Multiple sequence alignment - TraesCS1D01G375900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G375900 chr1D 100.000 3032 0 0 1 3032 452501146 452498115 0.000000e+00 5600.0
1 TraesCS1D01G375900 chr1D 86.885 183 14 7 2530 2710 469818623 469818449 2.380000e-46 196.0
2 TraesCS1D01G375900 chr1B 92.162 1531 72 17 1 1485 622491434 622489906 0.000000e+00 2119.0
3 TraesCS1D01G375900 chr1B 87.366 934 96 12 1512 2436 622489572 622488652 0.000000e+00 1051.0
4 TraesCS1D01G375900 chr1B 83.486 109 10 6 2929 3030 622487518 622487411 8.950000e-16 95.3
5 TraesCS1D01G375900 chr4B 90.751 173 12 2 2542 2713 564660957 564660788 8.460000e-56 228.0
6 TraesCS1D01G375900 chr7B 88.701 177 14 3 2545 2719 167138853 167138681 8.520000e-51 211.0
7 TraesCS1D01G375900 chr7B 87.709 179 14 6 2538 2713 423421666 423421493 5.130000e-48 202.0
8 TraesCS1D01G375900 chr3B 89.412 170 11 4 2545 2712 380685420 380685256 1.100000e-49 207.0
9 TraesCS1D01G375900 chr7A 86.702 188 19 2 2526 2713 671188244 671188425 1.430000e-48 204.0
10 TraesCS1D01G375900 chr6B 88.824 170 14 4 2545 2713 499005498 499005333 1.430000e-48 204.0
11 TraesCS1D01G375900 chr5B 88.889 171 12 4 2545 2713 700231593 700231428 1.430000e-48 204.0
12 TraesCS1D01G375900 chr2D 89.571 163 14 1 2545 2707 38790222 38790381 1.430000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G375900 chr1D 452498115 452501146 3031 True 5600.000000 5600 100.000000 1 3032 1 chr1D.!!$R1 3031
1 TraesCS1D01G375900 chr1B 622487411 622491434 4023 True 1088.433333 2119 87.671333 1 3030 3 chr1B.!!$R1 3029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.110486 TACGGTACCTCGGTATCCCC 59.890 60.0 10.90 0.0 32.82 4.81 F
1019 1065 0.113776 ATGGAAGCTATGCCATGGGG 59.886 55.0 15.13 0.0 43.04 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1495 1541 0.038892 AACAATTGCAGGCGCTTGAG 60.039 50.0 25.12 9.03 39.64 3.02 R
2826 3890 0.105862 ATAGCACCAAGGGCATGCAT 60.106 50.0 21.36 4.13 41.97 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.020984 ACTTGACACCAATTTCGGTTGT 58.979 40.909 0.00 0.00 37.07 3.32
51 52 3.857052 TGCCGAATGTACTCGAAAGATT 58.143 40.909 6.12 0.00 41.44 2.40
56 57 5.472822 CGAATGTACTCGAAAGATTTGTCG 58.527 41.667 0.00 0.00 41.44 4.35
65 66 5.291178 TCGAAAGATTTGTCGTGGTTAAGA 58.709 37.500 0.00 0.00 38.41 2.10
68 69 5.924475 AAGATTTGTCGTGGTTAAGACAG 57.076 39.130 0.00 0.00 44.16 3.51
69 70 4.957296 AGATTTGTCGTGGTTAAGACAGT 58.043 39.130 0.00 0.00 44.16 3.55
98 99 0.110486 TACGGTACCTCGGTATCCCC 59.890 60.000 10.90 0.00 32.82 4.81
101 102 0.892814 GGTACCTCGGTATCCCCTCG 60.893 65.000 4.06 0.00 32.82 4.63
125 145 3.246619 GAATCTCTCCACTGTCGTTGAC 58.753 50.000 0.00 0.00 0.00 3.18
143 163 0.250597 ACTGGGTTCGCCTGGTAAAC 60.251 55.000 0.00 0.13 37.45 2.01
224 244 5.163652 GCAATCGCTCCTACACCTTAATTTT 60.164 40.000 0.00 0.00 34.30 1.82
237 257 7.433680 ACACCTTAATTTTACAAAGCTTGAGG 58.566 34.615 0.00 0.00 30.91 3.86
319 339 2.289444 TGAAAAGCCTCAAGTACCTCCG 60.289 50.000 0.00 0.00 0.00 4.63
389 409 8.652290 GGAAATATGACATCCTTAGAGGTACTT 58.348 37.037 0.00 0.00 41.55 2.24
406 426 9.220767 AGAGGTACTTGATTTTTCATACAACTC 57.779 33.333 0.00 0.00 41.55 3.01
468 488 4.390297 GCAACTTAGAAGTGCTAGACCTTG 59.610 45.833 0.00 0.00 39.66 3.61
507 527 2.575532 GGGACATACATGTGGTGATGG 58.424 52.381 9.11 0.00 41.95 3.51
518 538 1.555075 GTGGTGATGGAGAAGCTACCA 59.445 52.381 9.14 9.14 40.57 3.25
520 540 1.471676 GGTGATGGAGAAGCTACCACG 60.472 57.143 8.94 0.00 39.06 4.94
533 553 0.533308 TACCACGGTGTGCTTGGAAC 60.533 55.000 7.45 0.00 34.24 3.62
559 579 6.428083 TTTACAGTATCTGGGTTTGAGTGA 57.572 37.500 1.90 0.00 35.51 3.41
604 624 4.279420 GCCAAATTGGATAGGGAATCTGAC 59.721 45.833 17.47 0.00 40.96 3.51
636 656 1.609072 GTTTGGACCTCTCAAGCAACC 59.391 52.381 0.00 0.00 0.00 3.77
637 657 0.250295 TTGGACCTCTCAAGCAACCG 60.250 55.000 0.00 0.00 0.00 4.44
654 674 0.465705 CCGTCTCAGTGGGCATGTAT 59.534 55.000 0.00 0.00 0.00 2.29
673 693 5.185454 TGTATCGTCTGAAATTGGAGCATT 58.815 37.500 0.00 0.00 0.00 3.56
687 707 5.885230 TGGAGCATTGAGTAATTTGACTG 57.115 39.130 0.00 0.00 0.00 3.51
725 745 8.374743 AGCAACAATTCCTTTAATGGTGTAATT 58.625 29.630 7.24 4.10 31.69 1.40
744 764 8.012241 GTGTAATTACAGAGAAGCACTTTGAAG 58.988 37.037 18.56 0.00 36.78 3.02
830 850 2.305927 CTGGCTTCCTCCTTTCCAACTA 59.694 50.000 0.00 0.00 0.00 2.24
890 910 3.454719 TTCCCTTCATGGCTTCAATCA 57.545 42.857 0.00 0.00 0.00 2.57
898 918 5.164620 TCATGGCTTCAATCACAAGTAGA 57.835 39.130 0.00 0.00 0.00 2.59
903 923 5.985530 TGGCTTCAATCACAAGTAGATATCG 59.014 40.000 0.00 0.00 0.00 2.92
904 924 6.183360 TGGCTTCAATCACAAGTAGATATCGA 60.183 38.462 0.00 0.00 0.00 3.59
905 925 6.364706 GGCTTCAATCACAAGTAGATATCGAG 59.635 42.308 0.00 0.00 0.00 4.04
940 960 5.209818 TCAAGTGCGGGTATAAAGGATAG 57.790 43.478 0.00 0.00 0.00 2.08
970 990 2.244510 ACTGGATATGGGCATTTCCACA 59.755 45.455 0.00 0.00 41.75 4.17
971 991 3.298619 CTGGATATGGGCATTTCCACAA 58.701 45.455 0.00 0.00 41.75 3.33
972 992 3.899360 CTGGATATGGGCATTTCCACAAT 59.101 43.478 0.00 0.00 41.75 2.71
973 993 5.072129 TGGATATGGGCATTTCCACAATA 57.928 39.130 0.00 0.00 41.75 1.90
974 994 5.462240 TGGATATGGGCATTTCCACAATAA 58.538 37.500 0.00 0.00 41.75 1.40
975 995 5.901853 TGGATATGGGCATTTCCACAATAAA 59.098 36.000 0.00 0.00 41.75 1.40
984 1030 7.416817 GGCATTTCCACAATAAAATAAATGGC 58.583 34.615 13.83 13.83 45.89 4.40
1014 1060 4.263199 CCTGAGAATATGGAAGCTATGCCA 60.263 45.833 5.47 5.47 38.78 4.92
1019 1065 0.113776 ATGGAAGCTATGCCATGGGG 59.886 55.000 15.13 0.00 43.04 4.96
1074 1120 1.184431 CAATACCACCATTGCCAGCA 58.816 50.000 0.00 0.00 0.00 4.41
1140 1186 2.890311 ACTGCCATCGAATTTTGGTTCA 59.110 40.909 4.77 0.00 35.34 3.18
1154 1200 9.704098 GAATTTTGGTTCACGAGATATAGAAAC 57.296 33.333 0.00 0.00 0.00 2.78
1207 1253 3.624861 CAGCTTCCCAACATCTATGTGTC 59.375 47.826 0.00 0.00 41.61 3.67
1239 1285 2.920724 TGGTCGACTTGGATTTGTCA 57.079 45.000 16.46 0.00 33.18 3.58
1241 1287 3.546724 TGGTCGACTTGGATTTGTCAAA 58.453 40.909 16.46 0.00 33.18 2.69
1282 1328 2.673775 TCCTCAATGTTTTCAGGCCA 57.326 45.000 5.01 0.00 0.00 5.36
1290 1336 6.164876 TCAATGTTTTCAGGCCAATACAATG 58.835 36.000 5.01 6.81 0.00 2.82
1344 1390 5.515106 TCCGGAGAATTCCCAATGTTTATT 58.485 37.500 0.00 0.00 40.67 1.40
1356 1402 5.179182 CCCAATGTTTATTCAAAACTGCACC 59.821 40.000 2.67 0.00 0.00 5.01
1383 1429 3.291584 AGTCATCTTGGATCTAGCACGA 58.708 45.455 0.00 0.00 0.00 4.35
1387 1433 2.876091 TCTTGGATCTAGCACGAAACG 58.124 47.619 0.00 0.00 0.00 3.60
1441 1487 5.452636 GGTGACTTGGCAAATTTGGAGTTTA 60.453 40.000 19.47 0.00 0.00 2.01
1450 1496 7.450014 TGGCAAATTTGGAGTTTATTCTACTGA 59.550 33.333 19.47 0.00 0.00 3.41
1482 1528 9.686683 AATATGTATTCTGGTAATATTCCCAGC 57.313 33.333 19.62 8.40 46.43 4.85
