Multiple sequence alignment - TraesCS1D01G376700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G376700 chr1D 100.000 2801 0 0 1 2801 453198621 453201421 0.000000e+00 5173.0
1 TraesCS1D01G376700 chr1D 88.769 1300 68 42 481 1740 453181173 453182434 0.000000e+00 1520.0
2 TraesCS1D01G376700 chr1D 87.468 774 76 16 965 1731 453134627 453135386 0.000000e+00 872.0
3 TraesCS1D01G376700 chr1D 85.823 656 57 19 1001 1626 453211139 453210490 0.000000e+00 664.0
4 TraesCS1D01G376700 chr1D 96.000 50 2 0 820 869 453134454 453134503 6.430000e-12 82.4
5 TraesCS1D01G376700 chr1A 88.235 1853 109 41 460 2248 547886183 547887990 0.000000e+00 2113.0
6 TraesCS1D01G376700 chr1A 87.840 699 56 20 1031 1722 547863941 547864617 0.000000e+00 793.0
7 TraesCS1D01G376700 chr1A 85.337 682 55 26 982 1626 547908477 547907804 0.000000e+00 664.0
8 TraesCS1D01G376700 chr1A 89.206 315 32 1 2229 2543 547888052 547888364 2.620000e-105 392.0
9 TraesCS1D01G376700 chr1A 84.404 218 20 5 2584 2801 547892010 547892213 4.730000e-48 202.0
10 TraesCS1D01G376700 chr1A 82.716 162 19 4 1846 1998 547864790 547864951 4.870000e-28 135.0
11 TraesCS1D01G376700 chr1B 88.675 1298 80 31 458 1740 623672048 623673293 0.000000e+00 1520.0
12 TraesCS1D01G376700 chr1B 86.275 1479 90 54 400 1830 623679012 623680425 0.000000e+00 1502.0
13 TraesCS1D01G376700 chr1B 86.364 660 54 18 997 1626 623689449 623688796 0.000000e+00 688.0
14 TraesCS1D01G376700 chr1B 89.170 554 46 5 1934 2484 623680612 623681154 0.000000e+00 678.0
15 TraesCS1D01G376700 chr1B 95.652 207 9 0 2589 2795 623681312 623681518 1.610000e-87 333.0
16 TraesCS1D01G376700 chr1B 96.396 111 4 0 1838 1948 623680477 623680587 1.710000e-42 183.0
17 TraesCS1D01G376700 chr1B 87.778 90 6 1 781 870 623666183 623666267 1.780000e-17 100.0
18 TraesCS1D01G376700 chr1B 83.750 80 3 3 1861 1940 623673417 623673486 1.800000e-07 67.6
19 TraesCS1D01G376700 chr1B 100.000 29 0 0 711 739 623689790 623689762 1.000000e-03 54.7
20 TraesCS1D01G376700 chr4B 85.131 343 37 11 7 337 52407614 52407274 3.460000e-89 339.0
21 TraesCS1D01G376700 chr7D 84.548 343 39 12 7 337 6791816 6792156 7.480000e-86 327.0
22 TraesCS1D01G376700 chr2B 84.615 338 41 7 11 337 162860497 162860834 2.690000e-85 326.0
23 TraesCS1D01G376700 chr6D 84.195 348 40 12 7 341 389920808 389921153 9.680000e-85 324.0
24 TraesCS1D01G376700 chr6D 84.226 336 41 7 7 338 42407713 42407386 1.620000e-82 316.0
25 TraesCS1D01G376700 chr6D 83.965 343 41 10 7 337 263037785 263037445 1.620000e-82 316.0
26 TraesCS1D01G376700 chr5D 84.366 339 43 6 7 336 539226301 539225964 9.680000e-85 324.0
27 TraesCS1D01G376700 chr3D 84.164 341 42 10 7 337 562173796 562174134 1.250000e-83 320.0
28 TraesCS1D01G376700 chr6A 83.626 342 48 8 1 337 51411913 51411575 5.820000e-82 315.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G376700 chr1D 453198621 453201421 2800 False 5173.000000 5173 100.000000 1 2801 1 chr1D.!!$F2 2800
1 TraesCS1D01G376700 chr1D 453181173 453182434 1261 False 1520.000000 1520 88.769000 481 1740 1 chr1D.!!$F1 1259
2 TraesCS1D01G376700 chr1D 453210490 453211139 649 True 664.000000 664 85.823000 1001 1626 1 chr1D.!!$R1 625
3 TraesCS1D01G376700 chr1D 453134454 453135386 932 False 477.200000 872 91.734000 820 1731 2 chr1D.!!$F3 911
4 TraesCS1D01G376700 chr1A 547886183 547892213 6030 False 902.333333 2113 87.281667 460 2801 3 chr1A.!!$F2 2341
5 TraesCS1D01G376700 chr1A 547907804 547908477 673 True 664.000000 664 85.337000 982 1626 1 chr1A.!!$R1 644
6 TraesCS1D01G376700 chr1A 547863941 547864951 1010 False 464.000000 793 85.278000 1031 1998 2 chr1A.!!$F1 967
7 TraesCS1D01G376700 chr1B 623672048 623673486 1438 False 793.800000 1520 86.212500 458 1940 2 chr1B.!!$F2 1482
8 TraesCS1D01G376700 chr1B 623679012 623681518 2506 False 674.000000 1502 91.873250 400 2795 4 chr1B.!!$F3 2395
9 TraesCS1D01G376700 chr1B 623688796 623689790 994 True 371.350000 688 93.182000 711 1626 2 chr1B.!!$R1 915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.111253 ACCAAGTTCTGCCCTTGAGG 59.889 55.0 1.89 0.0 41.44 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 2593 0.109272 TGCGAGTGACTCCGATTGTC 60.109 55.0 7.07 0.0 35.21 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.526506 GATTTGCTTATGGAGGATTTGCT 57.473 39.130 0.00 0.00 0.00 3.91
23 24 4.989279 TTTGCTTATGGAGGATTTGCTC 57.011 40.909 0.00 0.00 0.00 4.26
24 25 2.564771 TGCTTATGGAGGATTTGCTCG 58.435 47.619 0.00 0.00 0.00 5.03
25 26 1.876156 GCTTATGGAGGATTTGCTCGG 59.124 52.381 0.00 0.00 0.00 4.63
26 27 2.485479 GCTTATGGAGGATTTGCTCGGA 60.485 50.000 0.00 0.00 0.00 4.55
27 28 3.808618 GCTTATGGAGGATTTGCTCGGAT 60.809 47.826 0.00 0.00 0.00 4.18
28 29 2.557920 ATGGAGGATTTGCTCGGATC 57.442 50.000 0.00 0.00 0.00 3.36
29 30 1.500474 TGGAGGATTTGCTCGGATCT 58.500 50.000 0.00 0.00 0.00 2.75
30 31 1.139654 TGGAGGATTTGCTCGGATCTG 59.860 52.381 0.00 0.00 0.00 2.90
31 32 1.139853 GGAGGATTTGCTCGGATCTGT 59.860 52.381 0.42 0.00 0.00 3.41
32 33 2.420687 GGAGGATTTGCTCGGATCTGTT 60.421 50.000 0.42 0.00 0.00 3.16
33 34 2.869192 GAGGATTTGCTCGGATCTGTTC 59.131 50.000 0.42 0.00 0.00 3.18
34 35 1.594862 GGATTTGCTCGGATCTGTTCG 59.405 52.381 0.42 0.00 0.00 3.95
35 36 2.271800 GATTTGCTCGGATCTGTTCGT 58.728 47.619 0.42 0.00 0.00 3.85
36 37 1.710013 TTTGCTCGGATCTGTTCGTC 58.290 50.000 0.42 0.00 0.00 4.20
37 38 0.456142 TTGCTCGGATCTGTTCGTCG 60.456 55.000 0.42 0.00 0.00 5.12
38 39 1.136984 GCTCGGATCTGTTCGTCGT 59.863 57.895 0.42 0.00 0.00 4.34
39 40 0.456312 GCTCGGATCTGTTCGTCGTT 60.456 55.000 0.42 0.00 0.00 3.85
40 41 1.536149 CTCGGATCTGTTCGTCGTTC 58.464 55.000 0.42 0.00 0.00 3.95
41 42 0.179207 TCGGATCTGTTCGTCGTTCG 60.179 55.000 0.42 0.00 41.41 3.95
42 43 0.453950 CGGATCTGTTCGTCGTTCGT 60.454 55.000 0.00 0.00 40.80 3.85
43 44 1.257539 GGATCTGTTCGTCGTTCGTC 58.742 55.000 0.00 0.00 40.80 4.20
44 45 1.135746 GGATCTGTTCGTCGTTCGTCT 60.136 52.381 0.00 0.00 40.80 4.18
45 46 2.094894 GGATCTGTTCGTCGTTCGTCTA 59.905 50.000 0.00 0.00 40.80 2.59
46 47 2.584166 TCTGTTCGTCGTTCGTCTAC 57.416 50.000 0.00 0.00 40.80 2.59
47 48 2.138320 TCTGTTCGTCGTTCGTCTACT 58.862 47.619 0.00 0.00 40.80 2.57
48 49 2.545526 TCTGTTCGTCGTTCGTCTACTT 59.454 45.455 0.00 0.00 40.80 2.24
