Multiple sequence alignment - TraesCS1D01G374800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G374800 chr1D 100.000 2798 0 0 1 2798 452206853 452209650 0.000000e+00 5168.0
1 TraesCS1D01G374800 chr1D 97.021 235 5 1 76 310 452193868 452194100 7.260000e-106 394.0
2 TraesCS1D01G374800 chr1D 92.593 216 16 0 2583 2798 429029356 429029571 7.530000e-81 311.0
3 TraesCS1D01G374800 chr1D 97.500 80 2 0 1 80 208825765 208825844 1.350000e-28 137.0
4 TraesCS1D01G374800 chr1D 97.403 77 2 0 1 77 318666738 318666814 6.290000e-27 132.0
5 TraesCS1D01G374800 chr1B 94.525 895 31 4 1919 2798 622077036 622077927 0.000000e+00 1365.0
6 TraesCS1D01G374800 chr1B 91.103 1034 51 20 893 1921 622070565 622071562 0.000000e+00 1362.0
7 TraesCS1D01G374800 chr1B 79.756 657 101 17 76 718 622069850 622070488 5.500000e-122 448.0
8 TraesCS1D01G374800 chr1A 82.932 1371 147 44 923 2236 547004312 547005652 0.000000e+00 1155.0
9 TraesCS1D01G374800 chr1A 90.000 190 17 2 2393 2582 547008419 547008606 7.740000e-61 244.0
10 TraesCS1D01G374800 chr1A 95.876 97 4 0 2294 2390 547006980 547007076 1.040000e-34 158.0
11 TraesCS1D01G374800 chr1A 95.122 82 3 1 1 82 575653074 575653154 8.130000e-26 128.0
12 TraesCS1D01G374800 chr1A 75.319 235 41 14 1550 1768 2075404 2075637 2.290000e-16 97.1
13 TraesCS1D01G374800 chr2A 81.174 1158 128 40 903 2035 697376400 697375308 0.000000e+00 848.0
14 TraesCS1D01G374800 chr2A 80.176 227 31 11 2580 2797 71612745 71612524 1.040000e-34 158.0
15 TraesCS1D01G374800 chrUn 81.289 1117 139 35 835 1941 329015422 329014366 0.000000e+00 841.0
16 TraesCS1D01G374800 chr2B 81.289 1117 139 35 835 1941 665420697 665419641 0.000000e+00 841.0
17 TraesCS1D01G374800 chr2B 80.499 1123 141 40 835 1941 665446924 665445864 0.000000e+00 789.0
18 TraesCS1D01G374800 chr2B 91.667 216 18 0 2583 2798 422507145 422507360 1.630000e-77 300.0
19 TraesCS1D01G374800 chr7D 79.574 798 128 22 991 1779 61759726 61760497 3.170000e-149 538.0
20 TraesCS1D01G374800 chr7D 72.755 323 68 15 171 479 30531284 30530968 1.070000e-14 91.6
21 TraesCS1D01G374800 chr3D 92.130 216 17 0 2583 2798 588832348 588832563 3.500000e-79 305.0
22 TraesCS1D01G374800 chr3D 83.568 213 25 5 2583 2795 153173490 153173692 1.020000e-44 191.0
23 TraesCS1D01G374800 chr3D 97.500 80 2 0 1 80 563044151 563044230 1.350000e-28 137.0
24 TraesCS1D01G374800 chr3D 95.238 84 4 0 1 84 402850720 402850803 1.750000e-27 134.0
25 TraesCS1D01G374800 chr4D 87.156 218 15 2 2583 2798 505439051 505439257 4.660000e-58 235.0
26 TraesCS1D01G374800 chr4D 97.500 80 2 0 1 80 509649189 509649268 1.350000e-28 137.0
27 TraesCS1D01G374800 chr4D 76.190 147 29 4 167 310 465558637 465558494 3.870000e-09 73.1
28 TraesCS1D01G374800 chr7A 82.028 217 37 2 2583 2798 510968287 510968072 1.710000e-42 183.0
29 TraesCS1D01G374800 chr2D 91.729 133 10 1 2583 2715 618654107 618654238 1.710000e-42 183.0
30 TraesCS1D01G374800 chr5A 97.531 81 2 0 2 82 396219348 396219428 3.760000e-29 139.0
31 TraesCS1D01G374800 chr5A 96.341 82 3 0 1 82 475331982 475332063 4.860000e-28 135.0
32 TraesCS1D01G374800 chr5D 95.238 84 4 0 1 84 382430526 382430609 1.750000e-27 134.0
33 TraesCS1D01G374800 chr5D 85.321 109 15 1 254 361 499238707 499238599 8.190000e-21 111.0
34 TraesCS1D01G374800 chr6A 83.193 119 18 2 276 393 460806178 460806061 1.060000e-19 108.0
35 TraesCS1D01G374800 chr4B 80.682 88 6 7 636 721 55673571 55673649 1.080000e-04 58.4
36 TraesCS1D01G374800 chr3A 80.263 76 14 1 357 432 190230698 190230624 3.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G374800 chr1D 452206853 452209650 2797 False 5168 5168 100.000000 1 2798 1 chr1D.!!$F5 2797
1 TraesCS1D01G374800 chr1B 622077036 622077927 891 False 1365 1365 94.525000 1919 2798 1 chr1B.!!$F1 879
2 TraesCS1D01G374800 chr1B 622069850 622071562 1712 False 905 1362 85.429500 76 1921 2 chr1B.!!$F2 1845
3 TraesCS1D01G374800 chr1A 547004312 547008606 4294 False 519 1155 89.602667 923 2582 3 chr1A.!!$F3 1659
4 TraesCS1D01G374800 chr2A 697375308 697376400 1092 True 848 848 81.174000 903 2035 1 chr2A.!!$R2 1132
5 TraesCS1D01G374800 chrUn 329014366 329015422 1056 True 841 841 81.289000 835 1941 1 chrUn.!!$R1 1106
6 TraesCS1D01G374800 chr2B 665419641 665420697 1056 True 841 841 81.289000 835 1941 1 chr2B.!!$R1 1106
7 TraesCS1D01G374800 chr2B 665445864 665446924 1060 True 789 789 80.499000 835 1941 1 chr2B.!!$R2 1106
8 TraesCS1D01G374800 chr7D 61759726 61760497 771 False 538 538 79.574000 991 1779 1 chr7D.!!$F1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 814 0.03601 CTGTCGGGGAATTCAGCAGT 60.036 55.0 7.93 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 5208 0.592637 CAGACATGCGCACCAAAAGA 59.407 50.0 14.9 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.346005 TCACTCATTTTACTCCGTATATAGTCA 57.654 33.333 0.00 0.00 0.00 3.41
30 31 9.395707 CACTCATTTTACTCCGTATATAGTCAC 57.604 37.037 0.00 0.00 0.00 3.67
31 32 9.352191 ACTCATTTTACTCCGTATATAGTCACT 57.648 33.333 0.00 0.00 0.00 3.41
33 34 9.961265 TCATTTTACTCCGTATATAGTCACTTG 57.039 33.333 0.00 0.00 0.00 3.16
34 35 9.745880 CATTTTACTCCGTATATAGTCACTTGT 57.254 33.333 0.00 0.00 0.00 3.16
36 37 9.577110 TTTTACTCCGTATATAGTCACTTGTTG 57.423 33.333 0.00 0.00 0.00 3.33
37 38 8.510243 TTACTCCGTATATAGTCACTTGTTGA 57.490 34.615 0.00 0.00 0.00 3.18
38 39 7.400599 ACTCCGTATATAGTCACTTGTTGAA 57.599 36.000 0.00 0.00 35.39 2.69
39 40 7.833786 ACTCCGTATATAGTCACTTGTTGAAA 58.166 34.615 0.00 0.00 35.39 2.69
40 41 8.475639 ACTCCGTATATAGTCACTTGTTGAAAT 58.524 33.333 0.00 0.00 35.39 2.17
