Multiple sequence alignment - TraesCS1D01G374200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G374200 chr1D 100.000 2948 0 0 1 2948 451870716 451867769 0.000000e+00 5445.0
1 TraesCS1D01G374200 chr1D 89.936 944 69 10 1013 1946 414441286 414440359 0.000000e+00 1194.0
2 TraesCS1D01G374200 chr1D 89.641 946 72 10 1013 1948 414492128 414493057 0.000000e+00 1181.0
3 TraesCS1D01G374200 chr1D 88.608 79 1 5 2683 2753 476590615 476590537 4.050000e-14 89.8
4 TraesCS1D01G374200 chr1A 97.348 1169 27 2 780 1945 546316736 546315569 0.000000e+00 1984.0
5 TraesCS1D01G374200 chr1A 89.535 946 73 10 1013 1948 511276000 511276929 0.000000e+00 1175.0
6 TraesCS1D01G374200 chr1A 89.110 955 78 14 1016 1959 511146859 511145920 0.000000e+00 1164.0
7 TraesCS1D01G374200 chr1A 89.323 946 74 11 1013 1948 511158020 511158948 0.000000e+00 1162.0
8 TraesCS1D01G374200 chr1A 87.730 163 10 4 1985 2137 546315483 546315321 6.490000e-42 182.0
9 TraesCS1D01G374200 chr1A 89.333 75 7 1 1987 2061 511159049 511159122 3.130000e-15 93.5
10 TraesCS1D01G374200 chr1B 93.333 1305 34 14 787 2056 621577046 621575760 0.000000e+00 1879.0
11 TraesCS1D01G374200 chr1B 90.180 947 71 11 1009 1948 559570007 559570938 0.000000e+00 1214.0
12 TraesCS1D01G374200 chr1B 89.158 950 76 13 1013 1951 559342073 559343006 0.000000e+00 1158.0
13 TraesCS1D01G374200 chr1B 87.736 954 78 23 1016 1959 559331909 559330985 0.000000e+00 1077.0
14 TraesCS1D01G374200 chr1B 94.332 247 11 2 2446 2690 621542698 621542453 2.770000e-100 375.0
15 TraesCS1D01G374200 chr1B 94.444 198 5 3 2755 2946 621542441 621542244 1.720000e-77 300.0
16 TraesCS1D01G374200 chr1B 83.631 336 34 10 2130 2450 621575491 621575162 2.220000e-76 296.0
17 TraesCS1D01G374200 chr1B 86.154 65 4 3 2067 2126 621575658 621575594 6.820000e-07 65.8
18 TraesCS1D01G374200 chr5D 96.891 772 24 0 1 772 62144682 62145453 0.000000e+00 1293.0
19 TraesCS1D01G374200 chr5D 95.613 775 33 1 1 775 335871892 335871119 0.000000e+00 1242.0
20 TraesCS1D01G374200 chr5D 89.855 69 6 1 2686 2753 465200381 465200313 1.460000e-13 87.9
21 TraesCS1D01G374200 chr7D 96.224 768 29 0 1 768 566994435 566995202 0.000000e+00 1258.0
22 TraesCS1D01G374200 chr7D 95.876 776 31 1 1 775 528966797 528966022 0.000000e+00 1254.0
23 TraesCS1D01G374200 chr7D 95.355 775 36 0 1 775 227752482 227751708 0.000000e+00 1232.0
24 TraesCS1D01G374200 chr4A 95.984 772 29 2 1 772 42691738 42692507 0.000000e+00 1253.0
25 TraesCS1D01G374200 chr7B 95.059 769 38 0 1 769 650043557 650044325 0.000000e+00 1210.0
26 TraesCS1D01G374200 chr7B 85.897 78 10 1 2677 2753 215548882 215548805 6.770000e-12 82.4
27 TraesCS1D01G374200 chr5A 94.845 776 38 2 1 775 531690294 531689520 0.000000e+00 1210.0
28 TraesCS1D01G374200 chr3D 94.955 773 38 1 1 772 568835322 568836094 0.000000e+00 1210.0
29 TraesCS1D01G374200 chr3B 91.304 69 3 3 2688 2753 257512490 257512422 1.130000e-14 91.6
30 TraesCS1D01G374200 chr2B 88.312 77 6 3 2680 2753 111604626 111604702 4.050000e-14 89.8
31 TraesCS1D01G374200 chr2B 91.176 68 3 3 2689 2753 111604714 111604647 4.050000e-14 89.8
32 TraesCS1D01G374200 chr2B 90.909 66 6 0 2688 2753 614917218 614917153 4.050000e-14 89.8
33 TraesCS1D01G374200 chr5B 86.842 76 10 0 2675 2750 465826029 465826104 5.240000e-13 86.1
34 TraesCS1D01G374200 chr6D 88.158 76 1 7 2686 2753 429715365 429715290 1.880000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G374200 chr1D 451867769 451870716 2947 True 5445.000000 5445 100.000 1 2948 1 chr1D.!!$R2 2947
1 TraesCS1D01G374200 chr1D 414440359 414441286 927 True 1194.000000 1194 89.936 1013 1946 1 chr1D.!!$R1 933
2 TraesCS1D01G374200 chr1D 414492128 414493057 929 False 1181.000000 1181 89.641 1013 1948 1 chr1D.!!$F1 935
3 TraesCS1D01G374200 chr1A 511276000 511276929 929 False 1175.000000 1175 89.535 1013 1948 1 chr1A.!!$F1 935
4 TraesCS1D01G374200 chr1A 511145920 511146859 939 True 1164.000000 1164 89.110 1016 1959 1 chr1A.!!$R1 943
5 TraesCS1D01G374200 chr1A 546315321 546316736 1415 True 1083.000000 1984 92.539 780 2137 2 chr1A.!!$R2 1357
6 TraesCS1D01G374200 chr1A 511158020 511159122 1102 False 627.750000 1162 89.328 1013 2061 2 chr1A.!!$F2 1048
7 TraesCS1D01G374200 chr1B 559570007 559570938 931 False 1214.000000 1214 90.180 1009 1948 1 chr1B.!!$F2 939
8 TraesCS1D01G374200 chr1B 559342073 559343006 933 False 1158.000000 1158 89.158 1013 1951 1 chr1B.!!$F1 938
9 TraesCS1D01G374200 chr1B 559330985 559331909 924 True 1077.000000 1077 87.736 1016 1959 1 chr1B.!!$R1 943
10 TraesCS1D01G374200 chr1B 621575162 621577046 1884 True 746.933333 1879 87.706 787 2450 3 chr1B.!!$R3 1663
11 TraesCS1D01G374200 chr5D 62144682 62145453 771 False 1293.000000 1293 96.891 1 772 1 chr5D.!!$F1 771
12 TraesCS1D01G374200 chr5D 335871119 335871892 773 True 1242.000000 1242 95.613 1 775 1 chr5D.!!$R1 774
13 TraesCS1D01G374200 chr7D 566994435 566995202 767 False 1258.000000 1258 96.224 1 768 1 chr7D.!!$F1 767
14 TraesCS1D01G374200 chr7D 528966022 528966797 775 True 1254.000000 1254 95.876 1 775 1 chr7D.!!$R2 774
15 TraesCS1D01G374200 chr7D 227751708 227752482 774 True 1232.000000 1232 95.355 1 775 1 chr7D.!!$R1 774
16 TraesCS1D01G374200 chr4A 42691738 42692507 769 False 1253.000000 1253 95.984 1 772 1 chr4A.!!$F1 771
17 TraesCS1D01G374200 chr7B 650043557 650044325 768 False 1210.000000 1210 95.059 1 769 1 chr7B.!!$F1 768
18 TraesCS1D01G374200 chr5A 531689520 531690294 774 True 1210.000000 1210 94.845 1 775 1 chr5A.!!$R1 774
19 TraesCS1D01G374200 chr3D 568835322 568836094 772 False 1210.000000 1210 94.955 1 772 1 chr3D.!!$F1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 787 0.104304 CGCACGGGCCTAGTCTTTAT 59.896 55.0 2.82 0.0 36.38 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2639 2959 0.249573 TCGCCCGTCCGGATAAAATC 60.25 55.0 7.81 0.0 37.5 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.729187 AGTCAAAACTCAGATAACTTGCAAC 58.271 36.000 0.00 0.00 0.00 4.17
238 240 5.698545 GGTAACTTGCACATGCCAATAAAAA 59.301 36.000 0.49 0.00 41.18 1.94
311 313 8.962884 TGTGCTAATAAAAGAGAATATGCTGA 57.037 30.769 0.00 0.00 0.00 4.26
374 378 9.612620 CGCAAAAATAGTCAAAGAGAATAAACT 57.387 29.630 0.00 0.00 29.60 2.66
473 477 1.588139 CCTCCGGTTACATCGTCGC 60.588 63.158 0.00 0.00 0.00 5.19
539 544 4.339872 AGCAACCAAATGAGAATGCAAA 57.660 36.364 0.00 0.00 36.30 3.68
