Multiple sequence alignment - TraesCS1D01G374700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G374700 chr1D 100.000 2915 0 0 1 2915 452004245 452001331 0.000000e+00 5384.0
1 TraesCS1D01G374700 chr1D 100.000 499 0 0 3188 3686 452001058 452000560 0.000000e+00 922.0
2 TraesCS1D01G374700 chr1A 90.359 1867 109 16 895 2719 546800846 546799009 0.000000e+00 2385.0
3 TraesCS1D01G374700 chr1A 83.570 846 136 3 1880 2724 521941387 521942230 0.000000e+00 789.0
4 TraesCS1D01G374700 chr1A 88.013 317 31 2 3375 3686 546797464 546797150 5.820000e-98 368.0
5 TraesCS1D01G374700 chr1A 92.361 144 5 5 2759 2902 546799012 546798875 2.240000e-47 200.0
6 TraesCS1D01G374700 chr1A 87.692 65 5 3 1642 1703 568729557 568729493 5.110000e-09 73.1
7 TraesCS1D01G374700 chr1B 95.333 1050 38 5 1856 2905 621988061 621987023 0.000000e+00 1657.0
8 TraesCS1D01G374700 chr1B 93.735 814 37 5 960 1768 621988955 621988151 0.000000e+00 1208.0
9 TraesCS1D01G374700 chr1B 91.069 683 49 10 259 930 621989634 621988953 0.000000e+00 913.0
10 TraesCS1D01G374700 chr1B 90.215 511 37 5 3188 3686 621986980 621986471 0.000000e+00 654.0
11 TraesCS1D01G374700 chr1B 93.636 220 12 1 259 478 621991995 621991778 9.870000e-86 327.0
12 TraesCS1D01G374700 chr1B 89.062 64 6 1 1800 1863 621988151 621988089 1.100000e-10 78.7
13 TraesCS1D01G374700 chr1B 90.385 52 5 0 1642 1693 659724367 659724418 6.610000e-08 69.4
14 TraesCS1D01G374700 chr4D 82.219 793 135 6 1866 2655 449461585 449462374 0.000000e+00 678.0
15 TraesCS1D01G374700 chr4D 78.038 469 99 2 1246 1712 449458861 449459327 3.600000e-75 292.0
16 TraesCS1D01G374700 chr4D 97.647 85 1 1 1 84 281177172 281177256 1.070000e-30 145.0
17 TraesCS1D01G374700 chr4D 97.619 84 1 1 1 84 9296616 9296698 3.840000e-30 143.0
18 TraesCS1D01G374700 chr4A 82.010 806 133 12 1862 2661 17388116 17387317 0.000000e+00 675.0
19 TraesCS1D01G374700 chr4A 78.678 469 96 2 1246 1712 17389876 17389410 3.580000e-80 309.0
20 TraesCS1D01G374700 chr4B 81.566 792 142 4 1866 2655 562055365 562056154 0.000000e+00 651.0
21 TraesCS1D01G374700 chr4B 79.104 469 94 2 1246 1712 562052472 562052938 1.650000e-83 320.0
22 TraesCS1D01G374700 chr6B 78.536 806 141 23 1864 2659 720952894 720952111 5.500000e-138 501.0
23 TraesCS1D01G374700 chr6D 78.412 806 142 23 1864 2659 470382748 470381965 2.560000e-136 496.0
24 TraesCS1D01G374700 chr6D 95.604 91 2 2 1 90 162106594 162106505 1.070000e-30 145.0
25 TraesCS1D01G374700 chr6A 79.772 702 124 15 1864 2556 615131604 615132296 9.200000e-136 494.0
26 TraesCS1D01G374700 chr7D 97.647 85 1 1 1 85 274690072 274690155 1.070000e-30 145.0
27 TraesCS1D01G374700 chr7D 97.619 84 1 1 1 84 184379900 184379818 3.840000e-30 143.0
28 TraesCS1D01G374700 chr7B 97.647 85 1 1 1 85 18487367 18487450 1.070000e-30 145.0
29 TraesCS1D01G374700 chr2D 97.647 85 1 1 1 85 18207055 18206972 1.070000e-30 145.0
30 TraesCS1D01G374700 chr2D 93.478 92 6 0 1 92 5377914 5378005 1.790000e-28 137.0
31 TraesCS1D01G374700 chr2D 82.031 128 15 6 82 204 330179154 330179030 6.510000e-18 102.0
32 TraesCS1D01G374700 chr3D 93.684 95 5 1 1 94 174728182 174728088 1.380000e-29 141.0
33 TraesCS1D01G374700 chr3A 100.000 30 0 0 3614 3643 700236441 700236412 5.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G374700 chr1D 452000560 452004245 3685 True 3153.000000 5384 100.000000 1 3686 2 chr1D.!!$R1 3685
1 TraesCS1D01G374700 chr1A 546797150 546800846 3696 True 984.333333 2385 90.244333 895 3686 3 chr1A.!!$R2 2791
2 TraesCS1D01G374700 chr1A 521941387 521942230 843 False 789.000000 789 83.570000 1880 2724 1 chr1A.!!$F1 844
3 TraesCS1D01G374700 chr1B 621986471 621991995 5524 True 806.283333 1657 92.175000 259 3686 6 chr1B.!!$R1 3427
4 TraesCS1D01G374700 chr4D 449458861 449462374 3513 False 485.000000 678 80.128500 1246 2655 2 chr4D.!!$F3 1409
5 TraesCS1D01G374700 chr4A 17387317 17389876 2559 True 492.000000 675 80.344000 1246 2661 2 chr4A.!!$R1 1415
6 TraesCS1D01G374700 chr4B 562052472 562056154 3682 False 485.500000 651 80.335000 1246 2655 2 chr4B.!!$F1 1409
7 TraesCS1D01G374700 chr6B 720952111 720952894 783 True 501.000000 501 78.536000 1864 2659 1 chr6B.!!$R1 795
8 TraesCS1D01G374700 chr6D 470381965 470382748 783 True 496.000000 496 78.412000 1864 2659 1 chr6D.!!$R2 795
9 TraesCS1D01G374700 chr6A 615131604 615132296 692 False 494.000000 494 79.772000 1864 2556 1 chr6A.!!$F1 692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.037975 GCCAGCCACCAACATTTCTG 60.038 55.0 0.0 0.00 0.0 3.02 F
217 218 0.037975 CCAGCCACCAACATTTCTGC 60.038 55.0 0.0 0.00 0.0 4.26 F
220 221 0.037975 GCCACCAACATTTCTGCCTG 60.038 55.0 0.0 0.00 0.0 4.85 F
801 3164 0.104462 TGCAGCCCCCTATCACCTAT 60.104 55.0 0.0 0.00 0.0 2.57 F
1775 4274 0.110688 CGTGTGAGCCATGAACAACG 60.111 55.0 0.0 1.73 31.2 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1133 3545 0.106708 GTCAAGTGACAGCAGGGACA 59.893 55.0 6.57 0.0 44.18 4.02 R
1186 3598 0.179073 GCTACAGACACGGCCATGAT 60.179 55.0 5.45 0.0 0.00 2.45 R
1782 4281 0.248215 GGAAATCAGGATTGTGCGCG 60.248 55.0 0.00 0.0 0.00 6.86 R
1783 4282 1.098050 AGGAAATCAGGATTGTGCGC 58.902 50.0 0.00 0.0 0.00 6.09 R
3601 9687 0.241749 AGCCAACATCAATGCACACG 59.758 50.0 0.00 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.481954 GTAGATTCACTCATTTTGTTCCGT 57.518 37.500 0.00 0.00 0.00 4.69
24 25 7.591006 GTAGATTCACTCATTTTGTTCCGTA 57.409 36.000 0.00 0.00 0.00 4.02
25 26 8.197988 GTAGATTCACTCATTTTGTTCCGTAT 57.802 34.615 0.00 0.00 0.00 3.06
26 27 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
27 28 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