49 50 3.002656 TCTGTTCGTCGTTCGTCTACTTT 59.997 43.478 0.00 0.00 40.80 2.66
50 51 3.694734 TGTTCGTCGTTCGTCTACTTTT 58.305 40.909 0.00 0.00 40.80 2.27
51 52 4.104776 TGTTCGTCGTTCGTCTACTTTTT 58.895 39.130 0.00 0.00 40.80 1.94
52 53 4.027458 TGTTCGTCGTTCGTCTACTTTTTG 60.027 41.667 0.00 0.00 40.80 2.44
53 54 3.694734 TCGTCGTTCGTCTACTTTTTGT 58.305 40.909 0.00 0.00 40.80 2.83
54 55 3.483196 TCGTCGTTCGTCTACTTTTTGTG 59.517 43.478 0.00 0.00 40.80 3.33
55 56 3.241322 CGTCGTTCGTCTACTTTTTGTGT 59.759 43.478 0.00 0.00 34.52 3.72
56 57 4.602524 CGTCGTTCGTCTACTTTTTGTGTC 60.603 45.833 0.00 0.00 34.52 3.67
57 58 4.501921 GTCGTTCGTCTACTTTTTGTGTCT 59.498 41.667 0.00 0.00 0.00 3.41
58 59 5.005107 GTCGTTCGTCTACTTTTTGTGTCTT 59.995 40.000 0.00 0.00 0.00 3.01
59 60 5.230726 TCGTTCGTCTACTTTTTGTGTCTTC 59.769 40.000 0.00 0.00 0.00 2.87
60 61 5.005012 CGTTCGTCTACTTTTTGTGTCTTCA 59.995 40.000 0.00 0.00 0.00 3.02
61 62 6.454583 CGTTCGTCTACTTTTTGTGTCTTCAA 60.455 38.462 0.00 0.00 0.00 2.69
62 63 6.583912 TCGTCTACTTTTTGTGTCTTCAAG 57.416 37.500 0.00 0.00 0.00 3.02
63 64 6.103997 TCGTCTACTTTTTGTGTCTTCAAGT 58.896 36.000 0.00 0.00 0.00 3.16
64 65 6.592607 TCGTCTACTTTTTGTGTCTTCAAGTT 59.407 34.615 0.00 0.00 0.00 2.66
65 66 6.682863 CGTCTACTTTTTGTGTCTTCAAGTTG 59.317 38.462 0.00 0.00 0.00 3.16
66 67 6.967199 GTCTACTTTTTGTGTCTTCAAGTTGG 59.033 38.462 2.34 0.00 0.00 3.77
67 68 5.975693 ACTTTTTGTGTCTTCAAGTTGGA 57.024 34.783 2.34 0.00 0.00 3.53
68 69 6.530019 ACTTTTTGTGTCTTCAAGTTGGAT 57.470 33.333 2.34 0.00 0.00 3.41
69 70 6.564328 ACTTTTTGTGTCTTCAAGTTGGATC 58.436 36.000 2.34 0.00 0.00 3.36
70 71 5.514274 TTTTGTGTCTTCAAGTTGGATCC 57.486 39.130 4.20 4.20 0.00 3.36
71 72 4.437682 TTGTGTCTTCAAGTTGGATCCT 57.562 40.909 14.23 0.00 0.00 3.24
72 73 4.437682 TGTGTCTTCAAGTTGGATCCTT 57.562 40.909 14.23 0.00 0.00 3.36
73 74 4.389374 TGTGTCTTCAAGTTGGATCCTTC 58.611 43.478 14.23 5.98 0.00 3.46
74 75 3.753797 GTGTCTTCAAGTTGGATCCTTCC 59.246 47.826 14.23 0.32 42.94 3.46
86 87 3.610911 GGATCCTTCCAATCAACGTTCT 58.389 45.455 3.84 0.00 42.12 3.01
87 88 4.010349 GGATCCTTCCAATCAACGTTCTT 58.990 43.478 3.84 0.00 42.12 2.52
88 89 4.459337 GGATCCTTCCAATCAACGTTCTTT 59.541 41.667 3.84 0.00 42.12 2.52
89 90 5.392057 GGATCCTTCCAATCAACGTTCTTTC 60.392 44.000 3.84 0.00 42.12 2.62
90 91 4.456535 TCCTTCCAATCAACGTTCTTTCA 58.543 39.130 0.00 0.00 0.00 2.69
91 92 5.070001 TCCTTCCAATCAACGTTCTTTCAT 58.930 37.500 0.00 0.00 0.00 2.57
92 93 5.181245 TCCTTCCAATCAACGTTCTTTCATC 59.819 40.000 0.00 0.00 0.00 2.92
93 94 4.661993 TCCAATCAACGTTCTTTCATCG 57.338 40.909 0.00 0.00 0.00 3.84
94 95 4.311606 TCCAATCAACGTTCTTTCATCGA 58.688 39.130 0.00 0.00 0.00 3.59
95 96 4.151689 TCCAATCAACGTTCTTTCATCGAC 59.848 41.667 0.00 0.00 0.00 4.20
96 97 3.972706 ATCAACGTTCTTTCATCGACG 57.027 42.857 0.00 0.00 41.00 5.12
97 98 2.055838 TCAACGTTCTTTCATCGACGG 58.944 47.619 0.00 0.00 39.63 4.79
98 99 0.788391 AACGTTCTTTCATCGACGGC 59.212 50.000 0.00 0.00 39.63 5.68
99 100 1.340465 CGTTCTTTCATCGACGGCG 59.660 57.895 2.87 2.87 39.35 6.46
100 101 1.708027 GTTCTTTCATCGACGGCGG 59.292 57.895 12.58 0.00 38.28 6.13
101 102 1.012486 GTTCTTTCATCGACGGCGGT 61.012 55.000 12.58 0.00 38.28 5.68
102 103 0.320073 TTCTTTCATCGACGGCGGTT 60.320 50.000 12.58 0.00 38.28 4.44
103 104 1.011968 TCTTTCATCGACGGCGGTTG 61.012 55.000 12.58 9.82 38.28 3.77
104 105 2.563086 CTTTCATCGACGGCGGTTGC 62.563 60.000 12.58 0.00 41.71 4.17
105 106 3.583276 TTCATCGACGGCGGTTGCT 62.583 57.895 12.58 0.00 42.25 3.91
112 113 3.474806 CGGCGGTTGCTGTTCTAG 58.525 61.111 0.00 0.00 42.79 2.43
113 114 1.374252 CGGCGGTTGCTGTTCTAGT 60.374 57.895 0.00 0.00 42.79 2.57
114 115 1.626654 CGGCGGTTGCTGTTCTAGTG 61.627 60.000 0.00 0.00 42.79 2.74
115 116 1.497722 GCGGTTGCTGTTCTAGTGC 59.502 57.895 0.00 0.00 38.39 4.40
116 117 1.781555 CGGTTGCTGTTCTAGTGCG 59.218 57.895 0.00 0.00 0.00 5.34
117 118 1.497722 GGTTGCTGTTCTAGTGCGC 59.502 57.895 0.00 0.00 0.00 6.09
118 119 0.951040 GGTTGCTGTTCTAGTGCGCT 60.951 55.000 9.73 4.58 0.00 5.92
119 120 0.164647 GTTGCTGTTCTAGTGCGCTG 59.835 55.000 10.80 0.00 0.00 5.18
120 121 0.950555 TTGCTGTTCTAGTGCGCTGG 60.951 55.000 10.80 7.28 0.00 4.85
121 122 1.374758 GCTGTTCTAGTGCGCTGGT 60.375 57.895 10.80 0.00 0.00 4.00
122 123 1.355066 GCTGTTCTAGTGCGCTGGTC 61.355 60.000 10.80 5.89 0.00 4.02
123 124 0.244994 CTGTTCTAGTGCGCTGGTCT 59.755 55.000 10.80 4.60 0.00 3.85
124 125 0.679505 TGTTCTAGTGCGCTGGTCTT 59.320 50.000 10.80 0.00 0.00 3.01
125 126 1.890489 TGTTCTAGTGCGCTGGTCTTA 59.110 47.619 10.80 0.00 0.00 2.10
126 127 2.496070 TGTTCTAGTGCGCTGGTCTTAT 59.504 45.455 10.80 0.00 0.00 1.73
127 128 2.860735 GTTCTAGTGCGCTGGTCTTATG 59.139 50.000 10.80 0.00 0.00 1.90
128 129 1.409064 TCTAGTGCGCTGGTCTTATGG 59.591 52.381 10.80 0.00 0.00 2.74
129 130 0.464036 TAGTGCGCTGGTCTTATGGG 59.536 55.000 10.80 0.00 0.00 4.00
130 131 2.124736 TGCGCTGGTCTTATGGGC 60.125 61.111 9.73 0.00 39.58 5.36
131 132 2.902343 GCGCTGGTCTTATGGGCC 60.902 66.667 0.00 0.00 34.28 5.80
132 133 2.911143 CGCTGGTCTTATGGGCCT 59.089 61.111 4.53 0.00 0.00 5.19
133 134 1.224592 CGCTGGTCTTATGGGCCTT 59.775 57.895 4.53 0.00 0.00 4.35
134 135 0.468226 CGCTGGTCTTATGGGCCTTA 59.532 55.000 4.53 0.00 0.00 2.69
135 136 1.541233 CGCTGGTCTTATGGGCCTTAG 60.541 57.143 4.53 0.00 0.00 2.18
136 137 1.202818 GCTGGTCTTATGGGCCTTAGG 60.203 57.143 4.53 3.32 0.00 2.69
137 138 2.408565 CTGGTCTTATGGGCCTTAGGA 58.591 52.381 0.69 6.08 0.00 2.94
138 139 2.104963 CTGGTCTTATGGGCCTTAGGAC 59.895 54.545 24.88 24.88 0.00 3.85
139 140 1.070289 GGTCTTATGGGCCTTAGGACG 59.930 57.143 25.43 7.73 0.00 4.79
140 141 2.037144 GTCTTATGGGCCTTAGGACGA 58.963 52.381 20.83 0.00 0.00 4.20
141 142 2.633481 GTCTTATGGGCCTTAGGACGAT 59.367 50.000 20.83 6.87 32.72 3.73
142 143 2.632996 TCTTATGGGCCTTAGGACGATG 59.367 50.000 12.08 0.00 30.07 3.84
143 144 2.391926 TATGGGCCTTAGGACGATGA 57.608 50.000 12.08 0.00 30.07 2.92
144 145 0.759346 ATGGGCCTTAGGACGATGAC 59.241 55.000 0.00 0.00 24.65 3.06
145 146 0.325296 TGGGCCTTAGGACGATGACT 60.325 55.000 0.69 0.00 0.00 3.41
146 147 0.831307 GGGCCTTAGGACGATGACTT 59.169 55.000 0.69 0.00 0.00 3.01
147 148 1.202545 GGGCCTTAGGACGATGACTTC 60.203 57.143 0.69 0.00 0.00 3.01
148 149 1.757699 GGCCTTAGGACGATGACTTCT 59.242 52.381 0.69 0.00 0.00 2.85
