50.000 0.00 0.00 0.00 2.90
95 96 3.449632 GAGAAAACGGGAGAGTAGATGC 58.550 50.000 0.00 0.00 0.00 3.91
96 97 2.168728 AGAAAACGGGAGAGTAGATGCC 59.831 50.000 0.00 0.00 0.00 4.40
97 98 1.568504 AAACGGGAGAGTAGATGCCA 58.431 50.000 0.00 0.00 0.00 4.92
98 99 1.115467 AACGGGAGAGTAGATGCCAG 58.885 55.000 0.00 0.00 0.00 4.85
99 100 0.259065 ACGGGAGAGTAGATGCCAGA 59.741 55.000 0.00 0.00 0.00 3.86
100 101 1.133325 ACGGGAGAGTAGATGCCAGAT 60.133 52.381 0.00 0.00 0.00 2.90
101 102 1.967066 CGGGAGAGTAGATGCCAGATT 59.033 52.381 0.00 0.00 0.00 2.40
102 103 2.029470 CGGGAGAGTAGATGCCAGATTC 60.029 54.545 0.00 0.00 0.00 2.52
103 104 2.029470 GGGAGAGTAGATGCCAGATTCG 60.029 54.545 0.00 0.00 0.00 3.34
104 105 2.625790 GGAGAGTAGATGCCAGATTCGT 59.374 50.000 0.00 0.00 0.00 3.85
105 106 3.068873 GGAGAGTAGATGCCAGATTCGTT 59.931 47.826 0.00 0.00 0.00 3.85
106 107 4.047822 GAGAGTAGATGCCAGATTCGTTG 58.952 47.826 0.00 0.00 0.00 4.10
107 108 3.701542 AGAGTAGATGCCAGATTCGTTGA 59.298 43.478 0.00 0.00 0.00 3.18
108 109 4.047822 GAGTAGATGCCAGATTCGTTGAG 58.952 47.826 0.00 0.00 0.00 3.02
109 110 2.322355 AGATGCCAGATTCGTTGAGG 57.678 50.000 0.00 0.00 0.00 3.86
110 111 1.134280 AGATGCCAGATTCGTTGAGGG 60.134 52.381 0.00 0.00 0.00 4.30
111 112 0.107017 ATGCCAGATTCGTTGAGGGG 60.107 55.000 0.00 0.00 0.00 4.79
112 113 1.299976 GCCAGATTCGTTGAGGGGT 59.700 57.895 0.00 0.00 0.00 4.95
113 114 0.322546 GCCAGATTCGTTGAGGGGTT 60.323 55.000 0.00 0.00 0.00 4.11
114 115 1.739067 CCAGATTCGTTGAGGGGTTC 58.261 55.000 0.00 0.00 0.00 3.62
115 116 1.359848 CAGATTCGTTGAGGGGTTCG 58.640 55.000 0.00 0.00 0.00 3.95
116 117 1.067142 CAGATTCGTTGAGGGGTTCGA 60.067 52.381 0.00 0.00 0.00 3.71
117 118 1.621814 AGATTCGTTGAGGGGTTCGAA 59.378 47.619 0.00 0.00 44.19 3.71
118 119 1.730612 GATTCGTTGAGGGGTTCGAAC 59.269 52.381 20.14 20.14 43.20 3.95
119 120 0.464870 TTCGTTGAGGGGTTCGAACA 59.535 50.000 28.24 5.96 37.38 3.18
120 121 0.464870 TCGTTGAGGGGTTCGAACAA 59.535 50.000 28.24 11.90 0.00 2.83
121 122 1.071071 TCGTTGAGGGGTTCGAACAAT 59.929 47.619 28.24 14.00 0.00 2.71
122 123 1.877443 CGTTGAGGGGTTCGAACAATT 59.123 47.619 28.24 13.25 0.00 2.32
123 124 2.350388 CGTTGAGGGGTTCGAACAATTG 60.350 50.000 28.24 3.24 0.00 2.32
124 125 2.882137 GTTGAGGGGTTCGAACAATTGA 59.118 45.455 28.24 7.47 0.00 2.57
125 126 3.433306 TGAGGGGTTCGAACAATTGAT 57.567 42.857 28.24 0.00 0.00 2.57
126 127 3.761897 TGAGGGGTTCGAACAATTGATT 58.238 40.909 28.24 7.40 0.00 2.57
127 128 4.148838 TGAGGGGTTCGAACAATTGATTT 58.851 39.130 28.24 5.90 0.00 2.17
128 129 5.317808 TGAGGGGTTCGAACAATTGATTTA 58.682 37.500 28.24 4.02 0.00 1.40
129 130 5.949354 TGAGGGGTTCGAACAATTGATTTAT 59.051 36.000 28.24 3.28 0.00 1.40
130 131 6.127758 TGAGGGGTTCGAACAATTGATTTATG 60.128 38.462 28.24 0.00 0.00 1.90
131 132 5.714806 AGGGGTTCGAACAATTGATTTATGT 59.285 36.000 28.24 0.00 0.00 2.29
132 133 6.210584 AGGGGTTCGAACAATTGATTTATGTT 59.789 34.615 28.24 0.00 39.82 2.71
133 134 6.871492 GGGGTTCGAACAATTGATTTATGTTT 59.129 34.615 28.24 0.00 37.41 2.83
134 135 7.062956 GGGGTTCGAACAATTGATTTATGTTTC 59.937 37.037 28.24 5.75 37.41 2.78
135 136 7.812669 GGGTTCGAACAATTGATTTATGTTTCT 59.187 33.333 28.24 0.00 37.41 2.52
136 137 8.638565 GGTTCGAACAATTGATTTATGTTTCTG 58.361 33.333 28.24 0.67 37.41 3.02
137 138 7.795431 TCGAACAATTGATTTATGTTTCTGC 57.205 32.000 13.59 0.00 37.41 4.26
138 139 7.366513 TCGAACAATTGATTTATGTTTCTGCA 58.633 30.769 13.59 0.00 37.41 4.41
139 140 7.864882 TCGAACAATTGATTTATGTTTCTGCAA 59.135 29.630 13.59 0.00 37.41 4.08
140 141 7.946237 CGAACAATTGATTTATGTTTCTGCAAC 59.054 33.333 13.59 0.00 37.41 4.17
149 150 3.029320 TGTTTCTGCAACATCATTGCC 57.971 42.857 9.02 0.00 44.32 4.52
150 151 2.288948 TGTTTCTGCAACATCATTGCCC 60.289 45.455 9.02 0.00 44.32 5.36
151 152 0.896923 TTCTGCAACATCATTGCCCC 59.103 50.000 9.02 0.00 44.32 5.80
152 153 0.251698 TCTGCAACATCATTGCCCCA 60.252 50.000 9.02 0.00 44.32 4.96
153 154 0.108520 CTGCAACATCATTGCCCCAC 60.109 55.000 9.02 0.00 44.32 4.61
154 155 0.830866 TGCAACATCATTGCCCCACA 60.831 50.000 9.02 0.00 44.32 4.17
155 156 0.390209 GCAACATCATTGCCCCACAC 60.390 55.000 0.01 0.00 39.38 3.82
156 157 0.967662 CAACATCATTGCCCCACACA 59.032 50.000 0.00 0.00 0.00 3.72
157 158 1.551430 CAACATCATTGCCCCACACAT 59.449 47.619 0.00 0.00 0.00 3.21
158 159 1.187974 ACATCATTGCCCCACACATG 58.812 50.000 0.00 0.00 0.00 3.21
159 160 1.187974 CATCATTGCCCCACACATGT 58.812 50.000 0.00 0.00 0.00 3.21
160 161 1.134936 CATCATTGCCCCACACATGTG 60.135 52.381 24.25 24.25 45.23 3.21
168 169 2.557805 CACACATGTGGTCGCTGC 59.442 61.111 28.64 0.00 42.10 5.25
169 170 3.043713 ACACATGTGGTCGCTGCG 61.044 61.111 28.64 17.25 34.19 5.18
170 171 2.738139 CACATGTGGTCGCTGCGA 60.738 61.111 22.24 22.24 0.00 5.10
171 172 2.433145 ACATGTGGTCGCTGCGAG 60.433 61.111 26.68 14.84 36.23 5.03
172 173 2.125952 CATGTGGTCGCTGCGAGA 60.126 61.111 26.68 12.42 36.23 4.04
173 174 2.163390 CATGTGGTCGCTGCGAGAG 61.163 63.158 26.68 7.86 36.23 3.20
174 175 3.362399 ATGTGGTCGCTGCGAGAGG 62.362 63.158 26.68 0.00 36.23 3.69
191 192 2.258286 GCAATTGGTGCGTGGTCC 59.742 61.111 7.72 0.00 45.10 4.46
192 193 2.961768 CAATTGGTGCGTGGTCCC 59.038 61.111 0.00 0.00 0.00 4.46
193 194 1.900981 CAATTGGTGCGTGGTCCCA 60.901 57.895 0.00 0.00 0.00 4.37
194 195 1.076549 AATTGGTGCGTGGTCCCAT 59.923 52.632 0.00 0.00 0.00 4.00
195 196 1.250154 AATTGGTGCGTGGTCCCATG 61.250 55.000 0.95 0.95 36.13 3.66
196 197 3.859118 TTGGTGCGTGGTCCCATGG 62.859 63.158 4.14 4.14 33.81 3.66
202 203 3.978193 GTGGTCCCATGGGGCACA 61.978 66.667 35.76 26.81 43.94 4.57
203 204 2.946084 TGGTCCCATGGGGCACAT 60.946 61.111 35.76 0.00 43.94 3.21