28 29 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
29 30 7.731882 TTCACTCATTTTGTTCCGTATGTAA 57.268 32.000 0.00 0.00 0.00 2.41
30 31 7.915293 TCACTCATTTTGTTCCGTATGTAAT 57.085 32.000 0.00 0.00 0.00 1.89
31 32 7.970384 TCACTCATTTTGTTCCGTATGTAATC 58.030 34.615 0.00 0.00 0.00 1.75
32 33 7.604545 TCACTCATTTTGTTCCGTATGTAATCA 59.395 33.333 0.00 0.00 0.00 2.57
33 34 7.692291 CACTCATTTTGTTCCGTATGTAATCAC 59.308 37.037 0.00 0.00 0.00 3.06
34 35 7.079182 TCATTTTGTTCCGTATGTAATCACC 57.921 36.000 0.00 0.00 0.00 4.02
35 36 6.655425 TCATTTTGTTCCGTATGTAATCACCA 59.345 34.615 0.00 0.00 0.00 4.17
36 37 7.338196 TCATTTTGTTCCGTATGTAATCACCAT 59.662 33.333 0.00 0.00 0.00 3.55
37 38 7.455641 TTTTGTTCCGTATGTAATCACCATT 57.544 32.000 0.00 0.00 0.00 3.16
38 39 7.455641 TTTGTTCCGTATGTAATCACCATTT 57.544 32.000 0.00 0.00 0.00 2.32
39 40 6.429791 TGTTCCGTATGTAATCACCATTTG 57.570 37.500 0.00 0.00 0.00 2.32
40 41 6.174049 TGTTCCGTATGTAATCACCATTTGA 58.826 36.000 0.00 0.00 39.11 2.69
41 42 6.655425 TGTTCCGTATGTAATCACCATTTGAA 59.345 34.615 0.00 0.00 37.92 2.69
42 43 7.175119 TGTTCCGTATGTAATCACCATTTGAAA 59.825 33.333 0.00 0.00 37.92 2.69
43 44 7.079182 TCCGTATGTAATCACCATTTGAAAC 57.921 36.000 0.00 0.00 37.92 2.78
44 45 6.094325 TCCGTATGTAATCACCATTTGAAACC 59.906 38.462 0.00 0.00 37.92 3.27
45 46 6.094881 CCGTATGTAATCACCATTTGAAACCT 59.905 38.462 0.00 0.00 37.92 3.50
46 47 7.186804 CGTATGTAATCACCATTTGAAACCTC 58.813 38.462 0.00 0.00 37.92 3.85
47 48 7.065803 CGTATGTAATCACCATTTGAAACCTCT 59.934 37.037 0.00 0.00 37.92 3.69
48 49 9.391006 GTATGTAATCACCATTTGAAACCTCTA 57.609 33.333 0.00 0.00 37.92 2.43
49 50 7.921786 TGTAATCACCATTTGAAACCTCTAG 57.078 36.000 0.00 0.00 37.92 2.43
50 51 7.685481 TGTAATCACCATTTGAAACCTCTAGA 58.315 34.615 0.00 0.00 37.92 2.43
51 52 8.160765 TGTAATCACCATTTGAAACCTCTAGAA 58.839 33.333 0.00 0.00 37.92 2.10
52 53 9.010029 GTAATCACCATTTGAAACCTCTAGAAA 57.990 33.333 0.00 0.00 37.92 2.52
53 54 7.693969 ATCACCATTTGAAACCTCTAGAAAG 57.306 36.000 0.00 0.00 37.92 2.62
54 55 6.837312 TCACCATTTGAAACCTCTAGAAAGA 58.163 36.000 0.00 0.00 0.00 2.52
55 56 6.710744 TCACCATTTGAAACCTCTAGAAAGAC 59.289 38.462 0.00 0.00 0.00 3.01
56 57 6.486657 CACCATTTGAAACCTCTAGAAAGACA 59.513 38.462 0.00 0.00 0.00 3.41
57 58 7.013274 CACCATTTGAAACCTCTAGAAAGACAA 59.987 37.037 0.00 0.00 0.00 3.18
58 59 7.559897 ACCATTTGAAACCTCTAGAAAGACAAA 59.440 33.333 0.00 4.41 0.00 2.83
59 60 8.579863 CCATTTGAAACCTCTAGAAAGACAAAT 58.420 33.333 13.64 13.64 36.38 2.32
71 72 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
72 73 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
73 74 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
74 75 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
75 76 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
76 77 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
77 78 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
78 79 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
79 80 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
80 81 7.072076 ACAAATATTTAGGAACGGAGGGAGTAT 59.928 37.037 0.00 0.00 0.00 2.12
81 82 6.854091 ATATTTAGGAACGGAGGGAGTATC 57.146 41.667 0.00 0.00 0.00 2.24
82 83 3.675348 TTAGGAACGGAGGGAGTATCA 57.325 47.619 0.00 0.00 36.25 2.15
83 84 2.777459 AGGAACGGAGGGAGTATCAT 57.223 50.000 0.00 0.00 36.25 2.45
84 85 2.320781 AGGAACGGAGGGAGTATCATG 58.679 52.381 0.00 0.00 36.25 3.07
85 86 1.270358 GGAACGGAGGGAGTATCATGC 60.270 57.143 0.00 0.00 36.25 4.06
86 87 1.412710 GAACGGAGGGAGTATCATGCA 59.587 52.381 0.00 0.00 36.25 3.96
87 88 1.722034 ACGGAGGGAGTATCATGCAT 58.278 50.000 0.00 0.00 36.25 3.96
88 89 1.345741 ACGGAGGGAGTATCATGCATG 59.654 52.381 21.07 21.07 36.25 4.06
89 90 1.818642 GGAGGGAGTATCATGCATGC 58.181 55.000 22.25 11.82 36.25 4.06
90 91 1.350351 GGAGGGAGTATCATGCATGCT 59.650 52.381 22.25 15.24 36.25 3.79
91 92 2.224719 GGAGGGAGTATCATGCATGCTT 60.225 50.000 22.25 10.16 36.25 3.91
92 93 2.812591 GAGGGAGTATCATGCATGCTTG 59.187 50.000 23.82 23.82 36.25 4.01
93 94 1.268899 GGGAGTATCATGCATGCTTGC 59.731 52.381 24.71 17.19 43.48 4.01
94 95 1.069432 GGAGTATCATGCATGCTTGCG 60.069 52.381 24.71 8.92 45.33 4.85
95 96 1.869132 GAGTATCATGCATGCTTGCGA 59.131 47.619 24.71 13.98 43.68 5.10
96 97 2.349249 GAGTATCATGCATGCTTGCGAC 60.349 50.000 24.71 22.34 43.68 5.19
97 98 4.835304 GAGTATCATGCATGCTTGCGACA 61.835 47.826 24.71 11.10 43.68 4.35
98 99 6.814015 GAGTATCATGCATGCTTGCGACAC 62.814 50.000 24.71 18.61 43.68 3.67
103 104 1.818850 GCATGCTTGCGACACTAATG 58.181 50.000 11.37 0.00 39.49 1.90
104 105 1.818850 CATGCTTGCGACACTAATGC 58.181 50.000 0.00 0.00 0.00 3.56
105 106 1.130938 CATGCTTGCGACACTAATGCA 59.869 47.619 0.00 0.00 36.72 3.96
106 107 1.233919 TGCTTGCGACACTAATGCAA 58.766 45.000 0.00 0.00 45.54 4.08
107 108 1.606189 TGCTTGCGACACTAATGCAAA 59.394 42.857 0.00 0.00 46.77 3.68
108 109 1.978782 GCTTGCGACACTAATGCAAAC 59.021 47.619 0.00 0.00 46.77 2.93
109 110 2.604373 GCTTGCGACACTAATGCAAACA 60.604 45.455 0.00 0.00 46.77 2.83
110 111 3.825308 CTTGCGACACTAATGCAAACAT 58.175 40.909 0.00 0.00 46.77 2.71
111 112 3.469899 TGCGACACTAATGCAAACATC 57.530 42.857 0.00 0.00 34.62 3.06
112 113 3.073678 TGCGACACTAATGCAAACATCT 58.926 40.909 0.00 0.00 34.62 2.90
113 114 4.249661 TGCGACACTAATGCAAACATCTA 58.750 39.130 0.00 0.00 34.62 1.98
114 115 4.875536 TGCGACACTAATGCAAACATCTAT 59.124 37.500 0.00 0.00 34.62 1.98
115 116 6.045955 TGCGACACTAATGCAAACATCTATA 58.954 36.000 0.00 0.00 34.62 1.31
116 117 6.536941 TGCGACACTAATGCAAACATCTATAA 59.463 34.615 0.00 0.00 34.62 0.98