41 42 8.642908 TCCGTATATAGTCACTTGTTGAAATG 57.357 34.615 0.00 0.00 35.39 2.32
42 43 7.223971 TCCGTATATAGTCACTTGTTGAAATGC 59.776 37.037 0.00 0.00 35.39 3.56
43 44 7.345192 CGTATATAGTCACTTGTTGAAATGCC 58.655 38.462 0.00 0.00 35.39 4.40
44 45 7.224753 CGTATATAGTCACTTGTTGAAATGCCT 59.775 37.037 0.00 0.00 35.39 4.75
45 46 9.542462 GTATATAGTCACTTGTTGAAATGCCTA 57.458 33.333 0.00 0.00 35.39 3.93
46 47 6.992063 ATAGTCACTTGTTGAAATGCCTAG 57.008 37.500 0.00 0.00 35.39 3.02
47 48 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
48 49 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
49 50 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
50 51 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
51 52 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
52 53 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
53 54 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
54 55 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
55 56 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
56 57 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
57 58 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
58 59 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
59 60 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
60 61 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
61 62 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
64 65 9.959721 AATGCCTAGAAAGACAAGTATTTAAGA 57.040 29.630 0.00 0.00 0.00 2.10
65 66 9.959721 ATGCCTAGAAAGACAAGTATTTAAGAA 57.040 29.630 0.00 0.00 0.00 2.52
66 67 9.216117 TGCCTAGAAAGACAAGTATTTAAGAAC 57.784 33.333 0.00 0.00 0.00 3.01
67 68 8.381387 GCCTAGAAAGACAAGTATTTAAGAACG 58.619 37.037 0.00 0.00 0.00 3.95
68 69 8.870879 CCTAGAAAGACAAGTATTTAAGAACGG 58.129 37.037 0.00 0.00 0.00 4.44
69 70 9.635520 CTAGAAAGACAAGTATTTAAGAACGGA 57.364 33.333 0.00 0.00 0.00 4.69
70 71 8.535690 AGAAAGACAAGTATTTAAGAACGGAG 57.464 34.615 0.00 0.00 0.00 4.63
71 72 7.603024 AGAAAGACAAGTATTTAAGAACGGAGG 59.397 37.037 0.00 0.00 0.00 4.30
72 73 5.731591 AGACAAGTATTTAAGAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
73 74 5.482878 AGACAAGTATTTAAGAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
74 75 5.731591 ACAAGTATTTAAGAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
82 83 3.103080 AGAACGGAGGGAGTAGATTGT 57.897 47.619 0.00 0.00 0.00 2.71
87 88 3.231818 CGGAGGGAGTAGATTGTACCAT 58.768 50.000 0.00 0.00 0.00 3.55
89 90 4.831155 CGGAGGGAGTAGATTGTACCATAA 59.169 45.833 0.00 0.00 0.00 1.90
97 98 9.110502 GGAGTAGATTGTACCATAAAGAAAAGG 57.889 37.037 0.00 0.00 0.00 3.11
99 100 8.832735 AGTAGATTGTACCATAAAGAAAAGGGA 58.167 33.333 0.00 0.00 0.00 4.20
108 109 8.146053 ACCATAAAGAAAAGGGAAATAAAGGG 57.854 34.615 0.00 0.00 0.00 3.95
123 126 9.719355 GGAAATAAAGGGAAAAATGTAATGTGT 57.281 29.630 0.00 0.00 0.00 3.72
128 131 3.007398 GGGAAAAATGTAATGTGTGCCCA 59.993 43.478 0.00 0.00 0.00 5.36
153 159 6.451285 CGTTTAAGAGCTTTTGCAAACGTGA 61.451 40.000 20.97 0.00 46.45 4.35
166 172 3.485216 GCAAACGTGATCGATTTGTAGGG 60.485 47.826 0.00 0.00 38.70 3.53
193 199 5.666969 TTTTTCTGAACACAGTACCGATG 57.333 39.130 0.00 0.00 33.82 3.84
194 200 4.330944 TTTCTGAACACAGTACCGATGT 57.669 40.909 0.00 0.00 33.82 3.06
198 204 4.948004 TCTGAACACAGTACCGATGTAGAT 59.052 41.667 0.00 0.00 33.82 1.98
206 212 5.712446 ACAGTACCGATGTAGATGCTCATAT 59.288 40.000 0.00 0.00 0.00 1.78
210 216 9.058174 AGTACCGATGTAGATGCTCATATATAC 57.942 37.037 0.00 0.00 0.00 1.47
231 237 7.670009 ATACGTACATACAGTCACTCCTATC 57.330 40.000 0.00 0.00 0.00 2.08
234 240 6.546403 ACGTACATACAGTCACTCCTATCAAT 59.454 38.462 0.00 0.00 0.00 2.57
236 242 6.166984 ACATACAGTCACTCCTATCAATGG 57.833 41.667 0.00 0.00 0.00 3.16
239 245 3.452627 ACAGTCACTCCTATCAATGGACC 59.547 47.826 0.00 0.00 0.00 4.46
241 247 2.039418 TCACTCCTATCAATGGACCCG 58.961 52.381 0.00 0.00 0.00 5.28
245 251 0.535102 CCTATCAATGGACCCGCACC 60.535 60.000 0.00 0.00 0.00 5.01
246 252 0.469917 CTATCAATGGACCCGCACCT 59.530 55.000 0.00 0.00 0.00 4.00
248 254 0.916086 ATCAATGGACCCGCACCTTA 59.084 50.000 0.00 0.00 0.00 2.69
249 255 0.916086 TCAATGGACCCGCACCTTAT 59.084 50.000 0.00 0.00 0.00 1.73
252 258 0.759346 ATGGACCCGCACCTTATCTC 59.241 55.000 0.00 0.00 0.00 2.75
261 267 3.056250 CCGCACCTTATCTCTATGAGCAT 60.056 47.826 0.00 0.00 0.00 3.79
262 268 4.562347 CCGCACCTTATCTCTATGAGCATT 60.562 45.833 0.00 0.00 0.00 3.56
265 271 5.411053 GCACCTTATCTCTATGAGCATTTCC 59.589 44.000 0.00 0.00 0.00 3.13
270 276 5.999205 ATCTCTATGAGCATTTCCGAGAT 57.001 39.130 0.00 0.00 32.81 2.75
272 278 7.658525 ATCTCTATGAGCATTTCCGAGATAT 57.341 36.000 0.00 0.00 34.41 1.63
274 280 8.581253 TCTCTATGAGCATTTCCGAGATATTA 57.419 34.615 0.00 0.00 0.00 0.98
278 284 4.997395 TGAGCATTTCCGAGATATTAAGCC 59.003 41.667 0.00 0.00 0.00 4.35
289 295 5.287274 CGAGATATTAAGCCGACACATCATC 59.713 44.000 0.00 0.00 0.00 2.92
292 298 6.648310 AGATATTAAGCCGACACATCATCTTG 59.352 38.462 0.00 0.00 0.00 3.02
294 300 2.306341 AGCCGACACATCATCTTGAG 57.694 50.000 0.00 0.00 0.00 3.02
295 301 1.134580 AGCCGACACATCATCTTGAGG 60.135 52.381 0.00 0.00 33.86 3.86
298 304 2.674852 CCGACACATCATCTTGAGGTTG 59.325 50.000 0.00 0.00 38.32 3.77
300 306 3.369147 CGACACATCATCTTGAGGTTGAC 59.631 47.826 0.00 0.00 38.32 3.18
304 310 4.452114 CACATCATCTTGAGGTTGACGAAA 59.548 41.667 0.00 0.00 38.32 3.46
307 313 3.926527 TCATCTTGAGGTTGACGAAATCG 59.073 43.478 0.48 0.48 46.33 3.34
308 314 2.066262 TCTTGAGGTTGACGAAATCGC 58.934 47.619 2.15 0.00 44.43 4.58