232 233 3.224324 GAGGCGGCGGATGGAGTA 61.224 66.667 9.78 0.00 0.00 2.59
233 234 2.762459 AGGCGGCGGATGGAGTAA 60.762 61.111 9.78 0.00 0.00 2.24
234 235 2.188469 GGCGGCGGATGGAGTAAA 59.812 61.111 9.78 0.00 0.00 2.01
235 236 1.887707 GGCGGCGGATGGAGTAAAG 60.888 63.158 9.78 0.00 0.00 1.85
236 237 1.143183 GCGGCGGATGGAGTAAAGA 59.857 57.895 9.78 0.00 0.00 2.52
237 238 0.461339 GCGGCGGATGGAGTAAAGAA 60.461 55.000 9.78 0.00 0.00 2.52
238 239 2.010043 GCGGCGGATGGAGTAAAGAAA 61.010 52.381 9.78 0.00 0.00 2.52
239 240 2.352388 CGGCGGATGGAGTAAAGAAAA 58.648 47.619 0.00 0.00 0.00 2.29
240 241 2.943033 CGGCGGATGGAGTAAAGAAAAT 59.057 45.455 0.00 0.00 0.00 1.82
241 242 3.002348 CGGCGGATGGAGTAAAGAAAATC 59.998 47.826 0.00 0.00 0.00 2.17
242 243 3.945285 GGCGGATGGAGTAAAGAAAATCA 59.055 43.478 0.00 0.00 0.00 2.57
243 244 4.035675 GGCGGATGGAGTAAAGAAAATCAG 59.964 45.833 0.00 0.00 0.00 2.90
244 245 4.636206 GCGGATGGAGTAAAGAAAATCAGT 59.364 41.667 0.00 0.00 0.00 3.41
245 246 5.220681 GCGGATGGAGTAAAGAAAATCAGTC 60.221 44.000 0.00 0.00 0.00 3.51
246 247 5.005779 CGGATGGAGTAAAGAAAATCAGTCG 59.994 44.000 0.00 0.00 0.00 4.18
247 248 5.294552 GGATGGAGTAAAGAAAATCAGTCGG 59.705 44.000 0.00 0.00 0.00 4.79
248 249 4.575885 TGGAGTAAAGAAAATCAGTCGGG 58.424 43.478 0.00 0.00 0.00 5.14
249 250 4.041198 TGGAGTAAAGAAAATCAGTCGGGT 59.959 41.667 0.00 0.00 0.00 5.28
250 251 4.392138 GGAGTAAAGAAAATCAGTCGGGTG 59.608 45.833 0.00 0.00 0.00 4.61
251 252 5.223449 AGTAAAGAAAATCAGTCGGGTGA 57.777 39.130 0.00 0.00 0.00 4.02
252 253 5.617252 AGTAAAGAAAATCAGTCGGGTGAA 58.383 37.500 0.00 0.00 0.00 3.18
253 254 6.238648 AGTAAAGAAAATCAGTCGGGTGAAT 58.761 36.000 0.00 0.00 0.00 2.57
254 255 7.391620 AGTAAAGAAAATCAGTCGGGTGAATA 58.608 34.615 0.00 0.00 0.00 1.75
255 256 7.881232 AGTAAAGAAAATCAGTCGGGTGAATAA 59.119 33.333 0.00 0.00 0.00 1.40
256 257 7.703058 AAAGAAAATCAGTCGGGTGAATAAT 57.297 32.000 0.00 0.00 0.00 1.28
257 258 8.801882 AAAGAAAATCAGTCGGGTGAATAATA 57.198 30.769 0.00 0.00 0.00 0.98
258 259 8.438676 AAGAAAATCAGTCGGGTGAATAATAG 57.561 34.615 0.00 0.00 0.00 1.73
259 260 7.565680 AGAAAATCAGTCGGGTGAATAATAGT 58.434 34.615 0.00 0.00 0.00 2.12
260 261 7.495934 AGAAAATCAGTCGGGTGAATAATAGTG 59.504 37.037 0.00 0.00 0.00 2.74
261 262 5.871396 ATCAGTCGGGTGAATAATAGTGT 57.129 39.130 0.00 0.00 0.00 3.55
262 263 5.670792 TCAGTCGGGTGAATAATAGTGTT 57.329 39.130 0.00 0.00 0.00 3.32
263 264 6.045072 TCAGTCGGGTGAATAATAGTGTTT 57.955 37.500 0.00 0.00 0.00 2.83
264 265 6.469410 TCAGTCGGGTGAATAATAGTGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
265 266 6.592607 TCAGTCGGGTGAATAATAGTGTTTTC 59.407 38.462 0.00 0.00 0.00 2.29
266 267 5.878669 AGTCGGGTGAATAATAGTGTTTTCC 59.121 40.000 0.00 0.00 0.00 3.13
267 268 5.878669 GTCGGGTGAATAATAGTGTTTTCCT 59.121 40.000 0.00 0.00 0.00 3.36
268 269 6.373495 GTCGGGTGAATAATAGTGTTTTCCTT 59.627 38.462 0.00 0.00 0.00 3.36
269 270 6.596497 TCGGGTGAATAATAGTGTTTTCCTTC 59.404 38.462 0.00 0.00 0.00 3.46
270 271 6.373216 CGGGTGAATAATAGTGTTTTCCTTCA 59.627 38.462 0.00 0.00 0.00 3.02
271 272 7.094549 CGGGTGAATAATAGTGTTTTCCTTCAA 60.095 37.037 0.00 0.00 0.00 2.69
272 273 8.581578 GGGTGAATAATAGTGTTTTCCTTCAAA 58.418 33.333 0.00 0.00 0.00 2.69
273 274 9.974980 GGTGAATAATAGTGTTTTCCTTCAAAA 57.025 29.630 0.00 0.00 0.00 2.44
416 422 8.889717 GGGTGAAATAAATAAACATCTTCTCGA 58.110 33.333 0.00 0.00 0.00 4.04
541 590 3.068691 CCCTTCGTCGGCAGAGGA 61.069 66.667 5.10 5.10 39.24 3.71
1001 1072 2.887568 GTCATCTCGCACCCGCAG 60.888 66.667 0.00 0.00 38.40 5.18
1082 1154 1.672356 CCAGCTCCCTGTTTCACCG 60.672 63.158 0.00 0.00 37.38 4.94
1089 1161 0.320421 CCCTGTTTCACCGACGTCAT 60.320 55.000 17.16 0.00 0.00 3.06
1117 1189 3.151022 CGCCCTCTGGTCTCTCCC 61.151 72.222 0.00 0.00 34.77 4.30
1122 1194 0.106217 CCTCTGGTCTCTCCCCTCTC 60.106 65.000 0.00 0.00 34.77 3.20
1138 1210 1.204786 TCTCCGATTTCCTGCCCCAA 61.205 55.000 0.00 0.00 0.00 4.12
1207 1279 2.614969 TGCTGGGAAGGCCAGGAT 60.615 61.111 5.01 0.00 35.98 3.24
1233 1305 1.999735 CCATTACGTCGTGTGCAATCT 59.000 47.619 8.47 0.00 0.00 2.40
1285 1357 3.799755 GTCAATGCCGGCACCGAC 61.800 66.667 35.50 33.62 42.83 4.79
1302 1374 3.807538 CTGCATGGCACGTCTGGC 61.808 66.667 0.00 0.00 43.44 4.85
1312 1384 1.228154 ACGTCTGGCTTTTGACCCC 60.228 57.895 0.00 0.00 0.00 4.95
1320 1392 2.124236 TTTTGACCCCGCCGTGTT 60.124 55.556 0.00 0.00 0.00 3.32
1353 1425 0.109226 GTGTTCGAGTTCTCCGAGGG 60.109 60.000 0.00 0.00 37.35 4.30
1357 1429 0.034380 TCGAGTTCTCCGAGGGTCAT 60.034 55.000 0.00 0.00 0.00 3.06
1360 1432 1.825474 GAGTTCTCCGAGGGTCATGAA 59.175 52.381 0.00 0.00 0.00 2.57
1363 1435 3.264450 AGTTCTCCGAGGGTCATGAAATT 59.736 43.478 0.00 0.00 0.00 1.82
1364 1436 3.543680 TCTCCGAGGGTCATGAAATTC 57.456 47.619 0.00 0.00 0.00 2.17
1384 1456 2.070039 CCAGGCCGGAATGGAGGTA 61.070 63.158 18.11 0.00 42.00 3.08
1414 1486 3.833559 AAAACAGGAGGATGGGTTCAT 57.166 42.857 0.00 0.00 36.09 2.57
1423 1495 4.352298 GGAGGATGGGTTCATAAGGAGAAT 59.648 45.833 0.00 0.00 32.98 2.40
1461 1533 6.150976 ACGGAAGATGATGAAGCATTTGTTTA 59.849 34.615 0.00 0.00 0.00 2.01
1514 1586 2.987413 TAACGGCTGTCTGCATTTTG 57.013 45.000 0.00 0.00 45.15 2.44
1516 1588 1.032014 ACGGCTGTCTGCATTTTGTT 58.968 45.000 3.96 0.00 45.15 2.83
1517 1589 1.269206 ACGGCTGTCTGCATTTTGTTG 60.269 47.619 3.96 0.00 45.15 3.33
1526 1598 2.933906 CTGCATTTTGTTGCCATGGATC 59.066 45.455 18.40 5.07 42.06 3.36
1527 1599 2.282407 GCATTTTGTTGCCATGGATCC 58.718 47.619 18.40 4.20 36.60 3.36
1528 1600 2.542597 CATTTTGTTGCCATGGATCCG 58.457 47.619 18.40 0.00 0.00 4.18
1530 1602 0.969917 TTTGTTGCCATGGATCCGGG 60.970 55.000 18.40 16.13 0.00 5.73