149 150 2.223852 GGCCTTAGGACGATGACTTCTC 60.224 54.545 0.69 0.00 0.00 2.87
150 151 2.541999 GCCTTAGGACGATGACTTCTCG 60.542 54.545 0.69 0.00 41.77 4.04
151 152 2.943690 CCTTAGGACGATGACTTCTCGA 59.056 50.000 0.00 0.00 39.38 4.04
152 153 3.242804 CCTTAGGACGATGACTTCTCGAC 60.243 52.174 0.00 0.00 39.38 4.20
153 154 2.116827 AGGACGATGACTTCTCGACT 57.883 50.000 0.00 0.00 39.38 4.18
154 155 1.740585 AGGACGATGACTTCTCGACTG 59.259 52.381 0.00 0.00 39.38 3.51
155 156 1.469308 GGACGATGACTTCTCGACTGT 59.531 52.381 0.00 0.00 39.38 3.55
156 157 2.476519 GGACGATGACTTCTCGACTGTC 60.477 54.545 0.00 0.00 39.38 3.51
157 158 2.417239 GACGATGACTTCTCGACTGTCT 59.583 50.000 6.21 0.00 39.38 3.41
158 159 3.597255 ACGATGACTTCTCGACTGTCTA 58.403 45.455 6.21 0.00 39.38 2.59
159 160 3.619483 ACGATGACTTCTCGACTGTCTAG 59.381 47.826 6.21 4.58 39.38 2.43
160 161 3.619483 CGATGACTTCTCGACTGTCTAGT 59.381 47.826 8.90 5.58 40.66 2.57
161 162 4.804665 CGATGACTTCTCGACTGTCTAGTA 59.195 45.833 8.90 0.00 37.25 1.82
162 163 5.276489 CGATGACTTCTCGACTGTCTAGTAC 60.276 48.000 8.90 0.00 37.25 2.73
163 164 4.891260 TGACTTCTCGACTGTCTAGTACA 58.109 43.478 8.90 3.84 37.25 2.90
164 165 4.689812 TGACTTCTCGACTGTCTAGTACAC 59.310 45.833 8.90 2.32 37.25 2.90
165 166 4.002316 ACTTCTCGACTGTCTAGTACACC 58.998 47.826 8.90 0.00 37.25 4.16
166 167 3.690475 TCTCGACTGTCTAGTACACCA 57.310 47.619 8.90 0.00 37.25 4.17
167 168 4.011966 TCTCGACTGTCTAGTACACCAA 57.988 45.455 8.90 0.00 37.25 3.67
168 169 4.001652 TCTCGACTGTCTAGTACACCAAG 58.998 47.826 8.90 0.00 37.25 3.61
169 170 3.748083 TCGACTGTCTAGTACACCAAGT 58.252 45.455 6.21 0.00 37.25 3.16
170 171 4.139786 TCGACTGTCTAGTACACCAAGTT 58.860 43.478 6.21 0.00 37.25 2.66
171 172 4.214971 TCGACTGTCTAGTACACCAAGTTC 59.785 45.833 6.21 0.00 37.25 3.01
172 173 4.215827 CGACTGTCTAGTACACCAAGTTCT 59.784 45.833 6.21 0.00 37.25 3.01
173 174 5.455056 ACTGTCTAGTACACCAAGTTCTG 57.545 43.478 0.00 0.00 34.74 3.02
174 175 4.238514 CTGTCTAGTACACCAAGTTCTGC 58.761 47.826 0.00 0.00 33.45 4.26
175 176 3.006537 TGTCTAGTACACCAAGTTCTGCC 59.993 47.826 0.00 0.00 31.43 4.85
176 177 2.565834 TCTAGTACACCAAGTTCTGCCC 59.434 50.000 0.00 0.00 0.00 5.36
177 178 1.435256 AGTACACCAAGTTCTGCCCT 58.565 50.000 0.00 0.00 0.00 5.19
178 179 1.774856 AGTACACCAAGTTCTGCCCTT 59.225 47.619 0.00 0.00 0.00 3.95
179 180 1.880027 GTACACCAAGTTCTGCCCTTG 59.120 52.381 0.00 0.00 39.19 3.61
180 181 0.550914 ACACCAAGTTCTGCCCTTGA 59.449 50.000 1.89 0.00 41.44 3.02
181 182 1.242076 CACCAAGTTCTGCCCTTGAG 58.758 55.000 1.89 0.00 41.44 3.02
182 183 0.111253 ACCAAGTTCTGCCCTTGAGG 59.889 55.000 1.89 0.00 41.44 3.86
192 193 3.431658 CCTTGAGGGAGGGGCAAT 58.568 61.111 0.00 0.00 37.23 3.56
193 194 1.076485 CCTTGAGGGAGGGGCAATG 60.076 63.158 0.00 0.00 37.23 2.82
194 195 1.574526 CCTTGAGGGAGGGGCAATGA 61.575 60.000 0.00 0.00 37.23 2.57
195 196 0.394899 CTTGAGGGAGGGGCAATGAC 60.395 60.000 0.00 0.00 0.00 3.06
196 197 2.190578 GAGGGAGGGGCAATGACG 59.809 66.667 0.00 0.00 0.00 4.35
197 198 3.406595 GAGGGAGGGGCAATGACGG 62.407 68.421 0.00 0.00 0.00 4.79
222 223 3.027419 GCCTTTGGCTCACTTCAGT 57.973 52.632 0.73 0.00 46.69 3.41
223 224 0.595095 GCCTTTGGCTCACTTCAGTG 59.405 55.000 0.02 0.02 46.69 3.66
224 225 0.595095 CCTTTGGCTCACTTCAGTGC 59.405 55.000 1.74 0.00 45.25 4.40
225 226 1.602311 CTTTGGCTCACTTCAGTGCT 58.398 50.000 1.74 0.00 45.25 4.40
226 227 1.952296 CTTTGGCTCACTTCAGTGCTT 59.048 47.619 1.74 0.00 45.25 3.91
227 228 1.311859 TTGGCTCACTTCAGTGCTTG 58.688 50.000 1.74 0.00 45.25 4.01
228 229 0.181114 TGGCTCACTTCAGTGCTTGT 59.819 50.000 1.74 0.00 45.25 3.16
229 230 1.416030 TGGCTCACTTCAGTGCTTGTA 59.584 47.619 1.74 0.00 45.25 2.41
230 231 2.072298 GGCTCACTTCAGTGCTTGTAG 58.928 52.381 1.74 0.00 45.25 2.74
231 232 2.548920 GGCTCACTTCAGTGCTTGTAGT 60.549 50.000 1.74 0.00 45.25 2.73
232 233 2.734079 GCTCACTTCAGTGCTTGTAGTC 59.266 50.000 1.74 0.00 45.25 2.59
233 234 2.983136 CTCACTTCAGTGCTTGTAGTCG 59.017 50.000 1.74 0.00 45.25 4.18
234 235 2.361119 TCACTTCAGTGCTTGTAGTCGT 59.639 45.455 1.74 0.00 45.25 4.34
235 236 2.726760 CACTTCAGTGCTTGTAGTCGTC 59.273 50.000 0.00 0.00 35.50 4.20
236 237 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
237 238 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
238 239 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
239 240 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
240 241 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
241 242 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
242 243 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
243 244 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
244 245 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
245 246 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
246 247 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
247 248 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
248 249 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
249 250 1.134159 AGTCGTCGCTAGGTGGTCTAT 60.134 52.381 0.00 0.00 0.00 1.98
250 251 1.002684 GTCGTCGCTAGGTGGTCTATG 60.003 57.143 0.00 0.00 0.00 2.23
251 252 1.134310 TCGTCGCTAGGTGGTCTATGA 60.134 52.381 0.00 0.00 0.00 2.15
252 253 1.674441 CGTCGCTAGGTGGTCTATGAA 59.326 52.381 0.00 0.00 0.00 2.57
253 254 2.293677 CGTCGCTAGGTGGTCTATGAAT 59.706 50.000 0.00 0.00 0.00 2.57
254 255 3.609644 CGTCGCTAGGTGGTCTATGAATC 60.610 52.174 0.00 0.00 0.00 2.52
255 256 3.570550 GTCGCTAGGTGGTCTATGAATCT 59.429 47.826 0.00 0.00 0.00 2.40
256 257 3.570125 TCGCTAGGTGGTCTATGAATCTG 59.430 47.826 0.00 0.00 0.00 2.90
257 258 3.305676 CGCTAGGTGGTCTATGAATCTGG 60.306 52.174 0.00 0.00 0.00 3.86
258 259 3.898123 GCTAGGTGGTCTATGAATCTGGA 59.102 47.826 0.00 0.00 0.00 3.86
259 260 4.530161 GCTAGGTGGTCTATGAATCTGGAT 59.470 45.833 0.00 0.00 0.00 3.41
260 261 4.970860 AGGTGGTCTATGAATCTGGATG 57.029 45.455 0.00 0.00 0.00 3.51
261 262 4.302067 AGGTGGTCTATGAATCTGGATGT 58.698 43.478 0.00 0.00 0.00 3.06
262 263 5.467738 AGGTGGTCTATGAATCTGGATGTA 58.532 41.667 0.00 0.00 0.00 2.29
263 264 6.087456 AGGTGGTCTATGAATCTGGATGTAT 58.913 40.000 0.00 0.00 0.00 2.29
264 265 6.560304 AGGTGGTCTATGAATCTGGATGTATT 59.440 38.462 0.00 0.00 0.00 1.89