597 602 2.040544 GCATCAGTTGGGTGGTCGG 61.041 63.158 0.00 0.00 0.00 4.79
614 619 2.203153 GCACCACACCGACCAACT 60.203 61.111 0.00 0.00 0.00 3.16
666 671 1.247567 GGCAGAAAACAGGCTAAGCA 58.752 50.000 0.00 0.00 0.00 3.91
727 732 2.082140 AGAGTGTGTGCGGGGATATA 57.918 50.000 0.00 0.00 0.00 0.86
758 763 6.706270 TGCTGAGATATTATTTTCCTTCCGTC 59.294 38.462 0.00 0.00 0.00 4.79
776 781 2.575461 GTAACGCACGGGCCTAGT 59.425 61.111 2.82 0.00 36.38 2.57
777 782 1.517913 GTAACGCACGGGCCTAGTC 60.518 63.158 2.82 0.00 36.38 2.59
778 783 1.679977 TAACGCACGGGCCTAGTCT 60.680 57.895 2.82 0.00 36.38 3.24
779 784 1.252904 TAACGCACGGGCCTAGTCTT 61.253 55.000 2.82 0.00 36.38 3.01
780 785 2.108278 AACGCACGGGCCTAGTCTTT 62.108 55.000 2.82 0.00 36.38 2.52
781 786 1.252904 ACGCACGGGCCTAGTCTTTA 61.253 55.000 2.82 0.00 36.38 1.85
782 787 0.104304 CGCACGGGCCTAGTCTTTAT 59.896 55.000 2.82 0.00 36.38 1.40
783 788 1.338973 CGCACGGGCCTAGTCTTTATA 59.661 52.381 2.82 0.00 36.38 0.98
784 789 2.223876 CGCACGGGCCTAGTCTTTATAA 60.224 50.000 2.82 0.00 36.38 0.98
785 790 3.391049 GCACGGGCCTAGTCTTTATAAG 58.609 50.000 0.00 0.00 0.00 1.73
890 895 4.201679 TCGCCGCACCGACCTATG 62.202 66.667 0.00 0.00 31.36 2.23
893 898 2.417516 CCGCACCGACCTATGAGG 59.582 66.667 0.00 0.00 42.49 3.86
929 934 1.156095 CCCAGCTTCCCAAACCCTT 59.844 57.895 0.00 0.00 0.00 3.95
1139 1148 0.456221 CACTACATCGACGAGGGCTT 59.544 55.000 14.64 0.00 0.00 4.35
1950 1968 1.880340 GATGCTCTTCGCCTGACCG 60.880 63.158 0.00 0.00 38.05 4.79
1951 1969 4.742201 TGCTCTTCGCCTGACCGC 62.742 66.667 0.00 0.00 38.05 5.68
2017 2121 4.770795 TCTTGGGCAACTATCTTAAGCTC 58.229 43.478 0.00 0.00 0.00 4.09
2102 2308 6.295039 TCGTTTGTTCCAGTTAAACTCATC 57.705 37.500 0.00 0.00 33.37 2.92
2145 2450 6.607004 ATCCAGTTTGCTAACTACACTACT 57.393 37.500 13.23 0.00 42.67 2.57
2146 2451 5.779922 TCCAGTTTGCTAACTACACTACTG 58.220 41.667 13.23 0.00 42.67 2.74
2168 2475 5.663456 TGTGAATGATCGATCTCATGAACA 58.337 37.500 25.02 16.60 36.03 3.18
2169 2476 6.108015 TGTGAATGATCGATCTCATGAACAA 58.892 36.000 25.02 2.92 36.03 2.83
2181 2488 7.254590 CGATCTCATGAACAAGAGGGTAATTTC 60.255 40.741 0.00 0.00 32.76 2.17
2185 2492 5.155278 TGAACAAGAGGGTAATTTCGCTA 57.845 39.130 1.55 0.00 0.00 4.26
2197 2505 6.148976 GGGTAATTTCGCTAACTTTTGTCTCT 59.851 38.462 0.00 0.00 0.00 3.10
2212 2520 1.226717 CTCTAGGCGGCGACACTTC 60.227 63.158 18.30 0.00 0.00 3.01
2231 2539 2.846193 TCGATATGGGCTAGGCAAAAC 58.154 47.619 19.14 0.67 0.00 2.43
2238 2547 2.825532 TGGGCTAGGCAAAACTCAAATC 59.174 45.455 19.14 0.00 0.00 2.17
2251 2560 7.011295 GCAAAACTCAAATCTGGTTGAATTTCA 59.989 33.333 0.00 0.00 36.28 2.69
2269 2578 6.729690 ATTTCATTGAAACTGGAACCAGAA 57.270 33.333 25.03 10.76 46.12 3.02
2271 2580 7.831691 TTTCATTGAAACTGGAACCAGAATA 57.168 32.000 25.03 7.57 46.30 1.75
2272 2581 8.421249 TTTCATTGAAACTGGAACCAGAATAT 57.579 30.769 25.03 9.35 46.30 1.28
2273 2582 7.395190 TCATTGAAACTGGAACCAGAATATG 57.605 36.000 25.03 18.04 46.30 1.78
2320 2640 6.505044 AGTTAATTTCACGGTAATTGGACC 57.495 37.500 0.28 0.00 36.00 4.46
2338 2658 8.887036 ATTGGACCAAAAACTAAATCAGAAAC 57.113 30.769 11.82 0.00 0.00 2.78
2408 2728 1.068588 CGTTCTTGTCAGGTGAGGTCA 59.931 52.381 0.00 0.00 0.00 4.02
2425 2745 5.413523 TGAGGTCATCTGACAAATTCATGTG 59.586 40.000 12.10 0.00 46.47 3.21
2427 2747 4.418392 GTCATCTGACAAATTCATGTGGC 58.582 43.478 5.46 0.00 44.18 5.01
2430 2750 5.186215 TCATCTGACAAATTCATGTGGCAAT 59.814 36.000 0.00 0.00 30.70 3.56
2431 2751 4.811908 TCTGACAAATTCATGTGGCAATG 58.188 39.130 0.00 0.00 30.70 2.82
2432 2752 4.281435 TCTGACAAATTCATGTGGCAATGT 59.719 37.500 0.00 0.00 30.70 2.71
2433 2753 5.476254 TCTGACAAATTCATGTGGCAATGTA 59.524 36.000 0.00 0.00 30.70 2.29
2434 2754 5.468592 TGACAAATTCATGTGGCAATGTAC 58.531 37.500 0.00 0.00 32.57 2.90
2435 2755 5.243507 TGACAAATTCATGTGGCAATGTACT 59.756 36.000 0.00 0.00 32.57 2.73
2450 2770 2.876091 TGTACTGAAAGAATCGCCTCG 58.124 47.619 0.00 0.00 37.43 4.63
2451 2771 2.230508 TGTACTGAAAGAATCGCCTCGT 59.769 45.455 0.00 0.00 37.43 4.18
2452 2772 1.714794 ACTGAAAGAATCGCCTCGTG 58.285 50.000 0.00 0.00 37.43 4.35
2453 2773 1.000955 ACTGAAAGAATCGCCTCGTGT 59.999 47.619 0.00 0.00 37.43 4.49
2454 2774 2.069273 CTGAAAGAATCGCCTCGTGTT 58.931 47.619 0.00 0.00 34.07 3.32
2455 2775 3.250744 CTGAAAGAATCGCCTCGTGTTA 58.749 45.455 0.00 0.00 34.07 2.41
2456 2776 3.655486 TGAAAGAATCGCCTCGTGTTAA 58.345 40.909 0.00 0.00 0.00 2.01
2457 2777 4.250464 TGAAAGAATCGCCTCGTGTTAAT 58.750 39.130 0.00 0.00 0.00 1.40
2458 2778 5.412640 TGAAAGAATCGCCTCGTGTTAATA 58.587 37.500 0.00 0.00 0.00 0.98
2459 2779 5.870433 TGAAAGAATCGCCTCGTGTTAATAA 59.130 36.000 0.00 0.00 0.00 1.40
2460 2780 5.713822 AAGAATCGCCTCGTGTTAATAAC 57.286 39.130 0.00 0.00 0.00 1.89
2461 2781 4.117685 AGAATCGCCTCGTGTTAATAACC 58.882 43.478 0.18 0.00 0.00 2.85
2462 2782 3.530265 ATCGCCTCGTGTTAATAACCA 57.470 42.857 0.18 0.00 0.00 3.67
2463 2783 3.316071 TCGCCTCGTGTTAATAACCAA 57.684 42.857 0.18 0.00 0.00 3.67
2464 2784 3.864243 TCGCCTCGTGTTAATAACCAAT 58.136 40.909 0.18 0.00 0.00 3.16
2465 2785 4.255301 TCGCCTCGTGTTAATAACCAATT 58.745 39.130 0.18 0.00 0.00 2.32
2466 2786 4.093703 TCGCCTCGTGTTAATAACCAATTG 59.906 41.667 0.00 0.00 0.00 2.32
2467 2787 4.093703 CGCCTCGTGTTAATAACCAATTGA 59.906 41.667 7.12 0.00 0.00 2.57
2468 2788 5.391097 CGCCTCGTGTTAATAACCAATTGAA 60.391 40.000 7.12 0.00 0.00 2.69
2469 2789 6.027749 GCCTCGTGTTAATAACCAATTGAAG 58.972 40.000 7.12 0.00 0.00 3.02
2470 2790 6.551736 CCTCGTGTTAATAACCAATTGAAGG 58.448 40.000 7.12 0.00 0.00 3.46
2471 2791 6.373216 CCTCGTGTTAATAACCAATTGAAGGA 59.627 38.462 7.12 0.00 0.00 3.36
2472 2792 7.094549 CCTCGTGTTAATAACCAATTGAAGGAA 60.095 37.037 7.12 0.00 0.00 3.36
2473 2793 8.343168 TCGTGTTAATAACCAATTGAAGGAAT 57.657 30.769 7.12 0.00 0.00 3.01
2474 2794 8.455682 TCGTGTTAATAACCAATTGAAGGAATC 58.544 33.333 7.12 0.00 0.00 2.52
2475 2795 8.458843 CGTGTTAATAACCAATTGAAGGAATCT 58.541 33.333 7.12 0.00 0.00 2.40
2476 2796 9.573133 GTGTTAATAACCAATTGAAGGAATCTG 57.427 33.333 7.12 0.00 0.00 2.90
2477 2797 9.527157 TGTTAATAACCAATTGAAGGAATCTGA 57.473 29.630 7.12 0.00 0.00 3.27
2478 2798 9.788960 GTTAATAACCAATTGAAGGAATCTGAC 57.211 33.333 7.12 0.00 0.00 3.51
2479 2799 9.527157 TTAATAACCAATTGAAGGAATCTGACA 57.473 29.630 7.12 0.00 0.00 3.58
2480 2800 8.599624 AATAACCAATTGAAGGAATCTGACAT 57.400 30.769 7.12 0.00 0.00 3.06
2481 2801 5.909621 ACCAATTGAAGGAATCTGACATG 57.090 39.130 7.12 0.00 0.00 3.21