1533 1605 0.110486 GTTGCCATGGATCCGGGTAT 59.890 55.000 18.40 0.57 0.00 2.73
1534 1606 1.349688 GTTGCCATGGATCCGGGTATA 59.650 52.381 18.40 7.67 0.00 1.47
1535 1607 1.275666 TGCCATGGATCCGGGTATAG 58.724 55.000 18.40 0.00 0.00 1.31
1540 1612 3.366396 CATGGATCCGGGTATAGTAGCT 58.634 50.000 7.39 0.00 0.00 3.32
1542 1614 1.477295 GGATCCGGGTATAGTAGCTGC 59.523 57.143 0.00 0.00 0.00 5.25
1552 1624 0.611062 TAGTAGCTGCGGTGGACACT 60.611 55.000 0.00 0.00 0.00 3.55
1573 1645 2.225017 TGAGGGGAAAACATGGAGGAAC 60.225 50.000 0.00 0.00 0.00 3.62
1587 1659 0.912486 AGGAACATACCTGTCCCTGC 59.088 55.000 0.00 0.00 38.95 4.85
1588 1660 0.912486 GGAACATACCTGTCCCTGCT 59.088 55.000 0.00 0.00 33.36 4.24
1589 1661 1.407437 GGAACATACCTGTCCCTGCTG 60.407 57.143 0.00 0.00 33.36 4.41
1595 1667 2.433446 CTGTCCCTGCTGTTGGCT 59.567 61.111 0.00 0.00 42.39 4.75
1598 1670 0.835971 TGTCCCTGCTGTTGGCTCTA 60.836 55.000 0.00 0.00 42.39 2.43
1601 1673 1.210478 TCCCTGCTGTTGGCTCTATTC 59.790 52.381 0.00 0.00 42.39 1.75
1602 1674 1.673168 CCTGCTGTTGGCTCTATTCC 58.327 55.000 0.00 0.00 42.39 3.01
1626 1698 4.020751 TCTCATTCAGAAGTCTCAGGGTTG 60.021 45.833 0.00 0.00 0.00 3.77
1636 1708 3.319122 AGTCTCAGGGTTGTTTGCATTTC 59.681 43.478 0.00 0.00 0.00 2.17
1638 1710 1.139163 CAGGGTTGTTTGCATTTCGC 58.861 50.000 0.00 0.00 42.89 4.70
1641 1713 0.858583 GGTTGTTTGCATTTCGCCAC 59.141 50.000 0.00 0.00 41.33 5.01
1646 1718 2.606725 TGTTTGCATTTCGCCACTTTTG 59.393 40.909 0.00 0.00 41.33 2.44
1649 1721 3.717400 TGCATTTCGCCACTTTTGTTA 57.283 38.095 0.00 0.00 41.33 2.41
1654 1726 5.220491 GCATTTCGCCACTTTTGTTAAAACA 60.220 36.000 0.00 0.00 33.48 2.83
1668 1743 8.472007 TTTGTTAAAACAGATGGTATGGTTCT 57.528 30.769 0.00 0.00 40.50 3.01
1669 1744 7.447374 TGTTAAAACAGATGGTATGGTTCTG 57.553 36.000 0.00 0.00 42.05 3.02
1675 1750 4.534500 ACAGATGGTATGGTTCTGTTGGTA 59.466 41.667 0.00 0.00 45.88 3.25
1680 1755 5.697067 TGGTATGGTTCTGTTGGTAGTTTT 58.303 37.500 0.00 0.00 0.00 2.43
1732 1807 4.256920 GGATATTGAAGCATAGCACCGAT 58.743 43.478 0.00 0.00 0.00 4.18
1754 1829 7.440556 CCGATGCTTCATATATATTTGGAGAGG 59.559 40.741 13.92 7.92 0.00 3.69
1773 1848 7.182060 GGAGAGGGAGAGATTGATCTTATACT 58.818 42.308 0.00 0.00 37.25 2.12
1811 1886 2.223112 GCAATGCATCCAGACTGTAACG 60.223 50.000 0.00 0.00 0.00 3.18
1831 1906 2.673368 CGTGATCTTCTTAACTGTGGGC 59.327 50.000 0.00 0.00 0.00 5.36
1898 1973 6.013898 AGTTCAAGAGATCTGTGATCTTGGAA 60.014 38.462 17.06 11.33 46.38 3.53
1908 1983 3.057245 TGTGATCTTGGAAGAGACGACAG 60.057 47.826 0.00 0.00 38.66 3.51
1976 2051 7.602517 ACTCTGCACTAGTGACATAAAAATC 57.397 36.000 27.08 5.03 0.00 2.17
2101 2286 6.790319 AGAGTGCCCCTTTTTATTTCTAAGA 58.210 36.000 0.00 0.00 0.00 2.10
2147 2332 5.888982 ATCGGGTCCATTATTACTGAACT 57.111 39.130 0.00 0.00 0.00 3.01
2236 2425 2.293170 GGCCTTGCCTTCAATACTCTC 58.707 52.381 0.00 0.00 46.69 3.20
2246 2435 8.001881 TGCCTTCAATACTCTCTACTCTTTAG 57.998 38.462 0.00 0.00 0.00 1.85
2247 2436 7.834681 TGCCTTCAATACTCTCTACTCTTTAGA 59.165 37.037 0.00 0.00 0.00 2.10
2249 2438 9.621629 CCTTCAATACTCTCTACTCTTTAGAGA 57.378 37.037 13.47 9.98 45.42 3.10
2310 2499 0.813184 AACTTCAATGATGGCAGCGG 59.187 50.000 0.00 0.00 0.00 5.52
2336 2525 8.966194 GTTCTTGTCTTGTCAAGTAAGTAGTAC 58.034 37.037 21.03 9.59 43.44 2.73
2337 2526 8.461249 TCTTGTCTTGTCAAGTAAGTAGTACT 57.539 34.615 21.03 0.00 45.48 2.73
2338 2527 8.566260 TCTTGTCTTGTCAAGTAAGTAGTACTC 58.434 37.037 21.03 0.00 42.55 2.59
2339 2528 7.211966 TGTCTTGTCAAGTAAGTAGTACTCC 57.788 40.000 12.30 0.00 42.55 3.85
2340 2529 6.208204 TGTCTTGTCAAGTAAGTAGTACTCCC 59.792 42.308 12.30 0.00 42.55 4.30
2341 2530 6.433716 GTCTTGTCAAGTAAGTAGTACTCCCT 59.566 42.308 12.30 0.00 42.55 4.20
2342 2531 6.658391 TCTTGTCAAGTAAGTAGTACTCCCTC 59.342 42.308 12.30 0.00 42.55 4.30
2343 2532 5.259632 TGTCAAGTAAGTAGTACTCCCTCC 58.740 45.833 2.58 0.00 42.55 4.30
2344 2533 4.335037 GTCAAGTAAGTAGTACTCCCTCCG 59.665 50.000 2.58 0.00 42.55 4.63
2345 2534 4.018960 TCAAGTAAGTAGTACTCCCTCCGT 60.019 45.833 2.58 0.00 42.55 4.69
2346 2535 4.149511 AGTAAGTAGTACTCCCTCCGTC 57.850 50.000 2.58 0.00 38.84 4.79
2347 2536 3.521126 AGTAAGTAGTACTCCCTCCGTCA 59.479 47.826 2.58 0.00 38.84 4.35
2348 2537 2.416680 AGTAGTACTCCCTCCGTCAC 57.583 55.000 0.00 0.00 0.00 3.67
2349 2538 1.632409 AGTAGTACTCCCTCCGTCACA 59.368 52.381 0.00 0.00 0.00 3.58
2350 2539 2.040813 AGTAGTACTCCCTCCGTCACAA 59.959 50.000 0.00 0.00 0.00 3.33
2351 2540 2.005370 AGTACTCCCTCCGTCACAAA 57.995 50.000 0.00 0.00 0.00 2.83
2352 2541 2.322658 AGTACTCCCTCCGTCACAAAA 58.677 47.619 0.00 0.00 0.00 2.44
2353 2542 2.904434 AGTACTCCCTCCGTCACAAAAT 59.096 45.455 0.00 0.00 0.00 1.82
2354 2543 2.951229 ACTCCCTCCGTCACAAAATT 57.049 45.000 0.00 0.00 0.00 1.82
2355 2544 2.779506 ACTCCCTCCGTCACAAAATTC 58.220 47.619 0.00 0.00 0.00 2.17
2356 2545 2.372172 ACTCCCTCCGTCACAAAATTCT 59.628 45.455 0.00 0.00 0.00 2.40
2357 2546 3.181443 ACTCCCTCCGTCACAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
2358 2547 3.146066 TCCCTCCGTCACAAAATTCTTG 58.854 45.455 0.61 0.61 0.00 3.02
2359 2548 2.884639 CCCTCCGTCACAAAATTCTTGT 59.115 45.455 1.64 1.64 0.00 3.16
2360 2549 3.058224 CCCTCCGTCACAAAATTCTTGTC 60.058 47.826 3.87 0.00 0.00 3.18
2361 2550 3.815401 CCTCCGTCACAAAATTCTTGTCT 59.185 43.478 3.87 0.00 0.00 3.41
2362 2551 4.275936 CCTCCGTCACAAAATTCTTGTCTT 59.724 41.667 3.87 0.00 0.00 3.01
2363 2552 5.468746 CCTCCGTCACAAAATTCTTGTCTTA 59.531 40.000 3.87 0.00 0.00 2.10
2364 2553 6.347725 CCTCCGTCACAAAATTCTTGTCTTAG 60.348 42.308 3.87 0.00 0.00 2.18
2365 2554 6.285224 TCCGTCACAAAATTCTTGTCTTAGA 58.715 36.000 3.87 0.00 0.00 2.10