117 118 7.065204 TGCGACACTAATGCAAACATCTATAAA 59.935 33.333 0.00 0.00 34.62 1.40
118 119 7.908082 GCGACACTAATGCAAACATCTATAAAA 59.092 33.333 0.00 0.00 34.62 1.52
119 120 9.767684 CGACACTAATGCAAACATCTATAAAAA 57.232 29.630 0.00 0.00 34.62 1.94
169 170 9.575868 TTGATATTTTTAGTTACTGTTCACCCA 57.424 29.630 0.00 0.00 0.00 4.51
170 171 9.226606 TGATATTTTTAGTTACTGTTCACCCAG 57.773 33.333 0.00 0.00 38.45 4.45
171 172 6.894339 ATTTTTAGTTACTGTTCACCCAGG 57.106 37.500 0.00 0.00 36.75 4.45
172 173 5.633655 TTTTAGTTACTGTTCACCCAGGA 57.366 39.130 0.00 0.00 36.75 3.86
173 174 4.884668 TTAGTTACTGTTCACCCAGGAG 57.115 45.455 0.00 0.00 36.75 3.69
174 175 1.348036 AGTTACTGTTCACCCAGGAGC 59.652 52.381 0.00 0.00 36.75 4.70
175 176 1.071699 GTTACTGTTCACCCAGGAGCA 59.928 52.381 0.00 0.00 36.75 4.26
176 177 1.656587 TACTGTTCACCCAGGAGCAT 58.343 50.000 0.00 0.00 36.75 3.79
177 178 1.656587 ACTGTTCACCCAGGAGCATA 58.343 50.000 0.00 0.00 36.75 3.14
178 179 2.200081 ACTGTTCACCCAGGAGCATAT 58.800 47.619 0.00 0.00 36.75 1.78
179 180 2.092753 ACTGTTCACCCAGGAGCATATG 60.093 50.000 0.00 0.00 36.75 1.78
180 181 1.312815 GTTCACCCAGGAGCATATGC 58.687 55.000 20.36 20.36 42.49 3.14
191 192 3.239861 GCATATGCTCCTGGTAGCC 57.760 57.895 20.64 0.00 42.05 3.93
192 193 0.397941 GCATATGCTCCTGGTAGCCA 59.602 55.000 20.64 4.61 42.05 4.75
193 194 1.202806 GCATATGCTCCTGGTAGCCAA 60.203 52.381 20.64 4.61 42.05 4.52
194 195 2.749466 GCATATGCTCCTGGTAGCCAAA 60.749 50.000 20.64 2.72 42.05 3.28
195 196 3.554934 CATATGCTCCTGGTAGCCAAAA 58.445 45.455 13.24 0.00 42.05 2.44
196 197 2.834638 ATGCTCCTGGTAGCCAAAAT 57.165 45.000 13.24 1.19 42.05 1.82
197 198 1.838112 TGCTCCTGGTAGCCAAAATG 58.162 50.000 13.24 0.00 42.05 2.32
198 199 0.457443 GCTCCTGGTAGCCAAAATGC 59.543 55.000 6.82 0.00 36.45 3.56
199 200 1.106285 CTCCTGGTAGCCAAAATGCC 58.894 55.000 0.00 0.00 30.80 4.40
200 201 0.407528 TCCTGGTAGCCAAAATGCCA 59.592 50.000 0.00 0.00 30.80 4.92
201 202 0.819582 CCTGGTAGCCAAAATGCCAG 59.180 55.000 3.39 3.39 46.64 4.85
202 203 0.174162 CTGGTAGCCAAAATGCCAGC 59.826 55.000 0.00 0.00 42.47 4.85
203 204 1.257055 TGGTAGCCAAAATGCCAGCC 61.257 55.000 0.00 0.00 0.00 4.85
204 205 1.257055 GGTAGCCAAAATGCCAGCCA 61.257 55.000 0.00 0.00 0.00 4.75
205 206 0.108662 GTAGCCAAAATGCCAGCCAC 60.109 55.000 0.00 0.00 0.00 5.01
206 207 1.257055 TAGCCAAAATGCCAGCCACC 61.257 55.000 0.00 0.00 0.00 4.61
207 208 2.881528 GCCAAAATGCCAGCCACCA 61.882 57.895 0.00 0.00 0.00 4.17
208 209 1.753470 CCAAAATGCCAGCCACCAA 59.247 52.632 0.00 0.00 0.00 3.67
209 210 0.603439 CCAAAATGCCAGCCACCAAC 60.603 55.000 0.00 0.00 0.00 3.77
210 211 0.106335 CAAAATGCCAGCCACCAACA 59.894 50.000 0.00 0.00 0.00 3.33
211 212 1.058284 AAAATGCCAGCCACCAACAT 58.942 45.000 0.00 0.00 0.00 2.71
212 213 1.058284 AAATGCCAGCCACCAACATT 58.942 45.000 0.00 0.00 32.53 2.71
213 214 1.058284 AATGCCAGCCACCAACATTT 58.942 45.000 0.00 0.00 0.00 2.32
214 215 0.609662 ATGCCAGCCACCAACATTTC 59.390 50.000 0.00 0.00 0.00 2.17
215 216 0.469705 TGCCAGCCACCAACATTTCT 60.470 50.000 0.00 0.00 0.00 2.52
216 217 0.037975 GCCAGCCACCAACATTTCTG 60.038 55.000 0.00 0.00 0.00 3.02
217 218 0.037975 CCAGCCACCAACATTTCTGC 60.038 55.000 0.00 0.00 0.00 4.26
218 219 0.037975 CAGCCACCAACATTTCTGCC 60.038 55.000 0.00 0.00 0.00 4.85
219 220 0.178953 AGCCACCAACATTTCTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
220 221 0.037975 GCCACCAACATTTCTGCCTG 60.038 55.000 0.00 0.00 0.00 4.85
221 222 1.331214 CCACCAACATTTCTGCCTGT 58.669 50.000 0.00 0.00 0.00 4.00
222 223 2.513753 CCACCAACATTTCTGCCTGTA 58.486 47.619 0.00 0.00 0.00 2.74
223 224 2.228822 CCACCAACATTTCTGCCTGTAC 59.771 50.000 0.00 0.00 0.00 2.90
224 225 2.884012 CACCAACATTTCTGCCTGTACA 59.116 45.455 0.00 0.00 0.00 2.90
225 226 3.317711 CACCAACATTTCTGCCTGTACAA 59.682 43.478 0.00 0.00 0.00 2.41
226 227 3.569701 ACCAACATTTCTGCCTGTACAAG 59.430 43.478 0.00 0.00 0.00 3.16
227 228 3.820467 CCAACATTTCTGCCTGTACAAGA 59.180 43.478 0.00 0.00 0.00 3.02
228 229 4.278170 CCAACATTTCTGCCTGTACAAGAA 59.722 41.667 4.67 4.67 0.00 2.52
229 230 5.221224 CCAACATTTCTGCCTGTACAAGAAA 60.221 40.000 18.73 18.73 33.78 2.52
230 231 5.438761 ACATTTCTGCCTGTACAAGAAAC 57.561 39.130 18.79 0.00 32.36 2.78
231 232 4.278419 ACATTTCTGCCTGTACAAGAAACC 59.722 41.667 18.79 0.00 32.36 3.27
232 233 3.569194 TTCTGCCTGTACAAGAAACCA 57.431 42.857 6.09 0.00 0.00 3.67
233 234 3.788227 TCTGCCTGTACAAGAAACCAT 57.212 42.857 0.00 0.00 0.00 3.55
234 235 3.674997 TCTGCCTGTACAAGAAACCATC 58.325 45.455 0.00 0.00 0.00 3.51
235 236 2.416547 CTGCCTGTACAAGAAACCATCG 59.583 50.000 0.00 0.00 0.00 3.84
236 237 2.037902 TGCCTGTACAAGAAACCATCGA 59.962 45.455 0.00 0.00 0.00 3.59
237 238 2.415512 GCCTGTACAAGAAACCATCGAC 59.584 50.000 0.00 0.00 0.00 4.20
238 239 3.000727 CCTGTACAAGAAACCATCGACC 58.999 50.000 0.00 0.00 0.00 4.79
239 240 3.556213 CCTGTACAAGAAACCATCGACCA 60.556 47.826 0.00 0.00 0.00 4.02
240 241 4.062293 CTGTACAAGAAACCATCGACCAA 58.938 43.478 0.00 0.00 0.00 3.67
241 242 4.452825 TGTACAAGAAACCATCGACCAAA 58.547 39.130 0.00 0.00 0.00 3.28
242 243 4.882427 TGTACAAGAAACCATCGACCAAAA 59.118 37.500 0.00 0.00 0.00 2.44
243 244 4.301637 ACAAGAAACCATCGACCAAAAC 57.698 40.909 0.00 0.00 0.00 2.43
244 245 3.951680 ACAAGAAACCATCGACCAAAACT 59.048 39.130 0.00 0.00 0.00 2.66
245 246 5.127491 ACAAGAAACCATCGACCAAAACTA 58.873 37.500 0.00 0.00 0.00 2.24
246 247 5.591067 ACAAGAAACCATCGACCAAAACTAA 59.409 36.000 0.00 0.00 0.00 2.24
247 248 6.095720 ACAAGAAACCATCGACCAAAACTAAA 59.904 34.615 0.00 0.00 0.00 1.85
248 249 6.702716 AGAAACCATCGACCAAAACTAAAA 57.297 33.333 0.00 0.00 0.00 1.52
249 250 7.102847 AGAAACCATCGACCAAAACTAAAAA 57.897 32.000 0.00 0.00 0.00 1.94