265 266 7.072961 AGGTGGTCTATGAATCTGGATGTATTT 59.927 37.037 0.00 0.00 0.00 1.40
266 267 7.721399 GGTGGTCTATGAATCTGGATGTATTTT 59.279 37.037 0.00 0.00 0.00 1.82
267 268 9.125026 GTGGTCTATGAATCTGGATGTATTTTT 57.875 33.333 0.00 0.00 0.00 1.94
289 290 8.853469 TTTTTATTATTTTCGGTGTTCGTTGT 57.147 26.923 0.00 0.00 40.32 3.32
290 291 9.941664 TTTTTATTATTTTCGGTGTTCGTTGTA 57.058 25.926 0.00 0.00 40.32 2.41
291 292 8.931905 TTTATTATTTTCGGTGTTCGTTGTAC 57.068 30.769 0.00 0.00 40.32 2.90
292 293 6.790285 ATTATTTTCGGTGTTCGTTGTACT 57.210 33.333 0.00 0.00 40.32 2.73
293 294 7.887996 ATTATTTTCGGTGTTCGTTGTACTA 57.112 32.000 0.00 0.00 40.32 1.82
294 295 7.887996 TTATTTTCGGTGTTCGTTGTACTAT 57.112 32.000 0.00 0.00 40.32 2.12
295 296 5.827568 TTTTCGGTGTTCGTTGTACTATC 57.172 39.130 0.00 0.00 40.32 2.08
296 297 4.502171 TTCGGTGTTCGTTGTACTATCA 57.498 40.909 0.00 0.00 40.32 2.15
297 298 4.707030 TCGGTGTTCGTTGTACTATCAT 57.293 40.909 0.00 0.00 40.32 2.45
298 299 5.063180 TCGGTGTTCGTTGTACTATCATT 57.937 39.130 0.00 0.00 40.32 2.57
299 300 6.193514 TCGGTGTTCGTTGTACTATCATTA 57.806 37.500 0.00 0.00 40.32 1.90
300 301 6.798482 TCGGTGTTCGTTGTACTATCATTAT 58.202 36.000 0.00 0.00 40.32 1.28
301 302 7.259882 TCGGTGTTCGTTGTACTATCATTATT 58.740 34.615 0.00 0.00 40.32 1.40
302 303 7.221259 TCGGTGTTCGTTGTACTATCATTATTG 59.779 37.037 0.00 0.00 40.32 1.90
303 304 7.221259 CGGTGTTCGTTGTACTATCATTATTGA 59.779 37.037 0.00 0.00 36.00 2.57
304 305 8.875803 GGTGTTCGTTGTACTATCATTATTGAA 58.124 33.333 0.00 0.00 34.96 2.69
305 306 9.901724 GTGTTCGTTGTACTATCATTATTGAAG 57.098 33.333 0.00 0.00 34.96 3.02
306 307 9.863845 TGTTCGTTGTACTATCATTATTGAAGA 57.136 29.630 0.00 0.00 34.96 2.87
318 319 7.677454 TCATTATTGAAGATGAATGGATCGG 57.323 36.000 0.00 0.00 31.54 4.18
319 320 7.452562 TCATTATTGAAGATGAATGGATCGGA 58.547 34.615 0.00 0.00 31.54 4.55
320 321 8.105197 TCATTATTGAAGATGAATGGATCGGAT 58.895 33.333 0.00 0.00 31.54 4.18
321 322 7.677454 TTATTGAAGATGAATGGATCGGATG 57.323 36.000 0.00 0.00 0.00 3.51
322 323 4.694760 TGAAGATGAATGGATCGGATGT 57.305 40.909 0.00 0.00 0.00 3.06
323 324 5.039920 TGAAGATGAATGGATCGGATGTT 57.960 39.130 0.00 0.00 0.00 2.71
324 325 5.439721 TGAAGATGAATGGATCGGATGTTT 58.560 37.500 0.00 0.00 0.00 2.83
325 326 5.887598 TGAAGATGAATGGATCGGATGTTTT 59.112 36.000 0.00 0.00 0.00 2.43
326 327 6.038603 TGAAGATGAATGGATCGGATGTTTTC 59.961 38.462 0.00 0.00 0.00 2.29
327 328 4.823989 AGATGAATGGATCGGATGTTTTCC 59.176 41.667 0.00 0.00 41.59 3.13
328 329 3.287222 TGAATGGATCGGATGTTTTCCC 58.713 45.455 0.00 0.00 42.06 3.97
329 330 1.967319 ATGGATCGGATGTTTTCCCG 58.033 50.000 0.00 0.00 46.57 5.14
330 331 0.616371 TGGATCGGATGTTTTCCCGT 59.384 50.000 0.00 0.00 45.48 5.28
331 332 1.832366 TGGATCGGATGTTTTCCCGTA 59.168 47.619 0.00 0.00 45.48 4.02
332 333 2.236644 TGGATCGGATGTTTTCCCGTAA 59.763 45.455 0.00 0.00 45.48 3.18
333 334 3.272581 GGATCGGATGTTTTCCCGTAAA 58.727 45.455 0.00 0.00 45.48 2.01
334 335 3.690628 GGATCGGATGTTTTCCCGTAAAA 59.309 43.478 0.00 0.00 45.48 1.52
335 336 4.156373 GGATCGGATGTTTTCCCGTAAAAA 59.844 41.667 0.00 0.00 45.48 1.94
427 428 9.490663 CTTAATAAATAGCCTTTTGTCTTGTCG 57.509 33.333 0.00 0.00 0.00 4.35
431 432 6.385649 AATAGCCTTTTGTCTTGTCGAAAA 57.614 33.333 0.00 0.00 0.00 2.29
456 458 3.705604 AGGAAAACACAACAAGCAATCG 58.294 40.909 0.00 0.00 0.00 3.34
520 528 0.449388 GGCGAGCAAAACCATCTGAG 59.551 55.000 0.00 0.00 0.00 3.35
521 529 1.442769 GCGAGCAAAACCATCTGAGA 58.557 50.000 0.00 0.00 0.00 3.27
522 530 1.806542 GCGAGCAAAACCATCTGAGAA 59.193 47.619 0.00 0.00 0.00 2.87
523 531 2.413371 GCGAGCAAAACCATCTGAGAAC 60.413 50.000 0.00 0.00 0.00 3.01
546 563 3.463944 GTCTCTTTGACCCTTTCAACGA 58.536 45.455 0.00 0.00 44.28 3.85
584 601 4.685924 GACCTTATCCGTAACGATTCCAA 58.314 43.478 0.00 0.00 0.00 3.53
623 642 3.546543 TCGCATCCCGATCCCCAC 61.547 66.667 0.00 0.00 41.89 4.61
624 643 3.550431 CGCATCCCGATCCCCACT 61.550 66.667 0.00 0.00 40.02 4.00
625 644 2.427753 GCATCCCGATCCCCACTC 59.572 66.667 0.00 0.00 0.00 3.51
626 645 2.143419 GCATCCCGATCCCCACTCT 61.143 63.158 0.00 0.00 0.00 3.24
627 646 2.053618 CATCCCGATCCCCACTCTC 58.946 63.158 0.00 0.00 0.00 3.20
628 647 0.470833 CATCCCGATCCCCACTCTCT 60.471 60.000 0.00 0.00 0.00 3.10
629 648 0.266152 ATCCCGATCCCCACTCTCTT 59.734 55.000 0.00 0.00 0.00 2.85
630 649 0.397254 TCCCGATCCCCACTCTCTTC 60.397 60.000 0.00 0.00 0.00 2.87
631 650 0.397816 CCCGATCCCCACTCTCTTCT 60.398 60.000 0.00 0.00 0.00 2.85
649 674 1.544691 TCTTCTTCCACTAGCGTCACC 59.455 52.381 0.00 0.00 0.00 4.02
744 798 3.736759 CGGAATAAACAAAACAAACCCGG 59.263 43.478 0.00 0.00 0.00 5.73
873 1015 6.291377 GTCGACCGGACCATATATATACCTA 58.709 44.000 9.46 0.00 39.90 3.08
874 1016 6.203723 GTCGACCGGACCATATATATACCTAC 59.796 46.154 9.46 0.00 39.90 3.18
876 1018 6.603110 ACCGGACCATATATATACCTACCT 57.397 41.667 9.46 0.00 0.00 3.08
951 1138 1.612462 CCAGCCATCACTCAGCTCAAA 60.612 52.381 0.00 0.00 33.70 2.69
989 1223 3.712881 GGCGGCGAGAACACACAC 61.713 66.667 12.98 0.00 0.00 3.82
993 1227 1.278172 CGGCGAGAACACACACAGAG 61.278 60.000 0.00 0.00 0.00 3.35
994 1228 0.249489 GGCGAGAACACACACAGAGT 60.249 55.000 0.00 0.00 0.00 3.24
1225 1505 4.083862 ACCTCTTCTTCCCGGCGC 62.084 66.667 0.00 0.00 0.00 6.53
1753 2081 4.750598 TCGACAACACGGATAAATTTCACA 59.249 37.500 0.00 0.00 0.00 3.58
1754 2082 5.410132 TCGACAACACGGATAAATTTCACAT 59.590 36.000 0.00 0.00 0.00 3.21
1756 2084 6.899771 CGACAACACGGATAAATTTCACATAG 59.100 38.462 0.00 0.00 0.00 2.23
1757 2085 7.201487 CGACAACACGGATAAATTTCACATAGA 60.201 37.037 0.00 0.00 0.00 1.98
1761 2089 5.470098 CACGGATAAATTTCACATAGAGGGG 59.530 44.000 0.00 0.00 0.00 4.79
1831 2164 6.531923 ACTATTAGCGAGTACCAGATAGACA 58.468 40.000 0.00 0.00 0.00 3.41
1833 2166 6.902771 ATTAGCGAGTACCAGATAGACAAT 57.097 37.500 0.00 0.00 0.00 2.71
1834 2167 4.839668 AGCGAGTACCAGATAGACAATC 57.160 45.455 0.00 0.00 34.52 2.67
1835 2168 4.207955 AGCGAGTACCAGATAGACAATCA 58.792 43.478 0.00 0.00 37.03 2.57
1836 2169 4.277174 AGCGAGTACCAGATAGACAATCAG 59.723 45.833 0.00 0.00 37.03 2.90
1948 2372 4.002982 TGTGTTCAACCATACTCATCTGC 58.997 43.478 0.00 0.00 0.00 4.26
1971 2400 5.356751 GCCATGTTGTATGTAGACAAATCCA 59.643 40.000 0.00 0.00 40.88 3.41
2075 2505 6.428083 TGGAACTCTAATGGTGTTTAGACA 57.572 37.500 0.00 0.00 34.16 3.41