313 319 0.165944 GGTTGACGAAATCGCCACAG 59.834 55.000 2.15 0.00 44.43 3.66
318 324 2.094659 CGAAATCGCCACAGACGCT 61.095 57.895 0.00 0.00 0.00 5.07
330 336 2.987149 CACAGACGCTTTTGTAGTCGAT 59.013 45.455 0.00 0.00 39.65 3.59
332 338 2.345641 CAGACGCTTTTGTAGTCGATGG 59.654 50.000 0.00 0.00 39.65 3.51
344 350 0.531200 GTCGATGGGAACGTCTCCTT 59.469 55.000 13.94 6.11 44.68 3.36
346 352 0.530744 CGATGGGAACGTCTCCTTCA 59.469 55.000 17.18 9.47 44.68 3.02
347 353 1.137086 CGATGGGAACGTCTCCTTCAT 59.863 52.381 17.18 12.48 44.68 2.57
355 361 3.057969 ACGTCTCCTTCATTGAATGCA 57.942 42.857 0.00 0.00 0.00 3.96
361 367 3.346315 TCCTTCATTGAATGCACATCGT 58.654 40.909 0.00 0.00 0.00 3.73
363 369 3.855379 CCTTCATTGAATGCACATCGTTG 59.145 43.478 0.00 0.00 0.00 4.10
364 370 2.866198 TCATTGAATGCACATCGTTGC 58.134 42.857 0.00 0.00 43.31 4.17
373 379 0.592637 CACATCGTTGCAAAGCCTGA 59.407 50.000 17.02 5.69 0.00 3.86
381 387 5.160641 TCGTTGCAAAGCCTGAAATAAATC 58.839 37.500 7.57 0.00 0.00 2.17
384 390 5.480642 TGCAAAGCCTGAAATAAATCCAA 57.519 34.783 0.00 0.00 0.00 3.53
385 391 5.481105 TGCAAAGCCTGAAATAAATCCAAG 58.519 37.500 0.00 0.00 0.00 3.61
393 399 9.205513 AGCCTGAAATAAATCCAAGAATAATGT 57.794 29.630 0.00 0.00 0.00 2.71
415 421 7.022055 TGTGTACACCAGTGTGAAATTTAAG 57.978 36.000 22.91 0.00 45.76 1.85
418 424 7.012044 GTGTACACCAGTGTGAAATTTAAGACT 59.988 37.037 15.42 0.00 45.76 3.24
420 426 9.048446 GTACACCAGTGTGAAATTTAAGACTTA 57.952 33.333 13.62 0.00 45.76 2.24
436 442 5.441718 AGACTTAAAATCTGATGGGCTGA 57.558 39.130 0.00 0.00 0.00 4.26
440 446 2.725221 AAATCTGATGGGCTGAGGAC 57.275 50.000 0.00 0.00 0.00 3.85
441 447 0.842635 AATCTGATGGGCTGAGGACC 59.157 55.000 0.00 0.00 42.24 4.46
458 467 3.120898 GGACCCTAACCTCCTAACCATT 58.879 50.000 0.00 0.00 0.00 3.16
467 476 5.255397 ACCTCCTAACCATTCAATCACAA 57.745 39.130 0.00 0.00 0.00 3.33
468 477 5.010282 ACCTCCTAACCATTCAATCACAAC 58.990 41.667 0.00 0.00 0.00 3.32
469 478 5.222130 ACCTCCTAACCATTCAATCACAACT 60.222 40.000 0.00 0.00 0.00 3.16
470 479 5.711976 CCTCCTAACCATTCAATCACAACTT 59.288 40.000 0.00 0.00 0.00 2.66
471 480 6.884295 CCTCCTAACCATTCAATCACAACTTA 59.116 38.462 0.00 0.00 0.00 2.24
472 481 7.393234 CCTCCTAACCATTCAATCACAACTTAA 59.607 37.037 0.00 0.00 0.00 1.85
485 494 9.850628 CAATCACAACTTAATTCACTGATTGAT 57.149 29.630 10.57 0.00 43.00 2.57
510 519 4.758674 CGTAGGTGAGTCCGGATAAATAGA 59.241 45.833 7.81 0.00 41.99 1.98
519 529 5.601313 AGTCCGGATAAATAGAGGTAGCAAA 59.399 40.000 7.81 0.00 0.00 3.68
563 575 5.341169 AGGATTTCCCTTTTATTGCCAGAA 58.659 37.500 0.00 0.00 44.85 3.02
596 608 0.603065 CCCAAAAAGAAAGAGGCGGG 59.397 55.000 0.00 0.00 0.00 6.13
597 609 1.328279 CCAAAAAGAAAGAGGCGGGT 58.672 50.000 0.00 0.00 0.00 5.28
610 622 1.448893 GCGGGTTGTATCGGCTCAA 60.449 57.895 0.00 0.00 0.00 3.02
617 629 4.157840 GGGTTGTATCGGCTCAATTTCTTT 59.842 41.667 0.00 0.00 0.00 2.52
651 663 4.948062 AAATAAAAGGGAGTGGCTAGGT 57.052 40.909 0.00 0.00 0.00 3.08
652 664 4.505324 AATAAAAGGGAGTGGCTAGGTC 57.495 45.455 0.00 0.00 0.00 3.85
653 665 2.046280 AAAAGGGAGTGGCTAGGTCT 57.954 50.000 0.00 0.00 0.00 3.85
654 666 1.574263 AAAGGGAGTGGCTAGGTCTC 58.426 55.000 0.00 0.00 0.00 3.36
662 674 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
750 762 9.985730 TTTTTCACAGCTTAATCAAATCTCATT 57.014 25.926 0.00 0.00 0.00 2.57
751 763 9.630098 TTTTCACAGCTTAATCAAATCTCATTC 57.370 29.630 0.00 0.00 0.00 2.67
752 764 7.008440 TCACAGCTTAATCAAATCTCATTCG 57.992 36.000 0.00 0.00 0.00 3.34
754 766 6.904011 CACAGCTTAATCAAATCTCATTCGAC 59.096 38.462 0.00 0.00 0.00 4.20
755 767 6.820656 ACAGCTTAATCAAATCTCATTCGACT 59.179 34.615 0.00 0.00 0.00 4.18
756 768 7.124471 CAGCTTAATCAAATCTCATTCGACTG 58.876 38.462 0.00 0.00 0.00 3.51
757 769 7.010830 CAGCTTAATCAAATCTCATTCGACTGA 59.989 37.037 5.28 5.28 0.00 3.41
758 770 7.224362 AGCTTAATCAAATCTCATTCGACTGAG 59.776 37.037 22.96 22.96 43.33 3.35
786 798 9.807921 TTTAGAAAATAGAAATCTGGGTTCTGT 57.192 29.630 11.47 0.00 36.06 3.41
787 799 7.929941 AGAAAATAGAAATCTGGGTTCTGTC 57.070 36.000 0.00 0.00 36.06 3.51
788 800 6.595716 AGAAAATAGAAATCTGGGTTCTGTCG 59.404 38.462 0.00 0.00 36.06 4.35
789 801 2.770164 AGAAATCTGGGTTCTGTCGG 57.230 50.000 0.00 0.00 34.03 4.79
790 802 1.279271 AGAAATCTGGGTTCTGTCGGG 59.721 52.381 0.00 0.00 34.03 5.14
791 803 0.328258 AAATCTGGGTTCTGTCGGGG 59.672 55.000 0.00 0.00 0.00 5.73
792 804 0.546747 AATCTGGGTTCTGTCGGGGA 60.547 55.000 0.00 0.00 0.00 4.81
793 805 0.546747 ATCTGGGTTCTGTCGGGGAA 60.547 55.000 0.00 0.00 0.00 3.97
794 806 0.546747 TCTGGGTTCTGTCGGGGAAT 60.547 55.000 0.00 0.00 0.00 3.01
795 807 0.328258 CTGGGTTCTGTCGGGGAATT 59.672 55.000 0.00 0.00 0.00 2.17
796 808 0.326927 TGGGTTCTGTCGGGGAATTC 59.673 55.000 0.00 0.00 0.00 2.17
797 809 0.326927 GGGTTCTGTCGGGGAATTCA 59.673 55.000 7.93 0.00 0.00 2.57
798 810 1.679032 GGGTTCTGTCGGGGAATTCAG 60.679 57.143 7.93 0.00 0.00 3.02
799 811 1.087501 GTTCTGTCGGGGAATTCAGC 58.912 55.000 7.93 0.00 0.00 4.26
800 812 0.690192 TTCTGTCGGGGAATTCAGCA 59.310 50.000 7.93 0.00 0.00 4.41
801 813 0.250234 TCTGTCGGGGAATTCAGCAG 59.750 55.000 7.93 7.53 0.00 4.24
802 814 0.036010 CTGTCGGGGAATTCAGCAGT 60.036 55.000 7.93 0.00 0.00 4.40
803 815 1.207089 CTGTCGGGGAATTCAGCAGTA 59.793 52.381 7.93 0.00 0.00 2.74
804 816 1.837439 TGTCGGGGAATTCAGCAGTAT 59.163 47.619 7.93 0.00 0.00 2.12
805 817 3.035363 TGTCGGGGAATTCAGCAGTATA 58.965 45.455 7.93 0.00 0.00 1.47
806 818 3.181469 TGTCGGGGAATTCAGCAGTATAC 60.181 47.826 7.93 0.00 0.00 1.47
807 819 3.035363 TCGGGGAATTCAGCAGTATACA 58.965 45.455 7.93 0.00 0.00 2.29