288 289 3.127895 ACTCGATCTTTCTCTCGTTGAGG 59.872 47.826 7.97 0.00 42.86 3.86
325 326 2.865551 CAAAACTTGGCATGGTTGTCAC 59.134 45.455 4.26 0.00 37.14 3.67
336 337 1.740585 TGGTTGTCACCTGTTTTGTCG 59.259 47.619 0.00 0.00 44.61 4.35
353 354 2.335011 GACTTTTGTGCACGCCCC 59.665 61.111 13.13 0.00 0.00 5.80
363 364 2.593436 CACGCCCCGGAAAGTTGT 60.593 61.111 0.73 0.00 0.00 3.32
376 377 2.116736 AAGTTGTCATGCGGTGCACG 62.117 55.000 11.45 7.54 43.04 5.34
379 380 2.738521 GTCATGCGGTGCACGTCT 60.739 61.111 11.45 0.00 43.04 4.18
488 2850 7.308348 GGGAAACAAAACAAGATCGAGTATTGA 60.308 37.037 12.41 0.00 33.32 2.57
491 2853 6.899114 ACAAAACAAGATCGAGTATTGAACC 58.101 36.000 12.41 0.00 33.32 3.62
496 2858 4.564940 AGATCGAGTATTGAACCCGTAC 57.435 45.455 0.00 0.00 28.09 3.67
544 2907 2.461695 TGGTGTTCTGGGCAAAGAAAA 58.538 42.857 3.72 0.00 37.90 2.29
591 2954 3.157087 ACTGTTCATACTTTTGGGCCTG 58.843 45.455 4.53 0.00 0.00 4.85
639 3002 0.178947 TGGGGTTTTTCCTTGGCGAT 60.179 50.000 0.00 0.00 36.25 4.58
765 3128 2.357034 GACGCACCAAAGAGCCGA 60.357 61.111 0.00 0.00 0.00 5.54
768 3131 2.347490 GCACCAAAGAGCCGAGGA 59.653 61.111 0.00 0.00 0.00 3.71
785 3148 0.465460 GGAGTATTTCCGGCCATGCA 60.465 55.000 2.24 0.00 35.91 3.96
801 3164 0.104462 TGCAGCCCCCTATCACCTAT 60.104 55.000 0.00 0.00 0.00 2.57
802 3165 1.068121 GCAGCCCCCTATCACCTATT 58.932 55.000 0.00 0.00 0.00 1.73
814 3178 6.434340 CCCTATCACCTATTTTTGCTTATCCC 59.566 42.308 0.00 0.00 0.00 3.85
819 3183 4.079958 ACCTATTTTTGCTTATCCCTCCGT 60.080 41.667 0.00 0.00 0.00 4.69
820 3184 4.887655 CCTATTTTTGCTTATCCCTCCGTT 59.112 41.667 0.00 0.00 0.00 4.44
824 3188 2.464796 TGCTTATCCCTCCGTTCCTA 57.535 50.000 0.00 0.00 0.00 2.94
826 3190 4.122337 TGCTTATCCCTCCGTTCCTATA 57.878 45.455 0.00 0.00 0.00 1.31
878 3251 2.105930 CAGACGCCTAGAGCCTGC 59.894 66.667 0.00 0.00 38.78 4.85
884 3257 2.688666 CCTAGAGCCTGCCACCCA 60.689 66.667 0.00 0.00 0.00 4.51
893 3266 1.669115 CTGCCACCCAGAGTCGTTG 60.669 63.158 0.00 0.00 44.64 4.10
930 3342 3.031736 TCGGCTAAACTTCCATAGCTCT 58.968 45.455 0.00 0.00 43.20 4.09
931 3343 3.068307 TCGGCTAAACTTCCATAGCTCTC 59.932 47.826 0.00 0.00 43.20 3.20
932 3344 3.385577 GGCTAAACTTCCATAGCTCTCG 58.614 50.000 0.00 0.00 43.20 4.04
933 3345 3.385577 GCTAAACTTCCATAGCTCTCGG 58.614 50.000 0.00 0.00 41.02 4.63
934 3346 3.181474 GCTAAACTTCCATAGCTCTCGGT 60.181 47.826 0.00 0.00 41.02 4.69
935 3347 2.969628 AACTTCCATAGCTCTCGGTG 57.030 50.000 0.00 0.00 0.00 4.94
936 3348 1.853963 ACTTCCATAGCTCTCGGTGT 58.146 50.000 0.00 0.00 0.00 4.16
937 3349 2.180276 ACTTCCATAGCTCTCGGTGTT 58.820 47.619 0.00 0.00 0.00 3.32
938 3350 2.093973 ACTTCCATAGCTCTCGGTGTTG 60.094 50.000 0.00 0.00 0.00 3.33
939 3351 0.824109 TCCATAGCTCTCGGTGTTGG 59.176 55.000 0.00 0.00 0.00 3.77
940 3352 0.824109 CCATAGCTCTCGGTGTTGGA 59.176 55.000 0.00 0.00 30.97 3.53
941 3353 1.207089 CCATAGCTCTCGGTGTTGGAA 59.793 52.381 0.00 0.00 30.97 3.53
942 3354 2.544685 CATAGCTCTCGGTGTTGGAAG 58.455 52.381 0.00 0.00 0.00 3.46
943 3355 1.919240 TAGCTCTCGGTGTTGGAAGA 58.081 50.000 0.00 0.00 0.00 2.87
944 3356 1.048601 AGCTCTCGGTGTTGGAAGAA 58.951 50.000 0.00 0.00 0.00 2.52
945 3357 1.416401 AGCTCTCGGTGTTGGAAGAAA 59.584 47.619 0.00 0.00 0.00 2.52
946 3358 1.531578 GCTCTCGGTGTTGGAAGAAAC 59.468 52.381 0.00 0.00 0.00 2.78
947 3359 2.143925 CTCTCGGTGTTGGAAGAAACC 58.856 52.381 0.00 0.00 0.00 3.27
948 3360 1.766496 TCTCGGTGTTGGAAGAAACCT 59.234 47.619 0.00 0.00 0.00 3.50
949 3361 2.967201 TCTCGGTGTTGGAAGAAACCTA 59.033 45.455 0.00 0.00 0.00 3.08
950 3362 3.006537 TCTCGGTGTTGGAAGAAACCTAG 59.993 47.826 0.00 0.00 0.00 3.02
951 3363 2.701951 TCGGTGTTGGAAGAAACCTAGT 59.298 45.455 0.00 0.00 0.00 2.57
952 3364 3.135167 TCGGTGTTGGAAGAAACCTAGTT 59.865 43.478 0.00 0.00 0.00 2.24
953 3365 3.497262 CGGTGTTGGAAGAAACCTAGTTC 59.503 47.826 0.00 0.00 0.00 3.01
954 3366 4.715713 GGTGTTGGAAGAAACCTAGTTCT 58.284 43.478 0.00 0.00 39.60 3.01
955 3367 5.510179 CGGTGTTGGAAGAAACCTAGTTCTA 60.510 44.000 0.00 0.00 36.84 2.10
956 3368 5.699915 GGTGTTGGAAGAAACCTAGTTCTAC 59.300 44.000 0.00 0.00 36.84 2.59
957 3369 5.699915 GTGTTGGAAGAAACCTAGTTCTACC 59.300 44.000 0.00 0.00 36.84 3.18
958 3370 5.367352 TGTTGGAAGAAACCTAGTTCTACCA 59.633 40.000 0.00 0.00 36.84 3.25
959 3371 5.479124 TGGAAGAAACCTAGTTCTACCAC 57.521 43.478 0.00 0.00 36.84 4.16
960 3372 5.152934 TGGAAGAAACCTAGTTCTACCACT 58.847 41.667 0.00 0.00 36.84 4.00
961 3373 5.245526 TGGAAGAAACCTAGTTCTACCACTC 59.754 44.000 0.00 0.00 36.84 3.51
982 3394 2.685100 GTACGTTCTTTCAGGTGGAGG 58.315 52.381 0.00 0.00 0.00 4.30
1012 3424 2.483714 CCGATTCCGATGGACAATGAGT 60.484 50.000 0.00 0.00 38.22 3.41
1127 3539 2.000447 GTCTTCGCTGGTGGTAATGAC 59.000 52.381 0.00 0.00 0.00 3.06
1479 3891 2.722201 GGCGAACGAGGAGTCCCAT 61.722 63.158 5.25 0.00 33.88 4.00
1492 3904 0.179094 GTCCCATGCCGTCGTATTCA 60.179 55.000 0.00 0.00 0.00 2.57
1515 3927 4.498520 ATCGACGACCTGCTGGCG 62.499 66.667 19.37 19.37 38.30 5.69
1603 4015 1.602605 TCCTTCACCTCGCTCGTGA 60.603 57.895 0.00 0.00 38.46 4.35
1695 4107 1.035385 TCGCTATTGACCTCGCCAGA 61.035 55.000 0.00 0.00 0.00 3.86
1698 4110 1.804372 GCTATTGACCTCGCCAGACAG 60.804 57.143 0.00 0.00 0.00 3.51
1712 4124 2.432146 CCAGACAGCTGCTTCAGGTATA 59.568 50.000 15.27 0.00 40.40 1.47
1715 4127 5.468592 CAGACAGCTGCTTCAGGTATATAG 58.531 45.833 15.27 0.00 40.40 1.31
1722 4138 6.551601 AGCTGCTTCAGGTATATAGTACAAGT 59.448 38.462 0.00 0.00 40.59 3.16
1769 4268 2.779755 ATTAACCGTGTGAGCCATGA 57.220 45.000 0.00 0.00 31.20 3.07
1771 4270 1.803334 TAACCGTGTGAGCCATGAAC 58.197 50.000 0.00 0.00 31.20 3.18