2162 2593 1.062587 GGTTCGCCAATGAAGACGATG 59.937 52.381 0.00 0.00 37.19 3.84
2199 2630 0.888619 CAACTCTCACCGACTAGGCA 59.111 55.000 0.00 0.00 46.52 4.75
2210 2641 1.338674 CGACTAGGCAAACCCACATGA 60.339 52.381 0.00 0.00 36.11 3.07
2243 2755 5.549347 TCATTGGCAAGCAATGTTAACATT 58.451 33.333 24.88 24.88 46.62 2.71
2272 2784 4.955925 TGCTACATGGTTTAAATGACCG 57.044 40.909 0.00 0.00 40.13 4.79
2322 2834 5.116084 TGGAGGCTATGAGCTTAAACAAT 57.884 39.130 0.00 0.00 41.99 2.71
2329 2841 3.281341 TGAGCTTAAACAATGCCAACG 57.719 42.857 0.00 0.00 0.00 4.10
2333 2845 4.981794 AGCTTAAACAATGCCAACGTATC 58.018 39.130 0.00 0.00 0.00 2.24
2348 2860 0.933509 GTATCGCGGCACCTCTAACG 60.934 60.000 6.13 0.00 0.00 3.18
2360 2872 2.870411 ACCTCTAACGTTTGTGCAAGAC 59.130 45.455 5.91 0.00 0.00 3.01
2471 2984 4.142790 TGACGGTACCTGAGATAGATTCC 58.857 47.826 10.90 0.00 0.00 3.01
2501 3014 9.654663 GACAATAATCTTAGACTTACAGGTGTT 57.345 33.333 0.00 0.00 0.00 3.32
2519 3032 1.067635 GTTGCCTAACGGAAGGTACGA 60.068 52.381 7.11 0.00 39.02 3.43
2539 3052 2.887568 CGATGGCGTGTGCTCCTC 60.888 66.667 0.00 0.00 42.25 3.71
2543 3056 0.833287 ATGGCGTGTGCTCCTCTAAT 59.167 50.000 0.00 0.00 42.25 1.73
2544 3057 0.613260 TGGCGTGTGCTCCTCTAATT 59.387 50.000 0.00 0.00 42.25 1.40
2545 3058 1.828595 TGGCGTGTGCTCCTCTAATTA 59.171 47.619 0.00 0.00 42.25 1.40
2546 3059 2.434336 TGGCGTGTGCTCCTCTAATTAT 59.566 45.455 0.00 0.00 42.25 1.28
2547 3060 3.639561 TGGCGTGTGCTCCTCTAATTATA 59.360 43.478 0.00 0.00 42.25 0.98
2548 3061 3.988517 GGCGTGTGCTCCTCTAATTATAC 59.011 47.826 0.00 0.00 42.25 1.47
2549 3062 3.988517 GCGTGTGCTCCTCTAATTATACC 59.011 47.826 0.00 0.00 38.39 2.73
2550 3063 4.557205 CGTGTGCTCCTCTAATTATACCC 58.443 47.826 0.00 0.00 0.00 3.69
2551 3064 4.560919 CGTGTGCTCCTCTAATTATACCCC 60.561 50.000 0.00 0.00 0.00 4.95
2552 3065 3.908103 TGTGCTCCTCTAATTATACCCCC 59.092 47.826 0.00 0.00 0.00 5.40
2553 3066 3.908103 GTGCTCCTCTAATTATACCCCCA 59.092 47.826 0.00 0.00 0.00 4.96
2554 3067 3.908103 TGCTCCTCTAATTATACCCCCAC 59.092 47.826 0.00 0.00 0.00 4.61
2555 3068 3.263681 GCTCCTCTAATTATACCCCCACC 59.736 52.174 0.00 0.00 0.00 4.61
2556 3069 3.844804 CTCCTCTAATTATACCCCCACCC 59.155 52.174 0.00 0.00 0.00 4.61
2557 3070 2.917600 CCTCTAATTATACCCCCACCCC 59.082 54.545 0.00 0.00 0.00 4.95
2580 3093 4.733542 CCACCCCCGCGGTCAAAT 62.734 66.667 26.12 1.04 43.58 2.32
2581 3094 2.675075 CACCCCCGCGGTCAAATT 60.675 61.111 26.12 0.00 43.58 1.82
2582 3095 2.116556 ACCCCCGCGGTCAAATTT 59.883 55.556 26.12 0.00 43.58 1.82
2587 6705 1.067213 CCCCGCGGTCAAATTTCATTT 60.067 47.619 26.12 0.00 0.00 2.32
2608 6726 1.065272 GTGTGCCCGTCCCCTAAATTA 60.065 52.381 0.00 0.00 0.00 1.40
2642 6760 7.721399 ACCATTCATTCCTAATAAGCCTGTAAG 59.279 37.037 0.00 0.00 0.00 2.34
2669 6787 9.823647 CCATCAGTATGTGTAGAATTACTCTTT 57.176 33.333 0.00 0.00 37.40 2.52
2683 6801 8.897752 AGAATTACTCTTTCATGTCTATTTGCC 58.102 33.333 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.526506 AGCAAATCCTCCATAAGCAAATC 57.473 39.130 0.00 0.00 0.00 2.17
2 3 3.378112 CGAGCAAATCCTCCATAAGCAAA 59.622 43.478 0.00 0.00 0.00 3.68
5 6 1.876156 CCGAGCAAATCCTCCATAAGC 59.124 52.381 0.00 0.00 0.00 3.09
6 7 3.475566 TCCGAGCAAATCCTCCATAAG 57.524 47.619 0.00 0.00 0.00 1.73
8 9 3.007290 CAGATCCGAGCAAATCCTCCATA 59.993 47.826 0.00 0.00 0.00 2.74
9 10 2.053244 AGATCCGAGCAAATCCTCCAT 58.947 47.619 0.00 0.00 0.00 3.41
12 13 2.611225 ACAGATCCGAGCAAATCCTC 57.389 50.000 0.00 0.00 0.00 3.71
13 14 2.739932 CGAACAGATCCGAGCAAATCCT 60.740 50.000 0.00 0.00 0.00 3.24
14 15 1.594862 CGAACAGATCCGAGCAAATCC 59.405 52.381 0.00 0.00 0.00 3.01
15 16 2.271800 ACGAACAGATCCGAGCAAATC 58.728 47.619 0.00 0.00 0.00 2.17
16 17 2.271800 GACGAACAGATCCGAGCAAAT 58.728 47.619 0.00 0.00 0.00 2.32
17 18 1.710013 GACGAACAGATCCGAGCAAA 58.290 50.000 0.00 0.00 0.00 3.68
18 19 0.456142 CGACGAACAGATCCGAGCAA 60.456 55.000 0.00 0.00 0.00 3.91
19 20 1.136774 CGACGAACAGATCCGAGCA 59.863 57.895 0.00 0.00 0.00 4.26
20 21 0.456312 AACGACGAACAGATCCGAGC 60.456 55.000 0.00 0.00 0.00 5.03
21 22 1.536149 GAACGACGAACAGATCCGAG 58.464 55.000 0.00 0.00 0.00 4.63
22 23 0.179207 CGAACGACGAACAGATCCGA 60.179 55.000 0.00 0.00 45.77 4.55
23 24 0.453950 ACGAACGACGAACAGATCCG 60.454 55.000 0.00 0.00 45.77 4.18
24 25 1.135746 AGACGAACGACGAACAGATCC 60.136 52.381 0.00 0.00 45.77 3.36
25 26 2.244281 AGACGAACGACGAACAGATC 57.756 50.000 0.00 0.00 45.77 2.75
26 27 2.740981 AGTAGACGAACGACGAACAGAT 59.259 45.455 0.00 0.00 45.77 2.90
27 28 2.138320 AGTAGACGAACGACGAACAGA 58.862 47.619 0.00 0.00 45.77 3.41
28 29 2.591066 AGTAGACGAACGACGAACAG 57.409 50.000 0.00 0.00 45.77 3.16
29 30 3.338818 AAAGTAGACGAACGACGAACA 57.661 42.857 0.00 0.00 45.77 3.18
30 31 4.027377 ACAAAAAGTAGACGAACGACGAAC 60.027 41.667 0.00 8.05 45.77 3.95
31 32 4.027458 CACAAAAAGTAGACGAACGACGAA 60.027 41.667 0.00 0.00 45.77 3.85
32 33 3.483196 CACAAAAAGTAGACGAACGACGA 59.517 43.478 0.00 0.00 45.77 4.20
34 35 4.501921 AGACACAAAAAGTAGACGAACGAC 59.498 41.667 0.14 0.00 0.00 4.34
35 36 4.675510 AGACACAAAAAGTAGACGAACGA 58.324 39.130 0.14 0.00 0.00 3.85
36 37 5.005012 TGAAGACACAAAAAGTAGACGAACG 59.995 40.000 0.00 0.00 0.00 3.95
37 38 6.340537 TGAAGACACAAAAAGTAGACGAAC 57.659 37.500 0.00 0.00 0.00 3.95
38 39 6.592607 ACTTGAAGACACAAAAAGTAGACGAA 59.407 34.615 0.00 0.00 29.56 3.85
39 40 6.103997 ACTTGAAGACACAAAAAGTAGACGA 58.896 36.000 0.00 0.00 29.56 4.20
40 41 6.345920 ACTTGAAGACACAAAAAGTAGACG 57.654 37.500 0.00 0.00 29.56 4.18
41 42 6.967199 CCAACTTGAAGACACAAAAAGTAGAC 59.033 38.462 0.00 0.00 31.09 2.59
42 43 6.882140 TCCAACTTGAAGACACAAAAAGTAGA 59.118 34.615 0.00 0.00 31.09 2.59
43 44 7.083875 TCCAACTTGAAGACACAAAAAGTAG 57.916 36.000 0.00 0.00 31.09 2.57
44 45 7.201785 GGATCCAACTTGAAGACACAAAAAGTA 60.202 37.037 6.95 0.00 31.09 2.24
45 46 5.975693 TCCAACTTGAAGACACAAAAAGT 57.024 34.783 0.00 0.00 32.60 2.66
46 47 5.979517 GGATCCAACTTGAAGACACAAAAAG 59.020 40.000 6.95 0.00 0.00 2.27
47 48 5.656416 AGGATCCAACTTGAAGACACAAAAA 59.344 36.000 15.82 0.00 0.00 1.94
48 49 5.200483 AGGATCCAACTTGAAGACACAAAA 58.800 37.500 15.82 0.00 0.00 2.44
49 50 4.792068 AGGATCCAACTTGAAGACACAAA 58.208 39.130 15.82 0.00 0.00 2.83
50 51 4.437682 AGGATCCAACTTGAAGACACAA 57.562 40.909 15.82 0.00 0.00 3.33