2366 2555 6.934645 TCCGTCACAAAATTCTTGTCTTAGAT 59.065 34.615 3.87 0.00 0.00 1.98
2367 2556 7.444183 TCCGTCACAAAATTCTTGTCTTAGATT 59.556 33.333 3.87 0.00 0.00 2.40
2368 2557 8.076178 CCGTCACAAAATTCTTGTCTTAGATTT 58.924 33.333 3.87 0.00 0.00 2.17
2369 2558 8.895845 CGTCACAAAATTCTTGTCTTAGATTTG 58.104 33.333 3.87 2.00 33.47 2.32
2370 2559 9.736023 GTCACAAAATTCTTGTCTTAGATTTGT 57.264 29.630 3.04 3.04 37.63 2.83
2371 2560 9.950680 TCACAAAATTCTTGTCTTAGATTTGTC 57.049 29.630 5.28 0.00 36.19 3.18
2372 2561 9.956720 CACAAAATTCTTGTCTTAGATTTGTCT 57.043 29.630 5.28 0.00 36.19 3.41
2415 2604 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
2416 2605 6.460781 ACTAAAACGTGACTTGATACATCCA 58.539 36.000 0.00 0.00 0.00 3.41
2417 2606 7.103641 ACTAAAACGTGACTTGATACATCCAT 58.896 34.615 0.00 0.00 0.00 3.41
2418 2607 8.255206 ACTAAAACGTGACTTGATACATCCATA 58.745 33.333 0.00 0.00 0.00 2.74
2419 2608 9.261180 CTAAAACGTGACTTGATACATCCATAT 57.739 33.333 0.00 0.00 0.00 1.78
2420 2609 7.715265 AAACGTGACTTGATACATCCATATC 57.285 36.000 0.00 0.00 32.95 1.63
2421 2610 6.656632 ACGTGACTTGATACATCCATATCT 57.343 37.500 0.00 0.00 33.42 1.98
2422 2611 7.761038 ACGTGACTTGATACATCCATATCTA 57.239 36.000 0.00 0.00 33.42 1.98
2423 2612 7.821652 ACGTGACTTGATACATCCATATCTAG 58.178 38.462 0.00 0.00 39.14 2.43
2424 2613 7.665974 ACGTGACTTGATACATCCATATCTAGA 59.334 37.037 10.02 0.00 36.88 2.43
2425 2614 7.965655 CGTGACTTGATACATCCATATCTAGAC 59.034 40.741 0.00 5.82 36.88 2.59
2426 2615 8.797438 GTGACTTGATACATCCATATCTAGACA 58.203 37.037 0.00 7.78 36.88 3.41
2427 2616 9.367160 TGACTTGATACATCCATATCTAGACAA 57.633 33.333 0.00 0.00 36.75 3.18
2448 2637 9.546428 AGACAAATTTAAGACAAGAATTTTGGG 57.454 29.630 0.00 0.00 33.39 4.12
2449 2638 9.541143 GACAAATTTAAGACAAGAATTTTGGGA 57.459 29.630 0.00 0.00 33.39 4.37
2450 2639 9.325198 ACAAATTTAAGACAAGAATTTTGGGAC 57.675 29.630 0.00 0.00 33.39 4.46
2451 2640 8.487176 CAAATTTAAGACAAGAATTTTGGGACG 58.513 33.333 0.00 0.00 32.35 4.79
2452 2641 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
2453 2642 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2454 2643 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2455 2644 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2456 2645 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2457 2646 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2475 2664 6.404844 CGGAGGGAGTATATGCTAGTGTATTG 60.405 46.154 0.00 0.00 0.00 1.90
2499 2688 2.959465 ACTAGCTGAAAGGGCAAAGT 57.041 45.000 0.00 0.00 0.00 2.66
2508 2697 5.738783 GCTGAAAGGGCAAAGTTGTGAATTA 60.739 40.000 0.00 0.00 0.00 1.40
2534 2723 1.561076 TGCATGTATCTTGGCTCAGGT 59.439 47.619 0.00 0.00 0.00 4.00
2581 2770 5.374071 AGTTTTGTTGTTGAGGGTAGGTAG 58.626 41.667 0.00 0.00 0.00 3.18
2601 2790 7.686434 AGGTAGCTGAGGAAACAAAATACTTA 58.314 34.615 0.00 0.00 0.00 2.24
2603 2792 8.398665 GGTAGCTGAGGAAACAAAATACTTATG 58.601 37.037 0.00 0.00 0.00 1.90
2604 2793 6.856895 AGCTGAGGAAACAAAATACTTATGC 58.143 36.000 0.00 0.00 0.00 3.14
2637 2833 7.672240 TGGTTTACATTTCATTTACCTTTCCC 58.328 34.615 0.00 0.00 0.00 3.97
2658 2855 5.535406 TCCCGCATTTTTAACCTGTTTTAGA 59.465 36.000 0.00 0.00 0.00 2.10
2737 2934 1.688735 TCACCTGAGACCTGACAGTTG 59.311 52.381 0.93 0.00 32.93 3.16
2740 2937 1.967066 CCTGAGACCTGACAGTTGTCT 59.033 52.381 12.55 12.55 44.99 3.41
2799 2996 5.006386 AGTGCTTTTCTTCATTAGGAGGTG 58.994 41.667 0.00 0.00 0.00 4.00
2809 3007 1.952621 TTAGGAGGTGGAGACCCTTG 58.047 55.000 0.00 0.00 44.40 3.61
2811 3009 0.790993 AGGAGGTGGAGACCCTTGTA 59.209 55.000 0.00 0.00 44.40 2.41
2834 3032 5.529289 ACAAGGACTGGATGATACCTAAGA 58.471 41.667 0.00 0.00 0.00 2.10
2836 3034 4.145807 AGGACTGGATGATACCTAAGACG 58.854 47.826 0.00 0.00 0.00 4.18
2875 3073 1.341383 CCCTTGAGGTTGGATTCAGGG 60.341 57.143 0.00 0.00 39.53 4.45
2999 3197 6.778069 AGATAAATAAGTCGTGAGGAGGATGA 59.222 38.462 0.00 0.00 0.00 2.92
3011 3209 2.902486 AGGAGGATGATCGTATGCATGT 59.098 45.455 10.16 0.00 0.00 3.21
3052 3250 6.391227 ACAATTTTCTTCACTTCACCGAAT 57.609 33.333 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.565764 TCTGCTTCCGAAATCATCCAT 57.434 42.857 0.00 0.00 0.00 3.41
1 2 3.565764 ATCTGCTTCCGAAATCATCCA 57.434 42.857 0.00 0.00 0.00 3.41
2 3 3.879295 TCAATCTGCTTCCGAAATCATCC 59.121 43.478 0.00 0.00 0.00 3.51
3 4 5.490139 TTCAATCTGCTTCCGAAATCATC 57.510 39.130 0.00 0.00 0.00 2.92
4 5 4.337555 CCTTCAATCTGCTTCCGAAATCAT 59.662 41.667 0.00 0.00 0.00 2.45
5 6 3.691118 CCTTCAATCTGCTTCCGAAATCA 59.309 43.478 0.00 0.00 0.00 2.57
6 7 3.065925 CCCTTCAATCTGCTTCCGAAATC 59.934 47.826 0.00 0.00 0.00 2.17
7 8 3.019564 CCCTTCAATCTGCTTCCGAAAT 58.980 45.455 0.00 0.00 0.00 2.17
8 9 2.224769 ACCCTTCAATCTGCTTCCGAAA 60.225 45.455 0.00 0.00 0.00 3.46
9 10 1.351017 ACCCTTCAATCTGCTTCCGAA 59.649 47.619 0.00 0.00 0.00 4.30
10 11 0.984230 ACCCTTCAATCTGCTTCCGA 59.016 50.000 0.00 0.00 0.00 4.55
11 12 1.089920 CACCCTTCAATCTGCTTCCG 58.910 55.000 0.00 0.00 0.00 4.30
12 13 1.004745 TCCACCCTTCAATCTGCTTCC 59.995 52.381 0.00 0.00 0.00 3.46
13 14 2.496899 TCCACCCTTCAATCTGCTTC 57.503 50.000 0.00 0.00 0.00 3.86
14 15 2.108952 ACTTCCACCCTTCAATCTGCTT 59.891 45.455 0.00 0.00 0.00 3.91
15 16 1.707427 ACTTCCACCCTTCAATCTGCT 59.293 47.619 0.00 0.00 0.00 4.24
16 17 1.815003 CACTTCCACCCTTCAATCTGC 59.185 52.381 0.00 0.00 0.00 4.26
17 18 1.815003 GCACTTCCACCCTTCAATCTG 59.185 52.381 0.00 0.00 0.00 2.90
18 19 1.707427 AGCACTTCCACCCTTCAATCT 59.293 47.619 0.00 0.00 0.00 2.40
19 20 2.206576 AGCACTTCCACCCTTCAATC 57.793 50.000 0.00 0.00 0.00 2.67
20 21 2.158475 TCAAGCACTTCCACCCTTCAAT 60.158 45.455 0.00 0.00 0.00 2.57