1772 4271 0.179032 AACCGTGTGAGCCATGAACA 60.179 50.000 0.00 0.00 31.20 3.18
1773 4272 0.179032 ACCGTGTGAGCCATGAACAA 60.179 50.000 0.00 0.00 31.20 2.83
1774 4273 0.238289 CCGTGTGAGCCATGAACAAC 59.762 55.000 0.00 0.00 31.20 3.32
1775 4274 0.110688 CGTGTGAGCCATGAACAACG 60.111 55.000 0.00 1.73 31.20 4.10
1780 4279 0.166814 GAGCCATGAACAACGAGCAC 59.833 55.000 0.00 0.00 0.00 4.40
1781 4280 0.250467 AGCCATGAACAACGAGCACT 60.250 50.000 0.00 0.00 0.00 4.40
1782 4281 0.166814 GCCATGAACAACGAGCACTC 59.833 55.000 0.00 0.00 0.00 3.51
1836 4466 8.110860 TCTGAATTTTCAATTAGAACTGGGTC 57.889 34.615 0.00 0.00 36.64 4.46
1971 6814 1.774110 TGGTGACCAACATGCTGTTT 58.226 45.000 0.00 0.00 38.77 2.83
1976 6819 0.951558 ACCAACATGCTGTTTCGGAC 59.048 50.000 10.37 0.00 38.77 4.79
2304 7147 2.583441 CCCCGACTTCACTCTGGCA 61.583 63.158 0.00 0.00 0.00 4.92
2732 7578 1.775039 GCGTGGATGCATGCGTACAT 61.775 55.000 27.19 8.11 36.79 2.29
2786 7632 3.971305 TCTTGAAACTAGGGACCAAGTCA 59.029 43.478 12.73 0.00 36.53 3.41
2887 7733 6.957631 ACTGGAGTATCATTTCACCACAATA 58.042 36.000 0.00 0.00 36.25 1.90
2898 7744 9.710900 TCATTTCACCACAATAGCTATATGTAG 57.289 33.333 6.68 9.22 0.00 2.74
3237 8083 1.061485 GAAGACAGAAGGACGTTCGC 58.939 55.000 2.41 0.00 40.49 4.70
3255 8101 3.657634 TCGCTGGATCTTCATCTAATGC 58.342 45.455 0.00 0.00 0.00 3.56
3281 8132 7.399634 TCTAGGAAATCGACTTACCCAAAAAT 58.600 34.615 0.00 0.00 0.00 1.82
3316 8168 6.589135 ACTTACATACAGGTGCCCTATTTAC 58.411 40.000 0.00 0.00 29.64 2.01
3351 8203 2.312741 TGGGGATGAAAGCCTGAAATCT 59.687 45.455 0.00 0.00 46.10 2.40
3352 8204 3.245730 TGGGGATGAAAGCCTGAAATCTT 60.246 43.478 0.00 0.00 46.10 2.40
3354 8206 4.019174 GGGATGAAAGCCTGAAATCTTCA 58.981 43.478 0.00 0.00 46.10 3.02
3388 9462 1.064134 GGGATTTCGATTGTGGCGC 59.936 57.895 0.00 0.00 0.00 6.53
3410 9484 4.560311 GCCTTCTCTCGCATCTATGATCAA 60.560 45.833 0.00 0.00 0.00 2.57
3528 9612 3.127548 GCAACGACAAGGATCAATGATGT 59.872 43.478 0.00 0.00 0.00 3.06
3529 9613 4.379813 GCAACGACAAGGATCAATGATGTT 60.380 41.667 0.00 0.00 0.00 2.71
3560 9646 4.277423 TCATTCGTCTAGGCATATCGTTGA 59.723 41.667 0.00 5.69 0.00 3.18
3601 9687 0.807496 GCCAGTGTGATCCTTCTTGC 59.193 55.000 0.00 0.00 0.00 4.01
3680 9768 6.550854 ACTCATGGTATTTTGTATCCCATTGG 59.449 38.462 0.00 0.00 33.70 3.16
3683 9771 8.061920 TCATGGTATTTTGTATCCCATTGGTAA 58.938 33.333 1.20 0.00 33.70 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
1 2 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
2 3 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
3 4 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
4 5 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
5 6 7.731882 TTACATACGGAACAAAATGAGTGAA 57.268 32.000 0.00 0.00 0.00 3.18
6 7 7.604545 TGATTACATACGGAACAAAATGAGTGA 59.395 33.333 0.00 0.00 0.00 3.41
7 8 7.692291 GTGATTACATACGGAACAAAATGAGTG 59.308 37.037 0.00 0.00 0.00 3.51
8 9 7.148306 GGTGATTACATACGGAACAAAATGAGT 60.148 37.037 0.00 0.00 0.00 3.41
9 10 7.148323 TGGTGATTACATACGGAACAAAATGAG 60.148 37.037 0.00 0.00 0.00 2.90
10 11 6.655425 TGGTGATTACATACGGAACAAAATGA 59.345 34.615 0.00 0.00 0.00 2.57
11 12 6.847400 TGGTGATTACATACGGAACAAAATG 58.153 36.000 0.00 0.00 0.00 2.32
12 13 7.639113 ATGGTGATTACATACGGAACAAAAT 57.361 32.000 0.00 0.00 0.00 1.82
13 14 7.455641 AATGGTGATTACATACGGAACAAAA 57.544 32.000 0.00 0.00 0.00 2.44
14 15 7.175119 TCAAATGGTGATTACATACGGAACAAA 59.825 33.333 0.00 0.00 0.00 2.83
15 16 6.655425 TCAAATGGTGATTACATACGGAACAA 59.345 34.615 0.00 0.00 0.00 2.83
16 17 6.174049 TCAAATGGTGATTACATACGGAACA 58.826 36.000 0.00 0.00 0.00 3.18
17 18 6.671614 TCAAATGGTGATTACATACGGAAC 57.328 37.500 0.00 0.00 0.00 3.62
18 19 7.362229 GGTTTCAAATGGTGATTACATACGGAA 60.362 37.037 0.00 0.00 35.70 4.30
19 20 6.094325 GGTTTCAAATGGTGATTACATACGGA 59.906 38.462 0.00 0.00 35.70 4.69
20 21 6.094881 AGGTTTCAAATGGTGATTACATACGG 59.905 38.462 0.00 0.00 35.70 4.02
21 22 7.065803 AGAGGTTTCAAATGGTGATTACATACG 59.934 37.037 0.00 0.00 35.70 3.06
22 23 8.281212 AGAGGTTTCAAATGGTGATTACATAC 57.719 34.615 0.00 0.00 35.70 2.39
23 24 9.613428 CTAGAGGTTTCAAATGGTGATTACATA 57.387 33.333 0.00 0.00 35.70 2.29
24 25 8.328758 TCTAGAGGTTTCAAATGGTGATTACAT 58.671 33.333 0.00 0.00 35.70 2.29
25 26 7.685481 TCTAGAGGTTTCAAATGGTGATTACA 58.315 34.615 0.00 0.00 35.70 2.41
26 27 8.561738 TTCTAGAGGTTTCAAATGGTGATTAC 57.438 34.615 0.00 0.00 35.70 1.89
27 28 9.231297 CTTTCTAGAGGTTTCAAATGGTGATTA 57.769 33.333 0.00 0.00 35.70 1.75
28 29 7.944554 TCTTTCTAGAGGTTTCAAATGGTGATT 59.055 33.333 0.00 0.00 35.70 2.57
29 30 7.391833 GTCTTTCTAGAGGTTTCAAATGGTGAT 59.608 37.037 0.00 0.00 35.70 3.06
30 31 6.710744 GTCTTTCTAGAGGTTTCAAATGGTGA 59.289 38.462 0.00 0.00 0.00 4.02
31 32 6.486657 TGTCTTTCTAGAGGTTTCAAATGGTG 59.513 38.462 0.00 0.00 0.00 4.17
32 33 6.601332 TGTCTTTCTAGAGGTTTCAAATGGT 58.399 36.000 0.00 0.00 0.00 3.55
33 34 7.510549 TTGTCTTTCTAGAGGTTTCAAATGG 57.489 36.000 0.00 0.00 0.00 3.16
45 46 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
46 47 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
47 48 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
48 49 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
49 50 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
50 51 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
51 52 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
52 53 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
53 54 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
54 55 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
55 56 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