2482 2802 4.708421 ACCAATTGAAGGAATCTGACATGG 59.292 41.667 7.12 0.00 0.00 3.66
2483 2803 4.951715 CCAATTGAAGGAATCTGACATGGA 59.048 41.667 7.12 0.00 0.00 3.41
2484 2804 5.597182 CCAATTGAAGGAATCTGACATGGAT 59.403 40.000 7.12 0.00 0.00 3.41
2485 2805 6.097839 CCAATTGAAGGAATCTGACATGGATT 59.902 38.462 7.12 0.00 36.29 3.01
2486 2806 6.710597 ATTGAAGGAATCTGACATGGATTG 57.289 37.500 0.00 0.00 34.09 2.67
2487 2807 3.949754 TGAAGGAATCTGACATGGATTGC 59.050 43.478 0.00 2.16 40.29 3.56
2488 2808 3.947612 AGGAATCTGACATGGATTGCT 57.052 42.857 10.13 10.13 43.51 3.91
2489 2809 3.552875 AGGAATCTGACATGGATTGCTG 58.447 45.455 13.68 0.00 45.42 4.41
2490 2810 3.201487 AGGAATCTGACATGGATTGCTGA 59.799 43.478 13.68 1.75 45.42 4.26
2491 2811 3.564644 GGAATCTGACATGGATTGCTGAG 59.435 47.826 0.00 0.00 38.11 3.35
2492 2812 2.704464 TCTGACATGGATTGCTGAGG 57.296 50.000 0.00 0.00 0.00 3.86
2493 2813 1.911357 TCTGACATGGATTGCTGAGGT 59.089 47.619 0.00 0.00 0.00 3.85
2494 2814 2.014857 CTGACATGGATTGCTGAGGTG 58.985 52.381 0.00 0.00 0.00 4.00
2495 2815 1.629861 TGACATGGATTGCTGAGGTGA 59.370 47.619 0.00 0.00 0.00 4.02
2496 2816 2.240414 TGACATGGATTGCTGAGGTGAT 59.760 45.455 0.00 0.00 0.00 3.06
2497 2817 2.617308 GACATGGATTGCTGAGGTGATG 59.383 50.000 0.00 0.00 0.00 3.07
2498 2818 2.025605 ACATGGATTGCTGAGGTGATGT 60.026 45.455 0.00 0.00 0.00 3.06
2499 2819 2.885135 TGGATTGCTGAGGTGATGTT 57.115 45.000 0.00 0.00 0.00 2.71
2500 2820 3.998913 TGGATTGCTGAGGTGATGTTA 57.001 42.857 0.00 0.00 0.00 2.41
2501 2821 3.877559 TGGATTGCTGAGGTGATGTTAG 58.122 45.455 0.00 0.00 0.00 2.34
2502 2822 3.264193 TGGATTGCTGAGGTGATGTTAGT 59.736 43.478 0.00 0.00 0.00 2.24
2503 2823 3.873952 GGATTGCTGAGGTGATGTTAGTC 59.126 47.826 0.00 0.00 0.00 2.59
2504 2824 4.507710 GATTGCTGAGGTGATGTTAGTCA 58.492 43.478 0.00 0.00 0.00 3.41
2505 2825 3.319137 TGCTGAGGTGATGTTAGTCAC 57.681 47.619 0.00 0.00 46.04 3.67
2514 2834 5.718649 GTGATGTTAGTCACGCATGTTAT 57.281 39.130 0.00 0.00 39.12 1.89
2515 2835 6.106877 GTGATGTTAGTCACGCATGTTATT 57.893 37.500 0.00 0.00 39.12 1.40
2516 2836 6.542852 GTGATGTTAGTCACGCATGTTATTT 58.457 36.000 0.00 0.00 39.12 1.40
2517 2837 6.465781 GTGATGTTAGTCACGCATGTTATTTG 59.534 38.462 0.00 0.00 39.12 2.32
2518 2838 4.717991 TGTTAGTCACGCATGTTATTTGC 58.282 39.130 0.00 0.00 36.74 3.68
2519 2839 2.919666 AGTCACGCATGTTATTTGCC 57.080 45.000 0.00 0.00 36.75 4.52
2520 2840 2.158559 AGTCACGCATGTTATTTGCCA 58.841 42.857 0.00 0.00 36.75 4.92
2521 2841 2.162208 AGTCACGCATGTTATTTGCCAG 59.838 45.455 0.00 0.00 36.75 4.85
2522 2842 2.095263 GTCACGCATGTTATTTGCCAGT 60.095 45.455 0.00 0.00 36.75 4.00
2523 2843 2.161410 TCACGCATGTTATTTGCCAGTC 59.839 45.455 0.00 0.00 36.75 3.51
2524 2844 2.162208 CACGCATGTTATTTGCCAGTCT 59.838 45.455 0.00 0.00 36.75 3.24
2525 2845 3.373748 CACGCATGTTATTTGCCAGTCTA 59.626 43.478 0.00 0.00 36.75 2.59
2526 2846 4.035558 CACGCATGTTATTTGCCAGTCTAT 59.964 41.667 0.00 0.00 36.75 1.98
2527 2847 5.236263 CACGCATGTTATTTGCCAGTCTATA 59.764 40.000 0.00 0.00 36.75 1.31
2528 2848 5.820423 ACGCATGTTATTTGCCAGTCTATAA 59.180 36.000 0.00 0.00 36.75 0.98
2529 2849 6.486657 ACGCATGTTATTTGCCAGTCTATAAT 59.513 34.615 0.00 0.00 36.75 1.28
2530 2850 6.798476 CGCATGTTATTTGCCAGTCTATAATG 59.202 38.462 0.00 0.00 36.75 1.90
2531 2851 7.307930 CGCATGTTATTTGCCAGTCTATAATGA 60.308 37.037 0.00 0.00 36.75 2.57
2532 2852 8.352201 GCATGTTATTTGCCAGTCTATAATGAA 58.648 33.333 0.00 0.00 33.95 2.57
2536 2856 9.683069 GTTATTTGCCAGTCTATAATGAATTGG 57.317 33.333 0.00 0.00 0.00 3.16
2537 2857 9.639563 TTATTTGCCAGTCTATAATGAATTGGA 57.360 29.630 0.00 0.00 0.00 3.53
2538 2858 6.942532 TTGCCAGTCTATAATGAATTGGAC 57.057 37.500 0.00 0.00 0.00 4.02
2539 2859 6.000246 TGCCAGTCTATAATGAATTGGACA 58.000 37.500 0.00 0.00 0.00 4.02
2540 2860 6.604171 TGCCAGTCTATAATGAATTGGACAT 58.396 36.000 0.00 0.00 0.00 3.06
2541 2861 7.062322 TGCCAGTCTATAATGAATTGGACATT 58.938 34.615 0.00 0.00 40.40 2.71
2542 2862 7.229306 TGCCAGTCTATAATGAATTGGACATTC 59.771 37.037 0.00 0.00 38.61 2.67
2543 2863 7.229306 GCCAGTCTATAATGAATTGGACATTCA 59.771 37.037 0.00 0.00 41.59 2.57
2544 2864 8.781196 CCAGTCTATAATGAATTGGACATTCAG 58.219 37.037 3.80 0.00 40.80 3.02
2545 2865 8.781196 CAGTCTATAATGAATTGGACATTCAGG 58.219 37.037 3.80 0.00 40.80 3.86
2546 2866 7.941238 AGTCTATAATGAATTGGACATTCAGGG 59.059 37.037 3.80 0.00 40.80 4.45
2547 2867 5.796424 ATAATGAATTGGACATTCAGGGC 57.204 39.130 3.80 0.00 40.80 5.19
2548 2868 1.462616 TGAATTGGACATTCAGGGCG 58.537 50.000 0.00 0.00 33.55 6.13
2549 2869 0.740737 GAATTGGACATTCAGGGCGG 59.259 55.000 0.00 0.00 0.00 6.13
2550 2870 0.684153 AATTGGACATTCAGGGCGGG 60.684 55.000 0.00 0.00 0.00 6.13
2551 2871 2.572333 ATTGGACATTCAGGGCGGGG 62.572 60.000 0.00 0.00 0.00 5.73
2552 2872 3.407967 GGACATTCAGGGCGGGGA 61.408 66.667 0.00 0.00 0.00 4.81
2553 2873 2.674754 GACATTCAGGGCGGGGAA 59.325 61.111 0.00 0.00 0.00 3.97
2554 2874 1.001393 GACATTCAGGGCGGGGAAA 60.001 57.895 0.00 0.00 0.00 3.13
2555 2875 0.395724 GACATTCAGGGCGGGGAAAT 60.396 55.000 0.00 0.00 0.00 2.17
2556 2876 0.395724 ACATTCAGGGCGGGGAAATC 60.396 55.000 0.00 0.00 0.00 2.17
2557 2877 0.395586 CATTCAGGGCGGGGAAATCA 60.396 55.000 0.00 0.00 0.00 2.57
2558 2878 0.557729 ATTCAGGGCGGGGAAATCAT 59.442 50.000 0.00 0.00 0.00 2.45
2559 2879 0.334676 TTCAGGGCGGGGAAATCATT 59.665 50.000 0.00 0.00 0.00 2.57
2560 2880 1.217916 TCAGGGCGGGGAAATCATTA 58.782 50.000 0.00 0.00 0.00 1.90
2561 2881 1.133915 TCAGGGCGGGGAAATCATTAC 60.134 52.381 0.00 0.00 0.00 1.89
2562 2882 0.923358 AGGGCGGGGAAATCATTACA 59.077 50.000 0.00 0.00 0.00 2.41
2563 2883 1.499007 AGGGCGGGGAAATCATTACAT 59.501 47.619 0.00 0.00 0.00 2.29
2564 2884 1.886542 GGGCGGGGAAATCATTACATC 59.113 52.381 0.00 0.00 0.00 3.06
2565 2885 2.489073 GGGCGGGGAAATCATTACATCT 60.489 50.000 0.00 0.00 0.00 2.90
2566 2886 3.222603 GGCGGGGAAATCATTACATCTT 58.777 45.455 0.00 0.00 0.00 2.40
2567 2887 3.253432 GGCGGGGAAATCATTACATCTTC 59.747 47.826 0.00 0.00 0.00 2.87
2568 2888 3.882888 GCGGGGAAATCATTACATCTTCA 59.117 43.478 0.00 0.00 0.00 3.02
2569 2889 4.520492 GCGGGGAAATCATTACATCTTCAT 59.480 41.667 0.00 0.00 0.00 2.57
2570 2890 5.563475 GCGGGGAAATCATTACATCTTCATG 60.563 44.000 0.00 0.00 35.92 3.07
2571 2891 5.532406 CGGGGAAATCATTACATCTTCATGT 59.468 40.000 0.00 0.00 45.73 3.21
2572 2892 6.039717 CGGGGAAATCATTACATCTTCATGTT 59.960 38.462 0.00 0.00 40.66 2.71