51 52 4.389374 GAAGGATCCAACTTGAAGACACA 58.611 43.478 15.82 0.00 0.00 3.72
52 53 3.753797 GGAAGGATCCAACTTGAAGACAC 59.246 47.826 15.82 0.00 45.79 3.67
53 54 4.021102 GGAAGGATCCAACTTGAAGACA 57.979 45.455 15.82 0.00 45.79 3.41
65 66 3.610911 AGAACGTTGATTGGAAGGATCC 58.389 45.455 5.00 2.48 46.76 3.36
66 67 5.181245 TGAAAGAACGTTGATTGGAAGGATC 59.819 40.000 5.00 0.00 0.00 3.36
67 68 5.070001 TGAAAGAACGTTGATTGGAAGGAT 58.930 37.500 5.00 0.00 0.00 3.24
68 69 4.456535 TGAAAGAACGTTGATTGGAAGGA 58.543 39.130 5.00 0.00 0.00 3.36
69 70 4.829064 TGAAAGAACGTTGATTGGAAGG 57.171 40.909 5.00 0.00 0.00 3.46
70 71 5.082059 CGATGAAAGAACGTTGATTGGAAG 58.918 41.667 5.00 0.00 0.00 3.46
71 72 4.752604 TCGATGAAAGAACGTTGATTGGAA 59.247 37.500 5.00 0.00 0.00 3.53
72 73 4.151689 GTCGATGAAAGAACGTTGATTGGA 59.848 41.667 5.00 0.00 0.00 3.53
73 74 4.394795 GTCGATGAAAGAACGTTGATTGG 58.605 43.478 5.00 0.00 0.00 3.16
74 75 4.074949 CGTCGATGAAAGAACGTTGATTG 58.925 43.478 5.00 0.00 0.00 2.67
75 76 3.122948 CCGTCGATGAAAGAACGTTGATT 59.877 43.478 5.00 0.00 0.00 2.57
76 77 2.666508 CCGTCGATGAAAGAACGTTGAT 59.333 45.455 5.00 0.00 0.00 2.57
77 78 2.055838 CCGTCGATGAAAGAACGTTGA 58.944 47.619 5.00 0.00 0.00 3.18
78 79 1.461888 GCCGTCGATGAAAGAACGTTG 60.462 52.381 5.00 0.00 0.00 4.10
79 80 0.788391 GCCGTCGATGAAAGAACGTT 59.212 50.000 6.11 0.00 0.00 3.99
80 81 1.342082 CGCCGTCGATGAAAGAACGT 61.342 55.000 6.11 0.00 38.10 3.99
81 82 1.340465 CGCCGTCGATGAAAGAACG 59.660 57.895 6.11 0.00 38.10 3.95
82 83 1.012486 ACCGCCGTCGATGAAAGAAC 61.012 55.000 6.11 0.00 38.10 3.01
83 84 0.320073 AACCGCCGTCGATGAAAGAA 60.320 50.000 6.11 0.00 38.10 2.52
84 85 1.011968 CAACCGCCGTCGATGAAAGA 61.012 55.000 6.11 0.00 38.10 2.52
85 86 1.419922 CAACCGCCGTCGATGAAAG 59.580 57.895 6.11 0.00 38.10 2.62
86 87 2.673114 GCAACCGCCGTCGATGAAA 61.673 57.895 6.11 0.00 38.10 2.69
87 88 3.115892 GCAACCGCCGTCGATGAA 61.116 61.111 6.11 0.00 38.10 2.57
88 89 4.063967 AGCAACCGCCGTCGATGA 62.064 61.111 6.11 0.00 39.83 2.92
89 90 3.853330 CAGCAACCGCCGTCGATG 61.853 66.667 0.00 0.00 39.83 3.84
90 91 3.876589 AACAGCAACCGCCGTCGAT 62.877 57.895 0.00 0.00 39.83 3.59
91 92 4.595538 AACAGCAACCGCCGTCGA 62.596 61.111 0.00 0.00 39.83 4.20
92 93 4.072088 GAACAGCAACCGCCGTCG 62.072 66.667 0.00 0.00 39.83 5.12
93 94 1.352156 CTAGAACAGCAACCGCCGTC 61.352 60.000 0.00 0.00 39.83 4.79
94 95 1.374252 CTAGAACAGCAACCGCCGT 60.374 57.895 0.00 0.00 39.83 5.68
95 96 1.374252 ACTAGAACAGCAACCGCCG 60.374 57.895 0.00 0.00 39.83 6.46
96 97 1.912371 GCACTAGAACAGCAACCGCC 61.912 60.000 0.00 0.00 39.83 6.13
97 98 1.497722 GCACTAGAACAGCAACCGC 59.502 57.895 0.00 0.00 38.99 5.68
98 99 1.781555 CGCACTAGAACAGCAACCG 59.218 57.895 0.00 0.00 0.00 4.44
99 100 0.951040 AGCGCACTAGAACAGCAACC 60.951 55.000 11.47 0.00 0.00 3.77
100 101 0.164647 CAGCGCACTAGAACAGCAAC 59.835 55.000 11.47 0.00 0.00 4.17
101 102 0.950555 CCAGCGCACTAGAACAGCAA 60.951 55.000 11.47 0.00 0.00 3.91
102 103 1.374631 CCAGCGCACTAGAACAGCA 60.375 57.895 11.47 0.00 0.00 4.41
103 104 1.355066 GACCAGCGCACTAGAACAGC 61.355 60.000 11.47 0.00 0.00 4.40
104 105 0.244994 AGACCAGCGCACTAGAACAG 59.755 55.000 11.47 0.00 0.00 3.16
105 106 0.679505 AAGACCAGCGCACTAGAACA 59.320 50.000 11.47 0.00 0.00 3.18
106 107 2.649331 TAAGACCAGCGCACTAGAAC 57.351 50.000 11.47 0.00 0.00 3.01
107 108 2.159099 CCATAAGACCAGCGCACTAGAA 60.159 50.000 11.47 0.00 0.00 2.10
108 109 1.409064 CCATAAGACCAGCGCACTAGA 59.591 52.381 11.47 0.00 0.00 2.43
109 110 1.539065 CCCATAAGACCAGCGCACTAG 60.539 57.143 11.47 0.00 0.00 2.57
110 111 0.464036 CCCATAAGACCAGCGCACTA 59.536 55.000 11.47 0.00 0.00 2.74
111 112 1.221840 CCCATAAGACCAGCGCACT 59.778 57.895 11.47 0.00 0.00 4.40
112 113 2.472909 GCCCATAAGACCAGCGCAC 61.473 63.158 11.47 0.00 0.00 5.34
113 114 2.124736 GCCCATAAGACCAGCGCA 60.125 61.111 11.47 0.00 0.00 6.09
114 115 2.893682 AAGGCCCATAAGACCAGCGC 62.894 60.000 0.00 0.00 0.00 5.92
115 116 0.468226 TAAGGCCCATAAGACCAGCG 59.532 55.000 0.00 0.00 0.00 5.18
116 117 1.202818 CCTAAGGCCCATAAGACCAGC 60.203 57.143 0.00 0.00 0.00 4.85
117 118 2.104963 GTCCTAAGGCCCATAAGACCAG 59.895 54.545 0.00 0.00 0.00 4.00
118 119 2.124411 GTCCTAAGGCCCATAAGACCA 58.876 52.381 0.00 0.00 0.00 4.02
119 120 1.070289 CGTCCTAAGGCCCATAAGACC 59.930 57.143 0.00 0.00 0.00 3.85
120 121 2.037144 TCGTCCTAAGGCCCATAAGAC 58.963 52.381 0.00 1.82 0.00 3.01
121 122 2.464796 TCGTCCTAAGGCCCATAAGA 57.535 50.000 0.00 0.00 0.00 2.10
122 123 2.632996 TCATCGTCCTAAGGCCCATAAG 59.367 50.000 0.00 0.00 0.00 1.73
123 124 2.367567 GTCATCGTCCTAAGGCCCATAA 59.632 50.000 0.00 0.00 0.00 1.90
124 125 1.968493 GTCATCGTCCTAAGGCCCATA 59.032 52.381 0.00 0.00 0.00 2.74
125 126 0.759346 GTCATCGTCCTAAGGCCCAT 59.241 55.000 0.00 0.00 0.00 4.00
126 127 0.325296 AGTCATCGTCCTAAGGCCCA 60.325 55.000 0.00 0.00 0.00 5.36
127 128 0.831307 AAGTCATCGTCCTAAGGCCC 59.169 55.000 0.00 0.00 0.00 5.80
128 129 1.757699 AGAAGTCATCGTCCTAAGGCC 59.242 52.381 0.00 0.00 0.00 5.19
129 130 2.541999 CGAGAAGTCATCGTCCTAAGGC 60.542 54.545 0.00 0.00 35.48 4.35
130 131 2.943690 TCGAGAAGTCATCGTCCTAAGG 59.056 50.000 0.00 0.00 40.95 2.69
131 132 3.623960 AGTCGAGAAGTCATCGTCCTAAG 59.376 47.826 0.00 0.00 40.95 2.18
132 133 3.374367 CAGTCGAGAAGTCATCGTCCTAA 59.626 47.826 0.00 0.00 40.95 2.69
133 134 2.937149 CAGTCGAGAAGTCATCGTCCTA 59.063 50.000 0.00 0.00 40.95 2.94
134 135 1.740585 CAGTCGAGAAGTCATCGTCCT 59.259 52.381 0.00 0.00 40.95 3.85
135 136 1.469308 ACAGTCGAGAAGTCATCGTCC 59.531 52.381 0.00 0.00 40.95 4.79
136 137 2.417239 AGACAGTCGAGAAGTCATCGTC 59.583 50.000 12.59 0.00 40.95 4.20
137 138 2.428491 AGACAGTCGAGAAGTCATCGT 58.572 47.619 12.59 0.00 40.95 3.73
138 139 3.619483 ACTAGACAGTCGAGAAGTCATCG 59.381 47.826 16.88 0.00 41.50 3.84
139 140 5.581479 TGTACTAGACAGTCGAGAAGTCATC 59.419 44.000 16.88 5.10 36.14 2.92
140 141 5.352016 GTGTACTAGACAGTCGAGAAGTCAT 59.648 44.000 16.88 0.00 39.29 3.06
141 142 4.689812 GTGTACTAGACAGTCGAGAAGTCA 59.310 45.833 16.88 7.46 39.29 3.41
142 143 4.093261 GGTGTACTAGACAGTCGAGAAGTC 59.907 50.000 16.88 4.19 39.29 3.01
143 144 4.002316 GGTGTACTAGACAGTCGAGAAGT 58.998 47.826 16.88 10.86 39.29 3.01
144 145 4.001652 TGGTGTACTAGACAGTCGAGAAG 58.998 47.826 16.88 5.83 39.29 2.85