21 22 1.214175 TCAAGCACTTCCACCCTTCAA 59.786 47.619 0.00 0.00 0.00 2.69
22 23 0.843309 TCAAGCACTTCCACCCTTCA 59.157 50.000 0.00 0.00 0.00 3.02
23 24 1.528129 CTCAAGCACTTCCACCCTTC 58.472 55.000 0.00 0.00 0.00 3.46
24 25 0.538287 GCTCAAGCACTTCCACCCTT 60.538 55.000 0.00 0.00 41.59 3.95
25 26 1.073897 GCTCAAGCACTTCCACCCT 59.926 57.895 0.00 0.00 41.59 4.34
26 27 3.673599 GCTCAAGCACTTCCACCC 58.326 61.111 0.00 0.00 41.59 4.61
36 37 0.249657 CTCCCCTACGATGCTCAAGC 60.250 60.000 0.00 0.00 42.50 4.01
37 38 1.339610 CTCTCCCCTACGATGCTCAAG 59.660 57.143 0.00 0.00 0.00 3.02
38 39 1.063942 TCTCTCCCCTACGATGCTCAA 60.064 52.381 0.00 0.00 0.00 3.02
39 40 0.551396 TCTCTCCCCTACGATGCTCA 59.449 55.000 0.00 0.00 0.00 4.26
40 41 1.202830 TCTCTCTCCCCTACGATGCTC 60.203 57.143 0.00 0.00 0.00 4.26
41 42 0.847373 TCTCTCTCCCCTACGATGCT 59.153 55.000 0.00 0.00 0.00 3.79
42 43 0.955905 GTCTCTCTCCCCTACGATGC 59.044 60.000 0.00 0.00 0.00 3.91
43 44 1.202663 TCGTCTCTCTCCCCTACGATG 60.203 57.143 0.00 0.00 37.63 3.84
44 45 1.071071 CTCGTCTCTCTCCCCTACGAT 59.929 57.143 0.00 0.00 41.24 3.73
45 46 0.464870 CTCGTCTCTCTCCCCTACGA 59.535 60.000 0.00 0.00 39.99 3.43
46 47 0.464870 TCTCGTCTCTCTCCCCTACG 59.535 60.000 0.00 0.00 34.99 3.51
47 48 2.774687 GATCTCGTCTCTCTCCCCTAC 58.225 57.143 0.00 0.00 0.00 3.18
48 49 1.345089 CGATCTCGTCTCTCTCCCCTA 59.655 57.143 0.00 0.00 34.11 3.53
49 50 0.107831 CGATCTCGTCTCTCTCCCCT 59.892 60.000 0.00 0.00 34.11 4.79
50 51 0.107081 TCGATCTCGTCTCTCTCCCC 59.893 60.000 0.00 0.00 40.80 4.81
51 52 1.871039 CTTCGATCTCGTCTCTCTCCC 59.129 57.143 0.00 0.00 40.80 4.30
52 53 1.871039 CCTTCGATCTCGTCTCTCTCC 59.129 57.143 0.00 0.00 40.80 3.71
53 54 1.263217 GCCTTCGATCTCGTCTCTCTC 59.737 57.143 0.00 0.00 40.80 3.20
54 55 1.305201 GCCTTCGATCTCGTCTCTCT 58.695 55.000 0.00 0.00 40.80 3.10
55 56 0.041663 CGCCTTCGATCTCGTCTCTC 60.042 60.000 0.00 0.00 40.80 3.20
56 57 0.462225 TCGCCTTCGATCTCGTCTCT 60.462 55.000 0.00 0.00 40.21 3.10
57 58 0.041663 CTCGCCTTCGATCTCGTCTC 60.042 60.000 0.00 0.00 44.56 3.36
58 59 0.462225 TCTCGCCTTCGATCTCGTCT 60.462 55.000 0.00 0.00 44.56 4.18
59 60 0.377554 TTCTCGCCTTCGATCTCGTC 59.622 55.000 0.00 0.00 44.56 4.20
60 61 0.809385 TTTCTCGCCTTCGATCTCGT 59.191 50.000 0.00 0.00 44.56 4.18
61 62 1.584308 GTTTTCTCGCCTTCGATCTCG 59.416 52.381 0.00 0.00 44.56 4.04
62 63 1.584308 CGTTTTCTCGCCTTCGATCTC 59.416 52.381 0.00 0.00 44.56 2.75
63 64 1.630148 CGTTTTCTCGCCTTCGATCT 58.370 50.000 0.00 0.00 44.56 2.75
64 65 0.645868 CCGTTTTCTCGCCTTCGATC 59.354 55.000 0.00 0.00 44.56 3.69
65 66 0.739813 CCCGTTTTCTCGCCTTCGAT 60.740 55.000 0.00 0.00 44.56 3.59
66 67 1.373748 CCCGTTTTCTCGCCTTCGA 60.374 57.895 0.00 0.00 43.28 3.71
67 68 1.352156 CTCCCGTTTTCTCGCCTTCG 61.352 60.000 0.00 0.00 0.00 3.79
68 69 0.037605 TCTCCCGTTTTCTCGCCTTC 60.038 55.000 0.00 0.00 0.00 3.46
69 70 0.037232 CTCTCCCGTTTTCTCGCCTT 60.037 55.000 0.00 0.00 0.00 4.35
70 71 1.186267 ACTCTCCCGTTTTCTCGCCT 61.186 55.000 0.00 0.00 0.00 5.52
71 72 0.529378 TACTCTCCCGTTTTCTCGCC 59.471 55.000 0.00 0.00 0.00 5.54
72 73 1.471684 TCTACTCTCCCGTTTTCTCGC 59.528 52.381 0.00 0.00 0.00 5.03
73 74 3.696898 CATCTACTCTCCCGTTTTCTCG 58.303 50.000 0.00 0.00 0.00 4.04
74 75 3.449632 GCATCTACTCTCCCGTTTTCTC 58.550 50.000 0.00 0.00 0.00 2.87
75 76 2.168728 GGCATCTACTCTCCCGTTTTCT 59.831 50.000 0.00 0.00 0.00 2.52
76 77 2.093658 TGGCATCTACTCTCCCGTTTTC 60.094 50.000 0.00 0.00 0.00 2.29
77 78 1.906574 TGGCATCTACTCTCCCGTTTT 59.093 47.619 0.00 0.00 0.00 2.43
78 79 1.482593 CTGGCATCTACTCTCCCGTTT 59.517 52.381 0.00 0.00 0.00 3.60
79 80 1.115467 CTGGCATCTACTCTCCCGTT 58.885 55.000 0.00 0.00 0.00 4.44
80 81 0.259065 TCTGGCATCTACTCTCCCGT 59.741 55.000 0.00 0.00 0.00 5.28
81 82 1.626686 ATCTGGCATCTACTCTCCCG 58.373 55.000 0.00 0.00 0.00 5.14
82 83 2.029470 CGAATCTGGCATCTACTCTCCC 60.029 54.545 0.00 0.00 0.00 4.30
83 84 2.625790 ACGAATCTGGCATCTACTCTCC 59.374 50.000 0.00 0.00 0.00 3.71
84 85 4.047822 CAACGAATCTGGCATCTACTCTC 58.952 47.826 0.00 0.00 0.00 3.20
85 86 3.701542 TCAACGAATCTGGCATCTACTCT 59.298 43.478 0.00 0.00 0.00 3.24
86 87 4.046938 TCAACGAATCTGGCATCTACTC 57.953 45.455 0.00 0.00 0.00 2.59
87 88 3.181471 CCTCAACGAATCTGGCATCTACT 60.181 47.826 0.00 0.00 0.00 2.57
88 89 3.126831 CCTCAACGAATCTGGCATCTAC 58.873 50.000 0.00 0.00 0.00 2.59
89 90 2.103094 CCCTCAACGAATCTGGCATCTA 59.897 50.000 0.00 0.00 0.00 1.98
90 91 1.134280 CCCTCAACGAATCTGGCATCT 60.134 52.381 0.00 0.00 0.00 2.90
91 92 1.303309 CCCTCAACGAATCTGGCATC 58.697 55.000 0.00 0.00 0.00 3.91
92 93 0.107017 CCCCTCAACGAATCTGGCAT 60.107 55.000 0.00 0.00 0.00 4.40
93 94 1.299648 CCCCTCAACGAATCTGGCA 59.700 57.895 0.00 0.00 0.00 4.92
94 95 0.322546 AACCCCTCAACGAATCTGGC 60.323 55.000 0.00 0.00 0.00 4.85
95 96 1.739067 GAACCCCTCAACGAATCTGG 58.261 55.000 0.00 0.00 0.00 3.86
96 97 1.067142 TCGAACCCCTCAACGAATCTG 60.067 52.381 0.00 0.00 0.00 2.90
97 98 1.263356 TCGAACCCCTCAACGAATCT 58.737 50.000 0.00 0.00 0.00 2.40
98 99 1.730612 GTTCGAACCCCTCAACGAATC 59.269 52.381 17.68 0.00 44.23 2.52
99 100 1.071071 TGTTCGAACCCCTCAACGAAT 59.929 47.619 24.78 0.00 44.23 3.34
100 101 0.464870 TGTTCGAACCCCTCAACGAA 59.535 50.000 24.78 0.00 41.28 3.85
101 102 0.464870 TTGTTCGAACCCCTCAACGA 59.535 50.000 24.78 0.26 0.00 3.85
102 103 1.519408 ATTGTTCGAACCCCTCAACG 58.481 50.000 24.78 0.00 0.00 4.10
103 104 2.882137 TCAATTGTTCGAACCCCTCAAC 59.118 45.455 24.78 0.00 0.00 3.18
104 105 3.216187 TCAATTGTTCGAACCCCTCAA 57.784 42.857 24.78 12.68 0.00 3.02
105 106 2.940994 TCAATTGTTCGAACCCCTCA 57.059 45.000 24.78 3.44 0.00 3.86