2573 2893 7.205297 GGGGAAATCATTACATCTTCATGTTG 58.795 38.462 0.00 0.00 40.66 3.33
2574 2894 7.068593 GGGGAAATCATTACATCTTCATGTTGA 59.931 37.037 0.00 0.00 40.66 3.18
2575 2895 8.469200 GGGAAATCATTACATCTTCATGTTGAA 58.531 33.333 0.00 0.00 40.66 2.69
2580 2900 8.158169 TCATTACATCTTCATGTTGAATAGGC 57.842 34.615 0.00 0.00 40.66 3.93
2581 2901 6.603237 TTACATCTTCATGTTGAATAGGCG 57.397 37.500 0.00 0.00 40.66 5.52
2582 2902 3.313526 ACATCTTCATGTTGAATAGGCGC 59.686 43.478 0.00 0.00 40.66 6.53
2583 2903 2.984562 TCTTCATGTTGAATAGGCGCA 58.015 42.857 10.83 0.00 35.59 6.09
2584 2904 3.544684 TCTTCATGTTGAATAGGCGCAT 58.455 40.909 10.83 3.98 35.59 4.73
2585 2905 4.702831 TCTTCATGTTGAATAGGCGCATA 58.297 39.130 10.83 7.12 35.59 3.14
2586 2906 5.122519 TCTTCATGTTGAATAGGCGCATAA 58.877 37.500 10.83 0.00 35.59 1.90
2587 2907 5.588246 TCTTCATGTTGAATAGGCGCATAAA 59.412 36.000 10.83 0.00 35.59 1.40
2588 2908 5.422666 TCATGTTGAATAGGCGCATAAAG 57.577 39.130 10.83 0.00 0.00 1.85
2589 2909 5.122519 TCATGTTGAATAGGCGCATAAAGA 58.877 37.500 10.83 0.00 0.00 2.52
2590 2910 5.237127 TCATGTTGAATAGGCGCATAAAGAG 59.763 40.000 10.83 0.00 0.00 2.85
2591 2911 4.513442 TGTTGAATAGGCGCATAAAGAGT 58.487 39.130 10.83 0.00 0.00 3.24
2592 2912 4.941263 TGTTGAATAGGCGCATAAAGAGTT 59.059 37.500 10.83 0.00 0.00 3.01
2593 2913 5.163764 TGTTGAATAGGCGCATAAAGAGTTG 60.164 40.000 10.83 0.00 0.00 3.16
2594 2914 3.312421 TGAATAGGCGCATAAAGAGTTGC 59.688 43.478 10.83 0.00 35.50 4.17
2595 2915 2.394930 TAGGCGCATAAAGAGTTGCA 57.605 45.000 10.83 0.00 38.80 4.08
2596 2916 1.089920 AGGCGCATAAAGAGTTGCAG 58.910 50.000 10.83 0.00 38.80 4.41
2597 2917 1.086696 GGCGCATAAAGAGTTGCAGA 58.913 50.000 10.83 0.00 38.80 4.26
2598 2918 1.672881 GGCGCATAAAGAGTTGCAGAT 59.327 47.619 10.83 0.00 38.80 2.90
2599 2919 2.098117 GGCGCATAAAGAGTTGCAGATT 59.902 45.455 10.83 0.00 38.80 2.40
2600 2920 3.357897 GCGCATAAAGAGTTGCAGATTC 58.642 45.455 0.30 0.00 38.80 2.52
2601 2921 3.181507 GCGCATAAAGAGTTGCAGATTCA 60.182 43.478 0.30 0.00 38.80 2.57
2602 2922 4.337763 CGCATAAAGAGTTGCAGATTCAC 58.662 43.478 0.00 0.00 38.80 3.18
2603 2923 4.093998 CGCATAAAGAGTTGCAGATTCACT 59.906 41.667 0.00 0.00 38.80 3.41
2604 2924 5.291858 CGCATAAAGAGTTGCAGATTCACTA 59.708 40.000 0.00 0.00 38.80 2.74
2605 2925 6.481984 GCATAAAGAGTTGCAGATTCACTAC 58.518 40.000 0.00 0.00 38.72 2.73
2606 2926 6.092670 GCATAAAGAGTTGCAGATTCACTACA 59.907 38.462 0.00 0.00 38.72 2.74
2607 2927 5.931441 AAAGAGTTGCAGATTCACTACAC 57.069 39.130 0.00 0.00 0.00 2.90
2608 2928 3.931578 AGAGTTGCAGATTCACTACACC 58.068 45.455 0.00 0.00 0.00 4.16
2609 2929 3.324846 AGAGTTGCAGATTCACTACACCA 59.675 43.478 0.00 0.00 0.00 4.17
2610 2930 4.065088 GAGTTGCAGATTCACTACACCAA 58.935 43.478 0.00 0.00 0.00 3.67
2611 2931 4.460263 AGTTGCAGATTCACTACACCAAA 58.540 39.130 0.00 0.00 0.00 3.28
2612 2932 4.275936 AGTTGCAGATTCACTACACCAAAC 59.724 41.667 0.00 0.00 0.00 2.93
2613 2933 3.814625 TGCAGATTCACTACACCAAACA 58.185 40.909 0.00 0.00 0.00 2.83
2614 2934 4.203226 TGCAGATTCACTACACCAAACAA 58.797 39.130 0.00 0.00 0.00 2.83
2615 2935 4.642437 TGCAGATTCACTACACCAAACAAA 59.358 37.500 0.00 0.00 0.00 2.83
2616 2936 5.215160 GCAGATTCACTACACCAAACAAAG 58.785 41.667 0.00 0.00 0.00 2.77
2617 2937 5.221048 GCAGATTCACTACACCAAACAAAGT 60.221 40.000 0.00 0.00 0.00 2.66
2618 2938 6.017440 GCAGATTCACTACACCAAACAAAGTA 60.017 38.462 0.00 0.00 0.00 2.24
2619 2939 7.352739 CAGATTCACTACACCAAACAAAGTAC 58.647 38.462 0.00 0.00 0.00 2.73
2620 2940 7.226720 CAGATTCACTACACCAAACAAAGTACT 59.773 37.037 0.00 0.00 0.00 2.73
2621 2941 7.773690 AGATTCACTACACCAAACAAAGTACTT 59.226 33.333 1.12 1.12 0.00 2.24
2622 2942 8.967664 ATTCACTACACCAAACAAAGTACTTA 57.032 30.769 8.92 0.00 0.00 2.24
2623 2943 8.967664 TTCACTACACCAAACAAAGTACTTAT 57.032 30.769 8.92 0.00 0.00 1.73
2627 2947 9.835389 ACTACACCAAACAAAGTACTTATAACA 57.165 29.630 8.92 0.00 0.00 2.41
2656 2976 2.625375 GGATTTTATCCGGACGGGC 58.375 57.895 6.12 0.00 40.13 6.13
2657 2977 1.226030 GGATTTTATCCGGACGGGCG 61.226 60.000 6.12 0.00 40.13 6.13
2658 2978 0.249573 GATTTTATCCGGACGGGCGA 60.250 55.000 6.12 0.00 34.94 5.54
2659 2979 0.531311 ATTTTATCCGGACGGGCGAC 60.531 55.000 6.12 0.00 34.94 5.19
2660 2980 1.886253 TTTTATCCGGACGGGCGACA 61.886 55.000 6.12 0.00 34.94 4.35
2661 2981 2.287457 TTTATCCGGACGGGCGACAG 62.287 60.000 6.12 0.00 34.94 3.51
2662 2982 3.702529 TATCCGGACGGGCGACAGA 62.703 63.158 6.12 0.00 34.94 3.41
2663 2983 2.971095 TATCCGGACGGGCGACAGAT 62.971 60.000 6.12 0.00 34.94 2.90
2664 2984 4.873129 CCGGACGGGCGACAGATG 62.873 72.222 0.00 0.00 0.00 2.90
2665 2985 4.129737 CGGACGGGCGACAGATGT 62.130 66.667 0.00 0.00 0.00 3.06
2666 2986 2.202756 GGACGGGCGACAGATGTC 60.203 66.667 0.00 2.78 41.47 3.06
2667 2987 2.202756 GACGGGCGACAGATGTCC 60.203 66.667 7.37 0.92 41.86 4.02
2668 2988 2.680352 ACGGGCGACAGATGTCCT 60.680 61.111 7.37 0.00 41.86 3.85
2669 2989 2.227089 GACGGGCGACAGATGTCCTT 62.227 60.000 7.37 0.00 41.86 3.36
2670 2990 1.079127 CGGGCGACAGATGTCCTTT 60.079 57.895 7.37 0.00 41.86 3.11
2671 2991 0.673644 CGGGCGACAGATGTCCTTTT 60.674 55.000 7.37 0.00 41.86 2.27
2672 2992 1.534729 GGGCGACAGATGTCCTTTTT 58.465 50.000 7.37 0.00 41.86 1.94
2673 2993 2.706890 GGGCGACAGATGTCCTTTTTA 58.293 47.619 7.37 0.00 41.86 1.52
2674 2994 3.078837 GGGCGACAGATGTCCTTTTTAA 58.921 45.455 7.37 0.00 41.86 1.52
2675 2995 3.119955 GGGCGACAGATGTCCTTTTTAAC 60.120 47.826 7.37 0.00 41.86 2.01
2676 2996 3.751698 GGCGACAGATGTCCTTTTTAACT 59.248 43.478 7.37 0.00 41.86 2.24
2677 2997 4.933400 GGCGACAGATGTCCTTTTTAACTA 59.067 41.667 7.37 0.00 41.86 2.24
2678 2998 5.410439 GGCGACAGATGTCCTTTTTAACTAA 59.590 40.000 7.37 0.00 41.86 2.24
2679 2999 6.093633 GGCGACAGATGTCCTTTTTAACTAAT 59.906 38.462 7.37 0.00 41.86 1.73
2680 3000 7.361799 GGCGACAGATGTCCTTTTTAACTAATT 60.362 37.037 7.37 0.00 41.86 1.40
2681 3001 8.021396 GCGACAGATGTCCTTTTTAACTAATTT 58.979 33.333 7.37 0.00 41.86 1.82
2700 3020 9.993454 ACTAATTTATTAAATACTCCCTCCGTC 57.007 33.333 2.16 0.00 0.00 4.79
2701 3021 9.433153 CTAATTTATTAAATACTCCCTCCGTCC 57.567 37.037 2.16 0.00 0.00 4.79
2702 3022 5.813513 TTATTAAATACTCCCTCCGTCCC 57.186 43.478 0.00 0.00 0.00 4.46
2703 3023 2.852714 TAAATACTCCCTCCGTCCCA 57.147 50.000 0.00 0.00 0.00 4.37
2704 3024 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
2705 3025 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