1483 1529 6.508030 TGTATTCTGGTAATATTCCCAGCA 57.492 37.500 19.62 11.45 46.43 4.41
1484 1530 6.533730 TGTATTCTGGTAATATTCCCAGCAG 58.466 40.000 19.62 14.01 46.43 4.24
1485 1531 3.492102 TCTGGTAATATTCCCAGCAGC 57.508 47.619 19.62 0.00 46.43 5.25
1486 1532 2.777114 TCTGGTAATATTCCCAGCAGCA 59.223 45.455 19.62 2.66 46.43 4.41
1487 1533 3.395607 TCTGGTAATATTCCCAGCAGCAT 59.604 43.478 19.62 0.00 46.43 3.79
1488 1534 3.754965 TGGTAATATTCCCAGCAGCATC 58.245 45.455 0.00 0.00 0.00 3.91
1489 1535 3.138098 TGGTAATATTCCCAGCAGCATCA 59.862 43.478 0.00 0.00 0.00 3.07
1490 1536 3.503748 GGTAATATTCCCAGCAGCATCAC 59.496 47.826 0.00 0.00 0.00 3.06
1491 1537 3.301794 AATATTCCCAGCAGCATCACA 57.698 42.857 0.00 0.00 0.00 3.58
1492 1538 2.804986 TATTCCCAGCAGCATCACAA 57.195 45.000 0.00 0.00 0.00 3.33
1493 1539 1.471119 ATTCCCAGCAGCATCACAAG 58.529 50.000 0.00 0.00 0.00 3.16
1494 1540 0.401356 TTCCCAGCAGCATCACAAGA 59.599 50.000 0.00 0.00 0.00 3.02
1495 1541 0.321919 TCCCAGCAGCATCACAAGAC 60.322 55.000 0.00 0.00 0.00 3.01
1496 1542 0.322277 CCCAGCAGCATCACAAGACT 60.322 55.000 0.00 0.00 0.00 3.24
1499 1545 2.148768 CAGCAGCATCACAAGACTCAA 58.851 47.619 0.00 0.00 0.00 3.02
1504 1550 0.445436 CATCACAAGACTCAAGCGCC 59.555 55.000 2.29 0.00 0.00 6.53
1516 1562 1.005867 AAGCGCCTGCAATTGTTGG 60.006 52.632 2.29 10.47 46.23 3.77
1542 1910 3.019564 GGCAAGCAACAATCTATCTGGT 58.980 45.455 0.00 0.00 0.00 4.00
1562 1930 1.613925 TGCCATACCTCAGTATCTCGC 59.386 52.381 0.00 0.00 37.06 5.03
1563 1931 1.613925 GCCATACCTCAGTATCTCGCA 59.386 52.381 0.00 0.00 37.06 5.10
1579 1947 4.574892 TCTCGCAAACTTAACATCCATGA 58.425 39.130 0.00 0.00 0.00 3.07
1610 1978 2.344950 CTTAGCGCCATCATCTGATCC 58.655 52.381 2.29 0.00 31.21 3.36
1620 1988 5.944599 GCCATCATCTGATCCAGTCAATATT 59.055 40.000 0.00 0.00 36.14 1.28
1640 2008 3.668141 TGACCCATTTGAGCATGGTAT 57.332 42.857 0.00 0.00 42.20 2.73
1647 2015 5.413833 CCCATTTGAGCATGGTATCTATGAC 59.586 44.000 0.00 0.00 42.20 3.06
1670 2038 2.368221 TCCCTTTGGCAAGTCAATTTGG 59.632 45.455 0.00 0.00 0.00 3.28
1677 2045 5.549742 TGGCAAGTCAATTTGGAGAAATT 57.450 34.783 0.00 0.00 41.58 1.82
1728 2096 4.676109 TGAAATATGGCCATGGGATTAGG 58.324 43.478 29.04 0.00 0.00 2.69
1733 2101 2.361218 TGGCCATGGGATTAGGATGAT 58.639 47.619 15.13 0.00 0.00 2.45
1762 2130 0.904649 TGATCTCTCATGCAACCGGT 59.095 50.000 0.00 0.00 0.00 5.28
1786 2154 2.700897 ACAGGTAGAATCCCGGAAGATG 59.299 50.000 0.73 0.00 0.00 2.90
1804 2172 5.266733 AGATGTCTCTTCTCTTGATGCTC 57.733 43.478 0.00 0.00 0.00 4.26
1836 2204 9.941664 AATCTAAATTTATCAATGAACGAGCTG 57.058 29.630 0.00 0.00 0.00 4.24
1837 2205 8.716646 TCTAAATTTATCAATGAACGAGCTGA 57.283 30.769 0.00 0.00 0.00 4.26
1839 2207 4.864916 TTTATCAATGAACGAGCTGAGC 57.135 40.909 0.00 0.00 0.00 4.26
1843 2211 0.459237 AATGAACGAGCTGAGCGGAG 60.459 55.000 0.00 0.00 0.00 4.63
1845 2213 1.515304 GAACGAGCTGAGCGGAGAC 60.515 63.158 0.00 0.00 0.00 3.36
1875 2243 0.682209 AGATTGGTGCCATGCAGTCC 60.682 55.000 0.00 0.00 40.08 3.85
1876 2244 1.669999 GATTGGTGCCATGCAGTCCC 61.670 60.000 0.00 0.00 40.08 4.46
1881 2249 2.356278 GCCATGCAGTCCCTGGAA 59.644 61.111 7.48 0.00 35.08 3.53
1898 2266 4.111198 CTGGAATCACTCGATCTGACAAG 58.889 47.826 0.00 0.00 0.00 3.16
1923 2291 1.826385 AGCTTTCTGGTGAAATCCCG 58.174 50.000 0.00 0.00 40.85 5.14
1924 2292 1.073923 AGCTTTCTGGTGAAATCCCGT 59.926 47.619 0.00 0.00 40.85 5.28
1926 2294 2.084546 CTTTCTGGTGAAATCCCGTCC 58.915 52.381 0.00 0.00 40.85 4.79
1930 2298 0.323629 TGGTGAAATCCCGTCCAGTC 59.676 55.000 0.00 0.00 0.00 3.51
1932 2300 1.829222 GGTGAAATCCCGTCCAGTCTA 59.171 52.381 0.00 0.00 0.00 2.59
1938 2306 3.821421 ATCCCGTCCAGTCTATCAAAC 57.179 47.619 0.00 0.00 0.00 2.93
1944 2312 5.475719 CCGTCCAGTCTATCAAACTTAACA 58.524 41.667 0.00 0.00 0.00 2.41
1951 2319 8.258007 CCAGTCTATCAAACTTAACATACCTGA 58.742 37.037 0.00 0.00 0.00 3.86
1976 2344 6.732896 ATACCTGAACCTGTCCTATAACAG 57.267 41.667 0.00 0.00 45.10 3.16
2016 2384 2.110213 GGCCACCAACTCGACACA 59.890 61.111 0.00 0.00 0.00 3.72
2039 2407 2.093181 TCAATGTGGACTAACCCATCCG 60.093 50.000 0.00 0.00 38.66 4.18
2061 2429 2.760634 ATGTACATCGGCAACAGTGA 57.239 45.000 1.41 0.00 0.00 3.41
2086 2454 1.758592 TGGTCCCCCACTCGAAAAG 59.241 57.895 0.00 0.00 35.17 2.27
2097 2465 3.983344 CCACTCGAAAAGAAATGCCAAAG 59.017 43.478 0.00 0.00 0.00 2.77
2113 2481 5.639757 TGCCAAAGAAATGATACATCAACG 58.360 37.500 0.00 0.00 40.69 4.10
2114 2482 5.414144 TGCCAAAGAAATGATACATCAACGA 59.586 36.000 0.00 0.00 40.69 3.85
2131 2499 3.485463 ACGAAAGGTGATCTTGGAACA 57.515 42.857 0.00 0.00 35.55 3.18
2161 2529 7.982354 AGTGAGTCAGGTGAGCTAAATTATTAC 59.018 37.037 0.00 0.00 0.00 1.89
2170 2538 7.122204 GGTGAGCTAAATTATTACTGGTTTGGT 59.878 37.037 0.00 0.00 0.00 3.67
2185 2553 3.313690 GTTTGGTTTTATCGTGGGCTTG 58.686 45.455 0.00 0.00 0.00 4.01
2188 2556 4.223556 TGGTTTTATCGTGGGCTTGATA 57.776 40.909 0.00 0.00 0.00 2.15
2191 2559 4.035208 GGTTTTATCGTGGGCTTGATAGTG 59.965 45.833 0.00 0.00 0.00 2.74
2193 2561 0.469917 ATCGTGGGCTTGATAGTGGG 59.530 55.000 0.00 0.00 0.00 4.61
2233 2601 1.659233 CATGTTGTTCAAGCGGGCA 59.341 52.632 0.00 0.00 0.00 5.36
2251 2619 2.287788 GGCATGGATGGTCGCTTATTTG 60.288 50.000 0.00 0.00 0.00 2.32
2265 2633 0.248012 TATTTGCGCCTCCTCGACAA 59.752 50.000 4.18 0.00 0.00 3.18
2266 2634 1.021390 ATTTGCGCCTCCTCGACAAG 61.021 55.000 4.18 0.00 31.32 3.16
2268 2636 2.507324 GCGCCTCCTCGACAAGAC 60.507 66.667 0.00 0.00 0.00 3.01
2273 2641 1.945394 GCCTCCTCGACAAGACGTATA 59.055 52.381 0.00 0.00 34.70 1.47
2277 2645 4.496010 CCTCCTCGACAAGACGTATAACAG 60.496 50.000 0.00 0.00 34.70 3.16
2292 2660 6.417044 ACGTATAACAGAATCTATGTGTTCGC 59.583 38.462 0.00 0.00 35.95 4.70
2303 2671 0.101399 TGTGTTCGCGGTTTGCAATT 59.899 45.000 6.13 0.00 46.97 2.32
2308 2676 3.111442 GCGGTTTGCAATTGGGCG 61.111 61.111 7.72 0.00 45.45 6.13
2311 2679 1.861542 CGGTTTGCAATTGGGCGAGA 61.862 55.000 7.72 0.00 36.28 4.04
2312 2680 0.388520 GGTTTGCAATTGGGCGAGAC 60.389 55.000 7.72 0.00 36.28 3.36
2319 2687 1.608590 CAATTGGGCGAGACTGTTTGT 59.391 47.619 0.00 0.00 0.00 2.83
2331 2699 0.866906 CTGTTTGTGCGTGCAACTGG 60.867 55.000 0.00 0.00 31.75 4.00
2344 2712 4.176271 GTGCAACTGGGAATTAATCAAGC 58.824 43.478 0.00 0.00 0.00 4.01
2345 2713 4.082026 GTGCAACTGGGAATTAATCAAGCT 60.082 41.667 0.00 0.00 0.00 3.74
2347 2715 4.400567 GCAACTGGGAATTAATCAAGCTCT 59.599 41.667 0.00 0.00 0.00 4.09
2353 2725 6.666678 TGGGAATTAATCAAGCTCTCATCTT 58.333 36.000 0.00 0.00 0.00 2.40
2354 2726 6.544931 TGGGAATTAATCAAGCTCTCATCTTG 59.455 38.462 0.00 0.00 41.57 3.02
2364 2736 6.484643 TCAAGCTCTCATCTTGGTAATTATGC 59.515 38.462 0.00 0.00 40.82 3.14
2369 2741 5.052693 TCATCTTGGTAATTATGCTGCCT 57.947 39.130 0.00 0.00 0.00 4.75