106 107 4.783764 AAATCAATTGTTCGAACCCCTC 57.216 40.909 24.78 0.48 0.00 4.30
107 108 5.714806 ACATAAATCAATTGTTCGAACCCCT 59.285 36.000 24.78 7.15 0.00 4.79
108 109 5.961272 ACATAAATCAATTGTTCGAACCCC 58.039 37.500 24.78 1.28 0.00 4.95
109 110 7.812669 AGAAACATAAATCAATTGTTCGAACCC 59.187 33.333 24.78 2.06 32.66 4.11
110 111 8.638565 CAGAAACATAAATCAATTGTTCGAACC 58.361 33.333 24.78 8.19 32.66 3.62
111 112 8.155923 GCAGAAACATAAATCAATTGTTCGAAC 58.844 33.333 21.42 21.42 32.66 3.95
112 113 7.864882 TGCAGAAACATAAATCAATTGTTCGAA 59.135 29.630 5.13 0.00 32.66 3.71
113 114 7.366513 TGCAGAAACATAAATCAATTGTTCGA 58.633 30.769 5.13 0.00 32.66 3.71
114 115 7.565450 TGCAGAAACATAAATCAATTGTTCG 57.435 32.000 5.13 0.00 32.66 3.95
115 116 8.763356 TGTTGCAGAAACATAAATCAATTGTTC 58.237 29.630 5.13 0.00 43.96 3.18
116 117 8.659925 TGTTGCAGAAACATAAATCAATTGTT 57.340 26.923 5.13 0.00 43.96 2.83
130 131 2.340337 GGGCAATGATGTTGCAGAAAC 58.660 47.619 13.91 0.00 46.58 2.78
131 132 1.275856 GGGGCAATGATGTTGCAGAAA 59.724 47.619 13.91 0.00 46.58 2.52
132 133 0.896923 GGGGCAATGATGTTGCAGAA 59.103 50.000 13.91 0.00 46.58 3.02
133 134 0.251698 TGGGGCAATGATGTTGCAGA 60.252 50.000 13.91 0.00 46.58 4.26
134 135 0.108520 GTGGGGCAATGATGTTGCAG 60.109 55.000 13.91 0.00 46.58 4.41
135 136 0.830866 TGTGGGGCAATGATGTTGCA 60.831 50.000 13.91 0.00 46.58 4.08
136 137 0.390209 GTGTGGGGCAATGATGTTGC 60.390 55.000 4.27 4.27 44.22 4.17
137 138 0.967662 TGTGTGGGGCAATGATGTTG 59.032 50.000 0.00 0.00 0.00 3.33
138 139 1.551430 CATGTGTGGGGCAATGATGTT 59.449 47.619 0.00 0.00 0.00 2.71
139 140 1.187974 CATGTGTGGGGCAATGATGT 58.812 50.000 0.00 0.00 0.00 3.06
140 141 1.134936 CACATGTGTGGGGCAATGATG 60.135 52.381 18.03 0.00 42.10 3.07
141 142 1.187974 CACATGTGTGGGGCAATGAT 58.812 50.000 18.03 0.00 42.10 2.45
142 143 2.656049 CACATGTGTGGGGCAATGA 58.344 52.632 18.03 0.00 42.10 2.57
151 152 2.557805 GCAGCGACCACATGTGTG 59.442 61.111 23.79 15.75 45.23 3.82
152 153 3.043713 CGCAGCGACCACATGTGT 61.044 61.111 23.79 12.31 0.00 3.72
153 154 2.733671 CTCGCAGCGACCACATGTG 61.734 63.158 19.31 19.31 0.00 3.21
154 155 2.433145 CTCGCAGCGACCACATGT 60.433 61.111 15.11 0.00 0.00 3.21
155 156 2.125952 TCTCGCAGCGACCACATG 60.126 61.111 15.11 2.88 0.00 3.21
156 157 2.182791 CTCTCGCAGCGACCACAT 59.817 61.111 15.11 0.00 0.00 3.21
157 158 4.056125 CCTCTCGCAGCGACCACA 62.056 66.667 15.11 0.00 0.00 4.17
166 167 2.334946 GCACCAATTGCCTCTCGCA 61.335 57.895 0.00 0.00 46.63 5.10
167 168 2.486966 GCACCAATTGCCTCTCGC 59.513 61.111 0.00 0.00 46.63 5.03
175 176 1.250154 ATGGGACCACGCACCAATTG 61.250 55.000 0.00 0.00 41.49 2.32
176 177 1.076549 ATGGGACCACGCACCAATT 59.923 52.632 0.00 0.00 41.49 2.32
177 178 1.678635 CATGGGACCACGCACCAAT 60.679 57.895 0.00 0.00 41.49 3.16
178 179 2.282110 CATGGGACCACGCACCAA 60.282 61.111 0.00 0.00 41.49 3.67
179 180 4.343323 CCATGGGACCACGCACCA 62.343 66.667 2.85 0.00 41.49 4.17
215 216 2.306255 TTTACTCCATCCGCCGCCTC 62.306 60.000 0.00 0.00 0.00 4.70
216 217 2.311688 CTTTACTCCATCCGCCGCCT 62.312 60.000 0.00 0.00 0.00 5.52
217 218 1.887707 CTTTACTCCATCCGCCGCC 60.888 63.158 0.00 0.00 0.00 6.13
218 219 0.461339 TTCTTTACTCCATCCGCCGC 60.461 55.000 0.00 0.00 0.00 6.53
219 220 2.018542 TTTCTTTACTCCATCCGCCG 57.981 50.000 0.00 0.00 0.00 6.46
220 221 3.945285 TGATTTTCTTTACTCCATCCGCC 59.055 43.478 0.00 0.00 0.00 6.13
221 222 4.636206 ACTGATTTTCTTTACTCCATCCGC 59.364 41.667 0.00 0.00 0.00 5.54
222 223 5.005779 CGACTGATTTTCTTTACTCCATCCG 59.994 44.000 0.00 0.00 0.00 4.18
223 224 5.294552 CCGACTGATTTTCTTTACTCCATCC 59.705 44.000 0.00 0.00 0.00 3.51
224 225 5.294552 CCCGACTGATTTTCTTTACTCCATC 59.705 44.000 0.00 0.00 0.00 3.51
225 226 5.186198 CCCGACTGATTTTCTTTACTCCAT 58.814 41.667 0.00 0.00 0.00 3.41
226 227 4.041198 ACCCGACTGATTTTCTTTACTCCA 59.959 41.667 0.00 0.00 0.00 3.86
227 228 4.392138 CACCCGACTGATTTTCTTTACTCC 59.608 45.833 0.00 0.00 0.00 3.85
228 229 5.235516 TCACCCGACTGATTTTCTTTACTC 58.764 41.667 0.00 0.00 0.00 2.59
229 230 5.223449 TCACCCGACTGATTTTCTTTACT 57.777 39.130 0.00 0.00 0.00 2.24
230 231 5.934935 TTCACCCGACTGATTTTCTTTAC 57.065 39.130 0.00 0.00 0.00 2.01
231 232 8.801882 ATTATTCACCCGACTGATTTTCTTTA 57.198 30.769 0.00 0.00 0.00 1.85
232 233 7.703058 ATTATTCACCCGACTGATTTTCTTT 57.297 32.000 0.00 0.00 0.00 2.52
233 234 8.047310 ACTATTATTCACCCGACTGATTTTCTT 58.953 33.333 0.00 0.00 0.00 2.52
234 235 7.495934 CACTATTATTCACCCGACTGATTTTCT 59.504 37.037 0.00 0.00 0.00 2.52
235 236 7.280205 ACACTATTATTCACCCGACTGATTTTC 59.720 37.037 0.00 0.00 0.00 2.29
236 237 7.110155 ACACTATTATTCACCCGACTGATTTT 58.890 34.615 0.00 0.00 0.00 1.82
237 238 6.650120 ACACTATTATTCACCCGACTGATTT 58.350 36.000 0.00 0.00 0.00 2.17
238 239 6.235231 ACACTATTATTCACCCGACTGATT 57.765 37.500 0.00 0.00 0.00 2.57
239 240 5.871396 ACACTATTATTCACCCGACTGAT 57.129 39.130 0.00 0.00 0.00 2.90
240 241 5.670792 AACACTATTATTCACCCGACTGA 57.329 39.130 0.00 0.00 0.00 3.41
241 242 6.183360 GGAAAACACTATTATTCACCCGACTG 60.183 42.308 0.00 0.00 0.00 3.51
242 243 5.878669 GGAAAACACTATTATTCACCCGACT 59.121 40.000 0.00 0.00 0.00 4.18
243 244 5.878669 AGGAAAACACTATTATTCACCCGAC 59.121 40.000 0.00 0.00 0.00 4.79
244 245 6.057321 AGGAAAACACTATTATTCACCCGA 57.943 37.500 0.00 0.00 0.00 5.14
245 246 6.373216 TGAAGGAAAACACTATTATTCACCCG 59.627 38.462 0.00 0.00 0.00 5.28
246 247 7.696992 TGAAGGAAAACACTATTATTCACCC 57.303 36.000 0.00 0.00 0.00 4.61
247 248 9.974980 TTTTGAAGGAAAACACTATTATTCACC 57.025 29.630 0.00 0.00 0.00 4.02
409 415 3.120060 CCCAAGCAAACAGATTCGAGAAG 60.120 47.826 0.00 0.00 0.00 2.85