2706 3026 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
2707 3027 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2708 3028 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2709 3029 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2710 3030 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2711 3031 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2712 3032 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2713 3033 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2714 3034 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2715 3035 3.386726 CCTCCGTCCCATAATGTAAGACA 59.613 47.826 0.00 0.00 0.00 3.41
2716 3036 4.040461 CCTCCGTCCCATAATGTAAGACAT 59.960 45.833 0.00 0.00 41.31 3.06
2718 3038 5.996644 TCCGTCCCATAATGTAAGACATTT 58.003 37.500 9.92 0.00 45.80 2.32
2719 3039 6.419791 TCCGTCCCATAATGTAAGACATTTT 58.580 36.000 9.92 0.33 45.80 1.82
2720 3040 6.887545 TCCGTCCCATAATGTAAGACATTTTT 59.112 34.615 9.92 0.00 45.80 1.94
2757 3077 8.664669 AAAAACATCTTACATTATGGGGACTT 57.335 30.769 0.00 0.00 0.00 3.01
2758 3078 8.664669 AAAACATCTTACATTATGGGGACTTT 57.335 30.769 0.00 0.00 0.00 2.66
2759 3079 7.645058 AACATCTTACATTATGGGGACTTTG 57.355 36.000 0.00 0.00 0.00 2.77
2760 3080 6.731467 ACATCTTACATTATGGGGACTTTGT 58.269 36.000 0.00 0.00 0.00 2.83
2761 3081 6.828785 ACATCTTACATTATGGGGACTTTGTC 59.171 38.462 0.00 0.00 0.00 3.18
2762 3082 5.424757 TCTTACATTATGGGGACTTTGTCG 58.575 41.667 0.00 0.00 32.65 4.35
2763 3083 2.365582 ACATTATGGGGACTTTGTCGC 58.634 47.619 6.27 6.27 43.35 5.19
2764 3084 2.026262 ACATTATGGGGACTTTGTCGCT 60.026 45.455 13.04 0.00 43.54 4.93
2765 3085 2.107950 TTATGGGGACTTTGTCGCTG 57.892 50.000 13.04 0.00 43.54 5.18
2766 3086 0.392461 TATGGGGACTTTGTCGCTGC 60.392 55.000 13.04 0.00 43.54 5.25
2767 3087 2.032681 GGGGACTTTGTCGCTGCT 59.967 61.111 13.04 0.00 43.54 4.24
2768 3088 1.600916 GGGGACTTTGTCGCTGCTT 60.601 57.895 13.04 0.00 43.54 3.91
2769 3089 1.576421 GGGACTTTGTCGCTGCTTG 59.424 57.895 7.38 0.00 41.34 4.01
2770 3090 1.081840 GGACTTTGTCGCTGCTTGC 60.082 57.895 0.00 0.00 32.65 4.01
2771 3091 1.648720 GACTTTGTCGCTGCTTGCA 59.351 52.632 0.00 0.00 43.06 4.08
2772 3092 0.239347 GACTTTGTCGCTGCTTGCAT 59.761 50.000 0.00 0.00 43.06 3.96
2773 3093 0.039798 ACTTTGTCGCTGCTTGCATG 60.040 50.000 0.00 0.00 43.06 4.06
2774 3094 1.342082 CTTTGTCGCTGCTTGCATGC 61.342 55.000 17.19 17.19 43.06 4.06
2778 3098 2.276868 CGCTGCTTGCATGCGTAC 60.277 61.111 18.54 9.96 44.00 3.67
2779 3099 2.743752 CGCTGCTTGCATGCGTACT 61.744 57.895 18.54 0.00 44.00 2.73
2780 3100 1.503542 GCTGCTTGCATGCGTACTT 59.496 52.632 18.54 0.00 42.31 2.24
2781 3101 0.726827 GCTGCTTGCATGCGTACTTA 59.273 50.000 18.54 0.44 42.31 2.24
2782 3102 1.130373 GCTGCTTGCATGCGTACTTAA 59.870 47.619 18.54 0.00 42.31 1.85
2783 3103 2.774007 CTGCTTGCATGCGTACTTAAC 58.226 47.619 18.54 0.00 35.36 2.01
2796 3116 4.778842 GTACTTAACGATGTCCTGCATG 57.221 45.455 0.00 0.00 38.06 4.06
2797 3117 3.334583 ACTTAACGATGTCCTGCATGT 57.665 42.857 0.00 0.00 38.06 3.21
2798 3118 3.674997 ACTTAACGATGTCCTGCATGTT 58.325 40.909 0.00 0.00 38.06 2.71
2799 3119 4.827692 ACTTAACGATGTCCTGCATGTTA 58.172 39.130 0.00 0.00 38.06 2.41
2800 3120 5.428253 ACTTAACGATGTCCTGCATGTTAT 58.572 37.500 0.00 0.00 38.06 1.89
2801 3121 6.578944 ACTTAACGATGTCCTGCATGTTATA 58.421 36.000 0.00 0.00 38.06 0.98
2802 3122 7.045416 ACTTAACGATGTCCTGCATGTTATAA 58.955 34.615 0.00 0.00 38.06 0.98
2803 3123 7.551262 ACTTAACGATGTCCTGCATGTTATAAA 59.449 33.333 0.00 0.00 38.06 1.40
2804 3124 6.751514 AACGATGTCCTGCATGTTATAAAA 57.248 33.333 0.00 0.00 38.06 1.52
2805 3125 6.751514 ACGATGTCCTGCATGTTATAAAAA 57.248 33.333 0.00 0.00 38.06 1.94
2827 3147 6.830114 AAAGAGCACTACTATTACGATTGC 57.170 37.500 0.00 0.00 0.00 3.56
2828 3148 5.515797 AGAGCACTACTATTACGATTGCA 57.484 39.130 0.00 0.00 0.00 4.08
2829 3149 6.090483 AGAGCACTACTATTACGATTGCAT 57.910 37.500 0.00 0.00 0.00 3.96
2830 3150 5.923114 AGAGCACTACTATTACGATTGCATG 59.077 40.000 0.00 0.00 0.00 4.06
2831 3151 5.601662 AGCACTACTATTACGATTGCATGT 58.398 37.500 0.00 0.00 0.00 3.21
2832 3152 6.745116 AGCACTACTATTACGATTGCATGTA 58.255 36.000 0.00 0.00 0.00 2.29
2833 3153 7.207383 AGCACTACTATTACGATTGCATGTAA 58.793 34.615 0.00 0.00 35.25 2.41
2834 3154 7.872993 AGCACTACTATTACGATTGCATGTAAT 59.127 33.333 8.93 8.93 42.33 1.89
2835 3155 8.162880 GCACTACTATTACGATTGCATGTAATC 58.837 37.037 22.41 22.41 40.64 1.75
2836 3156 9.191995 CACTACTATTACGATTGCATGTAATCA 57.808 33.333 28.63 14.96 40.64 2.57
2837 3157 9.411801 ACTACTATTACGATTGCATGTAATCAG 57.588 33.333 28.63 23.36 40.64 2.90
2838 3158 7.658179 ACTATTACGATTGCATGTAATCAGG 57.342 36.000 28.63 18.83 40.64 3.86
2846 3166 3.892918 GCATGTAATCAGGCTAGCAAG 57.107 47.619 18.24 8.24 46.09 4.01
2847 3167 2.031333 GCATGTAATCAGGCTAGCAAGC 60.031 50.000 18.24 0.00 46.09 4.01
2862 3182 6.849588 CTAGCAAGCAGAAACCAAAATTTT 57.150 33.333 0.00 0.00 0.00 1.82
2863 3183 5.488645 AGCAAGCAGAAACCAAAATTTTG 57.511 34.783 21.65 21.65 37.90 2.44
2864 3184 4.943093 AGCAAGCAGAAACCAAAATTTTGT 59.057 33.333 25.25 13.31 36.45 2.83
2865 3185 5.415389 AGCAAGCAGAAACCAAAATTTTGTT 59.585 32.000 25.25 16.04 36.45 2.83
2866 3186 6.072008 AGCAAGCAGAAACCAAAATTTTGTTT 60.072 30.769 25.25 22.89 36.45 2.83
2867 3187 6.251163 GCAAGCAGAAACCAAAATTTTGTTTC 59.749 34.615 28.56 28.56 37.83 2.78
2868 3188 7.529158 CAAGCAGAAACCAAAATTTTGTTTCT 58.471 30.769 30.46 30.46 42.36 2.52
2869 3189 7.686438 AGCAGAAACCAAAATTTTGTTTCTT 57.314 28.000 31.84 24.42 41.24 2.52
2870 3190 8.109705 AGCAGAAACCAAAATTTTGTTTCTTT 57.890 26.923 31.84 25.75 41.24 2.52
2871 3191 8.575589 AGCAGAAACCAAAATTTTGTTTCTTTT 58.424 25.926 31.84 25.56 41.24 2.27
2872 3192 9.190858 GCAGAAACCAAAATTTTGTTTCTTTTT 57.809 25.926 31.84 21.24 41.24 1.94
2895 3215 8.918202 TTTTTGACATGAAACTGATAGTACCT 57.082 30.769 0.00 0.00 0.00 3.08
2896 3216 7.905604 TTTGACATGAAACTGATAGTACCTG 57.094 36.000 0.00 0.00 0.00 4.00
2897 3217 6.605471 TGACATGAAACTGATAGTACCTGT 57.395 37.500 0.00 0.00 0.00 4.00
2898 3218 7.712204 TGACATGAAACTGATAGTACCTGTA 57.288 36.000 0.00 0.00 0.00 2.74
2899 3219 8.306313 TGACATGAAACTGATAGTACCTGTAT 57.694 34.615 0.00 0.00 0.00 2.29
2900 3220 8.758829 TGACATGAAACTGATAGTACCTGTATT 58.241 33.333 0.00 0.00 0.00 1.89
2901 3221 9.601217 GACATGAAACTGATAGTACCTGTATTT 57.399 33.333 0.00 0.00 0.00 1.40