808 820 3.646162 TCGGGGAATTCAGCAGTATACAT 59.354 43.478 7.93 0.00 0.00 2.29
809 821 4.836175 TCGGGGAATTCAGCAGTATACATA 59.164 41.667 7.93 0.00 0.00 2.29
810 822 5.047306 TCGGGGAATTCAGCAGTATACATAG 60.047 44.000 7.93 0.00 0.00 2.23
811 823 5.279506 CGGGGAATTCAGCAGTATACATAGT 60.280 44.000 7.93 0.00 0.00 2.12
812 824 6.166982 GGGGAATTCAGCAGTATACATAGTC 58.833 44.000 7.93 0.00 0.00 2.59
813 825 6.166982 GGGAATTCAGCAGTATACATAGTCC 58.833 44.000 7.93 2.06 0.00 3.85
814 826 6.166982 GGAATTCAGCAGTATACATAGTCCC 58.833 44.000 7.93 0.00 0.00 4.46
815 827 4.848562 TTCAGCAGTATACATAGTCCCG 57.151 45.455 5.50 0.00 0.00 5.14
816 828 3.828921 TCAGCAGTATACATAGTCCCGT 58.171 45.455 5.50 0.00 0.00 5.28
817 829 3.819337 TCAGCAGTATACATAGTCCCGTC 59.181 47.826 5.50 0.00 0.00 4.79
818 830 2.812591 AGCAGTATACATAGTCCCGTCG 59.187 50.000 5.50 0.00 0.00 5.12
819 831 2.810274 GCAGTATACATAGTCCCGTCGA 59.190 50.000 5.50 0.00 0.00 4.20
820 832 3.120269 GCAGTATACATAGTCCCGTCGAG 60.120 52.174 5.50 0.00 0.00 4.04
821 833 4.063689 CAGTATACATAGTCCCGTCGAGT 58.936 47.826 5.50 0.00 0.00 4.18
822 834 4.152045 CAGTATACATAGTCCCGTCGAGTC 59.848 50.000 5.50 0.00 0.00 3.36
823 835 1.575244 TACATAGTCCCGTCGAGTCG 58.425 55.000 6.09 6.09 0.00 4.18
824 836 0.107993 ACATAGTCCCGTCGAGTCGA 60.108 55.000 12.09 12.09 0.00 4.20
825 837 0.582482 CATAGTCCCGTCGAGTCGAG 59.418 60.000 17.12 10.03 36.23 4.04
826 838 0.177604 ATAGTCCCGTCGAGTCGAGT 59.822 55.000 17.12 0.00 36.23 4.18
827 839 0.036952 TAGTCCCGTCGAGTCGAGTT 60.037 55.000 17.12 0.83 36.23 3.01
828 840 1.134281 GTCCCGTCGAGTCGAGTTC 59.866 63.158 17.12 3.29 36.23 3.01
829 841 2.037136 TCCCGTCGAGTCGAGTTCC 61.037 63.158 17.12 2.89 36.23 3.62
830 842 2.039405 CCCGTCGAGTCGAGTTCCT 61.039 63.158 17.12 0.00 36.23 3.36
831 843 1.134901 CCGTCGAGTCGAGTTCCTG 59.865 63.158 17.12 1.90 36.23 3.86
832 844 1.575576 CCGTCGAGTCGAGTTCCTGT 61.576 60.000 17.12 0.00 36.23 4.00
833 845 0.237761 CGTCGAGTCGAGTTCCTGTT 59.762 55.000 17.12 0.00 36.23 3.16
838 850 2.351835 CGAGTCGAGTTCCTGTTGATGT 60.352 50.000 6.73 0.00 0.00 3.06
848 860 1.645034 CTGTTGATGTGTCTAGGCCG 58.355 55.000 0.00 0.00 0.00 6.13
855 867 2.103042 GTGTCTAGGCCGCTGCTTG 61.103 63.158 0.00 0.00 37.74 4.01
856 868 2.282783 TGTCTAGGCCGCTGCTTGA 61.283 57.895 0.00 0.00 37.74 3.02
858 870 1.079127 TCTAGGCCGCTGCTTGAAC 60.079 57.895 0.00 0.00 37.74 3.18
860 872 1.364626 CTAGGCCGCTGCTTGAACAG 61.365 60.000 0.00 0.00 40.80 3.16
865 877 0.095935 CCGCTGCTTGAACAGAATCG 59.904 55.000 0.00 0.00 40.25 3.34
866 878 1.070821 CGCTGCTTGAACAGAATCGA 58.929 50.000 0.00 0.00 40.25 3.59
867 879 1.662629 CGCTGCTTGAACAGAATCGAT 59.337 47.619 0.00 0.00 40.25 3.59
868 880 2.285486 CGCTGCTTGAACAGAATCGATC 60.285 50.000 0.00 0.00 40.25 3.69
874 886 2.526077 TGAACAGAATCGATCCGTTCG 58.474 47.619 20.50 0.00 44.85 3.95
898 910 3.120923 CGACGTTATAACCGCAAACTTGT 60.121 43.478 10.01 0.00 0.00 3.16
927 971 6.761714 CAGTATAAAAAGTACCCAAGCGATCT 59.238 38.462 0.00 0.00 0.00 2.75
933 977 4.060038 AGTACCCAAGCGATCTTATGTG 57.940 45.455 0.00 0.00 0.00 3.21
939 984 5.012046 ACCCAAGCGATCTTATGTGATCATA 59.988 40.000 0.00 0.00 42.01 2.15
940 985 5.349817 CCCAAGCGATCTTATGTGATCATAC 59.650 44.000 0.00 0.00 42.01 2.39
941 986 6.162079 CCAAGCGATCTTATGTGATCATACT 58.838 40.000 0.00 0.00 42.01 2.12
966 1011 1.821753 TCTCTGCTTGTCACTCCTAGC 59.178 52.381 0.00 0.00 0.00 3.42
967 1012 1.824230 CTCTGCTTGTCACTCCTAGCT 59.176 52.381 0.00 0.00 34.77 3.32
968 1013 3.020274 CTCTGCTTGTCACTCCTAGCTA 58.980 50.000 0.00 0.00 34.77 3.32
969 1014 3.020274 TCTGCTTGTCACTCCTAGCTAG 58.980 50.000 14.20 14.20 34.77 3.42
970 1015 2.100584 CTGCTTGTCACTCCTAGCTAGG 59.899 54.545 30.94 30.94 45.02 3.02
971 1016 2.104170 GCTTGTCACTCCTAGCTAGGT 58.896 52.381 33.84 17.34 44.02 3.08
976 1021 2.424246 GTCACTCCTAGCTAGGTGACAC 59.576 54.545 36.11 28.87 43.53 3.67
989 1034 1.409064 GGTGACACAGGAGCGATATCA 59.591 52.381 8.08 0.00 0.00 2.15
1041 1087 1.204113 CCTCCTGCTTCCTTCCACCT 61.204 60.000 0.00 0.00 0.00 4.00
1058 1104 1.682451 CCTTCGCCGTCCTCCCAATA 61.682 60.000 0.00 0.00 0.00 1.90
1072 1118 1.298340 CAATACTCCACGGTGGGCA 59.702 57.895 26.07 12.30 38.32 5.36
1073 1119 1.024579 CAATACTCCACGGTGGGCAC 61.025 60.000 26.07 0.00 38.32 5.01
1548 1624 3.584848 AGTTCCTGCAGGTAGATGAAACT 59.415 43.478 31.58 25.98 36.34 2.66
1607 1683 1.453015 GTGTGACCACCACTGCCAA 60.453 57.895 0.00 0.00 45.86 4.52
1779 1855 4.834453 CTCCAGGCGCTGCAGGAG 62.834 72.222 17.12 18.31 42.59 3.69
1797 1873 2.265739 CAGCAGGACAGCGCCTAA 59.734 61.111 2.29 0.00 40.15 2.69
1849 1929 1.364626 GCAGATGAAGTGGACGCCTG 61.365 60.000 0.00 0.00 0.00 4.85
1857 1937 1.267121 AGTGGACGCCTGTAACATCT 58.733 50.000 0.00 0.00 0.00 2.90
1999 2103 6.308566 ACTTGTGTTCTTCTACTCCTACTCT 58.691 40.000 0.00 0.00 0.00 3.24
2006 2110 5.177326 TCTTCTACTCCTACTCTTGACGTC 58.823 45.833 9.11 9.11 0.00 4.34
2424 5161 0.264657 TCCCGGATCATCCTCTTCCA 59.735 55.000 0.73 0.00 33.30 3.53
2471 5208 2.289072 CCACAATCGGTCACTCTTCACT 60.289 50.000 0.00 0.00 0.00 3.41
2493 5230 0.250510 TTTGGTGCGCATGTCTGGTA 60.251 50.000 15.91 0.00 0.00 3.25
2556 5307 1.081242 GCCATGCGGTGAACTTGTG 60.081 57.895 0.00 0.00 33.28 3.33
2632 5384 0.238289 GCAACCATCCGACACAACTG 59.762 55.000 0.00 0.00 0.00 3.16
2638 5390 2.337583 CATCCGACACAACTGTTCGAT 58.662 47.619 12.75 5.51 33.60 3.59
2680 5432 4.023291 ACAGTCACACCCAAAAGAACAAT 58.977 39.130 0.00 0.00 0.00 2.71
2715 5467 3.743396 AGAGAAAGAATGACAACAGCGTC 59.257 43.478 0.00 0.00 36.40 5.19