2370 2742 5.448654 TCATCTTGGTAATTATGCTGCCTT 58.551 37.500 0.00 0.00 0.00 4.35
2372 2744 3.953612 TCTTGGTAATTATGCTGCCTTGG 59.046 43.478 0.00 0.00 0.00 3.61
2373 2745 2.665165 TGGTAATTATGCTGCCTTGGG 58.335 47.619 0.00 0.00 0.00 4.12
2375 2747 2.424234 GGTAATTATGCTGCCTTGGGGA 60.424 50.000 0.00 0.00 33.58 4.81
2377 2749 0.929244 ATTATGCTGCCTTGGGGAGT 59.071 50.000 6.93 0.00 43.30 3.85
2378 2750 1.590591 TTATGCTGCCTTGGGGAGTA 58.409 50.000 6.93 2.82 43.30 2.59
2381 2753 0.621571 TGCTGCCTTGGGGAGTAGAT 60.622 55.000 6.93 0.00 43.30 1.98
2382 2754 0.548510 GCTGCCTTGGGGAGTAGATT 59.451 55.000 6.93 0.00 43.30 2.40
2389 2766 3.777522 CCTTGGGGAGTAGATTGAGAAGT 59.222 47.826 0.00 0.00 33.58 3.01
2395 2772 3.181470 GGAGTAGATTGAGAAGTGAGGGC 60.181 52.174 0.00 0.00 0.00 5.19
2415 2792 2.350498 GCTGCAAACAAATCCATGATGC 59.650 45.455 0.00 0.00 37.27 3.91
2418 2795 3.252400 GCAAACAAATCCATGATGCGAA 58.748 40.909 0.00 0.00 31.16 4.70
2424 2801 4.701651 ACAAATCCATGATGCGAAGAGAAA 59.298 37.500 0.00 0.00 0.00 2.52
2426 2803 5.902613 AATCCATGATGCGAAGAGAAAAA 57.097 34.783 0.00 0.00 0.00 1.94
2427 2804 6.461110 AATCCATGATGCGAAGAGAAAAAT 57.539 33.333 0.00 0.00 0.00 1.82
2428 2805 7.572523 AATCCATGATGCGAAGAGAAAAATA 57.427 32.000 0.00 0.00 0.00 1.40
2462 2853 3.646736 AGGAACTTTATACCAGGTGGC 57.353 47.619 0.76 0.00 33.76 5.01
2463 2854 2.916934 AGGAACTTTATACCAGGTGGCA 59.083 45.455 0.76 0.00 33.76 4.92
2464 2855 3.054361 AGGAACTTTATACCAGGTGGCAG 60.054 47.826 0.76 0.00 33.76 4.85
2487 2878 4.341935 GTGGTGTACACGTTTTTAACCAC 58.658 43.478 19.41 14.09 46.46 4.16
2498 2889 9.384682 ACACGTTTTTAACCACTTTATTTATCG 57.615 29.630 0.00 0.00 0.00 2.92
2516 2907 8.621532 ATTTATCGACACATGCATAACCTTAT 57.378 30.769 0.00 0.00 0.00 1.73
2552 2943 9.826574 TGTAATATGTAATGTAACACTCCTTCC 57.173 33.333 0.00 0.00 30.75 3.46
2554 2945 4.877378 TGTAATGTAACACTCCTTCCGT 57.123 40.909 0.00 0.00 0.00 4.69
2555 2946 5.217978 TGTAATGTAACACTCCTTCCGTT 57.782 39.130 0.00 0.00 0.00 4.44
2556 2947 5.232463 TGTAATGTAACACTCCTTCCGTTC 58.768 41.667 0.00 0.00 0.00 3.95
2558 2949 2.322658 TGTAACACTCCTTCCGTTCCT 58.677 47.619 0.00 0.00 0.00 3.36
2559 2950 3.499338 TGTAACACTCCTTCCGTTCCTA 58.501 45.455 0.00 0.00 0.00 2.94
2560 2951 3.896888 TGTAACACTCCTTCCGTTCCTAA 59.103 43.478 0.00 0.00 0.00 2.69
2562 2953 4.635699 AACACTCCTTCCGTTCCTAAAT 57.364 40.909 0.00 0.00 0.00 1.40
2564 2955 5.952347 ACACTCCTTCCGTTCCTAAATAT 57.048 39.130 0.00 0.00 0.00 1.28
2565 2956 6.309389 ACACTCCTTCCGTTCCTAAATATT 57.691 37.500 0.00 0.00 0.00 1.28
2567 2958 6.598064 ACACTCCTTCCGTTCCTAAATATTTG 59.402 38.462 11.05 1.40 0.00 2.32
2571 2962 7.399634 TCCTTCCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2572 2963 7.886446 TCCTTCCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2573 2964 8.182227 CCTTCCGTTCCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2574 2965 8.857694 TTCCGTTCCTAAATATTTGTCTTTCT 57.142 30.769 11.05 0.00 0.00 2.52
2575 2966 9.947433 TTCCGTTCCTAAATATTTGTCTTTCTA 57.053 29.630 11.05 0.00 0.00 2.10
2576 2967 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2577 2968 9.379791 CCGTTCCTAAATATTTGTCTTTCTAGT 57.620 33.333 11.05 0.00 0.00 2.57
2589 2980 9.956720 ATTTGTCTTTCTAGTGATTTCAACAAG 57.043 29.630 0.00 0.00 0.00 3.16
2590 2981 8.506168 TTGTCTTTCTAGTGATTTCAACAAGT 57.494 30.769 0.00 0.00 0.00 3.16
2591 2982 7.919690 TGTCTTTCTAGTGATTTCAACAAGTG 58.080 34.615 0.00 0.00 0.00 3.16
2592 2983 7.768582 TGTCTTTCTAGTGATTTCAACAAGTGA 59.231 33.333 0.00 0.00 0.00 3.41
2593 2984 8.064814 GTCTTTCTAGTGATTTCAACAAGTGAC 58.935 37.037 0.00 0.00 35.39 3.67
2595 2986 9.261180 CTTTCTAGTGATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
2596 2987 8.589335 TTCTAGTGATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
2597 2988 7.722363 TCTAGTGATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 35.39 2.74
2598 2989 8.367911 TCTAGTGATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 35.39 2.29
2599 2990 9.639601 CTAGTGATTTCAACAAGTGACTACATA 57.360 33.333 0.00 0.00 35.39 2.29
2600 2991 8.311650 AGTGATTTCAACAAGTGACTACATAC 57.688 34.615 0.00 0.00 35.39 2.39
2601 2992 7.116376 AGTGATTTCAACAAGTGACTACATACG 59.884 37.037 0.00 0.00 35.39 3.06
2603 2994 7.654116 TGATTTCAACAAGTGACTACATACGAA 59.346 33.333 0.00 0.00 35.39 3.85
2604 2995 7.956420 TTTCAACAAGTGACTACATACGAAT 57.044 32.000 0.00 0.00 35.39 3.34
2605 2996 6.944557 TCAACAAGTGACTACATACGAATG 57.055 37.500 0.00 0.00 39.17 2.67
2606 2997 6.926826 TTCAACAAGTGACTACATACGAATGT 59.073 34.615 0.00 0.00 41.93 2.71
2607 2998 7.595604 TCAACAAGTGACTACATACGAATGTA 58.404 34.615 0.00 0.00 44.66 2.29
2608 2999 8.248253 TCAACAAGTGACTACATACGAATGTAT 58.752 33.333 0.00 0.00 45.33 2.29
2609 3000 9.511144 CAACAAGTGACTACATACGAATGTATA 57.489 33.333 0.00 0.00 45.33 1.47
2649 3040 8.955061 AATGTAGATTCACTCATTTTGTTTCG 57.045 30.769 0.00 0.00 0.00 3.46
2651 3042 8.596271 TGTAGATTCACTCATTTTGTTTCGTA 57.404 30.769 0.00 0.00 0.00 3.43
2653 3044 9.478019 GTAGATTCACTCATTTTGTTTCGTATG 57.522 33.333 0.00 0.00 0.00 2.39
2654 3045 8.099364 AGATTCACTCATTTTGTTTCGTATGT 57.901 30.769 0.00 0.00 0.00 2.29
2656 3047 9.262472 GATTCACTCATTTTGTTTCGTATGTAC 57.738 33.333 0.00 0.00 0.00 2.90
2657 3048 7.956420 TCACTCATTTTGTTTCGTATGTACT 57.044 32.000 0.00 0.00 0.00 2.73
2658 3049 9.478768 TTCACTCATTTTGTTTCGTATGTACTA 57.521 29.630 0.00 0.00 0.00 1.82
2659 3050 9.135843 TCACTCATTTTGTTTCGTATGTACTAG 57.864 33.333 0.00 0.00 0.00 2.57
2662 3116 9.135843 CTCATTTTGTTTCGTATGTACTAGTCA 57.864 33.333 0.00 0.00 0.00 3.41
2664 3118 8.922676 CATTTTGTTTCGTATGTACTAGTCACT 58.077 33.333 0.00 0.00 0.00 3.41
2666 3120 7.862741 TTGTTTCGTATGTACTAGTCACTTG 57.137 36.000 0.00 0.00 0.00 3.16
2671 3125 7.205737 TCGTATGTACTAGTCACTTGTTGAA 57.794 36.000 0.00 0.00 35.39 2.69
2674 3128 8.373256 CGTATGTACTAGTCACTTGTTGAAATG 58.627 37.037 0.00 0.00 35.39 2.32
2678 3132 9.602568 TGTACTAGTCACTTGTTGAAATGTTTA 57.397 29.630 0.00 0.00 35.39 2.01
2681 3135 9.391006 ACTAGTCACTTGTTGAAATGTTTAGAA 57.609 29.630 0.00 0.00 35.39 2.10
2685 3139 9.010366 GTCACTTGTTGAAATGTTTAGAAAGAC 57.990 33.333 0.00 0.00 35.39 3.01
2687 3141 9.352784 CACTTGTTGAAATGTTTAGAAAGACAA 57.647 29.630 0.00 0.00 0.00 3.18
2705 3159 9.556030 GAAAGACAAATATTTAGAAACGAAGGG 57.444 33.333 0.00 0.00 0.00 3.95
2706 3160 8.857694 AAGACAAATATTTAGAAACGAAGGGA 57.142 30.769 0.00 0.00 0.00 4.20
2707 3161 8.857694 AGACAAATATTTAGAAACGAAGGGAA 57.142 30.769 0.00 0.00 0.00 3.97
2708 3162 9.462606 AGACAAATATTTAGAAACGAAGGGAAT 57.537 29.630 0.00 0.00 0.00 3.01
2729 3785 9.143155 GGGAATAATAGTGTATTGGAATTTGGT 57.857 33.333 0.00 0.00 0.00 3.67
2749 3809 3.697542 GGTTACTCCAGTGTGTTTGGTTT 59.302 43.478 0.00 0.00 37.02 3.27