2902 3222 9.959721 ACATGAAACTGATAGTACCTGTATTTT 57.040 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.942532 AGTTGCAAGTTATCTGAGTTTTGA 57.057 33.333 0.00 0.00 0.00 2.69
58 59 6.462207 CCAAGGTGAGACTGTTCCTATCATAG 60.462 46.154 0.00 0.00 0.00 2.23
238 240 4.520492 GCTATAGCCAACCAGCATATTGTT 59.480 41.667 14.13 0.00 34.13 2.83
374 378 5.766670 GCATGAATGTCCCTTCATTATCAGA 59.233 40.000 0.00 0.00 41.89 3.27
473 477 4.109050 GTTGCTTCGACTATTCTCTCCTG 58.891 47.826 0.00 0.00 0.00 3.86
539 544 1.485066 ACCTCCGTCTTGAAGTTGTGT 59.515 47.619 0.00 0.00 0.00 3.72
597 602 2.203153 AGTTGGTCGGTGTGGTGC 60.203 61.111 0.00 0.00 0.00 5.01
614 619 2.362397 GCGAGATCTTGATAGTGGTGGA 59.638 50.000 14.59 0.00 0.00 4.02
655 660 5.928839 CGATCTATATTGTTGCTTAGCCTGT 59.071 40.000 0.29 0.00 0.00 4.00
666 671 3.807622 CACAACGCCCGATCTATATTGTT 59.192 43.478 0.00 0.00 0.00 2.83
727 732 7.763613 AGGAAAATAATATCTCAGCATTCCCT 58.236 34.615 0.00 0.00 35.52 4.20
784 789 9.353999 GCTTTAAATTCACCGTATGATTTTTCT 57.646 29.630 10.31 0.00 40.04 2.52
785 790 8.311120 CGCTTTAAATTCACCGTATGATTTTTC 58.689 33.333 10.31 0.00 40.04 2.29
875 880 2.279517 CTCATAGGTCGGTGCGGC 60.280 66.667 0.00 0.00 0.00 6.53
893 898 0.384309 GGGCGGCTGGTATTTAAAGC 59.616 55.000 9.56 0.00 36.17 3.51
929 934 1.155155 GGGGAAAGTGCTGGGGAAA 59.845 57.895 0.00 0.00 0.00 3.13
1139 1148 2.733218 CGAAGTTGCGCCACTCGA 60.733 61.111 15.24 0.00 41.67 4.04
1491 1509 2.501128 GCGATGTAGAGGCAGGCA 59.499 61.111 0.00 0.00 0.00 4.75
1840 1858 2.742372 CTTGACGGCGGAGTTGGG 60.742 66.667 13.24 0.00 0.00 4.12
1975 2067 1.283736 AGAACACACACGTTCCGAAC 58.716 50.000 0.76 0.76 45.27 3.95
1979 2071 2.031683 CCAAGAAGAACACACACGTTCC 59.968 50.000 0.00 0.00 45.27 3.62
1980 2072 2.031683 CCCAAGAAGAACACACACGTTC 59.968 50.000 0.00 0.00 44.63 3.95
2017 2121 3.362295 CAACACAAACTTCACATGTCCG 58.638 45.455 0.00 0.00 0.00 4.79
2102 2308 4.872691 GGATTATGTCTCAGACCACAGTTG 59.127 45.833 1.24 0.00 0.00 3.16
2145 2450 5.663456 TGTTCATGAGATCGATCATTCACA 58.337 37.500 26.47 16.86 37.84 3.58
2146 2451 6.478016 TCTTGTTCATGAGATCGATCATTCAC 59.522 38.462 26.47 14.75 37.84 3.18
2168 2475 6.489022 ACAAAAGTTAGCGAAATTACCCTCTT 59.511 34.615 0.00 0.00 0.00 2.85
2169 2476 6.002082 ACAAAAGTTAGCGAAATTACCCTCT 58.998 36.000 0.00 0.00 0.00 3.69
2181 2488 2.599082 CGCCTAGAGACAAAAGTTAGCG 59.401 50.000 0.00 0.00 0.00 4.26
2185 2492 1.809684 GCCGCCTAGAGACAAAAGTT 58.190 50.000 0.00 0.00 0.00 2.66
2212 2520 2.808543 GAGTTTTGCCTAGCCCATATCG 59.191 50.000 0.00 0.00 0.00 2.92
2217 2525 2.373335 TTTGAGTTTTGCCTAGCCCA 57.627 45.000 0.00 0.00 0.00 5.36
2218 2526 3.092301 AGATTTGAGTTTTGCCTAGCCC 58.908 45.455 0.00 0.00 0.00 5.19
2219 2527 3.119352 CCAGATTTGAGTTTTGCCTAGCC 60.119 47.826 0.00 0.00 0.00 3.93
2220 2528 3.507622 ACCAGATTTGAGTTTTGCCTAGC 59.492 43.478 0.00 0.00 0.00 3.42
2231 2539 8.821147 TTCAATGAAATTCAACCAGATTTGAG 57.179 30.769 0.00 0.00 36.84 3.02
2238 2547 6.514947 TCCAGTTTCAATGAAATTCAACCAG 58.485 36.000 11.87 0.00 31.22 4.00
2251 2560 6.780457 CCATATTCTGGTTCCAGTTTCAAT 57.220 37.500 17.00 11.99 40.49 2.57
2269 2578 4.046286 TCAGTTTTGAACCAGGCCATAT 57.954 40.909 5.01 0.00 0.00 1.78
2271 2580 2.380064 TCAGTTTTGAACCAGGCCAT 57.620 45.000 5.01 0.00 0.00 4.40
2272 2581 2.151502 TTCAGTTTTGAACCAGGCCA 57.848 45.000 5.01 0.00 38.37 5.36
2273 2582 3.751479 ATTTCAGTTTTGAACCAGGCC 57.249 42.857 0.00 0.00 42.79 5.19
2274 2583 5.453567 ACTATTTCAGTTTTGAACCAGGC 57.546 39.130 0.00 0.00 42.79 4.85
2275 2584 7.745620 ACTACTATTTCAGTTTTGAACCAGG 57.254 36.000 0.00 0.00 42.79 4.45
2309 2629 8.581578 TCTGATTTAGTTTTTGGTCCAATTACC 58.418 33.333 4.80 0.00 40.19 2.85
2316 2636 6.183360 TGGGTTTCTGATTTAGTTTTTGGTCC 60.183 38.462 0.00 0.00 0.00 4.46
2320 2640 8.550376 CATTGTGGGTTTCTGATTTAGTTTTTG 58.450 33.333 0.00 0.00 0.00 2.44
2352 2672 8.107095 ACCATGCCAATTTTCTAACTCTAAGTA 58.893 33.333 0.00 0.00 0.00 2.24
2353 2673 6.948309 ACCATGCCAATTTTCTAACTCTAAGT 59.052 34.615 0.00 0.00 0.00 2.24
2355 2675 8.871629 TTACCATGCCAATTTTCTAACTCTAA 57.128 30.769 0.00 0.00 0.00 2.10
2357 2677 7.397192 ACATTACCATGCCAATTTTCTAACTCT 59.603 33.333 0.00 0.00 33.05 3.24
2408 2728 5.046878 ACATTGCCACATGAATTTGTCAGAT 60.047 36.000 0.00 0.00 40.43 2.90
2425 2745 3.487544 GGCGATTCTTTCAGTACATTGCC 60.488 47.826 0.00 0.00 37.27 4.52
2427 2747 4.259970 CGAGGCGATTCTTTCAGTACATTG 60.260 45.833 0.00 0.00 0.00 2.82
2430 2750 2.230508 ACGAGGCGATTCTTTCAGTACA 59.769 45.455 0.00 0.00 0.00 2.90
2431 2751 2.599082 CACGAGGCGATTCTTTCAGTAC 59.401 50.000 0.00 0.00 0.00 2.73
2432 2752 2.230508 ACACGAGGCGATTCTTTCAGTA 59.769 45.455 0.00 0.00 0.00 2.74
2433 2753 1.000955 ACACGAGGCGATTCTTTCAGT 59.999 47.619 0.00 0.00 0.00 3.41
2434 2754 1.714794 ACACGAGGCGATTCTTTCAG 58.285 50.000 0.00 0.00 0.00 3.02
2435 2755 2.163818 AACACGAGGCGATTCTTTCA 57.836 45.000 0.00 0.00 0.00 2.69
2450 2770 9.573133 CAGATTCCTTCAATTGGTTATTAACAC 57.427 33.333 5.42 0.00 0.00 3.32
2451 2771 9.527157 TCAGATTCCTTCAATTGGTTATTAACA 57.473 29.630 5.42 0.00 0.00 2.41
2452 2772 9.788960 GTCAGATTCCTTCAATTGGTTATTAAC 57.211 33.333 5.42 0.00 0.00 2.01
2453 2773 9.527157 TGTCAGATTCCTTCAATTGGTTATTAA 57.473 29.630 5.42 0.00 0.00 1.40
2454 2774 9.699410 ATGTCAGATTCCTTCAATTGGTTATTA 57.301 29.630 5.42 0.00 0.00 0.98
2455 2775 8.472413 CATGTCAGATTCCTTCAATTGGTTATT 58.528 33.333 5.42 0.00 0.00 1.40
2456 2776 7.069085 CCATGTCAGATTCCTTCAATTGGTTAT 59.931 37.037 5.42 0.00 0.00 1.89
2457 2777 6.377996 CCATGTCAGATTCCTTCAATTGGTTA 59.622 38.462 5.42 0.00 0.00 2.85
2458 2778 5.186409 CCATGTCAGATTCCTTCAATTGGTT 59.814 40.000 5.42 0.00 0.00 3.67
2459 2779 4.708421 CCATGTCAGATTCCTTCAATTGGT 59.292 41.667 5.42 0.00 0.00 3.67
2460 2780 4.951715 TCCATGTCAGATTCCTTCAATTGG 59.048 41.667 5.42 0.00 0.00 3.16
2461 2781 6.710597 ATCCATGTCAGATTCCTTCAATTG 57.289 37.500 0.00 0.00 0.00 2.32
2462 2782 6.406624 GCAATCCATGTCAGATTCCTTCAATT 60.407 38.462 0.00 0.00 31.56 2.32
2463 2783 5.068723 GCAATCCATGTCAGATTCCTTCAAT 59.931 40.000 0.00 0.00 31.56 2.57
2464 2784 4.400251 GCAATCCATGTCAGATTCCTTCAA 59.600 41.667 0.00 0.00 31.56 2.69
2465 2785 3.949754 GCAATCCATGTCAGATTCCTTCA 59.050 43.478 0.00 0.00 31.56 3.02
2466 2786 4.036498 CAGCAATCCATGTCAGATTCCTTC 59.964 45.833 0.00 0.00 31.56 3.46
2467 2787 3.952323 CAGCAATCCATGTCAGATTCCTT 59.048 43.478 0.00 0.00 31.56 3.36
2468 2788 3.201487 TCAGCAATCCATGTCAGATTCCT 59.799 43.478 0.00 0.00 31.56 3.36