2735 5487 1.058903 GATCGACAAAAGCGACGGC 59.941 57.895 0.00 0.00 40.94 5.68
2737 5489 1.019278 ATCGACAAAAGCGACGGCAT 61.019 50.000 0.00 0.00 43.41 4.40
2773 5525 2.092914 GTCCTCCGAAGAATTCCACCAT 60.093 50.000 0.65 0.00 43.81 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 8.959548 TTCAACAAGTGACTATATACGGAGTAA 58.040 33.333 0.00 0.00 41.03 2.24
15 16 8.755941 CATTTCAACAAGTGACTATATACGGAG 58.244 37.037 0.00 0.00 35.39 4.63
16 17 7.223971 GCATTTCAACAAGTGACTATATACGGA 59.776 37.037 0.00 0.00 35.39 4.69
17 18 7.345192 GCATTTCAACAAGTGACTATATACGG 58.655 38.462 0.00 0.00 35.39 4.02
18 19 7.224753 AGGCATTTCAACAAGTGACTATATACG 59.775 37.037 0.00 0.00 35.84 3.06
19 20 8.438676 AGGCATTTCAACAAGTGACTATATAC 57.561 34.615 0.00 0.00 35.84 1.47
20 21 9.764363 CTAGGCATTTCAACAAGTGACTATATA 57.236 33.333 0.00 0.00 38.73 0.86
21 22 8.486210 TCTAGGCATTTCAACAAGTGACTATAT 58.514 33.333 0.00 0.00 38.73 0.86
22 23 7.847096 TCTAGGCATTTCAACAAGTGACTATA 58.153 34.615 0.00 0.00 38.73 1.31
23 24 6.711277 TCTAGGCATTTCAACAAGTGACTAT 58.289 36.000 0.00 0.00 38.73 2.12
24 25 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
25 26 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
26 27 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
27 28 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
28 29 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
29 30 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
30 31 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
31 32 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
32 33 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
33 34 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
34 35 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
35 36 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
38 39 9.959721 TCTTAAATACTTGTCTTTCTAGGCATT 57.040 29.630 0.00 0.00 35.56 3.56
39 40 9.959721 TTCTTAAATACTTGTCTTTCTAGGCAT 57.040 29.630 0.00 0.00 35.56 4.40
40 41 9.216117 GTTCTTAAATACTTGTCTTTCTAGGCA 57.784 33.333 0.00 0.00 33.22 4.75
41 42 8.381387 CGTTCTTAAATACTTGTCTTTCTAGGC 58.619 37.037 0.00 0.00 0.00 3.93
42 43 8.870879 CCGTTCTTAAATACTTGTCTTTCTAGG 58.129 37.037 0.00 0.00 0.00 3.02
43 44 9.635520 TCCGTTCTTAAATACTTGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
44 45 9.635520 CTCCGTTCTTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
45 46 7.603024 CCTCCGTTCTTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
46 47 7.148457 CCCTCCGTTCTTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
47 48 6.653740 CCCTCCGTTCTTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
48 49 6.013984 TCCCTCCGTTCTTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
49 50 5.482878 TCCCTCCGTTCTTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
50 51 5.727434 TCCCTCCGTTCTTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
51 52 5.247792 ACTCCCTCCGTTCTTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
52 53 5.731591 ACTCCCTCCGTTCTTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
53 54 6.894103 TCTACTCCCTCCGTTCTTAAATACTT 59.106 38.462 0.00 0.00 0.00 2.24
54 55 6.430007 TCTACTCCCTCCGTTCTTAAATACT 58.570 40.000 0.00 0.00 0.00 2.12
55 56 6.705863 TCTACTCCCTCCGTTCTTAAATAC 57.294 41.667 0.00 0.00 0.00 1.89
56 57 7.343833 ACAATCTACTCCCTCCGTTCTTAAATA 59.656 37.037 0.00 0.00 0.00 1.40
57 58 6.156429 ACAATCTACTCCCTCCGTTCTTAAAT 59.844 38.462 0.00 0.00 0.00 1.40
58 59 5.482878 ACAATCTACTCCCTCCGTTCTTAAA 59.517 40.000 0.00 0.00 0.00 1.52
59 60 5.021458 ACAATCTACTCCCTCCGTTCTTAA 58.979 41.667 0.00 0.00 0.00 1.85
60 61 4.607239 ACAATCTACTCCCTCCGTTCTTA 58.393 43.478 0.00 0.00 0.00 2.10
61 62 3.442076 ACAATCTACTCCCTCCGTTCTT 58.558 45.455 0.00 0.00 0.00 2.52
62 63 3.103080 ACAATCTACTCCCTCCGTTCT 57.897 47.619 0.00 0.00 0.00 3.01
63 64 3.067883 GGTACAATCTACTCCCTCCGTTC 59.932 52.174 0.00 0.00 0.00 3.95
64 65 3.029570 GGTACAATCTACTCCCTCCGTT 58.970 50.000 0.00 0.00 0.00 4.44
65 66 2.024655 TGGTACAATCTACTCCCTCCGT 60.025 50.000 0.00 0.00 31.92 4.69
66 67 2.662866 TGGTACAATCTACTCCCTCCG 58.337 52.381 0.00 0.00 31.92 4.63
82 83 9.262240 CCCTTTATTTCCCTTTTCTTTATGGTA 57.738 33.333 0.00 0.00 0.00 3.25
89 90 9.573166 CATTTTTCCCTTTATTTCCCTTTTCTT 57.427 29.630 0.00 0.00 0.00 2.52
97 98 9.719355 ACACATTACATTTTTCCCTTTATTTCC 57.281 29.630 0.00 0.00 0.00 3.13
99 100 8.998377 GCACACATTACATTTTTCCCTTTATTT 58.002 29.630 0.00 0.00 0.00 1.40
123 126 1.975660 AAAGCTCTTAAACGTGGGCA 58.024 45.000 0.00 0.00 0.00 5.36
124 127 2.661594 CAAAAGCTCTTAAACGTGGGC 58.338 47.619 0.00 0.00 0.00 5.36
128 131 3.789224 CGTTTGCAAAAGCTCTTAAACGT 59.211 39.130 14.67 0.00 42.87 3.99
146 152 3.934068 ACCCTACAAATCGATCACGTTT 58.066 40.909 0.00 0.00 40.69 3.60
172 178 4.699637 ACATCGGTACTGTGTTCAGAAAA 58.300 39.130 0.64 0.00 43.76 2.29
173 179 4.330944 ACATCGGTACTGTGTTCAGAAA 57.669 40.909 0.64 0.00 43.76 2.52
175 181 4.329392 TCTACATCGGTACTGTGTTCAGA 58.671 43.478 12.95 9.23 43.76 3.27
177 183 4.676986 GCATCTACATCGGTACTGTGTTCA 60.677 45.833 12.95 4.00 0.00 3.18
178 184 3.797256 GCATCTACATCGGTACTGTGTTC 59.203 47.826 12.95 0.00 0.00 3.18
179 185 3.447586 AGCATCTACATCGGTACTGTGTT 59.552 43.478 12.95 0.00 0.00 3.32
181 187 3.066760 TGAGCATCTACATCGGTACTGTG 59.933 47.826 0.64 2.42 34.92 3.66
182 188 3.288092 TGAGCATCTACATCGGTACTGT 58.712 45.455 0.64 0.00 34.92 3.55
183 189 3.990318 TGAGCATCTACATCGGTACTG 57.010 47.619 0.00 0.00 34.92 2.74
185 191 8.010540 CGTATATATGAGCATCTACATCGGTAC 58.989 40.741 0.00 0.00 34.92 3.34