2752 3812 6.435428 GTTACTCCAGTGTGTTTGGTTTATG 58.565 40.000 0.00 0.00 37.02 1.90
2754 3814 5.686753 ACTCCAGTGTGTTTGGTTTATGTA 58.313 37.500 0.00 0.00 37.02 2.29
2759 3819 6.369340 CCAGTGTGTTTGGTTTATGTACGATA 59.631 38.462 0.00 0.00 0.00 2.92
2762 3822 5.352016 TGTGTTTGGTTTATGTACGATAGCC 59.648 40.000 0.00 0.00 42.67 3.93
2770 3830 6.145696 GGTTTATGTACGATAGCCTGTTGATC 59.854 42.308 0.00 0.00 42.67 2.92
2774 3834 1.414181 ACGATAGCCTGTTGATCTGGG 59.586 52.381 0.00 0.00 42.67 4.45
2776 3836 1.771255 GATAGCCTGTTGATCTGGGGT 59.229 52.381 0.00 0.00 35.96 4.95
2777 3837 0.911769 TAGCCTGTTGATCTGGGGTG 59.088 55.000 0.00 0.00 35.96 4.61
2778 3838 1.136329 AGCCTGTTGATCTGGGGTGT 61.136 55.000 0.00 0.00 35.96 4.16
2780 3840 0.987294 CCTGTTGATCTGGGGTGTCT 59.013 55.000 0.00 0.00 0.00 3.41
2782 3842 2.616510 CCTGTTGATCTGGGGTGTCTTC 60.617 54.545 0.00 0.00 0.00 2.87
2784 3844 2.711009 TGTTGATCTGGGGTGTCTTCTT 59.289 45.455 0.00 0.00 0.00 2.52
2785 3845 3.244561 TGTTGATCTGGGGTGTCTTCTTC 60.245 47.826 0.00 0.00 0.00 2.87
2786 3846 1.909302 TGATCTGGGGTGTCTTCTTCC 59.091 52.381 0.00 0.00 0.00 3.46
2787 3847 1.909302 GATCTGGGGTGTCTTCTTCCA 59.091 52.381 0.00 0.00 0.00 3.53
2788 3848 2.044793 TCTGGGGTGTCTTCTTCCAT 57.955 50.000 0.00 0.00 0.00 3.41
2797 3861 2.143122 GTCTTCTTCCATGTTGTGCGA 58.857 47.619 0.00 0.00 0.00 5.10
2799 3863 1.466167 CTTCTTCCATGTTGTGCGAGG 59.534 52.381 0.00 0.00 0.00 4.63
2800 3864 0.955428 TCTTCCATGTTGTGCGAGGC 60.955 55.000 0.00 0.00 0.00 4.70
2804 3868 1.672030 CATGTTGTGCGAGGCTCCA 60.672 57.895 9.32 5.24 0.00 3.86
2839 3903 3.678921 CATGAATGCATGCCCTTGG 57.321 52.632 16.68 0.00 44.76 3.61
2840 3904 0.828022 CATGAATGCATGCCCTTGGT 59.172 50.000 16.68 0.00 44.76 3.67
2841 3905 0.828022 ATGAATGCATGCCCTTGGTG 59.172 50.000 16.68 0.00 32.31 4.17
2842 3906 1.153509 GAATGCATGCCCTTGGTGC 60.154 57.895 16.68 0.00 39.26 5.01
2843 3907 1.610554 GAATGCATGCCCTTGGTGCT 61.611 55.000 16.68 0.00 39.52 4.40
2844 3908 0.324552 AATGCATGCCCTTGGTGCTA 60.325 50.000 16.68 0.00 39.52 3.49
2845 3909 0.105862 ATGCATGCCCTTGGTGCTAT 60.106 50.000 16.68 0.00 39.52 2.97
2846 3910 0.752743 TGCATGCCCTTGGTGCTATC 60.753 55.000 16.68 0.00 39.52 2.08
2847 3911 0.466922 GCATGCCCTTGGTGCTATCT 60.467 55.000 6.36 0.00 36.02 1.98
2848 3912 1.202806 GCATGCCCTTGGTGCTATCTA 60.203 52.381 6.36 0.00 36.02 1.98
2849 3913 2.553904 GCATGCCCTTGGTGCTATCTAT 60.554 50.000 6.36 0.00 36.02 1.98
2850 3914 3.341823 CATGCCCTTGGTGCTATCTATC 58.658 50.000 0.00 0.00 0.00 2.08
2851 3915 2.407562 TGCCCTTGGTGCTATCTATCA 58.592 47.619 0.00 0.00 0.00 2.15
2852 3916 2.981784 TGCCCTTGGTGCTATCTATCAT 59.018 45.455 0.00 0.00 0.00 2.45
2853 3917 3.395607 TGCCCTTGGTGCTATCTATCATT 59.604 43.478 0.00 0.00 0.00 2.57
2854 3918 3.755378 GCCCTTGGTGCTATCTATCATTG 59.245 47.826 0.00 0.00 0.00 2.82
2855 3919 4.330250 CCCTTGGTGCTATCTATCATTGG 58.670 47.826 0.00 0.00 0.00 3.16
2856 3920 3.755378 CCTTGGTGCTATCTATCATTGGC 59.245 47.826 0.00 0.00 0.00 4.52
2857 3921 3.044235 TGGTGCTATCTATCATTGGCG 57.956 47.619 0.00 0.00 0.00 5.69
2858 3922 2.632512 TGGTGCTATCTATCATTGGCGA 59.367 45.455 0.00 0.00 0.00 5.54
2859 3923 3.070878 TGGTGCTATCTATCATTGGCGAA 59.929 43.478 0.00 0.00 0.00 4.70
2886 3950 2.588877 CGTCGCCAGCCTTATGGG 60.589 66.667 0.00 0.00 40.97 4.00
2898 3962 1.382522 CTTATGGGCGCAGTCATGTT 58.617 50.000 10.83 0.00 0.00 2.71
2901 3965 2.359850 GGGCGCAGTCATGTTGGA 60.360 61.111 10.83 0.00 0.00 3.53
2903 3967 2.482374 GCGCAGTCATGTTGGAGC 59.518 61.111 0.30 0.00 0.00 4.70
2904 3968 2.327343 GCGCAGTCATGTTGGAGCA 61.327 57.895 0.30 0.00 0.00 4.26
2905 3969 1.651240 GCGCAGTCATGTTGGAGCAT 61.651 55.000 0.30 0.00 0.00 3.79
2906 3970 0.376152 CGCAGTCATGTTGGAGCATC 59.624 55.000 0.00 0.00 0.00 3.91
2907 3971 1.747709 GCAGTCATGTTGGAGCATCT 58.252 50.000 0.00 0.00 33.73 2.90
2916 3980 4.766970 GGAGCATCTCCGACCATG 57.233 61.111 0.00 0.00 41.08 3.66
2917 3981 1.826024 GGAGCATCTCCGACCATGT 59.174 57.895 0.00 0.00 41.08 3.21
2918 3982 0.531532 GGAGCATCTCCGACCATGTG 60.532 60.000 0.00 0.00 41.08 3.21
2919 3983 0.176680 GAGCATCTCCGACCATGTGT 59.823 55.000 0.00 0.00 0.00 3.72
2920 3984 0.176680 AGCATCTCCGACCATGTGTC 59.823 55.000 4.71 4.71 40.81 3.67
2933 3997 0.468226 ATGTGTCGGTTGTGACTGGT 59.532 50.000 0.00 0.00 39.64 4.00
2961 4025 3.118847 TCTGACTCATGAGTGATGAAGCC 60.119 47.826 32.50 15.51 42.66 4.35
2966 4030 3.805207 TCATGAGTGATGAAGCCATGAG 58.195 45.455 0.00 0.00 38.19 2.90
2967 4031 3.199289 TCATGAGTGATGAAGCCATGAGT 59.801 43.478 0.00 0.00 38.19 3.41
2968 4032 2.981898 TGAGTGATGAAGCCATGAGTG 58.018 47.619 0.00 0.00 32.09 3.51
2969 4033 2.568509 TGAGTGATGAAGCCATGAGTGA 59.431 45.455 0.00 0.00 32.09 3.41
2970 4034 3.008266 TGAGTGATGAAGCCATGAGTGAA 59.992 43.478 0.00 0.00 32.09 3.18
2972 4036 2.097142 GTGATGAAGCCATGAGTGAAGC 59.903 50.000 0.00 0.00 32.09 3.86
2975 4039 1.093159 GAAGCCATGAGTGAAGCCTG 58.907 55.000 0.00 0.00 0.00 4.85
2976 4040 0.403271 AAGCCATGAGTGAAGCCTGT 59.597 50.000 0.00 0.00 0.00 4.00
2978 4042 1.310933 GCCATGAGTGAAGCCTGTGG 61.311 60.000 0.00 0.00 0.00 4.17
2979 4043 0.325933 CCATGAGTGAAGCCTGTGGA 59.674 55.000 0.00 0.00 0.00 4.02
2980 4044 1.446907 CATGAGTGAAGCCTGTGGAC 58.553 55.000 0.00 0.00 0.00 4.02
2981 4045 0.326264 ATGAGTGAAGCCTGTGGACC 59.674 55.000 0.00 0.00 0.00 4.46
2983 4047 0.108585 GAGTGAAGCCTGTGGACCAA 59.891 55.000 0.00 0.00 0.00 3.67
2989 4059 1.187567 AGCCTGTGGACCAATTTGGC 61.188 55.000 15.49 16.11 42.67 4.52
2992 4062 0.542702 CTGTGGACCAATTTGGCCCT 60.543 55.000 20.01 0.00 41.15 5.19
2996 4066 1.713647 TGGACCAATTTGGCCCTTCTA 59.286 47.619 20.01 4.34 41.15 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.825085 ACAACCGAAATTGGTGTCAAGTAT 59.175 37.500 0.00 0.00 42.89 2.12
13 14 1.202475 GGCAACAACCGAAATTGGTGT 60.202 47.619 11.90 0.00 46.96 4.16
29 30 3.306917 TCTTTCGAGTACATTCGGCAA 57.693 42.857 4.87 0.00 40.83 4.52
34 35 6.234213 CACGACAAATCTTTCGAGTACATTC 58.766 40.000 0.00 0.00 38.63 2.67
51 52 6.092955 AGATAACTGTCTTAACCACGACAA 57.907 37.500 0.00 0.00 39.43 3.18
56 57 7.272948 CGTAGTGAAGATAACTGTCTTAACCAC 59.727 40.741 1.19 0.00 39.47 4.16
65 66 5.259632 AGGTACCGTAGTGAAGATAACTGT 58.740 41.667 6.18 0.00 0.00 3.55
68 69 4.260948 CCGAGGTACCGTAGTGAAGATAAC 60.261 50.000 6.18 0.00 0.00 1.89
69 70 3.879295 CCGAGGTACCGTAGTGAAGATAA 59.121 47.826 6.18 0.00 0.00 1.75
98 99 1.821753 ACAGTGGAGAGATTCACCGAG 59.178 52.381 0.00 0.00 34.67 4.63
101 102 1.546476 ACGACAGTGGAGAGATTCACC 59.454 52.381 0.00 0.00 34.67 4.02
125 145 0.250553 TGTTTACCAGGCGAACCCAG 60.251 55.000 3.68 0.00 36.11 4.45
143 163 4.163839 AGGACTCTCAAAGAAGGGATCATG 59.836 45.833 0.00 0.00 0.00 3.07
237 257 6.935741 TGAGTTACTAGAGAGATCAAGCTC 57.064 41.667 0.00 0.00 35.11 4.09