56 57 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
57 58 6.785963 TGATACTCCCTCCGTTCCTAAATATT 59.214 38.462 0.00 0.00 0.00 1.28
58 59 6.320518 TGATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
59 60 5.708544 TGATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
60 61 4.553678 TGATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
61 62 3.985127 TGATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
62 63 3.675348 TGATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
63 64 3.497332 CATGATACTCCCTCCGTTCCTA 58.503 50.000 0.00 0.00 0.00 2.94
64 65 2.320781 CATGATACTCCCTCCGTTCCT 58.679 52.381 0.00 0.00 0.00 3.36
65 66 1.270358 GCATGATACTCCCTCCGTTCC 60.270 57.143 0.00 0.00 0.00 3.62
66 67 1.412710 TGCATGATACTCCCTCCGTTC 59.587 52.381 0.00 0.00 0.00 3.95
67 68 1.496060 TGCATGATACTCCCTCCGTT 58.504 50.000 0.00 0.00 0.00 4.44
68 69 1.345741 CATGCATGATACTCCCTCCGT 59.654 52.381 22.59 0.00 0.00 4.69
69 70 1.943046 GCATGCATGATACTCCCTCCG 60.943 57.143 30.64 0.00 0.00 4.63
70 71 1.350351 AGCATGCATGATACTCCCTCC 59.650 52.381 30.64 8.13 0.00 4.30
71 72 2.812591 CAAGCATGCATGATACTCCCTC 59.187 50.000 30.64 8.88 0.00 4.30
72 73 2.860009 CAAGCATGCATGATACTCCCT 58.140 47.619 30.64 12.60 0.00 4.20
85 86 1.130938 TGCATTAGTGTCGCAAGCATG 59.869 47.619 0.00 0.00 31.46 4.06
86 87 1.452110 TGCATTAGTGTCGCAAGCAT 58.548 45.000 0.00 0.00 31.46 3.79
87 88 1.233919 TTGCATTAGTGTCGCAAGCA 58.766 45.000 0.00 0.00 40.54 3.91
88 89 1.978782 GTTTGCATTAGTGTCGCAAGC 59.021 47.619 0.00 0.00 45.58 4.01
89 90 3.266541 TGTTTGCATTAGTGTCGCAAG 57.733 42.857 0.00 0.00 45.58 4.01
90 91 3.501828 AGATGTTTGCATTAGTGTCGCAA 59.498 39.130 0.00 0.00 43.52 4.85
91 92 3.073678 AGATGTTTGCATTAGTGTCGCA 58.926 40.909 0.00 0.00 35.07 5.10
92 93 3.747099 AGATGTTTGCATTAGTGTCGC 57.253 42.857 0.00 0.00 35.07 5.19
93 94 9.767684 TTTTTATAGATGTTTGCATTAGTGTCG 57.232 29.630 0.00 0.00 35.07 4.35
143 144 9.575868 TGGGTGAACAGTAACTAAAAATATCAA 57.424 29.630 0.00 0.00 0.00 2.57
144 145 9.226606 CTGGGTGAACAGTAACTAAAAATATCA 57.773 33.333 0.00 0.00 33.81 2.15
145 146 8.674607 CCTGGGTGAACAGTAACTAAAAATATC 58.325 37.037 0.00 0.00 36.75 1.63
146 147 8.387813 TCCTGGGTGAACAGTAACTAAAAATAT 58.612 33.333 0.00 0.00 36.75 1.28
147 148 7.747690 TCCTGGGTGAACAGTAACTAAAAATA 58.252 34.615 0.00 0.00 36.75 1.40
148 149 6.607019 TCCTGGGTGAACAGTAACTAAAAAT 58.393 36.000 0.00 0.00 36.75 1.82
149 150 6.003859 TCCTGGGTGAACAGTAACTAAAAA 57.996 37.500 0.00 0.00 36.75 1.94
150 151 5.617252 CTCCTGGGTGAACAGTAACTAAAA 58.383 41.667 0.00 0.00 36.75 1.52
151 152 4.504340 GCTCCTGGGTGAACAGTAACTAAA 60.504 45.833 0.00 0.00 36.75 1.85
152 153 3.007614 GCTCCTGGGTGAACAGTAACTAA 59.992 47.826 0.00 0.00 36.75 2.24
153 154 2.565834 GCTCCTGGGTGAACAGTAACTA 59.434 50.000 0.00 0.00 36.75 2.24
154 155 1.348036 GCTCCTGGGTGAACAGTAACT 59.652 52.381 0.00 0.00 36.75 2.24
155 156 1.071699 TGCTCCTGGGTGAACAGTAAC 59.928 52.381 0.00 0.00 36.75 2.50
156 157 1.429930 TGCTCCTGGGTGAACAGTAA 58.570 50.000 0.00 0.00 36.75 2.24
157 158 1.656587 ATGCTCCTGGGTGAACAGTA 58.343 50.000 0.00 0.00 36.75 2.74
158 159 1.656587 TATGCTCCTGGGTGAACAGT 58.343 50.000 0.00 0.00 36.75 3.55
159 160 2.569059 CATATGCTCCTGGGTGAACAG 58.431 52.381 0.00 0.00 38.21 3.16
160 161 1.408683 GCATATGCTCCTGGGTGAACA 60.409 52.381 20.64 0.00 38.21 3.18
161 162 1.312815 GCATATGCTCCTGGGTGAAC 58.687 55.000 20.64 0.00 38.21 3.18
162 163 3.806941 GCATATGCTCCTGGGTGAA 57.193 52.632 20.64 0.00 38.21 3.18
172 173 3.558901 TTGGCTACCAGGAGCATATGCT 61.559 50.000 29.97 29.97 44.76 3.79
173 174 0.397941 TGGCTACCAGGAGCATATGC 59.602 55.000 20.36 20.36 44.76 3.14
174 175 2.936919 TTGGCTACCAGGAGCATATG 57.063 50.000 3.88 0.00 44.76 1.78
175 176 3.951563 TTTTGGCTACCAGGAGCATAT 57.048 42.857 3.88 0.00 44.76 1.78
176 177 3.554934 CATTTTGGCTACCAGGAGCATA 58.445 45.455 3.88 0.00 44.76 3.14
177 178 2.381911 CATTTTGGCTACCAGGAGCAT 58.618 47.619 3.88 0.00 44.76 3.79
178 179 1.838112 CATTTTGGCTACCAGGAGCA 58.162 50.000 3.88 0.00 44.76 4.26
179 180 0.457443 GCATTTTGGCTACCAGGAGC 59.543 55.000 0.00 0.00 42.05 4.70
180 181 1.106285 GGCATTTTGGCTACCAGGAG 58.894 55.000 0.00 0.00 40.14 3.69
181 182 0.407528 TGGCATTTTGGCTACCAGGA 59.592 50.000 0.00 0.00 44.10 3.86
182 183 0.819582 CTGGCATTTTGGCTACCAGG 59.180 55.000 0.00 0.00 43.42 4.45
184 185 1.257055 GGCTGGCATTTTGGCTACCA 61.257 55.000 0.00 0.00 44.10 3.25
185 186 1.257055 TGGCTGGCATTTTGGCTACC 61.257 55.000 0.00 4.67 44.10 3.18
186 187 0.108662 GTGGCTGGCATTTTGGCTAC 60.109 55.000 7.33 0.00 44.10 3.58
187 188 1.257055 GGTGGCTGGCATTTTGGCTA 61.257 55.000 7.33 0.00 44.10 3.93
188 189 2.586293 GGTGGCTGGCATTTTGGCT 61.586 57.895 7.33 0.00 44.10 4.75
189 190 2.046988 GGTGGCTGGCATTTTGGC 60.047 61.111 7.33 0.00 44.03 4.52
190 191 0.603439 GTTGGTGGCTGGCATTTTGG 60.603 55.000 7.33 0.00 0.00 3.28
191 192 0.106335 TGTTGGTGGCTGGCATTTTG 59.894 50.000 7.33 0.00 0.00 2.44
192 193 1.058284 ATGTTGGTGGCTGGCATTTT 58.942 45.000 7.33 0.00 0.00 1.82
193 194 1.058284 AATGTTGGTGGCTGGCATTT 58.942 45.000 7.33 0.00 0.00 2.32
194 195 1.002315 GAAATGTTGGTGGCTGGCATT 59.998 47.619 7.33 0.00 0.00 3.56
195 196 0.609662 GAAATGTTGGTGGCTGGCAT 59.390 50.000 7.33 0.00 0.00 4.40
196 197 0.469705 AGAAATGTTGGTGGCTGGCA 60.470 50.000 0.00 0.00 0.00 4.92
197 198 0.037975 CAGAAATGTTGGTGGCTGGC 60.038 55.000 0.00 0.00 0.00 4.85
198 199 0.037975 GCAGAAATGTTGGTGGCTGG 60.038 55.000 0.00 0.00 0.00 4.85
199 200 0.037975 GGCAGAAATGTTGGTGGCTG 60.038 55.000 0.00 0.00 32.92 4.85
200 201 0.178953 AGGCAGAAATGTTGGTGGCT 60.179 50.000 0.00 0.00 40.72 4.75