186 192 7.713942 ACGTATATATGAGCATCTACATCGGTA 59.286 37.037 8.98 0.00 34.92 4.02
187 193 6.542735 ACGTATATATGAGCATCTACATCGGT 59.457 38.462 8.98 0.00 34.92 4.69
188 194 6.960468 ACGTATATATGAGCATCTACATCGG 58.040 40.000 8.98 0.00 34.92 4.18
189 195 8.548721 TGTACGTATATATGAGCATCTACATCG 58.451 37.037 8.98 0.00 34.92 3.84
198 204 8.448615 GTGACTGTATGTACGTATATATGAGCA 58.551 37.037 14.16 11.86 0.00 4.26
206 212 8.370182 TGATAGGAGTGACTGTATGTACGTATA 58.630 37.037 0.00 0.00 0.00 1.47
210 216 6.373186 TTGATAGGAGTGACTGTATGTACG 57.627 41.667 0.00 0.00 0.00 3.67
220 226 2.224066 CGGGTCCATTGATAGGAGTGAC 60.224 54.545 0.00 0.00 35.42 3.67
231 237 1.134098 AGATAAGGTGCGGGTCCATTG 60.134 52.381 0.00 0.00 0.00 2.82
234 240 0.325296 AGAGATAAGGTGCGGGTCCA 60.325 55.000 0.00 0.00 0.00 4.02
236 242 2.891580 TCATAGAGATAAGGTGCGGGTC 59.108 50.000 0.00 0.00 0.00 4.46
239 245 2.297315 TGCTCATAGAGATAAGGTGCGG 59.703 50.000 0.00 0.00 0.00 5.69
241 247 5.411053 GGAAATGCTCATAGAGATAAGGTGC 59.589 44.000 0.00 0.00 0.00 5.01
245 251 6.918626 TCTCGGAAATGCTCATAGAGATAAG 58.081 40.000 0.00 0.00 30.56 1.73
246 252 6.901081 TCTCGGAAATGCTCATAGAGATAA 57.099 37.500 0.00 0.00 30.56 1.75
248 254 5.999205 ATCTCGGAAATGCTCATAGAGAT 57.001 39.130 0.00 11.01 36.93 2.75
249 255 7.473735 AATATCTCGGAAATGCTCATAGAGA 57.526 36.000 0.00 8.53 36.06 3.10
252 258 7.010923 GGCTTAATATCTCGGAAATGCTCATAG 59.989 40.741 0.00 0.00 0.00 2.23
261 267 4.142116 TGTGTCGGCTTAATATCTCGGAAA 60.142 41.667 0.00 0.00 0.00 3.13
262 268 3.382227 TGTGTCGGCTTAATATCTCGGAA 59.618 43.478 0.00 0.00 0.00 4.30
265 271 4.546570 TGATGTGTCGGCTTAATATCTCG 58.453 43.478 0.00 0.00 0.00 4.04
270 276 5.912892 TCAAGATGATGTGTCGGCTTAATA 58.087 37.500 0.00 0.00 0.00 0.98
272 278 4.183865 CTCAAGATGATGTGTCGGCTTAA 58.816 43.478 0.00 0.00 0.00 1.85
274 280 2.625737 CTCAAGATGATGTGTCGGCTT 58.374 47.619 0.00 0.00 0.00 4.35
278 284 3.369147 GTCAACCTCAAGATGATGTGTCG 59.631 47.826 0.00 0.00 0.00 4.35
289 295 1.128692 GGCGATTTCGTCAACCTCAAG 59.871 52.381 0.00 0.00 44.43 3.02
298 304 1.702299 CGTCTGTGGCGATTTCGTC 59.298 57.895 0.00 0.00 45.40 4.20
300 306 1.626654 AAGCGTCTGTGGCGATTTCG 61.627 55.000 0.00 0.00 34.14 3.46
304 310 0.884704 ACAAAAGCGTCTGTGGCGAT 60.885 50.000 0.00 0.00 35.00 4.58
307 313 1.194772 GACTACAAAAGCGTCTGTGGC 59.805 52.381 0.00 0.00 0.00 5.01
308 314 1.455786 CGACTACAAAAGCGTCTGTGG 59.544 52.381 0.00 0.00 0.00 4.17
313 319 1.659098 CCCATCGACTACAAAAGCGTC 59.341 52.381 0.00 0.00 0.00 5.19
318 324 3.006110 AGACGTTCCCATCGACTACAAAA 59.994 43.478 0.00 0.00 32.63 2.44
344 350 2.866198 GCAACGATGTGCATTCAATGA 58.134 42.857 0.00 0.00 44.29 2.57
355 361 1.317613 TTCAGGCTTTGCAACGATGT 58.682 45.000 7.19 0.00 0.00 3.06
361 367 5.480642 TGGATTTATTTCAGGCTTTGCAA 57.519 34.783 0.00 0.00 0.00 4.08
363 369 5.723295 TCTTGGATTTATTTCAGGCTTTGC 58.277 37.500 0.00 0.00 0.00 3.68
364 370 9.874205 TTATTCTTGGATTTATTTCAGGCTTTG 57.126 29.630 0.00 0.00 0.00 2.77
381 387 5.705441 ACACTGGTGTACACATTATTCTTGG 59.295 40.000 26.51 7.50 42.90 3.61
384 390 6.109156 TCACACTGGTGTACACATTATTCT 57.891 37.500 26.51 0.60 45.45 2.40
385 391 6.795098 TTCACACTGGTGTACACATTATTC 57.205 37.500 26.51 9.31 45.45 1.75
393 399 7.051623 AGTCTTAAATTTCACACTGGTGTACA 58.948 34.615 6.04 0.00 45.45 2.90
395 401 9.616156 TTAAGTCTTAAATTTCACACTGGTGTA 57.384 29.630 6.04 0.00 45.45 2.90
415 421 4.578105 CCTCAGCCCATCAGATTTTAAGTC 59.422 45.833 0.00 0.00 0.00 3.01
418 424 4.526970 GTCCTCAGCCCATCAGATTTTAA 58.473 43.478 0.00 0.00 0.00 1.52
420 426 2.357569 GGTCCTCAGCCCATCAGATTTT 60.358 50.000 0.00 0.00 0.00 1.82
431 437 4.482431 AGGTTAGGGTCCTCAGCC 57.518 61.111 0.00 0.00 40.97 4.85
436 442 1.726352 TGGTTAGGAGGTTAGGGTCCT 59.274 52.381 0.00 0.00 45.60 3.85
440 446 4.855298 TTGAATGGTTAGGAGGTTAGGG 57.145 45.455 0.00 0.00 0.00 3.53
441 447 5.823045 GTGATTGAATGGTTAGGAGGTTAGG 59.177 44.000 0.00 0.00 0.00 2.69
443 449 6.381498 TGTGATTGAATGGTTAGGAGGTTA 57.619 37.500 0.00 0.00 0.00 2.85
445 451 4.927267 TGTGATTGAATGGTTAGGAGGT 57.073 40.909 0.00 0.00 0.00 3.85
467 476 6.986817 CCTACGGATCAATCAGTGAATTAAGT 59.013 38.462 0.00 0.00 40.50 2.24
468 477 6.986817 ACCTACGGATCAATCAGTGAATTAAG 59.013 38.462 0.00 0.00 40.50 1.85
469 478 6.761242 CACCTACGGATCAATCAGTGAATTAA 59.239 38.462 0.00 0.00 40.50 1.40
470 479 6.097696 TCACCTACGGATCAATCAGTGAATTA 59.902 38.462 0.00 0.00 40.50 1.40
471 480 5.104941 TCACCTACGGATCAATCAGTGAATT 60.105 40.000 0.00 0.00 40.50 2.17
472 481 4.405680 TCACCTACGGATCAATCAGTGAAT 59.594 41.667 0.00 0.00 40.50 2.57
476 485 3.366396 ACTCACCTACGGATCAATCAGT 58.634 45.455 0.00 1.54 38.69 3.41
482 491 2.789842 CGGACTCACCTACGGATCA 58.210 57.895 0.00 0.00 36.31 2.92
494 503 4.765856 TGCTACCTCTATTTATCCGGACTC 59.234 45.833 6.12 0.00 0.00 3.36
496 505 5.464030 TTGCTACCTCTATTTATCCGGAC 57.536 43.478 6.12 0.00 0.00 4.79
500 509 6.062095 TGCCTTTTGCTACCTCTATTTATCC 58.938 40.000 0.00 0.00 42.00 2.59
501 510 7.445402 TGATGCCTTTTGCTACCTCTATTTATC 59.555 37.037 0.00 0.00 42.00 1.75
505 514 4.884164 GTGATGCCTTTTGCTACCTCTATT 59.116 41.667 0.00 0.00 42.00 1.73
506 515 4.080356 TGTGATGCCTTTTGCTACCTCTAT 60.080 41.667 0.00 0.00 42.00 1.98
510 519 2.162681 GTGTGATGCCTTTTGCTACCT 58.837 47.619 0.00 0.00 42.00 3.08
519 529 3.121030 GAGCGCGTGTGATGCCTT 61.121 61.111 8.43 0.00 0.00 4.35
596 608 8.911247 ATTTAAAGAAATTGAGCCGATACAAC 57.089 30.769 0.00 0.00 30.77 3.32
641 653 0.328592 TCGACTGAGACCTAGCCACT 59.671 55.000 0.00 0.00 0.00 4.00
724 736 9.985730 AATGAGATTTGATTAAGCTGTGAAAAA 57.014 25.926 0.00 0.00 31.30 1.94