2469 2789 3.548770 TCAGCAATCCATGTCAGATTCC 58.451 45.455 0.00 0.00 31.56 3.01
2470 2790 3.564644 CCTCAGCAATCCATGTCAGATTC 59.435 47.826 0.00 0.00 31.56 2.52
2471 2791 3.053842 ACCTCAGCAATCCATGTCAGATT 60.054 43.478 0.00 0.00 34.25 2.40
2472 2792 2.508716 ACCTCAGCAATCCATGTCAGAT 59.491 45.455 0.00 0.00 0.00 2.90
2473 2793 1.911357 ACCTCAGCAATCCATGTCAGA 59.089 47.619 0.00 0.00 0.00 3.27
2474 2794 2.014857 CACCTCAGCAATCCATGTCAG 58.985 52.381 0.00 0.00 0.00 3.51
2475 2795 1.629861 TCACCTCAGCAATCCATGTCA 59.370 47.619 0.00 0.00 0.00 3.58
2476 2796 2.408271 TCACCTCAGCAATCCATGTC 57.592 50.000 0.00 0.00 0.00 3.06
2477 2797 2.025605 ACATCACCTCAGCAATCCATGT 60.026 45.455 0.00 0.00 0.00 3.21
2478 2798 2.651455 ACATCACCTCAGCAATCCATG 58.349 47.619 0.00 0.00 0.00 3.66
2479 2799 3.377253 AACATCACCTCAGCAATCCAT 57.623 42.857 0.00 0.00 0.00 3.41
2480 2800 2.885135 AACATCACCTCAGCAATCCA 57.115 45.000 0.00 0.00 0.00 3.41
2481 2801 3.873952 GACTAACATCACCTCAGCAATCC 59.126 47.826 0.00 0.00 0.00 3.01
2482 2802 4.331168 GTGACTAACATCACCTCAGCAATC 59.669 45.833 0.00 0.00 42.74 2.67
2483 2803 4.256920 GTGACTAACATCACCTCAGCAAT 58.743 43.478 0.00 0.00 42.74 3.56
2484 2804 3.664107 GTGACTAACATCACCTCAGCAA 58.336 45.455 0.00 0.00 42.74 3.91
2485 2805 2.352715 CGTGACTAACATCACCTCAGCA 60.353 50.000 0.53 0.00 45.23 4.41
2486 2806 2.263077 CGTGACTAACATCACCTCAGC 58.737 52.381 0.53 0.00 45.23 4.26
2487 2807 2.263077 GCGTGACTAACATCACCTCAG 58.737 52.381 0.53 0.00 45.23 3.35
2488 2808 1.616374 TGCGTGACTAACATCACCTCA 59.384 47.619 0.53 0.00 45.23 3.86
2489 2809 2.363788 TGCGTGACTAACATCACCTC 57.636 50.000 0.53 0.00 45.23 3.85
2490 2810 2.028112 ACATGCGTGACTAACATCACCT 60.028 45.455 14.17 0.00 45.23 4.00
2491 2811 2.346803 ACATGCGTGACTAACATCACC 58.653 47.619 14.17 0.00 45.23 4.02
2492 2812 5.718649 ATAACATGCGTGACTAACATCAC 57.281 39.130 14.17 0.00 44.68 3.06
2493 2813 6.541969 CAAATAACATGCGTGACTAACATCA 58.458 36.000 14.17 0.00 0.00 3.07
2494 2814 5.452302 GCAAATAACATGCGTGACTAACATC 59.548 40.000 14.17 0.00 33.57 3.06
2495 2815 5.331902 GCAAATAACATGCGTGACTAACAT 58.668 37.500 14.17 0.00 33.57 2.71
2496 2816 4.378978 GGCAAATAACATGCGTGACTAACA 60.379 41.667 14.17 0.00 44.75 2.41
2497 2817 4.095610 GGCAAATAACATGCGTGACTAAC 58.904 43.478 14.17 0.00 44.75 2.34
2498 2818 3.753797 TGGCAAATAACATGCGTGACTAA 59.246 39.130 14.17 0.00 44.75 2.24
2499 2819 3.339141 TGGCAAATAACATGCGTGACTA 58.661 40.909 14.17 3.95 44.75 2.59
2500 2820 2.158559 TGGCAAATAACATGCGTGACT 58.841 42.857 14.17 1.53 44.75 3.41
2501 2821 2.095263 ACTGGCAAATAACATGCGTGAC 60.095 45.455 14.17 0.00 44.75 3.67
2502 2822 2.158559 ACTGGCAAATAACATGCGTGA 58.841 42.857 14.17 0.00 44.75 4.35
2503 2823 2.162208 AGACTGGCAAATAACATGCGTG 59.838 45.455 3.82 3.82 44.75 5.34
2504 2824 2.436417 AGACTGGCAAATAACATGCGT 58.564 42.857 0.00 0.00 44.75 5.24
2505 2825 4.818534 ATAGACTGGCAAATAACATGCG 57.181 40.909 0.00 0.00 44.75 4.73
2506 2826 7.874940 TCATTATAGACTGGCAAATAACATGC 58.125 34.615 0.00 0.00 43.08 4.06
2510 2830 9.683069 CCAATTCATTATAGACTGGCAAATAAC 57.317 33.333 0.00 0.00 0.00 1.89
2511 2831 9.639563 TCCAATTCATTATAGACTGGCAAATAA 57.360 29.630 0.00 0.00 0.00 1.40
2512 2832 9.066892 GTCCAATTCATTATAGACTGGCAAATA 57.933 33.333 0.00 0.00 0.00 1.40
2513 2833 7.560991 TGTCCAATTCATTATAGACTGGCAAAT 59.439 33.333 0.00 0.00 0.00 2.32
2514 2834 6.889177 TGTCCAATTCATTATAGACTGGCAAA 59.111 34.615 0.00 0.00 0.00 3.68
2515 2835 6.422333 TGTCCAATTCATTATAGACTGGCAA 58.578 36.000 0.00 0.00 0.00 4.52
2516 2836 6.000246 TGTCCAATTCATTATAGACTGGCA 58.000 37.500 0.00 0.00 0.00 4.92
2517 2837 7.229306 TGAATGTCCAATTCATTATAGACTGGC 59.771 37.037 0.00 0.00 35.94 4.85
2518 2838 8.681486 TGAATGTCCAATTCATTATAGACTGG 57.319 34.615 0.00 0.00 35.94 4.00
2519 2839 8.781196 CCTGAATGTCCAATTCATTATAGACTG 58.219 37.037 1.50 0.00 37.40 3.51
2520 2840 7.941238 CCCTGAATGTCCAATTCATTATAGACT 59.059 37.037 1.50 0.00 37.40 3.24
2521 2841 7.308830 GCCCTGAATGTCCAATTCATTATAGAC 60.309 40.741 1.50 0.00 37.40 2.59
2522 2842 6.716628 GCCCTGAATGTCCAATTCATTATAGA 59.283 38.462 1.50 0.00 37.40 1.98
2523 2843 6.348786 CGCCCTGAATGTCCAATTCATTATAG 60.349 42.308 1.50 0.00 37.40 1.31
2524 2844 5.473162 CGCCCTGAATGTCCAATTCATTATA 59.527 40.000 1.50 0.00 37.40 0.98
2525 2845 4.279169 CGCCCTGAATGTCCAATTCATTAT 59.721 41.667 1.50 0.00 37.40 1.28
2526 2846 3.631686 CGCCCTGAATGTCCAATTCATTA 59.368 43.478 1.50 0.00 37.40 1.90
2527 2847 2.428171 CGCCCTGAATGTCCAATTCATT 59.572 45.455 1.50 0.00 37.40 2.57
2528 2848 2.026641 CGCCCTGAATGTCCAATTCAT 58.973 47.619 1.50 0.00 37.40 2.57
2529 2849 1.462616 CGCCCTGAATGTCCAATTCA 58.537 50.000 1.20 1.20 36.67 2.57
2530 2850 0.740737 CCGCCCTGAATGTCCAATTC 59.259 55.000 0.00 0.00 0.00 2.17
2531 2851 0.684153 CCCGCCCTGAATGTCCAATT 60.684 55.000 0.00 0.00 0.00 2.32
2532 2852 1.076777 CCCGCCCTGAATGTCCAAT 60.077 57.895 0.00 0.00 0.00 3.16
2533 2853 2.354729 CCCGCCCTGAATGTCCAA 59.645 61.111 0.00 0.00 0.00 3.53
2534 2854 3.727258 CCCCGCCCTGAATGTCCA 61.727 66.667 0.00 0.00 0.00 4.02
2535 2855 2.493273 TTTCCCCGCCCTGAATGTCC 62.493 60.000 0.00 0.00 0.00 4.02
2536 2856 0.395724 ATTTCCCCGCCCTGAATGTC 60.396 55.000 0.00 0.00 0.00 3.06
2537 2857 0.395724 GATTTCCCCGCCCTGAATGT 60.396 55.000 0.00 0.00 0.00 2.71
2538 2858 0.395586 TGATTTCCCCGCCCTGAATG 60.396 55.000 0.00 0.00 0.00 2.67
2539 2859 0.557729 ATGATTTCCCCGCCCTGAAT 59.442 50.000 0.00 0.00 0.00 2.57
2540 2860 0.334676 AATGATTTCCCCGCCCTGAA 59.665 50.000 0.00 0.00 0.00 3.02
2541 2861 1.133915 GTAATGATTTCCCCGCCCTGA 60.134 52.381 0.00 0.00 0.00 3.86
2542 2862 1.318576 GTAATGATTTCCCCGCCCTG 58.681 55.000 0.00 0.00 0.00 4.45
2543 2863 0.923358 TGTAATGATTTCCCCGCCCT 59.077 50.000 0.00 0.00 0.00 5.19
2544 2864 1.886542 GATGTAATGATTTCCCCGCCC 59.113 52.381 0.00 0.00 0.00 6.13
2545 2865 2.863809 AGATGTAATGATTTCCCCGCC 58.136 47.619 0.00 0.00 0.00 6.13
2546 2866 3.882888 TGAAGATGTAATGATTTCCCCGC 59.117 43.478 0.00 0.00 0.00 6.13
2547 2867 5.532406 ACATGAAGATGTAATGATTTCCCCG 59.468 40.000 0.00 0.00 41.27 5.73
2548 2868 6.966534 ACATGAAGATGTAATGATTTCCCC 57.033 37.500 0.00 0.00 41.27 4.81
2549 2869 7.999679 TCAACATGAAGATGTAATGATTTCCC 58.000 34.615 0.00 0.00 42.30 3.97
2554 2874 8.790718 GCCTATTCAACATGAAGATGTAATGAT 58.209 33.333 0.00 0.00 42.30 2.45
2555 2875 7.041848 CGCCTATTCAACATGAAGATGTAATGA 60.042 37.037 0.00 0.00 42.30 2.57