201 202 0.037975 CAGGCAGAAATGTTGGTGGC 60.038 55.000 0.00 0.00 35.78 5.01
202 203 1.331214 ACAGGCAGAAATGTTGGTGG 58.669 50.000 0.00 0.00 0.00 4.61
203 204 2.884012 TGTACAGGCAGAAATGTTGGTG 59.116 45.455 0.00 0.00 0.00 4.17
204 205 3.222173 TGTACAGGCAGAAATGTTGGT 57.778 42.857 0.00 0.00 0.00 3.67
205 206 3.820467 TCTTGTACAGGCAGAAATGTTGG 59.180 43.478 0.00 0.00 0.00 3.77
206 207 5.437289 TTCTTGTACAGGCAGAAATGTTG 57.563 39.130 6.09 0.00 0.00 3.33
207 208 5.221244 GGTTTCTTGTACAGGCAGAAATGTT 60.221 40.000 19.18 0.00 32.25 2.71
208 209 4.278419 GGTTTCTTGTACAGGCAGAAATGT 59.722 41.667 19.18 0.00 32.25 2.71
209 210 4.278170 TGGTTTCTTGTACAGGCAGAAATG 59.722 41.667 19.18 0.00 32.25 2.32
210 211 4.469657 TGGTTTCTTGTACAGGCAGAAAT 58.530 39.130 19.18 0.00 32.25 2.17
211 212 3.892284 TGGTTTCTTGTACAGGCAGAAA 58.108 40.909 14.43 14.43 0.00 2.52
212 213 3.569194 TGGTTTCTTGTACAGGCAGAA 57.431 42.857 4.67 4.67 0.00 3.02
213 214 3.674997 GATGGTTTCTTGTACAGGCAGA 58.325 45.455 0.00 0.00 0.00 4.26
214 215 2.416547 CGATGGTTTCTTGTACAGGCAG 59.583 50.000 0.00 0.00 0.00 4.85
215 216 2.037902 TCGATGGTTTCTTGTACAGGCA 59.962 45.455 0.00 0.00 0.00 4.75
216 217 2.415512 GTCGATGGTTTCTTGTACAGGC 59.584 50.000 0.00 0.00 0.00 4.85
217 218 3.000727 GGTCGATGGTTTCTTGTACAGG 58.999 50.000 0.00 0.00 0.00 4.00
218 219 3.659786 TGGTCGATGGTTTCTTGTACAG 58.340 45.455 0.00 0.00 0.00 2.74
219 220 3.755112 TGGTCGATGGTTTCTTGTACA 57.245 42.857 0.00 0.00 0.00 2.90
220 221 5.008316 AGTTTTGGTCGATGGTTTCTTGTAC 59.992 40.000 0.00 0.00 0.00 2.90
221 222 5.127491 AGTTTTGGTCGATGGTTTCTTGTA 58.873 37.500 0.00 0.00 0.00 2.41
222 223 3.951680 AGTTTTGGTCGATGGTTTCTTGT 59.048 39.130 0.00 0.00 0.00 3.16
223 224 4.568152 AGTTTTGGTCGATGGTTTCTTG 57.432 40.909 0.00 0.00 0.00 3.02
224 225 6.702716 TTTAGTTTTGGTCGATGGTTTCTT 57.297 33.333 0.00 0.00 0.00 2.52
225 226 6.702716 TTTTAGTTTTGGTCGATGGTTTCT 57.297 33.333 0.00 0.00 0.00 2.52
249 250 2.799207 CGAGTGCACATGCCAAGTTTTT 60.799 45.455 21.04 0.00 41.18 1.94
250 251 1.269206 CGAGTGCACATGCCAAGTTTT 60.269 47.619 21.04 0.00 41.18 2.43
251 252 0.311790 CGAGTGCACATGCCAAGTTT 59.688 50.000 21.04 0.00 41.18 2.66
252 253 0.534877 TCGAGTGCACATGCCAAGTT 60.535 50.000 21.04 0.00 41.18 2.66
253 254 0.321919 ATCGAGTGCACATGCCAAGT 60.322 50.000 21.04 0.00 41.18 3.16
254 255 0.376152 GATCGAGTGCACATGCCAAG 59.624 55.000 21.04 1.90 41.18 3.61
255 256 0.036105 AGATCGAGTGCACATGCCAA 60.036 50.000 21.04 0.00 41.18 4.52
256 257 0.036105 AAGATCGAGTGCACATGCCA 60.036 50.000 21.04 0.00 41.18 4.92
257 258 1.063174 GAAAGATCGAGTGCACATGCC 59.937 52.381 21.04 4.08 41.18 4.40
288 289 4.432712 AGTTTTGGTCACAGCACATTTTC 58.567 39.130 0.00 0.00 0.00 2.29
321 322 4.095610 CAAAAGTCGACAAAACAGGTGAC 58.904 43.478 19.50 0.00 0.00 3.67
325 326 2.851824 GCACAAAAGTCGACAAAACAGG 59.148 45.455 19.50 2.59 0.00 4.00
336 337 2.335011 GGGGCGTGCACAAAAGTC 59.665 61.111 18.64 1.03 0.00 3.01
353 354 0.110238 CACCGCATGACAACTTTCCG 60.110 55.000 0.00 0.00 0.00 4.30
376 377 0.319900 TGCACTCGAGAGCCAAAGAC 60.320 55.000 28.29 3.72 0.00 3.01
379 380 0.035317 ATGTGCACTCGAGAGCCAAA 59.965 50.000 28.29 15.96 0.00 3.28
462 2824 4.830826 ACTCGATCTTGTTTTGTTTCCC 57.169 40.909 0.00 0.00 0.00 3.97
503 2865 9.466497 ACACCATGAAAGTAATTACTTGATGAT 57.534 29.630 30.49 21.59 45.17 2.45
518 2881 1.619654 TGCCCAGAACACCATGAAAG 58.380 50.000 0.00 0.00 0.00 2.62
564 2927 6.376018 GGCCCAAAAGTATGAACAGTAACATA 59.624 38.462 0.00 0.00 0.00 2.29
619 2982 0.178947 TCGCCAAGGAAAAACCCCAT 60.179 50.000 0.00 0.00 40.05 4.00
651 3014 9.678260 AAATACAGTTGATCTTCTATTCTGCTT 57.322 29.630 0.00 0.00 0.00 3.91
659 3022 6.946340 TGCTGGAAATACAGTTGATCTTCTA 58.054 36.000 0.00 0.00 40.59 2.10
707 3070 9.253832 TGGAGAAAATTATTTAGCAATGGAGAA 57.746 29.630 0.00 0.00 0.00 2.87
729 3092 3.553715 CGTCCACACCTGATGATATGGAG 60.554 52.174 0.00 0.00 36.92 3.86
756 3119 2.159085 CGGAAATACTCCTCGGCTCTTT 60.159 50.000 0.00 0.00 42.85 2.52
765 3128 0.179018 GCATGGCCGGAAATACTCCT 60.179 55.000 5.05 0.00 42.85 3.69
768 3131 1.103398 GCTGCATGGCCGGAAATACT 61.103 55.000 5.05 0.00 0.00 2.12
785 3148 3.691311 GCAAAAATAGGTGATAGGGGGCT 60.691 47.826 0.00 0.00 0.00 5.19
792 3155 7.231467 GGAGGGATAAGCAAAAATAGGTGATA 58.769 38.462 0.00 0.00 0.00 2.15
801 3164 3.086282 GGAACGGAGGGATAAGCAAAAA 58.914 45.455 0.00 0.00 0.00 1.94
802 3165 2.307686 AGGAACGGAGGGATAAGCAAAA 59.692 45.455 0.00 0.00 0.00 2.44
819 3183 7.466725 GCGCGCCAATTTATATGATTATAGGAA 60.467 37.037 23.24 0.00 0.00 3.36
820 3184 6.018262 GCGCGCCAATTTATATGATTATAGGA 60.018 38.462 23.24 0.00 0.00 2.94
824 3188 4.495679 CCGCGCGCCAATTTATATGATTAT 60.496 41.667 27.36 0.00 0.00 1.28
826 3190 2.414029 CCGCGCGCCAATTTATATGATT 60.414 45.455 27.36 0.00 0.00 2.57
863 3229 3.461773 TGGCAGGCTCTAGGCGTC 61.462 66.667 0.00 0.00 46.23 5.19
878 3251 0.179056 ACAACAACGACTCTGGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
884 3257 1.030457 ACTCCGACAACAACGACTCT 58.970 50.000 0.00 0.00 0.00 3.24
893 3266 0.989890 CCGATCGAAACTCCGACAAC 59.010 55.000 18.66 0.00 41.70 3.32
930 3342 2.701951 ACTAGGTTTCTTCCAACACCGA 59.298 45.455 0.00 0.00 34.19 4.69
931 3343 3.121738 ACTAGGTTTCTTCCAACACCG 57.878 47.619 0.00 0.00 34.19 4.94
932 3344 4.715713 AGAACTAGGTTTCTTCCAACACC 58.284 43.478 0.00 0.00 31.39 4.16
933 3345 5.699915 GGTAGAACTAGGTTTCTTCCAACAC 59.300 44.000 11.61 0.69 40.85 3.32
934 3346 5.367352 TGGTAGAACTAGGTTTCTTCCAACA 59.633 40.000 15.06 0.43 45.18 3.33
935 3347 5.861727 TGGTAGAACTAGGTTTCTTCCAAC 58.138 41.667 15.06 3.36 45.18 3.77
937 3349 5.152934 AGTGGTAGAACTAGGTTTCTTCCA 58.847 41.667 14.00 14.00 45.66 3.53