725 737 9.630098 GAATGAGATTTGATTAAGCTGTGAAAA 57.370 29.630 0.00 0.00 31.30 2.29
726 738 7.964559 CGAATGAGATTTGATTAAGCTGTGAAA 59.035 33.333 0.00 0.00 31.30 2.69
727 739 7.334171 TCGAATGAGATTTGATTAAGCTGTGAA 59.666 33.333 0.00 0.00 31.30 3.18
728 740 6.818142 TCGAATGAGATTTGATTAAGCTGTGA 59.182 34.615 0.00 0.00 31.30 3.58
730 742 6.820656 AGTCGAATGAGATTTGATTAAGCTGT 59.179 34.615 0.00 0.00 35.27 4.40
731 743 7.010830 TCAGTCGAATGAGATTTGATTAAGCTG 59.989 37.037 12.21 0.00 35.27 4.24
733 745 7.239166 TCAGTCGAATGAGATTTGATTAAGC 57.761 36.000 12.21 0.00 35.27 3.09
760 772 9.807921 ACAGAACCCAGATTTCTATTTTCTAAA 57.192 29.630 0.00 0.00 31.86 1.85
761 773 9.449719 GACAGAACCCAGATTTCTATTTTCTAA 57.550 33.333 0.00 0.00 31.86 2.10
762 774 7.764443 CGACAGAACCCAGATTTCTATTTTCTA 59.236 37.037 0.00 0.00 31.86 2.10
763 775 6.595716 CGACAGAACCCAGATTTCTATTTTCT 59.404 38.462 0.00 0.00 31.86 2.52
764 776 6.183360 CCGACAGAACCCAGATTTCTATTTTC 60.183 42.308 0.00 0.00 31.86 2.29
765 777 5.648092 CCGACAGAACCCAGATTTCTATTTT 59.352 40.000 0.00 0.00 31.86 1.82
766 778 5.186198 CCGACAGAACCCAGATTTCTATTT 58.814 41.667 0.00 0.00 31.86 1.40
767 779 4.384208 CCCGACAGAACCCAGATTTCTATT 60.384 45.833 0.00 0.00 31.86 1.73
768 780 3.134804 CCCGACAGAACCCAGATTTCTAT 59.865 47.826 0.00 0.00 31.86 1.98
769 781 2.500098 CCCGACAGAACCCAGATTTCTA 59.500 50.000 0.00 0.00 31.86 2.10
770 782 1.279271 CCCGACAGAACCCAGATTTCT 59.721 52.381 0.00 0.00 33.38 2.52
771 783 1.679032 CCCCGACAGAACCCAGATTTC 60.679 57.143 0.00 0.00 0.00 2.17
772 784 0.328258 CCCCGACAGAACCCAGATTT 59.672 55.000 0.00 0.00 0.00 2.17
773 785 0.546747 TCCCCGACAGAACCCAGATT 60.547 55.000 0.00 0.00 0.00 2.40
774 786 0.546747 TTCCCCGACAGAACCCAGAT 60.547 55.000 0.00 0.00 0.00 2.90
775 787 0.546747 ATTCCCCGACAGAACCCAGA 60.547 55.000 0.00 0.00 0.00 3.86
776 788 0.328258 AATTCCCCGACAGAACCCAG 59.672 55.000 0.00 0.00 0.00 4.45
777 789 0.326927 GAATTCCCCGACAGAACCCA 59.673 55.000 0.00 0.00 0.00 4.51
778 790 0.326927 TGAATTCCCCGACAGAACCC 59.673 55.000 2.27 0.00 0.00 4.11
779 791 1.739067 CTGAATTCCCCGACAGAACC 58.261 55.000 2.27 0.00 32.90 3.62
780 792 1.087501 GCTGAATTCCCCGACAGAAC 58.912 55.000 2.27 0.00 32.90 3.01
781 793 0.690192 TGCTGAATTCCCCGACAGAA 59.310 50.000 2.27 0.00 32.90 3.02
782 794 0.250234 CTGCTGAATTCCCCGACAGA 59.750 55.000 2.27 0.00 32.90 3.41
783 795 0.036010 ACTGCTGAATTCCCCGACAG 60.036 55.000 2.27 5.96 0.00 3.51
784 796 1.271856 TACTGCTGAATTCCCCGACA 58.728 50.000 2.27 0.00 0.00 4.35
785 797 2.622064 ATACTGCTGAATTCCCCGAC 57.378 50.000 2.27 0.00 0.00 4.79
786 798 3.035363 TGTATACTGCTGAATTCCCCGA 58.965 45.455 2.27 0.00 0.00 5.14
787 799 3.469008 TGTATACTGCTGAATTCCCCG 57.531 47.619 2.27 0.00 0.00 5.73
788 800 6.115448 ACTATGTATACTGCTGAATTCCCC 57.885 41.667 2.27 0.00 0.00 4.81
789 801 6.166982 GGACTATGTATACTGCTGAATTCCC 58.833 44.000 2.27 0.00 0.00 3.97
790 802 6.166982 GGGACTATGTATACTGCTGAATTCC 58.833 44.000 2.27 0.02 0.00 3.01
791 803 5.864474 CGGGACTATGTATACTGCTGAATTC 59.136 44.000 4.17 0.00 0.00 2.17
792 804 5.304614 ACGGGACTATGTATACTGCTGAATT 59.695 40.000 4.17 0.00 0.00 2.17
793 805 4.833380 ACGGGACTATGTATACTGCTGAAT 59.167 41.667 4.17 0.00 0.00 2.57
794 806 4.212716 ACGGGACTATGTATACTGCTGAA 58.787 43.478 4.17 0.00 0.00 3.02
795 807 3.819337 GACGGGACTATGTATACTGCTGA 59.181 47.826 4.17 0.00 0.00 4.26
796 808 3.365064 CGACGGGACTATGTATACTGCTG 60.365 52.174 4.17 0.00 0.00 4.41
797 809 2.812591 CGACGGGACTATGTATACTGCT 59.187 50.000 4.17 0.00 0.00 4.24
798 810 2.810274 TCGACGGGACTATGTATACTGC 59.190 50.000 4.17 0.00 0.00 4.40
799 811 4.063689 ACTCGACGGGACTATGTATACTG 58.936 47.826 0.00 0.00 0.00 2.74
800 812 4.314121 GACTCGACGGGACTATGTATACT 58.686 47.826 0.00 0.00 0.00 2.12
801 813 3.122613 CGACTCGACGGGACTATGTATAC 59.877 52.174 0.00 0.00 0.00 1.47
802 814 3.005791 TCGACTCGACGGGACTATGTATA 59.994 47.826 0.00 0.00 0.00 1.47
803 815 2.141517 CGACTCGACGGGACTATGTAT 58.858 52.381 0.00 0.00 0.00 2.29
804 816 1.136891 TCGACTCGACGGGACTATGTA 59.863 52.381 0.00 0.00 0.00 2.29
805 817 0.107993 TCGACTCGACGGGACTATGT 60.108 55.000 0.00 0.00 0.00 2.29
806 818 0.582482 CTCGACTCGACGGGACTATG 59.418 60.000 0.00 0.00 35.62 2.23
807 819 0.177604 ACTCGACTCGACGGGACTAT 59.822 55.000 0.00 0.00 37.20 2.12
808 820 0.036952 AACTCGACTCGACGGGACTA 60.037 55.000 0.00 0.00 37.20 2.59
809 821 1.297456 GAACTCGACTCGACGGGACT 61.297 60.000 0.00 0.00 37.20 3.85
810 822 1.134281 GAACTCGACTCGACGGGAC 59.866 63.158 0.00 0.00 37.20 4.46
811 823 2.037136 GGAACTCGACTCGACGGGA 61.037 63.158 0.00 0.00 37.20 5.14
812 824 2.039405 AGGAACTCGACTCGACGGG 61.039 63.158 0.00 0.00 39.85 5.28
813 825 1.134901 CAGGAACTCGACTCGACGG 59.865 63.158 0.00 0.00 34.60 4.79
814 826 0.237761 AACAGGAACTCGACTCGACG 59.762 55.000 0.00 0.00 34.60 5.12
815 827 1.266175 TCAACAGGAACTCGACTCGAC 59.734 52.381 0.00 0.00 34.60 4.20
816 828 1.601166 TCAACAGGAACTCGACTCGA 58.399 50.000 0.29 0.29 34.60 4.04
817 829 2.254459 CATCAACAGGAACTCGACTCG 58.746 52.381 0.00 0.00 34.60 4.18
818 830 2.989840 CACATCAACAGGAACTCGACTC 59.010 50.000 0.00 0.00 34.60 3.36
819 831 2.365617 ACACATCAACAGGAACTCGACT 59.634 45.455 0.00 0.00 34.60 4.18
820 832 2.731976 GACACATCAACAGGAACTCGAC 59.268 50.000 0.00 0.00 34.60 4.20
821 833 2.628178 AGACACATCAACAGGAACTCGA 59.372 45.455 0.00 0.00 34.60 4.04
822 834 3.032017 AGACACATCAACAGGAACTCG 57.968 47.619 0.00 0.00 34.60 4.18
823 835 4.499183 CCTAGACACATCAACAGGAACTC 58.501 47.826 0.00 0.00 34.60 3.01
824 836 3.307059 GCCTAGACACATCAACAGGAACT 60.307 47.826 0.00 0.00 43.88 3.01