251 271 4.819105 CAGGTGGTGGAATGAGTTACTA 57.181 45.455 0.00 0.00 0.00 1.82
252 272 3.703001 CAGGTGGTGGAATGAGTTACT 57.297 47.619 0.00 0.00 0.00 2.24
351 371 4.955450 TGTCATATTTCCCAAACCATCAGG 59.045 41.667 0.00 0.00 42.21 3.86
354 374 5.835280 AGGATGTCATATTTCCCAAACCATC 59.165 40.000 0.00 0.00 0.00 3.51
358 378 7.229506 CCTCTAAGGATGTCATATTTCCCAAAC 59.770 40.741 0.00 0.00 37.67 2.93
389 409 9.443323 TCCTTATTCGAGTTGTATGAAAAATCA 57.557 29.630 0.00 0.00 0.00 2.57
406 426 1.659098 GTGCGGTCAACTCCTTATTCG 59.341 52.381 0.00 0.00 0.00 3.34
410 430 0.759959 TTGGTGCGGTCAACTCCTTA 59.240 50.000 0.00 0.00 0.00 2.69
440 460 6.256757 GGTCTAGCACTTCTAAGTTGCATAAG 59.743 42.308 15.01 10.82 37.08 1.73
448 468 4.021016 CACCAAGGTCTAGCACTTCTAAGT 60.021 45.833 0.00 0.00 40.60 2.24
453 473 1.946283 GCCACCAAGGTCTAGCACTTC 60.946 57.143 0.00 0.00 40.61 3.01
468 488 0.108041 CCATGCAAGGAATTGCCACC 60.108 55.000 0.35 0.00 46.82 4.61
507 527 1.014564 GCACACCGTGGTAGCTTCTC 61.015 60.000 3.03 0.00 33.64 2.87
518 538 1.398692 AATTGTTCCAAGCACACCGT 58.601 45.000 0.00 0.00 0.00 4.83
520 540 4.202111 ACTGTAAATTGTTCCAAGCACACC 60.202 41.667 0.00 0.00 0.00 4.16
533 553 7.390440 TCACTCAAACCCAGATACTGTAAATTG 59.610 37.037 0.00 0.00 0.00 2.32
559 579 4.218417 GCAAGTTTCCTGTCATGTGGTTAT 59.782 41.667 0.00 0.00 0.00 1.89
604 624 1.686587 GGTCCAAACTTCCCAAACTGG 59.313 52.381 0.00 0.00 37.25 4.00
636 656 1.858091 GATACATGCCCACTGAGACG 58.142 55.000 0.00 0.00 0.00 4.18
637 657 1.137086 ACGATACATGCCCACTGAGAC 59.863 52.381 0.00 0.00 0.00 3.36
654 674 3.673902 TCAATGCTCCAATTTCAGACGA 58.326 40.909 0.00 0.00 0.00 4.20
673 693 8.102676 TGAGATCCAAATCAGTCAAATTACTCA 58.897 33.333 0.00 0.00 34.07 3.41
687 707 5.126707 AGGAATTGTTGCTGAGATCCAAATC 59.873 40.000 0.00 0.00 0.00 2.17
725 745 4.345257 AGACCTTCAAAGTGCTTCTCTGTA 59.655 41.667 0.00 0.00 0.00 2.74
728 748 3.495806 CCAGACCTTCAAAGTGCTTCTCT 60.496 47.826 0.00 0.00 0.00 3.10
744 764 4.184079 TCGTCTTTAAGCTTACCAGACC 57.816 45.455 25.81 15.44 31.83 3.85
794 814 0.678048 GCCAGTTAGAGCCCACCAAG 60.678 60.000 0.00 0.00 0.00 3.61
860 880 2.442830 GAAGGGAATGCAGGGCCC 60.443 66.667 16.46 16.46 42.37 5.80
890 910 7.575414 ATCAAGTGACTCGATATCTACTTGT 57.425 36.000 23.08 15.87 43.17 3.16
993 1039 4.980339 TGGCATAGCTTCCATATTCTCA 57.020 40.909 0.00 0.00 0.00 3.27
996 1042 3.698040 CCCATGGCATAGCTTCCATATTC 59.302 47.826 6.09 0.00 40.88 1.75
1014 1060 1.595311 TGAGCCACAGTATTCCCCAT 58.405 50.000 0.00 0.00 0.00 4.00
1019 1065 4.377431 CGTTTGAGTTGAGCCACAGTATTC 60.377 45.833 0.00 0.00 0.00 1.75
1074 1120 5.777732 GGAGATGTCCAGTATATCAAGGTCT 59.222 44.000 3.49 0.00 43.31 3.85
1181 1227 0.323178 AGATGTTGGGAAGCTGCCAG 60.323 55.000 14.44 0.00 39.66 4.85
1207 1253 2.549754 AGTCGACCAAACTCTGCAATTG 59.450 45.455 13.01 0.00 0.00 2.32
1239 1285 5.612725 TTTCTCCTTCCAAAGCATTGTTT 57.387 34.783 0.43 0.00 34.60 2.83
1241 1287 5.279657 GGAATTTCTCCTTCCAAAGCATTGT 60.280 40.000 0.43 0.00 41.55 2.71
1344 1390 4.130857 TGACTAATTCGGTGCAGTTTTGA 58.869 39.130 0.00 0.00 0.00 2.69
1356 1402 6.364706 GTGCTAGATCCAAGATGACTAATTCG 59.635 42.308 0.00 0.00 0.00 3.34
1383 1429 2.614057 CAAGCTTCCAGAGAACACGTTT 59.386 45.455 0.00 0.00 0.00 3.60
1387 1433 0.877743 GGCAAGCTTCCAGAGAACAC 59.122 55.000 0.00 0.00 0.00 3.32
1419 1465 4.751767 AAACTCCAAATTTGCCAAGTCA 57.248 36.364 12.92 0.00 0.00 3.41
1441 1487 8.654997 AGAATACATATTGTGGCTCAGTAGAAT 58.345 33.333 0.00 0.00 0.00 2.40
1479 1525 1.804601 TGAGTCTTGTGATGCTGCTG 58.195 50.000 0.00 0.00 0.00 4.41
1482 1528 1.128136 CGCTTGAGTCTTGTGATGCTG 59.872 52.381 0.00 0.00 0.00 4.41
1483 1529 1.436600 CGCTTGAGTCTTGTGATGCT 58.563 50.000 0.00 0.00 0.00 3.79
1484 1530 0.179205 GCGCTTGAGTCTTGTGATGC 60.179 55.000 0.00 0.00 0.00 3.91
1485 1531 0.445436 GGCGCTTGAGTCTTGTGATG 59.555 55.000 7.64 0.00 0.00 3.07
1486 1532 0.322975 AGGCGCTTGAGTCTTGTGAT 59.677 50.000 7.64 0.00 0.00 3.06
1487 1533 0.601046 CAGGCGCTTGAGTCTTGTGA 60.601 55.000 15.39 0.00 0.00 3.58
1488 1534 1.864862 CAGGCGCTTGAGTCTTGTG 59.135 57.895 15.39 0.00 0.00 3.33
1489 1535 1.963338 GCAGGCGCTTGAGTCTTGT 60.963 57.895 25.12 0.00 34.30 3.16
1490 1536 1.509644 TTGCAGGCGCTTGAGTCTTG 61.510 55.000 25.12 0.00 39.64 3.02
1491 1537 0.607489 ATTGCAGGCGCTTGAGTCTT 60.607 50.000 25.12 0.00 39.64 3.01
1492 1538 0.607489 AATTGCAGGCGCTTGAGTCT 60.607 50.000 25.12 0.00 39.64 3.24
1493 1539 0.455633 CAATTGCAGGCGCTTGAGTC 60.456 55.000 25.12 6.17 39.64 3.36
1494 1540 1.174712 ACAATTGCAGGCGCTTGAGT 61.175 50.000 25.12 9.67 39.64 3.41
1495 1541 0.038892 AACAATTGCAGGCGCTTGAG 60.039 50.000 25.12 9.03 39.64 3.02
1496 1542 0.318869 CAACAATTGCAGGCGCTTGA 60.319 50.000 25.12 3.05 39.64 3.02
1499 1545 1.252904 ATCCAACAATTGCAGGCGCT 61.253 50.000 7.64 0.00 39.64 5.92
1504 1550 1.546923 TGCCAGATCCAACAATTGCAG 59.453 47.619 5.05 0.00 0.00 4.41
1516 1562 4.820716 AGATAGATTGTTGCTTGCCAGATC 59.179 41.667 0.00 0.00 0.00 2.75
1542 1910 1.613925 GCGAGATACTGAGGTATGGCA 59.386 52.381 0.00 0.00 38.60 4.92
1544 1912 4.051922 GTTTGCGAGATACTGAGGTATGG 58.948 47.826 0.00 0.00 38.60 2.74
1548 1916 3.963428 AAGTTTGCGAGATACTGAGGT 57.037 42.857 0.00 0.00 0.00 3.85
1553 1921 5.730550 TGGATGTTAAGTTTGCGAGATACT 58.269 37.500 0.00 0.00 0.00 2.12
1562 1930 5.009631 TCAGGGTCATGGATGTTAAGTTTG 58.990 41.667 0.00 0.00 0.00 2.93
1563 1931 5.255397 TCAGGGTCATGGATGTTAAGTTT 57.745 39.130 0.00 0.00 0.00 2.66
1640 2008 1.965414 TGCCAAAGGGAGGTCATAGA 58.035 50.000 0.00 0.00 35.59 1.98
1647 2015 1.928868 ATTGACTTGCCAAAGGGAGG 58.071 50.000 0.00 0.00 37.76 4.30
1670 2038 6.441093 TGATGTTCACTGGCATAATTTCTC 57.559 37.500 0.00 0.00 0.00 2.87
1677 2045 4.009675 GTCCTTTGATGTTCACTGGCATA 58.990 43.478 0.00 0.00 0.00 3.14
1728 2096 2.799412 GAGATCAACGCTCACCATCATC 59.201 50.000 0.00 0.00 32.67 2.92
1762 2130 4.355549 TCTTCCGGGATTCTACCTGTAAA 58.644 43.478 0.00 0.00 34.74 2.01
1786 2154 4.717233 TCAGAGCATCAAGAGAAGAGAC 57.283 45.455 0.00 0.00 37.82 3.36
1843 2211 0.804989 CCAATCTTGCCAGGAACGTC 59.195 55.000 0.00 0.00 0.00 4.34
1845 2213 0.523072 CACCAATCTTGCCAGGAACG 59.477 55.000 0.00 0.00 0.00 3.95
1846 2214 0.244721 GCACCAATCTTGCCAGGAAC 59.755 55.000 0.00 0.00 33.58 3.62
1853 2221 0.459585 CTGCATGGCACCAATCTTGC 60.460 55.000 6.12 6.12 39.41 4.01
1854 2222 0.892755 ACTGCATGGCACCAATCTTG 59.107 50.000 0.00 0.00 33.79 3.02
1875 2243 2.428530 TGTCAGATCGAGTGATTCCAGG 59.571 50.000 3.74 0.00 34.09 4.45
1876 2244 3.790152 TGTCAGATCGAGTGATTCCAG 57.210 47.619 3.74 0.00 34.09 3.86
1881 2249 3.257393 GTTGCTTGTCAGATCGAGTGAT 58.743 45.455 3.74 0.00 37.60 3.06
1898 2266 2.869233 TTCACCAGAAAGCTTGTTGC 57.131 45.000 0.00 0.00 43.29 4.17
1914 2282 3.371034 TGATAGACTGGACGGGATTTCA 58.629 45.455 0.00 0.00 0.00 2.69