145 146 4.011966 TGGTGTACTAGACAGTCGAGAA 57.988 45.455 16.88 0.40 39.29 2.87
146 147 3.690475 TGGTGTACTAGACAGTCGAGA 57.310 47.619 16.88 0.00 39.29 4.04
147 148 3.752222 ACTTGGTGTACTAGACAGTCGAG 59.248 47.826 9.03 9.03 39.29 4.04
148 149 3.748083 ACTTGGTGTACTAGACAGTCGA 58.252 45.455 0.00 0.00 39.29 4.20
149 150 4.215827 AGAACTTGGTGTACTAGACAGTCG 59.784 45.833 0.00 0.00 39.29 4.18
150 151 5.462405 CAGAACTTGGTGTACTAGACAGTC 58.538 45.833 0.00 0.00 39.29 3.51
151 152 4.262079 GCAGAACTTGGTGTACTAGACAGT 60.262 45.833 0.00 0.00 39.29 3.55
152 153 4.238514 GCAGAACTTGGTGTACTAGACAG 58.761 47.826 0.00 0.00 39.29 3.51
153 154 3.006537 GGCAGAACTTGGTGTACTAGACA 59.993 47.826 0.00 0.00 34.94 3.41
154 155 3.586892 GGCAGAACTTGGTGTACTAGAC 58.413 50.000 0.00 0.00 0.00 2.59
155 156 2.565834 GGGCAGAACTTGGTGTACTAGA 59.434 50.000 0.00 0.00 0.00 2.43
156 157 2.567615 AGGGCAGAACTTGGTGTACTAG 59.432 50.000 0.00 0.00 0.00 2.57
157 158 2.616524 AGGGCAGAACTTGGTGTACTA 58.383 47.619 0.00 0.00 0.00 1.82
158 159 1.435256 AGGGCAGAACTTGGTGTACT 58.565 50.000 0.00 0.00 0.00 2.73
159 160 1.880027 CAAGGGCAGAACTTGGTGTAC 59.120 52.381 0.00 0.00 41.16 2.90
160 161 1.771854 TCAAGGGCAGAACTTGGTGTA 59.228 47.619 5.46 0.00 44.13 2.90
161 162 0.550914 TCAAGGGCAGAACTTGGTGT 59.449 50.000 5.46 0.00 44.13 4.16
162 163 1.242076 CTCAAGGGCAGAACTTGGTG 58.758 55.000 5.46 0.00 44.13 4.17
163 164 0.111253 CCTCAAGGGCAGAACTTGGT 59.889 55.000 5.46 0.00 44.13 3.67
164 165 2.952714 CCTCAAGGGCAGAACTTGG 58.047 57.895 5.46 0.00 44.13 3.61
175 176 1.076485 CATTGCCCCTCCCTCAAGG 60.076 63.158 0.00 0.00 36.08 3.61
176 177 0.394899 GTCATTGCCCCTCCCTCAAG 60.395 60.000 0.00 0.00 0.00 3.02
177 178 1.691219 GTCATTGCCCCTCCCTCAA 59.309 57.895 0.00 0.00 0.00 3.02
178 179 2.669133 CGTCATTGCCCCTCCCTCA 61.669 63.158 0.00 0.00 0.00 3.86
179 180 2.190578 CGTCATTGCCCCTCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
180 181 3.411517 CCGTCATTGCCCCTCCCT 61.412 66.667 0.00 0.00 0.00 4.20
215 216 2.604855 CGACGACTACAAGCACTGAAGT 60.605 50.000 0.00 0.00 0.00 3.01
216 217 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
217 218 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
218 219 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
219 220 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
220 221 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
221 222 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
222 223 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
223 224 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
224 225 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
225 226 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
226 227 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
227 228 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
228 229 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
229 230 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
230 231 1.002684 CATAGACCACCTAGCGACGAC 60.003 57.143 0.00 0.00 0.00 4.34
231 232 1.134310 TCATAGACCACCTAGCGACGA 60.134 52.381 0.00 0.00 0.00 4.20
232 233 1.306148 TCATAGACCACCTAGCGACG 58.694 55.000 0.00 0.00 0.00 5.12
233 234 3.570550 AGATTCATAGACCACCTAGCGAC 59.429 47.826 0.00 0.00 0.00 5.19
234 235 3.570125 CAGATTCATAGACCACCTAGCGA 59.430 47.826 0.00 0.00 0.00 4.93
235 236 3.305676 CCAGATTCATAGACCACCTAGCG 60.306 52.174 0.00 0.00 0.00 4.26
236 237 3.898123 TCCAGATTCATAGACCACCTAGC 59.102 47.826 0.00 0.00 0.00 3.42
237 238 5.541868 ACATCCAGATTCATAGACCACCTAG 59.458 44.000 0.00 0.00 0.00 3.02
238 239 5.467738 ACATCCAGATTCATAGACCACCTA 58.532 41.667 0.00 0.00 0.00 3.08
239 240 4.302067 ACATCCAGATTCATAGACCACCT 58.698 43.478 0.00 0.00 0.00 4.00
240 241 4.696479 ACATCCAGATTCATAGACCACC 57.304 45.455 0.00 0.00 0.00 4.61
241 242 8.682936 AAAATACATCCAGATTCATAGACCAC 57.317 34.615 0.00 0.00 0.00 4.16
264 265 8.853469 ACAACGAACACCGAAAATAATAAAAA 57.147 26.923 0.00 0.00 41.76 1.94
265 266 9.379811 GTACAACGAACACCGAAAATAATAAAA 57.620 29.630 0.00 0.00 41.76 1.52
266 267 8.772705 AGTACAACGAACACCGAAAATAATAAA 58.227 29.630 0.00 0.00 41.76 1.40
267 268 8.309163 AGTACAACGAACACCGAAAATAATAA 57.691 30.769 0.00 0.00 41.76 1.40
268 269 7.887996 AGTACAACGAACACCGAAAATAATA 57.112 32.000 0.00 0.00 41.76 0.98
269 270 6.790285 AGTACAACGAACACCGAAAATAAT 57.210 33.333 0.00 0.00 41.76 1.28
270 271 7.598118 TGATAGTACAACGAACACCGAAAATAA 59.402 33.333 0.00 0.00 41.76 1.40
271 272 7.089538 TGATAGTACAACGAACACCGAAAATA 58.910 34.615 0.00 0.00 41.76 1.40
272 273 5.927689 TGATAGTACAACGAACACCGAAAAT 59.072 36.000 0.00 0.00 41.76 1.82
273 274 5.288015 TGATAGTACAACGAACACCGAAAA 58.712 37.500 0.00 0.00 41.76 2.29
274 275 4.869215 TGATAGTACAACGAACACCGAAA 58.131 39.130 0.00 0.00 41.76 3.46
275 276 4.502171 TGATAGTACAACGAACACCGAA 57.498 40.909 0.00 0.00 41.76 4.30
276 277 4.707030 ATGATAGTACAACGAACACCGA 57.293 40.909 0.00 0.00 41.76 4.69
277 278 7.221259 TCAATAATGATAGTACAACGAACACCG 59.779 37.037 0.00 0.00 45.44 4.94
278 279 8.415192 TCAATAATGATAGTACAACGAACACC 57.585 34.615 0.00 0.00 0.00 4.16
279 280 9.901724 CTTCAATAATGATAGTACAACGAACAC 57.098 33.333 0.00 0.00 34.96 3.32
280 281 9.863845 TCTTCAATAATGATAGTACAACGAACA 57.136 29.630 0.00 0.00 34.96 3.18
292 293 9.387257 CCGATCCATTCATCTTCAATAATGATA 57.613 33.333 0.00 0.00 34.96 2.15
293 294 8.105197 TCCGATCCATTCATCTTCAATAATGAT 58.895 33.333 0.00 0.00 34.96 2.45
294 295 7.452562 TCCGATCCATTCATCTTCAATAATGA 58.547 34.615 0.00 0.00 32.29 2.57
295 296 7.677454 TCCGATCCATTCATCTTCAATAATG 57.323 36.000 0.00 0.00 0.00 1.90
296 297 7.886970 ACATCCGATCCATTCATCTTCAATAAT 59.113 33.333 0.00 0.00 0.00 1.28
297 298 7.226441 ACATCCGATCCATTCATCTTCAATAA 58.774 34.615 0.00 0.00 0.00 1.40
298 299 6.772605 ACATCCGATCCATTCATCTTCAATA 58.227 36.000 0.00 0.00 0.00 1.90
299 300 5.628130 ACATCCGATCCATTCATCTTCAAT 58.372 37.500 0.00 0.00 0.00 2.57
300 301 5.039920 ACATCCGATCCATTCATCTTCAA 57.960 39.130 0.00 0.00 0.00 2.69
301 302 4.694760 ACATCCGATCCATTCATCTTCA 57.305 40.909 0.00 0.00 0.00 3.02
302 303 6.382869 AAAACATCCGATCCATTCATCTTC 57.617 37.500 0.00 0.00 0.00 2.87
303 304 5.300286 GGAAAACATCCGATCCATTCATCTT 59.700 40.000 0.00 0.00 38.79 2.40