825 837 3.003480 GCCTAGACACATCAACAGGAAC 58.997 50.000 0.00 0.00 0.00 3.62
826 838 2.027192 GGCCTAGACACATCAACAGGAA 60.027 50.000 0.00 0.00 0.00 3.36
827 839 1.555075 GGCCTAGACACATCAACAGGA 59.445 52.381 0.00 0.00 0.00 3.86
828 840 1.740380 CGGCCTAGACACATCAACAGG 60.740 57.143 0.00 0.00 0.00 4.00
829 841 1.645034 CGGCCTAGACACATCAACAG 58.355 55.000 0.00 0.00 0.00 3.16
830 842 0.391130 GCGGCCTAGACACATCAACA 60.391 55.000 0.00 0.00 0.00 3.33
831 843 0.108138 AGCGGCCTAGACACATCAAC 60.108 55.000 0.00 0.00 0.00 3.18
832 844 0.108186 CAGCGGCCTAGACACATCAA 60.108 55.000 0.00 0.00 0.00 2.57
833 845 1.517361 CAGCGGCCTAGACACATCA 59.483 57.895 0.00 0.00 0.00 3.07
838 850 1.826340 TTCAAGCAGCGGCCTAGACA 61.826 55.000 4.82 0.00 42.56 3.41
848 860 2.031437 GGATCGATTCTGTTCAAGCAGC 59.969 50.000 0.00 0.00 36.49 5.25
865 877 0.593263 ATAACGTCGCCGAACGGATC 60.593 55.000 17.63 5.27 46.72 3.36
866 878 0.662619 TATAACGTCGCCGAACGGAT 59.337 50.000 17.63 2.33 46.72 4.18
867 879 0.449786 TTATAACGTCGCCGAACGGA 59.550 50.000 17.63 0.00 46.72 4.69
868 880 0.567509 GTTATAACGTCGCCGAACGG 59.432 55.000 9.00 9.00 46.72 4.44
874 886 0.720590 TTTGCGGTTATAACGTCGCC 59.279 50.000 26.02 14.63 46.51 5.54
879 891 4.145997 GTGACAAGTTTGCGGTTATAACG 58.854 43.478 9.46 6.35 0.00 3.18
880 892 4.023878 TGGTGACAAGTTTGCGGTTATAAC 60.024 41.667 7.09 7.09 37.44 1.89
881 893 4.135306 TGGTGACAAGTTTGCGGTTATAA 58.865 39.130 0.00 0.00 37.44 0.98
898 910 5.941647 GCTTGGGTACTTTTTATACTGGTGA 59.058 40.000 0.00 0.00 0.00 4.02
927 971 7.178097 AGCAGAGATGCTAGTATGATCACATAA 59.822 37.037 0.00 0.00 44.28 1.90
933 977 5.782047 ACAAGCAGAGATGCTAGTATGATC 58.218 41.667 2.72 0.00 45.54 2.92
939 984 2.830923 AGTGACAAGCAGAGATGCTAGT 59.169 45.455 2.72 0.00 45.54 2.57
940 985 3.446799 GAGTGACAAGCAGAGATGCTAG 58.553 50.000 2.72 0.00 45.54 3.42
941 986 2.167281 GGAGTGACAAGCAGAGATGCTA 59.833 50.000 2.72 0.00 45.54 3.49
966 1011 1.107114 ATCGCTCCTGTGTCACCTAG 58.893 55.000 0.00 0.00 0.00 3.02
967 1012 2.430248 TATCGCTCCTGTGTCACCTA 57.570 50.000 0.00 0.00 0.00 3.08
968 1013 1.683917 GATATCGCTCCTGTGTCACCT 59.316 52.381 0.00 0.00 0.00 4.00
969 1014 1.409064 TGATATCGCTCCTGTGTCACC 59.591 52.381 0.00 0.00 0.00 4.02
970 1015 2.871182 TGATATCGCTCCTGTGTCAC 57.129 50.000 0.00 0.00 0.00 3.67
971 1016 2.101415 CCTTGATATCGCTCCTGTGTCA 59.899 50.000 0.00 0.00 0.00 3.58
976 1021 1.506493 GCACCTTGATATCGCTCCTG 58.494 55.000 0.00 0.00 0.00 3.86
989 1034 0.038166 ATTGTCCATGACGGCACCTT 59.962 50.000 0.00 0.00 34.95 3.50
1041 1087 0.974010 AGTATTGGGAGGACGGCGAA 60.974 55.000 16.62 0.00 0.00 4.70
1058 1104 4.250305 GTGTGCCCACCGTGGAGT 62.250 66.667 19.81 0.00 40.96 3.85
1072 1118 2.483876 CACAAACTCGATCACCTGTGT 58.516 47.619 0.00 0.00 31.65 3.72
1073 1119 1.195448 GCACAAACTCGATCACCTGTG 59.805 52.381 0.00 8.20 37.74 3.66
1081 1127 1.675641 GCAGGGGCACAAACTCGAT 60.676 57.895 0.00 0.00 40.72 3.59
1089 1135 3.535629 CTCGTGAAGCAGGGGCACA 62.536 63.158 0.00 0.00 44.61 4.57
1453 1511 1.701031 TTGTTGGCCTCGTCCTCCAA 61.701 55.000 3.32 0.00 37.52 3.53
1455 1513 1.376037 CTTGTTGGCCTCGTCCTCC 60.376 63.158 3.32 0.00 0.00 4.30
1548 1624 3.621805 ACCATCCGCACGTCCACA 61.622 61.111 0.00 0.00 0.00 4.17
1717 1793 2.203167 CTGCATCGAGGCTGGCAT 60.203 61.111 23.78 0.00 35.45 4.40
1779 1855 3.958147 TTAGGCGCTGTCCTGCTGC 62.958 63.158 7.64 0.00 37.01 5.25
1780 1856 2.103042 GTTAGGCGCTGTCCTGCTG 61.103 63.158 7.64 0.00 37.01 4.41
1781 1857 2.266055 GTTAGGCGCTGTCCTGCT 59.734 61.111 7.64 0.00 37.01 4.24
1782 1858 2.820037 GGTTAGGCGCTGTCCTGC 60.820 66.667 7.64 0.00 37.01 4.85
1783 1859 2.509336 CGGTTAGGCGCTGTCCTG 60.509 66.667 7.64 0.00 37.01 3.86
1784 1860 4.452733 GCGGTTAGGCGCTGTCCT 62.453 66.667 7.64 0.00 40.21 3.85
1785 1861 2.955751 CTAGCGGTTAGGCGCTGTCC 62.956 65.000 7.64 4.36 41.85 4.02
1786 1862 1.589196 CTAGCGGTTAGGCGCTGTC 60.589 63.158 7.64 0.00 41.85 3.51
1787 1863 2.494918 CTAGCGGTTAGGCGCTGT 59.505 61.111 7.64 0.00 41.85 4.40
1797 1873 3.470888 AATGCTCCGGCTAGCGGT 61.471 61.111 19.60 0.00 45.85 5.68
1849 1929 7.396339 AGGAAACCAAATTAGGGAAGATGTTAC 59.604 37.037 3.24 0.00 0.00 2.50
1857 1937 3.831911 CAGCAGGAAACCAAATTAGGGAA 59.168 43.478 3.24 0.00 0.00 3.97
1913 1997 3.130280 TCTGTGACTACACCGTCTACA 57.870 47.619 0.00 0.00 45.40 2.74
1999 2103 7.441157 ACTTCTCAAGTATTTGAATGACGTCAA 59.559 33.333 24.13 5.74 42.48 3.18
2074 2178 4.441792 GGGACTGCAAAGTTTCATTTTGT 58.558 39.130 0.00 0.00 37.73 2.83
2424 5161 4.339814 GGATCAAGAAGGAGATACGTCTGT 59.660 45.833 0.00 0.00 33.97 3.41
2471 5208 0.592637 CAGACATGCGCACCAAAAGA 59.407 50.000 14.90 0.00 0.00 2.52
2556 5307 3.819902 GGGAAGATTCTCTGATCAATGGC 59.180 47.826 0.00 0.00 0.00 4.40
2625 5377 1.995484 AGCGATGATCGAACAGTTGTG 59.005 47.619 20.25 0.00 43.74 3.33
2632 5384 2.247437 GCCCCAGCGATGATCGAAC 61.247 63.158 20.25 1.25 43.74 3.95
2638 5390 1.675310 CTGTTTGCCCCAGCGATGA 60.675 57.895 0.06 0.00 44.31 2.92
2657 5409 2.752354 TGTTCTTTTGGGTGTGACTGTG 59.248 45.455 0.00 0.00 0.00 3.66
2659 5411 4.654091 ATTGTTCTTTTGGGTGTGACTG 57.346 40.909 0.00 0.00 0.00 3.51
2705 5457 1.443872 GTCGATCCGACGCTGTTGT 60.444 57.895 3.69 0.00 46.56 3.32
2715 5467 1.340465 CGTCGCTTTTGTCGATCCG 59.660 57.895 0.00 0.00 38.29 4.18
2753 5505 1.651737 TGGTGGAATTCTTCGGAGGA 58.348 50.000 5.23 0.00 0.00 3.71
2760 5512 4.467769 CATAGGAGCATGGTGGAATTCTT 58.532 43.478 0.00 0.00 0.00 2.52
2773 5525 2.324014 AATTCGGCGGCATAGGAGCA 62.324 55.000 10.53 0.00 35.83 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.