1923 2291 8.258708 AGGTATGTTAAGTTTGATAGACTGGAC 58.741 37.037 0.00 0.00 0.00 4.02
1924 2292 8.258007 CAGGTATGTTAAGTTTGATAGACTGGA 58.742 37.037 0.00 0.00 0.00 3.86
1926 2294 9.823647 ATCAGGTATGTTAAGTTTGATAGACTG 57.176 33.333 0.00 0.00 0.00 3.51
1938 2306 8.871125 AGGTTCAGGTATATCAGGTATGTTAAG 58.129 37.037 0.00 0.00 0.00 1.85
1944 2312 5.780793 GGACAGGTTCAGGTATATCAGGTAT 59.219 44.000 0.00 0.00 0.00 2.73
1951 2319 8.232412 TCTGTTATAGGACAGGTTCAGGTATAT 58.768 37.037 5.02 0.00 45.54 0.86
1956 2324 5.878406 ATCTGTTATAGGACAGGTTCAGG 57.122 43.478 5.02 0.00 45.54 3.86
1976 2344 6.597280 GCCTGATGGTATTCTTCCTGATAATC 59.403 42.308 0.00 0.00 35.27 1.75
1977 2345 6.479884 GCCTGATGGTATTCTTCCTGATAAT 58.520 40.000 0.00 0.00 35.27 1.28
1978 2346 5.221925 GGCCTGATGGTATTCTTCCTGATAA 60.222 44.000 0.00 0.00 35.27 1.75
1983 2351 2.173569 GTGGCCTGATGGTATTCTTCCT 59.826 50.000 3.32 0.00 35.27 3.36
2016 2384 3.054361 GGATGGGTTAGTCCACATTGAGT 60.054 47.826 0.00 0.00 39.97 3.41
2029 2397 3.057104 CGATGTACATAGCGGATGGGTTA 60.057 47.826 8.71 0.00 40.18 2.85
2031 2399 1.272490 CGATGTACATAGCGGATGGGT 59.728 52.381 8.71 0.00 40.18 4.51
2033 2401 1.996292 CCGATGTACATAGCGGATGG 58.004 55.000 24.54 8.68 46.29 3.51
2034 2402 1.336795 TGCCGATGTACATAGCGGATG 60.337 52.381 30.06 11.13 46.29 3.51
2039 2407 2.285220 CACTGTTGCCGATGTACATAGC 59.715 50.000 18.92 18.92 0.00 2.97
2074 2442 1.885887 TGGCATTTCTTTTCGAGTGGG 59.114 47.619 0.00 0.00 0.00 4.61
2080 2448 6.768029 TCATTTCTTTGGCATTTCTTTTCG 57.232 33.333 0.00 0.00 0.00 3.46
2086 2454 8.598075 GTTGATGTATCATTTCTTTGGCATTTC 58.402 33.333 0.00 0.00 36.56 2.17
2097 2465 7.072177 TCACCTTTCGTTGATGTATCATTTC 57.928 36.000 0.00 0.00 36.56 2.17
2113 2481 5.998363 ACTACTTGTTCCAAGATCACCTTTC 59.002 40.000 10.73 0.00 31.42 2.62
2114 2482 5.765182 CACTACTTGTTCCAAGATCACCTTT 59.235 40.000 10.73 0.00 31.42 3.11
2120 2488 5.784177 TGACTCACTACTTGTTCCAAGATC 58.216 41.667 10.73 0.00 0.00 2.75
2121 2489 5.279708 CCTGACTCACTACTTGTTCCAAGAT 60.280 44.000 10.73 0.00 0.00 2.40
2122 2490 4.039245 CCTGACTCACTACTTGTTCCAAGA 59.961 45.833 10.73 0.00 0.00 3.02
2123 2491 4.202264 ACCTGACTCACTACTTGTTCCAAG 60.202 45.833 2.54 2.54 0.00 3.61
2124 2492 3.709653 ACCTGACTCACTACTTGTTCCAA 59.290 43.478 0.00 0.00 0.00 3.53
2126 2494 3.321111 TCACCTGACTCACTACTTGTTCC 59.679 47.826 0.00 0.00 0.00 3.62
2127 2495 4.551388 CTCACCTGACTCACTACTTGTTC 58.449 47.826 0.00 0.00 0.00 3.18
2129 2497 2.297597 GCTCACCTGACTCACTACTTGT 59.702 50.000 0.00 0.00 0.00 3.16
2131 2499 2.883026 AGCTCACCTGACTCACTACTT 58.117 47.619 0.00 0.00 0.00 2.24
2132 2500 2.595750 AGCTCACCTGACTCACTACT 57.404 50.000 0.00 0.00 0.00 2.57
2133 2501 4.785511 TTTAGCTCACCTGACTCACTAC 57.214 45.455 0.00 0.00 0.00 2.73
2134 2502 7.661536 ATAATTTAGCTCACCTGACTCACTA 57.338 36.000 0.00 0.00 0.00 2.74
2135 2503 4.899352 AATTTAGCTCACCTGACTCACT 57.101 40.909 0.00 0.00 0.00 3.41
2136 2504 7.982354 AGTAATAATTTAGCTCACCTGACTCAC 59.018 37.037 0.00 0.00 0.00 3.51
2137 2505 7.981789 CAGTAATAATTTAGCTCACCTGACTCA 59.018 37.037 0.00 0.00 0.00 3.41
2138 2506 7.439655 CCAGTAATAATTTAGCTCACCTGACTC 59.560 40.741 0.00 0.00 0.00 3.36
2139 2507 7.092846 ACCAGTAATAATTTAGCTCACCTGACT 60.093 37.037 0.00 0.00 0.00 3.41
2140 2508 7.048512 ACCAGTAATAATTTAGCTCACCTGAC 58.951 38.462 0.00 0.00 0.00 3.51
2141 2509 7.195374 ACCAGTAATAATTTAGCTCACCTGA 57.805 36.000 0.00 0.00 0.00 3.86
2142 2510 7.865706 AACCAGTAATAATTTAGCTCACCTG 57.134 36.000 0.00 0.00 0.00 4.00
2143 2511 7.339466 CCAAACCAGTAATAATTTAGCTCACCT 59.661 37.037 0.00 0.00 0.00 4.00
2161 2529 2.352323 GCCCACGATAAAACCAAACCAG 60.352 50.000 0.00 0.00 0.00 4.00
2170 2538 4.196193 CCACTATCAAGCCCACGATAAAA 58.804 43.478 0.00 0.00 0.00 1.52
2216 2584 0.244450 CATGCCCGCTTGAACAACAT 59.756 50.000 0.00 0.00 0.00 2.71
2251 2619 2.507324 GTCTTGTCGAGGAGGCGC 60.507 66.667 0.00 0.00 0.00 6.53
2265 2633 7.856398 CGAACACATAGATTCTGTTATACGTCT 59.144 37.037 0.00 0.00 0.00 4.18
2266 2634 7.357368 GCGAACACATAGATTCTGTTATACGTC 60.357 40.741 0.00 0.00 0.00 4.34
2268 2636 6.397584 CGCGAACACATAGATTCTGTTATACG 60.398 42.308 0.00 0.00 0.00 3.06
2273 2641 2.930040 CCGCGAACACATAGATTCTGTT 59.070 45.455 8.23 0.00 0.00 3.16
2277 2645 3.670203 CAAACCGCGAACACATAGATTC 58.330 45.455 8.23 0.00 0.00 2.52
2292 2660 1.444212 CTCGCCCAATTGCAAACCG 60.444 57.895 1.71 2.24 0.00 4.44
2303 2671 1.891919 GCACAAACAGTCTCGCCCA 60.892 57.895 0.00 0.00 0.00 5.36
2308 2676 0.376852 TTGCACGCACAAACAGTCTC 59.623 50.000 0.00 0.00 0.00 3.36
2311 2679 0.179166 CAGTTGCACGCACAAACAGT 60.179 50.000 0.00 0.00 0.00 3.55
2312 2680 0.866906 CCAGTTGCACGCACAAACAG 60.867 55.000 0.00 0.00 0.00 3.16
2319 2687 1.610363 TTAATTCCCAGTTGCACGCA 58.390 45.000 0.00 0.00 0.00 5.24
2331 2699 6.545298 ACCAAGATGAGAGCTTGATTAATTCC 59.455 38.462 3.19 0.00 44.16 3.01
2344 2712 5.180868 GGCAGCATAATTACCAAGATGAGAG 59.819 44.000 0.00 0.00 0.00 3.20
2345 2713 5.065914 GGCAGCATAATTACCAAGATGAGA 58.934 41.667 0.00 0.00 0.00 3.27
2347 2715 5.052693 AGGCAGCATAATTACCAAGATGA 57.947 39.130 0.00 0.00 0.00 2.92
2353 2725 2.665165 CCCAAGGCAGCATAATTACCA 58.335 47.619 0.00 0.00 0.00 3.25
2354 2726 1.963515 CCCCAAGGCAGCATAATTACC 59.036 52.381 0.00 0.00 0.00 2.85
2361 2733 0.621571 TCTACTCCCCAAGGCAGCAT 60.622 55.000 0.00 0.00 0.00 3.79
2364 2736 1.839994 TCAATCTACTCCCCAAGGCAG 59.160 52.381 0.00 0.00 0.00 4.85
2369 2741 4.425772 TCACTTCTCAATCTACTCCCCAA 58.574 43.478 0.00 0.00 0.00 4.12
2370 2742 4.026744 CTCACTTCTCAATCTACTCCCCA 58.973 47.826 0.00 0.00 0.00 4.96
2372 2744 3.386402 CCCTCACTTCTCAATCTACTCCC 59.614 52.174 0.00 0.00 0.00 4.30
2373 2745 3.181470 GCCCTCACTTCTCAATCTACTCC 60.181 52.174 0.00 0.00 0.00 3.85
2375 2747 3.450457 CAGCCCTCACTTCTCAATCTACT 59.550 47.826 0.00 0.00 0.00 2.57
2377 2749 2.169352 GCAGCCCTCACTTCTCAATCTA 59.831 50.000 0.00 0.00 0.00 1.98
2378 2750 1.065564 GCAGCCCTCACTTCTCAATCT 60.066 52.381 0.00 0.00 0.00 2.40
2381 2753 0.473755 TTGCAGCCCTCACTTCTCAA 59.526 50.000 0.00 0.00 0.00 3.02
2382 2754 0.473755 TTTGCAGCCCTCACTTCTCA 59.526 50.000 0.00 0.00 0.00 3.27
2389 2766 0.968405 GGATTTGTTTGCAGCCCTCA 59.032 50.000 0.00 0.00 0.00 3.86
2395 2772 2.601314 CGCATCATGGATTTGTTTGCAG 59.399 45.455 0.00 0.00 31.61 4.41
2436 2813 5.350640 CACCTGGTATAAAGTTCCTTCGTTC 59.649 44.000 0.00 0.00 0.00 3.95
2437 2814 5.243207 CACCTGGTATAAAGTTCCTTCGTT 58.757 41.667 0.00 0.00 0.00 3.85
2438 2815 4.323257 CCACCTGGTATAAAGTTCCTTCGT 60.323 45.833 0.00 0.00 0.00 3.85
2439 2816 4.189231 CCACCTGGTATAAAGTTCCTTCG 58.811 47.826 0.00 0.00 0.00 3.79
2446 2837 2.026262 CACCTGCCACCTGGTATAAAGT 60.026 50.000 0.00 0.00 40.86 2.66
2450 2841 0.252974 ACCACCTGCCACCTGGTATA 60.253 55.000 0.00 0.00 40.86 1.47