938 3350 5.621781 CGAGTGGTAGAACTAGGTTTCTTCC 60.622 48.000 10.24 10.24 41.30 3.46
939 3351 5.048154 ACGAGTGGTAGAACTAGGTTTCTTC 60.048 44.000 1.31 0.00 37.09 2.87
940 3352 4.831710 ACGAGTGGTAGAACTAGGTTTCTT 59.168 41.667 1.31 0.00 37.09 2.52
941 3353 4.405548 ACGAGTGGTAGAACTAGGTTTCT 58.594 43.478 0.00 0.00 39.28 2.52
942 3354 4.780275 ACGAGTGGTAGAACTAGGTTTC 57.220 45.455 0.00 0.00 0.00 2.78
943 3355 4.154918 CGTACGAGTGGTAGAACTAGGTTT 59.845 45.833 10.44 0.00 0.00 3.27
944 3356 3.686726 CGTACGAGTGGTAGAACTAGGTT 59.313 47.826 10.44 0.00 0.00 3.50
945 3357 3.265791 CGTACGAGTGGTAGAACTAGGT 58.734 50.000 10.44 0.00 0.00 3.08
946 3358 3.265791 ACGTACGAGTGGTAGAACTAGG 58.734 50.000 24.41 0.00 0.00 3.02
947 3359 4.629200 AGAACGTACGAGTGGTAGAACTAG 59.371 45.833 24.41 0.00 0.00 2.57
948 3360 4.569943 AGAACGTACGAGTGGTAGAACTA 58.430 43.478 24.41 0.00 0.00 2.24
949 3361 3.406764 AGAACGTACGAGTGGTAGAACT 58.593 45.455 24.41 2.97 0.00 3.01
950 3362 3.820777 AGAACGTACGAGTGGTAGAAC 57.179 47.619 24.41 0.78 0.00 3.01
951 3363 4.275689 TGAAAGAACGTACGAGTGGTAGAA 59.724 41.667 24.41 0.00 0.00 2.10
952 3364 3.814842 TGAAAGAACGTACGAGTGGTAGA 59.185 43.478 24.41 0.00 0.00 2.59
953 3365 4.151258 TGAAAGAACGTACGAGTGGTAG 57.849 45.455 24.41 0.00 0.00 3.18
954 3366 3.058016 CCTGAAAGAACGTACGAGTGGTA 60.058 47.826 24.41 1.61 34.07 3.25
955 3367 2.288030 CCTGAAAGAACGTACGAGTGGT 60.288 50.000 24.41 3.61 34.07 4.16
956 3368 2.288030 ACCTGAAAGAACGTACGAGTGG 60.288 50.000 24.41 13.35 34.07 4.00
957 3369 2.724690 CACCTGAAAGAACGTACGAGTG 59.275 50.000 24.41 10.25 34.07 3.51
958 3370 2.288030 CCACCTGAAAGAACGTACGAGT 60.288 50.000 24.41 9.28 34.07 4.18
959 3371 2.030540 TCCACCTGAAAGAACGTACGAG 60.031 50.000 24.41 6.59 34.07 4.18
960 3372 1.955778 TCCACCTGAAAGAACGTACGA 59.044 47.619 24.41 0.00 34.07 3.43
961 3373 2.325761 CTCCACCTGAAAGAACGTACG 58.674 52.381 15.01 15.01 34.07 3.67
982 3394 2.012902 ATCGGAATCGGTCGGTGGAC 62.013 60.000 0.00 0.00 42.66 4.02
1012 3424 0.771339 TTTCCCACCCCCTTACCGAA 60.771 55.000 0.00 0.00 0.00 4.30
1127 3539 1.748122 GACAGCAGGGACAGCATGG 60.748 63.158 0.00 0.00 45.86 3.66
1128 3540 1.002990 TGACAGCAGGGACAGCATG 60.003 57.895 0.00 0.00 45.86 4.06
1129 3541 1.002868 GTGACAGCAGGGACAGCAT 60.003 57.895 0.00 0.00 45.86 3.79
1130 3542 1.699054 AAGTGACAGCAGGGACAGCA 61.699 55.000 0.00 0.00 45.86 4.41
1131 3543 1.072159 AAGTGACAGCAGGGACAGC 59.928 57.895 0.00 0.00 42.86 4.40
1132 3544 0.394192 TCAAGTGACAGCAGGGACAG 59.606 55.000 0.00 0.00 0.00 3.51
1133 3545 0.106708 GTCAAGTGACAGCAGGGACA 59.893 55.000 6.57 0.00 44.18 4.02
1134 3546 0.946221 CGTCAAGTGACAGCAGGGAC 60.946 60.000 11.77 0.00 44.99 4.46
1135 3547 1.367471 CGTCAAGTGACAGCAGGGA 59.633 57.895 11.77 0.00 44.99 4.20
1173 3585 0.818852 CCATGATACCATGTGCGCCA 60.819 55.000 4.18 2.31 46.68 5.69
1185 3597 1.068588 GCTACAGACACGGCCATGATA 59.931 52.381 5.45 0.00 0.00 2.15
1186 3598 0.179073 GCTACAGACACGGCCATGAT 60.179 55.000 5.45 0.00 0.00 2.45
1479 3891 0.599060 TGACACTGAATACGACGGCA 59.401 50.000 0.00 0.00 0.00 5.69
1492 3904 1.213013 GCAGGTCGTCGATGACACT 59.787 57.895 32.66 24.75 40.72 3.55
1695 4107 5.833667 TGTACTATATACCTGAAGCAGCTGT 59.166 40.000 16.64 0.00 0.00 4.40
1698 4110 6.750148 ACTTGTACTATATACCTGAAGCAGC 58.250 40.000 0.00 0.00 0.00 5.25
1712 4124 6.538742 GCATGGATGTGTGTAACTTGTACTAT 59.461 38.462 0.00 0.00 38.04 2.12
1715 4127 4.454161 TGCATGGATGTGTGTAACTTGTAC 59.546 41.667 0.00 0.00 38.04 2.90
1722 4138 3.126686 CGTTCATGCATGGATGTGTGTAA 59.873 43.478 25.97 10.15 0.00 2.41
1760 4259 0.250252 TGCTCGTTGTTCATGGCTCA 60.250 50.000 0.00 0.00 0.00 4.26
1775 4274 2.397252 GATTGTGCGCGAGTGCTC 59.603 61.111 12.10 6.95 39.65 4.26
1780 4279 0.729116 AAATCAGGATTGTGCGCGAG 59.271 50.000 12.10 0.00 0.00 5.03
1781 4280 0.726827 GAAATCAGGATTGTGCGCGA 59.273 50.000 12.10 0.00 0.00 5.87
1782 4281 0.248215 GGAAATCAGGATTGTGCGCG 60.248 55.000 0.00 0.00 0.00 6.86
1783 4282 1.098050 AGGAAATCAGGATTGTGCGC 58.902 50.000 0.00 0.00 0.00 6.09
1785 4284 3.426695 CGTTCAGGAAATCAGGATTGTGC 60.427 47.826 0.00 0.00 0.00 4.57
1786 4285 3.127548 CCGTTCAGGAAATCAGGATTGTG 59.872 47.826 0.00 0.00 45.00 3.33
1787 4286 3.244911 ACCGTTCAGGAAATCAGGATTGT 60.245 43.478 0.00 0.00 45.00 2.71
1788 4287 3.347216 ACCGTTCAGGAAATCAGGATTG 58.653 45.455 0.00 0.00 45.00 2.67
1836 4466 2.499289 ACCTAGAAGACATCACAGGCAG 59.501 50.000 0.00 0.00 36.47 4.85
2177 7020 1.535204 CCCAAGGGTGGTGATGTTGC 61.535 60.000 0.00 0.00 44.30 4.17
3199 8045 7.287061 TGTCTTCTTCCTCCTTTCACAAAATA 58.713 34.615 0.00 0.00 0.00 1.40
3237 8083 6.436847 TCCTAGAGCATTAGATGAAGATCCAG 59.563 42.308 0.00 0.00 0.00 3.86
3255 8101 5.593679 TTGGGTAAGTCGATTTCCTAGAG 57.406 43.478 0.00 0.00 0.00 2.43
3281 8132 6.597672 CACCTGTATGTAAGTTGCCTGATTTA 59.402 38.462 0.00 0.00 0.00 1.40
3359 8211 2.510613 TCGAAATCCCACCTTGGAAAC 58.489 47.619 0.00 0.00 40.96 2.78
3388 9462 4.780275 TGATCATAGATGCGAGAGAAGG 57.220 45.455 0.00 0.00 0.00 3.46
3399 9473 6.009589 AGTCTCGGAGTCATTGATCATAGAT 58.990 40.000 4.69 0.00 0.00 1.98
3403 9477 3.956848 TCAGTCTCGGAGTCATTGATCAT 59.043 43.478 4.69 0.00 0.00 2.45
3410 9484 4.440802 GCAAATAGTCAGTCTCGGAGTCAT 60.441 45.833 4.69 0.00 0.00 3.06
3474 9548 9.970395 ATAAAAATGATGTAAGCACATATGGTG 57.030 29.630 7.80 4.46 45.58 4.17
3541 9627 4.072839 AGATCAACGATATGCCTAGACGA 58.927 43.478 0.00 0.00 0.00 4.20
3560 9646 6.998968 GCATATAGCAAAGCCATAGAAGAT 57.001 37.500 0.00 0.00 44.79 2.40
3601 9687 0.241749 AGCCAACATCAATGCACACG 59.758 50.000 0.00 0.00 0.00 4.49
3648 9736 7.769044 GGATACAAAATACCATGAGTGTACACT 59.231 37.037 28.27 28.27 45.84 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.