416 422 2.603075 TAGGCCCAAGCAAACAGATT 57.397 45.000 0.00 0.00 42.56 2.40
768 836 1.475751 CGGTGGATTATGCCTGCTTCT 60.476 52.381 0.00 0.00 0.00 2.85
1073 1145 2.803979 CGATGACGTCGGTGAAACA 58.196 52.632 11.62 0.00 46.47 2.83
1117 1189 1.147153 GGGCAGGAAATCGGAGAGG 59.853 63.158 0.00 0.00 43.63 3.69
1122 1194 1.304052 TGTTGGGGCAGGAAATCGG 60.304 57.895 0.00 0.00 0.00 4.18
1138 1210 0.035630 GCAGGAAGATGCTCTGGTGT 60.036 55.000 0.00 0.00 43.07 4.16
1207 1279 2.668250 CACACGACGTAATGGAAGTCA 58.332 47.619 0.00 0.00 36.44 3.41
1285 1357 3.807538 GCCAGACGTGCCATGCAG 61.808 66.667 0.00 0.00 40.08 4.41
1302 1374 2.190841 AACACGGCGGGGTCAAAAG 61.191 57.895 16.11 0.00 0.00 2.27
1312 1384 1.787847 GAAGTGATCCAACACGGCG 59.212 57.895 4.80 4.80 44.35 6.46
1339 1411 0.101399 CATGACCCTCGGAGAACTCG 59.899 60.000 6.58 0.00 34.09 4.18
1353 1425 0.101219 GGCCTGGCGAATTTCATGAC 59.899 55.000 13.40 0.00 0.00 3.06
1357 1429 2.749839 CCGGCCTGGCGAATTTCA 60.750 61.111 15.13 0.00 0.00 2.69
1360 1432 2.120909 CATTCCGGCCTGGCGAATT 61.121 57.895 16.17 3.39 37.80 2.17
1402 1474 4.105377 CCATTCTCCTTATGAACCCATCCT 59.895 45.833 0.00 0.00 34.31 3.24
1414 1486 6.295859 CCGTATCAATCCATCCATTCTCCTTA 60.296 42.308 0.00 0.00 0.00 2.69
1423 1495 4.592778 TCATCTTCCGTATCAATCCATCCA 59.407 41.667 0.00 0.00 0.00 3.41
1480 1552 3.071479 GCCGTTAAGAAACACATCTCCA 58.929 45.455 0.00 0.00 35.16 3.86
1514 1586 0.110486 ATACCCGGATCCATGGCAAC 59.890 55.000 13.41 0.21 0.00 4.17
1516 1588 1.275666 CTATACCCGGATCCATGGCA 58.724 55.000 13.41 2.37 0.00 4.92
1517 1589 1.276622 ACTATACCCGGATCCATGGC 58.723 55.000 13.41 0.00 0.00 4.40
1526 1598 1.177256 ACCGCAGCTACTATACCCGG 61.177 60.000 0.00 0.00 40.01 5.73
1527 1599 0.039437 CACCGCAGCTACTATACCCG 60.039 60.000 0.00 0.00 0.00 5.28
1528 1600 0.317479 CCACCGCAGCTACTATACCC 59.683 60.000 0.00 0.00 0.00 3.69
1530 1602 1.679680 TGTCCACCGCAGCTACTATAC 59.320 52.381 0.00 0.00 0.00 1.47
1533 1605 0.611062 AGTGTCCACCGCAGCTACTA 60.611 55.000 0.00 0.00 0.00 1.82
1534 1606 1.908793 AGTGTCCACCGCAGCTACT 60.909 57.895 0.00 0.00 0.00 2.57
1535 1607 1.738099 CAGTGTCCACCGCAGCTAC 60.738 63.158 0.00 0.00 0.00 3.58
1540 1612 3.625897 CCCTCAGTGTCCACCGCA 61.626 66.667 0.00 0.00 0.00 5.69
1542 1614 1.764571 TTTCCCCTCAGTGTCCACCG 61.765 60.000 0.00 0.00 0.00 4.94
1552 1624 1.753903 TCCTCCATGTTTTCCCCTCA 58.246 50.000 0.00 0.00 0.00 3.86
1573 1645 1.679944 CCAACAGCAGGGACAGGTATG 60.680 57.143 0.00 0.00 0.00 2.39
1587 1659 4.686191 ATGAGAGGAATAGAGCCAACAG 57.314 45.455 0.00 0.00 0.00 3.16
1588 1660 4.471025 TGAATGAGAGGAATAGAGCCAACA 59.529 41.667 0.00 0.00 0.00 3.33
1589 1661 5.028549 TGAATGAGAGGAATAGAGCCAAC 57.971 43.478 0.00 0.00 0.00 3.77
1595 1667 7.122048 TGAGACTTCTGAATGAGAGGAATAGA 58.878 38.462 0.00 0.00 32.06 1.98
1598 1670 5.129155 CCTGAGACTTCTGAATGAGAGGAAT 59.871 44.000 0.00 0.00 32.06 3.01
1601 1673 3.132646 CCCTGAGACTTCTGAATGAGAGG 59.867 52.174 0.00 0.00 33.90 3.69
1602 1674 3.768757 ACCCTGAGACTTCTGAATGAGAG 59.231 47.826 0.00 0.00 30.18 3.20
1636 1708 4.444056 CCATCTGTTTTAACAAAAGTGGCG 59.556 41.667 0.00 0.00 38.66 5.69
1638 1710 7.598493 CCATACCATCTGTTTTAACAAAAGTGG 59.402 37.037 10.86 10.86 38.66 4.00
1641 1713 9.191995 GAACCATACCATCTGTTTTAACAAAAG 57.808 33.333 0.00 0.00 38.66 2.27
1654 1726 4.783227 ACTACCAACAGAACCATACCATCT 59.217 41.667 0.00 0.00 0.00 2.90
1668 1743 7.455641 TTCTCAAGAACAAAAACTACCAACA 57.544 32.000 0.00 0.00 0.00 3.33
1700 1775 6.645790 ATGCTTCAATATCCATTCTTGACC 57.354 37.500 0.00 0.00 0.00 4.02
1732 1807 7.679881 TCTCCCTCTCCAAATATATATGAAGCA 59.320 37.037 0.00 0.00 0.00 3.91
1754 1829 5.483583 AGCCCAGTATAAGATCAATCTCTCC 59.516 44.000 0.00 0.00 35.76 3.71
1773 1848 1.832167 GCAACCCACTGAAAGCCCA 60.832 57.895 0.00 0.00 37.60 5.36
1811 1886 3.686726 CAGCCCACAGTTAAGAAGATCAC 59.313 47.826 0.00 0.00 0.00 3.06
1831 1906 8.597167 TCATAAGAGACCAATGTATTATCCCAG 58.403 37.037 0.00 0.00 0.00 4.45
1908 1983 0.179073 ATATGGCAGATATCGCGGGC 60.179 55.000 6.13 1.05 0.00 6.13
1961 2036 6.370442 CACCAACCTCGATTTTTATGTCACTA 59.630 38.462 0.00 0.00 0.00 2.74
1962 2037 5.181245 CACCAACCTCGATTTTTATGTCACT 59.819 40.000 0.00 0.00 0.00 3.41
1976 2051 3.753294 ATCTAATAGGCACCAACCTCG 57.247 47.619 0.00 0.00 41.50 4.63
2117 2302 8.289618 CAGTAATAATGGACCCGATATTGTTTG 58.710 37.037 0.00 0.00 0.00 2.93
2147 2332 6.586344 TGATGTTTTGGCAACTAAATTCCAA 58.414 32.000 0.00 0.00 43.02 3.53
2158 2343 3.902881 ACCAAGTTGATGTTTTGGCAA 57.097 38.095 3.87 0.00 44.06 4.52
2246 2435 7.807977 TTGCATCCTTCCAAATAACTATCTC 57.192 36.000 0.00 0.00 0.00 2.75
2247 2436 8.773033 ATTTGCATCCTTCCAAATAACTATCT 57.227 30.769 0.00 0.00 39.23 1.98
2255 2444 4.970640 ACCCATATTTGCATCCTTCCAAAT 59.029 37.500 0.00 0.00 42.46 2.32
2310 2499 8.966194 GTACTACTTACTTGACAAGACAAGAAC 58.034 37.037 26.60 18.54 46.85 3.01
2336 2525 3.059352 AGAATTTTGTGACGGAGGGAG 57.941 47.619 0.00 0.00 0.00 4.30
2337 2526 3.146066 CAAGAATTTTGTGACGGAGGGA 58.854 45.455 0.00 0.00 0.00 4.20
2338 2527 2.884639 ACAAGAATTTTGTGACGGAGGG 59.115 45.455 5.55 0.00 0.00 4.30
2339 2528 3.815401 AGACAAGAATTTTGTGACGGAGG 59.185 43.478 9.70 0.00 31.96 4.30
2340 2529 5.424121 AAGACAAGAATTTTGTGACGGAG 57.576 39.130 9.70 0.00 31.96 4.63
2341 2530 6.285224 TCTAAGACAAGAATTTTGTGACGGA 58.715 36.000 9.70 3.18 31.96 4.69
2342 2531 6.539649 TCTAAGACAAGAATTTTGTGACGG 57.460 37.500 9.70 1.54 31.96 4.79
2343 2532 8.895845 CAAATCTAAGACAAGAATTTTGTGACG 58.104 33.333 9.70 0.00 31.96 4.35
2344 2533 9.736023 ACAAATCTAAGACAAGAATTTTGTGAC 57.264 29.630 9.70 0.03 37.33 3.67
2345 2534 9.950680 GACAAATCTAAGACAAGAATTTTGTGA 57.049 29.630 9.23 3.61 38.16 3.58