2457 2848 1.599797 GTGTACACCACCTGCCACC 60.600 63.158 15.42 0.00 38.18 4.61
2458 2849 1.959226 CGTGTACACCACCTGCCAC 60.959 63.158 20.11 0.00 41.26 5.01
2459 2850 1.973816 AACGTGTACACCACCTGCCA 61.974 55.000 20.11 0.00 41.26 4.92
2460 2851 0.816421 AAACGTGTACACCACCTGCC 60.816 55.000 20.11 0.00 41.26 4.85
2461 2852 1.018910 AAAACGTGTACACCACCTGC 58.981 50.000 20.11 0.00 41.26 4.85
2462 2853 4.496175 GGTTAAAAACGTGTACACCACCTG 60.496 45.833 20.11 8.26 41.26 4.00
2463 2854 3.627123 GGTTAAAAACGTGTACACCACCT 59.373 43.478 20.11 4.22 41.26 4.00
2464 2855 3.376546 TGGTTAAAAACGTGTACACCACC 59.623 43.478 20.11 13.73 41.26 4.61
2475 2866 9.596677 TGTCGATAAATAAAGTGGTTAAAAACG 57.403 29.630 0.00 0.00 0.00 3.60
2480 2871 8.178964 GCATGTGTCGATAAATAAAGTGGTTAA 58.821 33.333 0.00 0.00 0.00 2.01
2487 2878 8.559536 AGGTTATGCATGTGTCGATAAATAAAG 58.440 33.333 10.16 0.00 0.00 1.85
2495 2886 5.929697 CATAAGGTTATGCATGTGTCGAT 57.070 39.130 10.16 0.00 34.70 3.59
2526 2917 9.826574 GGAAGGAGTGTTACATTACATATTACA 57.173 33.333 0.00 0.00 0.00 2.41
2527 2918 8.975439 CGGAAGGAGTGTTACATTACATATTAC 58.025 37.037 0.00 0.00 0.00 1.89
2528 2919 8.698210 ACGGAAGGAGTGTTACATTACATATTA 58.302 33.333 0.00 0.00 0.00 0.98
2529 2920 7.562135 ACGGAAGGAGTGTTACATTACATATT 58.438 34.615 0.00 0.00 0.00 1.28
2530 2921 7.120923 ACGGAAGGAGTGTTACATTACATAT 57.879 36.000 0.00 0.00 0.00 1.78
2531 2922 6.534475 ACGGAAGGAGTGTTACATTACATA 57.466 37.500 0.00 0.00 0.00 2.29
2532 2923 5.416271 ACGGAAGGAGTGTTACATTACAT 57.584 39.130 0.00 0.00 0.00 2.29
2533 2924 4.877378 ACGGAAGGAGTGTTACATTACA 57.123 40.909 0.00 0.00 0.00 2.41
2534 2925 4.628766 GGAACGGAAGGAGTGTTACATTAC 59.371 45.833 0.00 0.00 0.00 1.89
2535 2926 4.529377 AGGAACGGAAGGAGTGTTACATTA 59.471 41.667 0.00 0.00 0.00 1.90
2536 2927 3.326880 AGGAACGGAAGGAGTGTTACATT 59.673 43.478 0.00 0.00 0.00 2.71
2537 2928 2.904434 AGGAACGGAAGGAGTGTTACAT 59.096 45.455 0.00 0.00 0.00 2.29
2541 2932 4.635699 ATTTAGGAACGGAAGGAGTGTT 57.364 40.909 0.00 0.00 0.00 3.32
2542 2933 5.952347 ATATTTAGGAACGGAAGGAGTGT 57.048 39.130 0.00 0.00 0.00 3.55
2545 2936 7.048512 AGACAAATATTTAGGAACGGAAGGAG 58.951 38.462 0.00 0.00 0.00 3.69
2546 2937 6.954232 AGACAAATATTTAGGAACGGAAGGA 58.046 36.000 0.00 0.00 0.00 3.36
2547 2938 7.625828 AAGACAAATATTTAGGAACGGAAGG 57.374 36.000 0.00 0.00 0.00 3.46
2548 2939 8.947115 AGAAAGACAAATATTTAGGAACGGAAG 58.053 33.333 0.00 0.00 0.00 3.46
2549 2940 8.857694 AGAAAGACAAATATTTAGGAACGGAA 57.142 30.769 0.00 0.00 0.00 4.30
2550 2941 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2551 2942 9.379791 ACTAGAAAGACAAATATTTAGGAACGG 57.620 33.333 0.00 0.00 0.00 4.44
2564 2955 8.956426 ACTTGTTGAAATCACTAGAAAGACAAA 58.044 29.630 0.00 0.00 0.00 2.83
2565 2956 8.397906 CACTTGTTGAAATCACTAGAAAGACAA 58.602 33.333 0.00 0.00 0.00 3.18
2567 2958 8.064814 GTCACTTGTTGAAATCACTAGAAAGAC 58.935 37.037 0.00 0.00 35.39 3.01
2571 2962 8.201464 TGTAGTCACTTGTTGAAATCACTAGAA 58.799 33.333 0.00 0.00 35.39 2.10
2572 2963 7.722363 TGTAGTCACTTGTTGAAATCACTAGA 58.278 34.615 0.00 0.00 35.39 2.43
2573 2964 7.946655 TGTAGTCACTTGTTGAAATCACTAG 57.053 36.000 0.00 0.00 35.39 2.57
2574 2965 9.419297 GTATGTAGTCACTTGTTGAAATCACTA 57.581 33.333 0.00 0.00 35.39 2.74
2575 2966 7.116376 CGTATGTAGTCACTTGTTGAAATCACT 59.884 37.037 0.00 0.00 35.39 3.41
2576 2967 7.115805 TCGTATGTAGTCACTTGTTGAAATCAC 59.884 37.037 0.00 0.00 35.39 3.06
2577 2968 7.149307 TCGTATGTAGTCACTTGTTGAAATCA 58.851 34.615 0.00 0.00 35.39 2.57
2578 2969 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2579 2970 7.956420 TTCGTATGTAGTCACTTGTTGAAAT 57.044 32.000 0.00 0.00 35.39 2.17
2580 2971 7.439955 ACATTCGTATGTAGTCACTTGTTGAAA 59.560 33.333 5.81 0.00 43.12 2.69
2581 2972 6.926826 ACATTCGTATGTAGTCACTTGTTGAA 59.073 34.615 5.81 0.00 43.12 2.69
2582 2973 6.452242 ACATTCGTATGTAGTCACTTGTTGA 58.548 36.000 5.81 0.00 43.12 3.18
2583 2974 6.706055 ACATTCGTATGTAGTCACTTGTTG 57.294 37.500 5.81 0.00 43.12 3.33
2625 3016 8.099364 ACGAAACAAAATGAGTGAATCTACAT 57.901 30.769 0.00 0.00 0.00 2.29
2627 3018 9.478019 CATACGAAACAAAATGAGTGAATCTAC 57.522 33.333 0.00 0.00 0.00 2.59
2629 3020 8.099364 ACATACGAAACAAAATGAGTGAATCT 57.901 30.769 0.00 0.00 0.00 2.40
2630 3021 9.262472 GTACATACGAAACAAAATGAGTGAATC 57.738 33.333 0.00 0.00 0.00 2.52
2631 3022 8.999431 AGTACATACGAAACAAAATGAGTGAAT 58.001 29.630 0.00 0.00 0.00 2.57
2634 3025 8.922676 ACTAGTACATACGAAACAAAATGAGTG 58.077 33.333 0.00 0.00 0.00 3.51
2635 3026 9.136952 GACTAGTACATACGAAACAAAATGAGT 57.863 33.333 0.00 0.00 0.00 3.41
2636 3027 9.135843 TGACTAGTACATACGAAACAAAATGAG 57.864 33.333 0.00 0.00 0.00 2.90
2637 3028 8.918658 GTGACTAGTACATACGAAACAAAATGA 58.081 33.333 0.00 0.00 0.00 2.57
2638 3029 8.922676 AGTGACTAGTACATACGAAACAAAATG 58.077 33.333 0.00 0.00 0.00 2.32
2640 3031 8.757789 CAAGTGACTAGTACATACGAAACAAAA 58.242 33.333 0.00 0.00 0.00 2.44
2642 3033 7.428020 ACAAGTGACTAGTACATACGAAACAA 58.572 34.615 0.00 0.00 0.00 2.83
2644 3035 7.592533 TCAACAAGTGACTAGTACATACGAAAC 59.407 37.037 0.00 0.00 0.00 2.78
2647 3038 6.806388 TCAACAAGTGACTAGTACATACGA 57.194 37.500 0.00 0.00 0.00 3.43
2648 3039 7.862741 TTTCAACAAGTGACTAGTACATACG 57.137 36.000 0.00 0.00 35.39 3.06
2649 3040 9.204570 ACATTTCAACAAGTGACTAGTACATAC 57.795 33.333 0.00 0.00 35.39 2.39
2651 3042 8.677148 AACATTTCAACAAGTGACTAGTACAT 57.323 30.769 0.00 0.00 35.39 2.29
2658 3049 8.956426 TCTTTCTAAACATTTCAACAAGTGACT 58.044 29.630 0.00 0.00 35.39 3.41
2659 3050 9.010366 GTCTTTCTAAACATTTCAACAAGTGAC 57.990 33.333 0.00 0.00 35.39 3.67
2662 3116 9.921637 TTTGTCTTTCTAAACATTTCAACAAGT 57.078 25.926 0.00 0.00 0.00 3.16
2681 3135 8.857694 TCCCTTCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
2682 3136 8.857694 TTCCCTTCGTTTCTAAATATTTGTCT 57.142 30.769 11.05 0.00 0.00 3.41
2697 3151 7.798071 TCCAATACACTATTATTCCCTTCGTT 58.202 34.615 0.00 0.00 0.00 3.85
2698 3152 7.369551 TCCAATACACTATTATTCCCTTCGT 57.630 36.000 0.00 0.00 0.00 3.85
2699 3153 8.848474 ATTCCAATACACTATTATTCCCTTCG 57.152 34.615 0.00 0.00 0.00 3.79
2709 3163 9.185680 GGAGTAACCAAATTCCAATACACTATT 57.814 33.333 0.00 0.00 38.79 1.73
2710 3164 8.333235 TGGAGTAACCAAATTCCAATACACTAT 58.667 33.333 0.00 0.00 46.75 2.12
2711 3165 7.691213 TGGAGTAACCAAATTCCAATACACTA 58.309 34.615 0.00 0.00 46.75 2.74
2712 3166 6.548321 TGGAGTAACCAAATTCCAATACACT 58.452 36.000 0.00 0.00 46.75 3.55
2713 3167 6.827586 TGGAGTAACCAAATTCCAATACAC 57.172 37.500 0.00 0.00 46.75 2.90
2729 3785 6.123651 ACATAAACCAAACACACTGGAGTAA 58.876 36.000 0.00 0.00 37.40 2.24
2749 3809 5.048013 CCAGATCAACAGGCTATCGTACATA 60.048 44.000 0.00 0.00 0.00 2.29
2752 3812 3.553096 CCCAGATCAACAGGCTATCGTAC 60.553 52.174 0.00 0.00 0.00 3.67