304 305 4.823989 GGAAAACATCCGATCCATTCATCT 59.176 41.667 0.00 0.00 38.79 2.90
305 306 5.113502 GGAAAACATCCGATCCATTCATC 57.886 43.478 0.00 0.00 38.79 2.92
401 402 9.490663 CGACAAGACAAAAGGCTATTTATTAAG 57.509 33.333 0.00 0.00 0.00 1.85
402 403 9.221933 TCGACAAGACAAAAGGCTATTTATTAA 57.778 29.630 0.00 0.00 0.00 1.40
403 404 8.780846 TCGACAAGACAAAAGGCTATTTATTA 57.219 30.769 0.00 0.00 0.00 0.98
404 405 7.681939 TCGACAAGACAAAAGGCTATTTATT 57.318 32.000 0.00 0.00 0.00 1.40
405 406 7.681939 TTCGACAAGACAAAAGGCTATTTAT 57.318 32.000 0.00 0.00 0.00 1.40
406 407 7.499321 TTTCGACAAGACAAAAGGCTATTTA 57.501 32.000 0.00 0.00 0.00 1.40
407 408 6.385649 TTTCGACAAGACAAAAGGCTATTT 57.614 33.333 0.00 0.00 0.00 1.40
408 409 6.385649 TTTTCGACAAGACAAAAGGCTATT 57.614 33.333 0.00 0.00 0.00 1.73
409 410 6.385649 TTTTTCGACAAGACAAAAGGCTAT 57.614 33.333 0.00 0.00 0.00 2.97
410 411 5.821516 TTTTTCGACAAGACAAAAGGCTA 57.178 34.783 0.00 0.00 0.00 3.93
411 412 4.712122 TTTTTCGACAAGACAAAAGGCT 57.288 36.364 0.00 0.00 0.00 4.58
431 432 6.402011 CGATTGCTTGTTGTGTTTTCCTTTTT 60.402 34.615 0.00 0.00 0.00 1.94
436 437 3.701241 TCGATTGCTTGTTGTGTTTTCC 58.299 40.909 0.00 0.00 0.00 3.13
437 438 3.180387 GCTCGATTGCTTGTTGTGTTTTC 59.820 43.478 0.00 0.00 0.00 2.29
445 447 4.457834 ACTAGTAGCTCGATTGCTTGTT 57.542 40.909 4.33 0.00 43.74 2.83
446 448 4.036971 CCTACTAGTAGCTCGATTGCTTGT 59.963 45.833 22.39 6.10 43.74 3.16
456 458 3.223435 TGATGCACCCTACTAGTAGCTC 58.777 50.000 22.39 11.65 31.95 4.09
546 563 2.595463 TCGGTCCGTCAGTCCGTT 60.595 61.111 11.88 0.00 43.94 4.44
621 640 4.674101 CGCTAGTGGAAGAAGAAGAGAGTG 60.674 50.000 0.00 0.00 0.00 3.51
622 641 3.442273 CGCTAGTGGAAGAAGAAGAGAGT 59.558 47.826 0.00 0.00 0.00 3.24
623 642 3.442273 ACGCTAGTGGAAGAAGAAGAGAG 59.558 47.826 8.42 0.00 0.00 3.20
624 643 3.422796 ACGCTAGTGGAAGAAGAAGAGA 58.577 45.455 8.42 0.00 0.00 3.10
625 644 3.191581 TGACGCTAGTGGAAGAAGAAGAG 59.808 47.826 8.42 0.00 0.00 2.85
626 645 3.057456 GTGACGCTAGTGGAAGAAGAAGA 60.057 47.826 8.42 0.00 0.00 2.87
627 646 3.246619 GTGACGCTAGTGGAAGAAGAAG 58.753 50.000 8.42 0.00 0.00 2.85
628 647 2.029290 GGTGACGCTAGTGGAAGAAGAA 60.029 50.000 8.42 0.00 0.00 2.52
629 648 1.544691 GGTGACGCTAGTGGAAGAAGA 59.455 52.381 8.42 0.00 0.00 2.87
630 649 1.997669 GGTGACGCTAGTGGAAGAAG 58.002 55.000 8.42 0.00 0.00 2.85
873 1015 1.864559 AGAGTCTGGGGAGGGAGGT 60.865 63.158 0.00 0.00 0.00 3.85
874 1016 1.075600 GAGAGTCTGGGGAGGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
876 1018 1.149782 AGTGAGAGTCTGGGGAGGGA 61.150 60.000 0.00 0.00 0.00 4.20
951 1138 2.089980 GCTGATTGCCTGATTGTGTCT 58.910 47.619 0.00 0.00 35.15 3.41
975 1209 0.249489 ACTCTGTGTGTGTTCTCGCC 60.249 55.000 0.00 0.00 0.00 5.54
978 1212 3.119291 CTGTGACTCTGTGTGTGTTCTC 58.881 50.000 0.00 0.00 0.00 2.87
994 1228 0.969149 ACGCTGAAGGTCATCTGTGA 59.031 50.000 0.00 0.00 34.20 3.58
1028 1269 2.435693 ATGTACTCCTGGCTCGCCC 61.436 63.158 5.33 0.00 34.56 6.13
1206 1474 2.646175 CGCCGGGAAGAAGAGGTCA 61.646 63.158 2.18 0.00 0.00 4.02
1753 2081 3.499563 CCTGATCGTCTCTTCCCCTCTAT 60.500 52.174 0.00 0.00 0.00 1.98
1754 2082 2.158593 CCTGATCGTCTCTTCCCCTCTA 60.159 54.545 0.00 0.00 0.00 2.43
1756 2084 1.036707 CCTGATCGTCTCTTCCCCTC 58.963 60.000 0.00 0.00 0.00 4.30
1757 2085 0.631753 TCCTGATCGTCTCTTCCCCT 59.368 55.000 0.00 0.00 0.00 4.79
1761 2089 2.295909 CCCTGATCCTGATCGTCTCTTC 59.704 54.545 2.91 0.00 40.63 2.87
1943 2367 5.357742 TGTCTACATACAACATGGCAGAT 57.642 39.130 0.00 0.00 0.00 2.90
1948 2372 7.389803 TTGGATTTGTCTACATACAACATGG 57.610 36.000 0.00 0.00 39.02 3.66
1971 2400 5.073008 AGTTCCAACAAATAAGCCCCAAATT 59.927 36.000 0.00 0.00 0.00 1.82
1976 2405 7.433680 CATTATAGTTCCAACAAATAAGCCCC 58.566 38.462 0.00 0.00 0.00 5.80
2006 2435 7.818997 GGTTTCCCCTGGTTTCTATTAATAG 57.181 40.000 15.25 15.25 0.00 1.73
2102 2532 5.466393 GGGTGCCATGATTTAAAATGTATGC 59.534 40.000 0.00 0.00 0.00 3.14
2107 2537 6.127366 ACACTAGGGTGCCATGATTTAAAATG 60.127 38.462 0.00 0.00 46.57 2.32
2162 2593 0.109272 TGCGAGTGACTCCGATTGTC 60.109 55.000 7.07 0.00 35.21 3.18
2199 2630 6.662865 TGAACATTTATGTCATGTGGGTTT 57.337 33.333 0.00 0.00 40.80 3.27
2210 2641 5.149973 TGCTTGCCAATGAACATTTATGT 57.850 34.783 0.00 0.00 44.20 2.29
2272 2784 0.935196 GGCAACGGATTCGGTCATAC 59.065 55.000 0.00 0.00 41.39 2.39
2329 2841 0.933509 CGTTAGAGGTGCCGCGATAC 60.934 60.000 8.23 5.83 0.00 2.24
2333 2845 2.025418 AAACGTTAGAGGTGCCGCG 61.025 57.895 0.00 0.00 0.00 6.46
2348 2860 1.024271 TGGCTCTGTCTTGCACAAAC 58.976 50.000 0.00 0.00 33.31 2.93
2372 2885 9.706506 TTTCTGTTCGAAATTACGATGCCATCG 62.707 40.741 24.54 24.54 45.69 3.84
2375 2888 3.591023 TCTGTTCGAAATTACGATGCCA 58.409 40.909 0.00 0.00 41.82 4.92
2452 2965 4.081972 CCATGGAATCTATCTCAGGTACCG 60.082 50.000 5.56 1.56 0.00 4.02
2455 2968 5.715921 TGTCCATGGAATCTATCTCAGGTA 58.284 41.667 18.20 0.00 0.00 3.08
2471 2984 9.265901 CCTGTAAGTCTAAGATTATTGTCCATG 57.734 37.037 0.00 0.00 0.00 3.66
2501 3014 1.067635 GTTCGTACCTTCCGTTAGGCA 60.068 52.381 0.25 0.00 38.99 4.75
2519 3032 2.742372 GAGCACACGCCATCGGTT 60.742 61.111 0.00 0.00 39.83 4.44
2522 3035 2.004808 TAGAGGAGCACACGCCATCG 62.005 60.000 0.00 0.00 38.42 3.84
2528 3041 4.557205 GGGTATAATTAGAGGAGCACACG 58.443 47.826 0.00 0.00 0.00 4.49
2566 3079 1.319614 ATGAAATTTGACCGCGGGGG 61.320 55.000 31.76 9.88 43.62 5.40
2568 3081 2.362169 AAATGAAATTTGACCGCGGG 57.638 45.000 31.76 11.88 46.55 6.13
2578 3091 2.288763 GGACGGGCACACAAATGAAATT 60.289 45.455 0.00 0.00 38.98 1.82
2580 3093 0.671251 GGACGGGCACACAAATGAAA 59.329 50.000 0.00 0.00 0.00 2.69
2581 3094 1.175983 GGGACGGGCACACAAATGAA 61.176 55.000 0.00 0.00 0.00 2.57
2582 3095 1.602323 GGGACGGGCACACAAATGA 60.602 57.895 0.00 0.00 0.00 2.57
2587 6705 1.493854 ATTTAGGGGACGGGCACACA 61.494 55.000 0.00 0.00 0.00 3.72
2608 6726 8.852671 TTATTAGGAATGAATGGTTGGGATTT 57.147 30.769 0.00 0.00 0.00 2.17
2642 6760 7.437748 AGAGTAATTCTACACATACTGATGGC 58.562 38.462 0.00 0.00 33.96 4.40
2669 6787 3.342377 TTGTCCGGCAAATAGACATGA 57.658 42.857 0.00 0.00 40.06 3.07
2683 6801 1.394697 GCGTCAACATGTTTTGTCCG 58.605 50.000 8.77 7.89 37.68 4.79
2710 6828 8.742777 TCTAAGCTAATTCAACATTTGCTTCAT 58.257 29.630 16.13 0.96 43.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.