2346 2535 9.956720 AGACAAATCTAAGACAAGAATTTTGTG 57.043 29.630 9.23 0.00 38.16 3.33
2389 2578 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
2390 2579 8.255206 TGGATGTATCAAGTCACGTTTTAGTAT 58.745 33.333 0.00 0.00 0.00 2.12
2391 2580 7.604549 TGGATGTATCAAGTCACGTTTTAGTA 58.395 34.615 0.00 0.00 0.00 1.82
2392 2581 6.460781 TGGATGTATCAAGTCACGTTTTAGT 58.539 36.000 0.00 0.00 0.00 2.24
2393 2582 6.961359 TGGATGTATCAAGTCACGTTTTAG 57.039 37.500 0.00 0.00 0.00 1.85
2394 2583 9.256477 GATATGGATGTATCAAGTCACGTTTTA 57.744 33.333 0.00 0.00 32.52 1.52
2395 2584 7.987458 AGATATGGATGTATCAAGTCACGTTTT 59.013 33.333 0.00 0.00 34.27 2.43
2396 2585 7.500992 AGATATGGATGTATCAAGTCACGTTT 58.499 34.615 0.00 0.00 34.27 3.60
2397 2586 7.055667 AGATATGGATGTATCAAGTCACGTT 57.944 36.000 0.00 0.00 34.27 3.99
2398 2587 6.656632 AGATATGGATGTATCAAGTCACGT 57.343 37.500 0.00 0.00 34.27 4.49
2399 2588 7.965655 GTCTAGATATGGATGTATCAAGTCACG 59.034 40.741 0.00 0.00 34.27 4.35
2400 2589 8.797438 TGTCTAGATATGGATGTATCAAGTCAC 58.203 37.037 0.00 0.00 34.27 3.67
2401 2590 8.940397 TGTCTAGATATGGATGTATCAAGTCA 57.060 34.615 0.00 0.00 34.27 3.41
2422 2611 9.546428 CCCAAAATTCTTGTCTTAAATTTGTCT 57.454 29.630 0.00 0.00 33.95 3.41
2423 2612 9.541143 TCCCAAAATTCTTGTCTTAAATTTGTC 57.459 29.630 0.00 0.00 33.95 3.18
2424 2613 9.325198 GTCCCAAAATTCTTGTCTTAAATTTGT 57.675 29.630 0.00 0.00 33.95 2.83
2425 2614 8.487176 CGTCCCAAAATTCTTGTCTTAAATTTG 58.513 33.333 0.00 0.00 33.95 2.32
2426 2615 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
2427 2616 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
2428 2617 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
2429 2618 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
2430 2619 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
2431 2620 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2432 2621 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2433 2622 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2434 2623 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2435 2624 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2436 2625 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2437 2626 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2438 2627 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2439 2628 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2440 2629 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2441 2630 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2442 2631 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2443 2632 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2444 2633 2.605257 CATATACTCCCTCCGTCCCAA 58.395 52.381 0.00 0.00 0.00 4.12
2445 2634 1.826042 GCATATACTCCCTCCGTCCCA 60.826 57.143 0.00 0.00 0.00 4.37
2446 2635 0.896226 GCATATACTCCCTCCGTCCC 59.104 60.000 0.00 0.00 0.00 4.46
2447 2636 1.926108 AGCATATACTCCCTCCGTCC 58.074 55.000 0.00 0.00 0.00 4.79
2448 2637 3.440872 CACTAGCATATACTCCCTCCGTC 59.559 52.174 0.00 0.00 0.00 4.79
2449 2638 3.181431 ACACTAGCATATACTCCCTCCGT 60.181 47.826 0.00 0.00 0.00 4.69
2450 2639 3.422796 ACACTAGCATATACTCCCTCCG 58.577 50.000 0.00 0.00 0.00 4.63
2451 2640 6.127310 CCAATACACTAGCATATACTCCCTCC 60.127 46.154 0.00 0.00 0.00 4.30
2452 2641 6.628398 GCCAATACACTAGCATATACTCCCTC 60.628 46.154 0.00 0.00 0.00 4.30
2453 2642 5.187967 GCCAATACACTAGCATATACTCCCT 59.812 44.000 0.00 0.00 0.00 4.20
2454 2643 5.187967 AGCCAATACACTAGCATATACTCCC 59.812 44.000 0.00 0.00 0.00 4.30
2455 2644 6.287589 AGCCAATACACTAGCATATACTCC 57.712 41.667 0.00 0.00 0.00 3.85
2456 2645 8.524487 AGTAAGCCAATACACTAGCATATACTC 58.476 37.037 0.00 0.00 0.00 2.59
2457 2646 8.423906 AGTAAGCCAATACACTAGCATATACT 57.576 34.615 0.00 0.00 0.00 2.12
2499 2688 8.969260 AGATACATGCAAGAGATAATTCACAA 57.031 30.769 0.00 0.00 0.00 3.33
2508 2697 4.141551 TGAGCCAAGATACATGCAAGAGAT 60.142 41.667 0.00 0.00 0.00 2.75
2534 2723 9.650714 ACTAACAGTGGTATTATATGGAGTACA 57.349 33.333 0.00 0.00 0.00 2.90
2562 2751 2.976882 AGCTACCTACCCTCAACAACAA 59.023 45.455 0.00 0.00 0.00 2.83
2581 2770 6.749118 CAGCATAAGTATTTTGTTTCCTCAGC 59.251 38.462 0.00 0.00 29.32 4.26
2601 2790 6.815089 TGAAATGTAAACCAAAGAACAGCAT 58.185 32.000 0.00 0.00 0.00 3.79
2603 2792 7.713764 AATGAAATGTAAACCAAAGAACAGC 57.286 32.000 0.00 0.00 0.00 4.40
2618 2814 3.829601 TGCGGGAAAGGTAAATGAAATGT 59.170 39.130 0.00 0.00 0.00 2.71
2637 2833 5.918011 TGCTCTAAAACAGGTTAAAAATGCG 59.082 36.000 0.00 0.00 0.00 4.73
2683 2880 0.707616 TCGGGGTGGAATTGGGATTT 59.292 50.000 0.00 0.00 0.00 2.17
2737 2934 7.094377 TGGCTCCTAATGAATAAAACAACAGAC 60.094 37.037 0.00 0.00 0.00 3.51
2740 2937 6.152661 CCTGGCTCCTAATGAATAAAACAACA 59.847 38.462 0.00 0.00 0.00 3.33
2742 2939 6.252995 ACCTGGCTCCTAATGAATAAAACAA 58.747 36.000 0.00 0.00 0.00 2.83
2744 2941 6.122964 AGACCTGGCTCCTAATGAATAAAAC 58.877 40.000 0.00 0.00 0.00 2.43
2809 3007 6.550108 TCTTAGGTATCATCCAGTCCTTGTAC 59.450 42.308 0.00 0.00 0.00 2.90
2811 3009 5.364157 GTCTTAGGTATCATCCAGTCCTTGT 59.636 44.000 0.00 0.00 0.00 3.16
2834 3032 1.339097 ACTGTAGCCAACTCTTCCGT 58.661 50.000 0.00 0.00 0.00 4.69
2836 3034 2.093606 GGGTACTGTAGCCAACTCTTCC 60.094 54.545 26.59 3.59 45.50 3.46
2875 3073 4.572389 CCATAACCTTACTGATGCTGTCAC 59.428 45.833 0.00 0.00 32.22 3.67
2955 3153 9.905713 ATTTATCTGCCAACAAGAGATTAACTA 57.094 29.630 0.00 0.00 0.00 2.24
2999 3197 7.370383 ACAAAAGAAAGAAACATGCATACGAT 58.630 30.769 0.00 0.00 0.00 3.73
3030 3228 6.580041 CAGATTCGGTGAAGTGAAGAAAATTG 59.420 38.462 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.