2754 3814 1.414181 CCCAGATCAACAGGCTATCGT 59.586 52.381 0.00 0.00 0.00 3.73
2759 3819 1.136329 ACACCCCAGATCAACAGGCT 61.136 55.000 0.00 0.00 0.00 4.58
2762 3822 2.304180 AGAAGACACCCCAGATCAACAG 59.696 50.000 0.00 0.00 0.00 3.16
2770 3830 1.352352 ACATGGAAGAAGACACCCCAG 59.648 52.381 0.00 0.00 0.00 4.45
2774 3834 2.030805 GCACAACATGGAAGAAGACACC 60.031 50.000 0.00 0.00 0.00 4.16
2776 3836 1.872952 CGCACAACATGGAAGAAGACA 59.127 47.619 0.00 0.00 0.00 3.41
2777 3837 2.143122 TCGCACAACATGGAAGAAGAC 58.857 47.619 0.00 0.00 0.00 3.01
2778 3838 2.416747 CTCGCACAACATGGAAGAAGA 58.583 47.619 0.00 0.00 0.00 2.87
2780 3840 1.522668 CCTCGCACAACATGGAAGAA 58.477 50.000 0.00 0.00 0.00 2.52
2782 3842 0.957395 AGCCTCGCACAACATGGAAG 60.957 55.000 0.00 0.00 0.00 3.46
2784 3844 1.375908 GAGCCTCGCACAACATGGA 60.376 57.895 0.00 0.00 0.00 3.41
2785 3845 2.401766 GGAGCCTCGCACAACATGG 61.402 63.158 0.00 0.00 0.00 3.66
2786 3846 1.028330 ATGGAGCCTCGCACAACATG 61.028 55.000 0.00 0.00 0.00 3.21
2787 3847 1.028330 CATGGAGCCTCGCACAACAT 61.028 55.000 0.00 0.00 0.00 2.71
2788 3848 1.672030 CATGGAGCCTCGCACAACA 60.672 57.895 0.00 0.00 0.00 3.33
2797 3861 4.567195 TGACCTGTCATGGAGCCT 57.433 55.556 0.00 0.00 34.14 4.58
2825 3889 0.324552 TAGCACCAAGGGCATGCATT 60.325 50.000 21.36 10.89 41.97 3.56
2826 3890 0.105862 ATAGCACCAAGGGCATGCAT 60.106 50.000 21.36 4.13 41.97 3.96
2827 3891 0.752743 GATAGCACCAAGGGCATGCA 60.753 55.000 21.36 0.00 41.97 3.96
2828 3892 0.466922 AGATAGCACCAAGGGCATGC 60.467 55.000 9.90 9.90 39.74 4.06
2829 3893 2.936919 TAGATAGCACCAAGGGCATG 57.063 50.000 0.00 0.00 0.00 4.06
2830 3894 2.981784 TGATAGATAGCACCAAGGGCAT 59.018 45.455 0.00 0.00 0.00 4.40
2831 3895 2.407562 TGATAGATAGCACCAAGGGCA 58.592 47.619 0.00 0.00 0.00 5.36
2832 3896 3.710209 ATGATAGATAGCACCAAGGGC 57.290 47.619 0.00 0.00 0.00 5.19
2833 3897 4.330250 CCAATGATAGATAGCACCAAGGG 58.670 47.826 0.00 0.00 0.00 3.95
2834 3898 3.755378 GCCAATGATAGATAGCACCAAGG 59.245 47.826 0.00 0.00 0.00 3.61
2835 3899 3.434641 CGCCAATGATAGATAGCACCAAG 59.565 47.826 0.00 0.00 0.00 3.61
2836 3900 3.070878 TCGCCAATGATAGATAGCACCAA 59.929 43.478 0.00 0.00 0.00 3.67
2837 3901 2.632512 TCGCCAATGATAGATAGCACCA 59.367 45.455 0.00 0.00 0.00 4.17
2838 3902 3.319137 TCGCCAATGATAGATAGCACC 57.681 47.619 0.00 0.00 0.00 5.01
2839 3903 4.093998 CCATTCGCCAATGATAGATAGCAC 59.906 45.833 5.53 0.00 41.97 4.40
2840 3904 4.256110 CCATTCGCCAATGATAGATAGCA 58.744 43.478 5.53 0.00 41.97 3.49
2841 3905 3.064545 GCCATTCGCCAATGATAGATAGC 59.935 47.826 5.53 0.00 41.97 2.97
2842 3906 4.256110 TGCCATTCGCCAATGATAGATAG 58.744 43.478 5.53 0.00 41.97 2.08
2843 3907 4.284829 TGCCATTCGCCAATGATAGATA 57.715 40.909 5.53 0.00 41.97 1.98
2844 3908 3.144657 TGCCATTCGCCAATGATAGAT 57.855 42.857 5.53 0.00 41.97 1.98
2845 3909 2.636647 TGCCATTCGCCAATGATAGA 57.363 45.000 5.53 0.00 41.97 1.98
2846 3910 3.571571 CATTGCCATTCGCCAATGATAG 58.428 45.455 5.53 0.00 41.97 2.08
2847 3911 2.296752 CCATTGCCATTCGCCAATGATA 59.703 45.455 5.53 0.00 41.97 2.15
2848 3912 1.069513 CCATTGCCATTCGCCAATGAT 59.930 47.619 5.53 0.00 41.97 2.45
2849 3913 0.460722 CCATTGCCATTCGCCAATGA 59.539 50.000 5.53 0.00 41.97 2.57
2850 3914 1.155424 GCCATTGCCATTCGCCAATG 61.155 55.000 0.00 0.00 39.45 2.82
2851 3915 1.144496 GCCATTGCCATTCGCCAAT 59.856 52.632 0.00 0.00 36.24 3.16
2852 3916 2.578128 GCCATTGCCATTCGCCAA 59.422 55.556 0.00 0.00 36.24 4.52
2853 3917 3.824469 CGCCATTGCCATTCGCCA 61.824 61.111 0.00 0.00 36.24 5.69
2854 3918 3.756413 GACGCCATTGCCATTCGCC 62.756 63.158 0.00 0.00 36.24 5.54
2855 3919 2.278142 GACGCCATTGCCATTCGC 60.278 61.111 0.00 0.00 38.31 4.70
2856 3920 2.023181 CGACGCCATTGCCATTCG 59.977 61.111 0.00 0.00 0.00 3.34
2857 3921 2.278142 GCGACGCCATTGCCATTC 60.278 61.111 9.14 0.00 0.00 2.67
2868 3932 3.272334 CCATAAGGCTGGCGACGC 61.272 66.667 12.43 12.43 0.00 5.19
2886 3950 1.651240 ATGCTCCAACATGACTGCGC 61.651 55.000 0.00 0.00 0.00 6.09
2901 3965 0.176680 GACACATGGTCGGAGATGCT 59.823 55.000 0.00 0.00 40.67 3.79
2910 3974 0.865769 GTCACAACCGACACATGGTC 59.134 55.000 0.00 0.79 39.29 4.02
2911 3975 0.468226 AGTCACAACCGACACATGGT 59.532 50.000 0.00 0.00 42.98 3.55
2912 3976 0.867746 CAGTCACAACCGACACATGG 59.132 55.000 0.00 0.00 38.43 3.66
2913 3977 0.867746 CCAGTCACAACCGACACATG 59.132 55.000 0.00 0.00 38.43 3.21
2914 3978 0.468226 ACCAGTCACAACCGACACAT 59.532 50.000 0.00 0.00 38.43 3.21
2915 3979 0.461163 CACCAGTCACAACCGACACA 60.461 55.000 0.00 0.00 38.43 3.72
2916 3980 0.179094 TCACCAGTCACAACCGACAC 60.179 55.000 0.00 0.00 38.43 3.67
2917 3981 0.756294 ATCACCAGTCACAACCGACA 59.244 50.000 0.00 0.00 38.43 4.35
2918 3982 1.531149 CAATCACCAGTCACAACCGAC 59.469 52.381 0.00 0.00 36.08 4.79
2919 3983 1.140052 ACAATCACCAGTCACAACCGA 59.860 47.619 0.00 0.00 0.00 4.69
2920 3984 1.531149 GACAATCACCAGTCACAACCG 59.469 52.381 0.00 0.00 34.93 4.44
2921 3985 2.549754 CAGACAATCACCAGTCACAACC 59.450 50.000 0.00 0.00 37.23 3.77
2922 3986 3.248602 GTCAGACAATCACCAGTCACAAC 59.751 47.826 0.00 0.00 37.23 3.32
2923 3987 3.134623 AGTCAGACAATCACCAGTCACAA 59.865 43.478 2.66 0.00 37.23 3.33
2924 3988 2.700371 AGTCAGACAATCACCAGTCACA 59.300 45.455 2.66 0.00 37.23 3.58
2925 3989 3.243873 TGAGTCAGACAATCACCAGTCAC 60.244 47.826 2.66 0.00 37.23 3.67
2926 3990 2.965147 TGAGTCAGACAATCACCAGTCA 59.035 45.455 2.66 0.00 37.23 3.41
2927 3991 3.667497 TGAGTCAGACAATCACCAGTC 57.333 47.619 2.66 0.00 35.02 3.51
2933 3997 5.186409 TCATCACTCATGAGTCAGACAATCA 59.814 40.000 25.58 0.00 40.20 2.57
2961 4025 1.446907 GTCCACAGGCTTCACTCATG 58.553 55.000 0.00 0.00 0.00 3.07
2966 4030 1.620822 AATTGGTCCACAGGCTTCAC 58.379 50.000 0.00 0.00 0.00 3.18
2967 4031 1.962807 CAAATTGGTCCACAGGCTTCA 59.037 47.619 0.00 0.00 0.00 3.02
2968 4032 1.273327 CCAAATTGGTCCACAGGCTTC 59.727 52.381 3.34 0.00 31.35 3.86
2969 4033 1.341080 CCAAATTGGTCCACAGGCTT 58.659 50.000 3.34 0.00 31.35 4.35
2970 4034 1.187567 GCCAAATTGGTCCACAGGCT 61.188 55.000 14.17 0.00 40.46 4.58
2972 4036 1.974543 GGCCAAATTGGTCCACAGG 59.025 57.895 14.17 0.00 40.46 4.00
2978 4042 5.187772 AGAAAATAGAAGGGCCAAATTGGTC 59.812 40.000 14.17 11.44 42.67 4.02
2979 4043 5.093677 AGAAAATAGAAGGGCCAAATTGGT 58.906 37.500 14.17 0.00 40.46 3.67
2980 4044 5.682234 AGAAAATAGAAGGGCCAAATTGG 57.318 39.130 7.84 7.84 41.55 3.16
2981 4045 5.352293 GCAAGAAAATAGAAGGGCCAAATTG 59.648 40.000 6.18 0.00 0.00 2.32
2983 4047 4.531732 TGCAAGAAAATAGAAGGGCCAAAT 59.468 37.500 6.18 0.00 0.00 2.32
2989 4059 4.872124 GGCAAATGCAAGAAAATAGAAGGG 59.128 41.667 7.80 0.00 44.36 3.95
2992 4062 5.481105 CCAGGCAAATGCAAGAAAATAGAA 58.519 37.500 7.80 0.00 44.36 2.10
2996 4066 2.876892 GCCCAGGCAAATGCAAGAAAAT 60.877 45.455 3.12 0.00 44.36 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.