2556 2876 7.073883 CGCCTATTCAACATGAAGATGTAATG 58.926 38.462 0.00 0.00 42.30 1.90
2557 2877 6.293626 GCGCCTATTCAACATGAAGATGTAAT 60.294 38.462 0.00 0.00 42.30 1.89
2558 2878 5.007626 GCGCCTATTCAACATGAAGATGTAA 59.992 40.000 0.00 0.00 42.30 2.41
2559 2879 4.511454 GCGCCTATTCAACATGAAGATGTA 59.489 41.667 0.00 0.00 42.30 2.29
2560 2880 3.313526 GCGCCTATTCAACATGAAGATGT 59.686 43.478 0.00 0.00 45.24 3.06
2561 2881 3.313249 TGCGCCTATTCAACATGAAGATG 59.687 43.478 4.18 0.00 40.05 2.90
2562 2882 3.544684 TGCGCCTATTCAACATGAAGAT 58.455 40.909 4.18 0.00 40.05 2.40
2563 2883 2.984562 TGCGCCTATTCAACATGAAGA 58.015 42.857 4.18 0.00 40.05 2.87
2564 2884 3.976793 ATGCGCCTATTCAACATGAAG 57.023 42.857 4.18 0.00 40.05 3.02
2565 2885 5.588246 TCTTTATGCGCCTATTCAACATGAA 59.412 36.000 4.18 0.00 41.09 2.57
2566 2886 5.122519 TCTTTATGCGCCTATTCAACATGA 58.877 37.500 4.18 0.00 0.00 3.07
2567 2887 5.008019 ACTCTTTATGCGCCTATTCAACATG 59.992 40.000 4.18 0.00 0.00 3.21
2568 2888 5.126067 ACTCTTTATGCGCCTATTCAACAT 58.874 37.500 4.18 0.00 0.00 2.71
2569 2889 4.513442 ACTCTTTATGCGCCTATTCAACA 58.487 39.130 4.18 0.00 0.00 3.33
2570 2890 5.266242 CAACTCTTTATGCGCCTATTCAAC 58.734 41.667 4.18 0.00 0.00 3.18
2571 2891 4.201910 GCAACTCTTTATGCGCCTATTCAA 60.202 41.667 4.18 0.00 32.17 2.69
2572 2892 3.312421 GCAACTCTTTATGCGCCTATTCA 59.688 43.478 4.18 0.00 32.17 2.57
2573 2893 3.312421 TGCAACTCTTTATGCGCCTATTC 59.688 43.478 4.18 0.00 45.47 1.75
2574 2894 3.278574 TGCAACTCTTTATGCGCCTATT 58.721 40.909 4.18 0.00 45.47 1.73
2575 2895 2.874701 CTGCAACTCTTTATGCGCCTAT 59.125 45.455 4.18 0.00 45.47 2.57
2576 2896 2.093711 TCTGCAACTCTTTATGCGCCTA 60.094 45.455 4.18 0.00 45.47 3.93
2577 2897 1.089920 CTGCAACTCTTTATGCGCCT 58.910 50.000 4.18 0.00 45.47 5.52
2578 2898 1.086696 TCTGCAACTCTTTATGCGCC 58.913 50.000 4.18 0.00 45.47 6.53
2579 2899 3.181507 TGAATCTGCAACTCTTTATGCGC 60.182 43.478 0.00 0.00 45.47 6.09
2580 2900 4.093998 AGTGAATCTGCAACTCTTTATGCG 59.906 41.667 0.00 0.00 45.47 4.73
2581 2901 5.557891 AGTGAATCTGCAACTCTTTATGC 57.442 39.130 0.00 0.00 42.86 3.14
2582 2902 7.413438 GGTGTAGTGAATCTGCAACTCTTTATG 60.413 40.741 0.00 0.00 41.99 1.90
2583 2903 6.595716 GGTGTAGTGAATCTGCAACTCTTTAT 59.404 38.462 0.00 0.00 41.99 1.40
2584 2904 5.932303 GGTGTAGTGAATCTGCAACTCTTTA 59.068 40.000 0.00 0.00 41.99 1.85
2585 2905 4.757149 GGTGTAGTGAATCTGCAACTCTTT 59.243 41.667 0.00 0.00 41.99 2.52
2586 2906 4.202357 TGGTGTAGTGAATCTGCAACTCTT 60.202 41.667 3.14 0.00 44.77 2.85
2587 2907 3.324846 TGGTGTAGTGAATCTGCAACTCT 59.675 43.478 3.14 0.00 44.77 3.24
2588 2908 3.664107 TGGTGTAGTGAATCTGCAACTC 58.336 45.455 3.14 0.00 44.77 3.01
2589 2909 3.769739 TGGTGTAGTGAATCTGCAACT 57.230 42.857 3.14 0.00 44.77 3.16
2590 2910 4.036262 TGTTTGGTGTAGTGAATCTGCAAC 59.964 41.667 0.00 0.00 44.75 4.17
2591 2911 4.203226 TGTTTGGTGTAGTGAATCTGCAA 58.797 39.130 0.00 0.00 40.20 4.08
2592 2912 3.814625 TGTTTGGTGTAGTGAATCTGCA 58.185 40.909 0.00 0.00 36.48 4.41
2593 2913 4.829064 TTGTTTGGTGTAGTGAATCTGC 57.171 40.909 0.00 0.00 0.00 4.26
2594 2914 6.377327 ACTTTGTTTGGTGTAGTGAATCTG 57.623 37.500 0.00 0.00 0.00 2.90
2595 2915 7.280356 AGTACTTTGTTTGGTGTAGTGAATCT 58.720 34.615 0.00 0.00 0.00 2.40
2596 2916 7.492352 AGTACTTTGTTTGGTGTAGTGAATC 57.508 36.000 0.00 0.00 0.00 2.52
2597 2917 7.875327 AAGTACTTTGTTTGGTGTAGTGAAT 57.125 32.000 1.12 0.00 0.00 2.57
2598 2918 8.967664 ATAAGTACTTTGTTTGGTGTAGTGAA 57.032 30.769 14.49 0.00 0.00 3.18
2601 2921 9.835389 TGTTATAAGTACTTTGTTTGGTGTAGT 57.165 29.630 14.49 0.00 0.00 2.73
2638 2958 1.226030 CGCCCGTCCGGATAAAATCC 61.226 60.000 7.81 0.00 46.22 3.01
2639 2959 0.249573 TCGCCCGTCCGGATAAAATC 60.250 55.000 7.81 0.00 37.50 2.17
2640 2960 0.531311 GTCGCCCGTCCGGATAAAAT 60.531 55.000 7.81 0.00 37.50 1.82
2641 2961 1.153588 GTCGCCCGTCCGGATAAAA 60.154 57.895 7.81 0.00 37.50 1.52
2642 2962 2.287457 CTGTCGCCCGTCCGGATAAA 62.287 60.000 7.81 0.00 37.50 1.40
2643 2963 2.755064 TGTCGCCCGTCCGGATAA 60.755 61.111 7.81 0.00 37.50 1.75
2644 2964 2.971095 ATCTGTCGCCCGTCCGGATA 62.971 60.000 7.81 0.00 37.50 2.59
2647 2967 4.873129 CATCTGTCGCCCGTCCGG 62.873 72.222 0.00 0.00 0.00 5.14
2648 2968 4.129737 ACATCTGTCGCCCGTCCG 62.130 66.667 0.00 0.00 0.00 4.79
2649 2969 2.202756 GACATCTGTCGCCCGTCC 60.203 66.667 0.00 0.00 35.12 4.79
2650 2970 2.202756 GGACATCTGTCGCCCGTC 60.203 66.667 4.36 0.00 45.65 4.79
2651 2971 1.827399 AAAGGACATCTGTCGCCCGT 61.827 55.000 4.36 0.00 45.65 5.28
2652 2972 0.673644 AAAAGGACATCTGTCGCCCG 60.674 55.000 4.36 0.00 45.65 6.13
2653 2973 1.534729 AAAAAGGACATCTGTCGCCC 58.465 50.000 4.36 0.00 45.65 6.13
2654 2974 3.751698 AGTTAAAAAGGACATCTGTCGCC 59.248 43.478 4.36 0.00 45.65 5.54
2655 2975 6.476243 TTAGTTAAAAAGGACATCTGTCGC 57.524 37.500 4.36 0.00 45.65 5.19
2674 2994 9.993454 GACGGAGGGAGTATTTAATAAATTAGT 57.007 33.333 3.36 0.00 32.38 2.24
2675 2995 9.433153 GGACGGAGGGAGTATTTAATAAATTAG 57.567 37.037 3.36 0.00 32.38 1.73
2676 2996 8.377799 GGGACGGAGGGAGTATTTAATAAATTA 58.622 37.037 3.36 0.00 32.38 1.40
2677 2997 7.147266 TGGGACGGAGGGAGTATTTAATAAATT 60.147 37.037 3.36 0.00 32.38 1.82
2678 2998 6.330778 TGGGACGGAGGGAGTATTTAATAAAT 59.669 38.462 3.56 3.56 34.90 1.40
2679 2999 5.666718 TGGGACGGAGGGAGTATTTAATAAA 59.333 40.000 0.00 0.00 0.00 1.40
2680 3000 5.218179 TGGGACGGAGGGAGTATTTAATAA 58.782 41.667 0.00 0.00 0.00 1.40
2681 3001 4.818447 TGGGACGGAGGGAGTATTTAATA 58.182 43.478 0.00 0.00 0.00 0.98
2682 3002 3.660959 TGGGACGGAGGGAGTATTTAAT 58.339 45.455 0.00 0.00 0.00 1.40
2683 3003 3.119009 TGGGACGGAGGGAGTATTTAA 57.881 47.619 0.00 0.00 0.00 1.52
2684 3004 2.852714 TGGGACGGAGGGAGTATTTA 57.147 50.000 0.00 0.00 0.00 1.40
2685 3005 2.191981 ATGGGACGGAGGGAGTATTT 57.808 50.000 0.00 0.00 0.00 1.40
2686 3006 3.339713 TTATGGGACGGAGGGAGTATT 57.660 47.619 0.00 0.00 0.00 1.89
2687 3007 3.173965 CATTATGGGACGGAGGGAGTAT 58.826 50.000 0.00 0.00 0.00 2.12
2688 3008 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2689 3009 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2690 3010 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2691 3011 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
2692 3012 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2693 3013 3.386726 TGTCTTACATTATGGGACGGAGG 59.613 47.826 0.00 0.00 0.00 4.30
2694 3014 4.665833 TGTCTTACATTATGGGACGGAG 57.334 45.455 0.00 0.00 0.00 4.63
2695 3015 5.623956 AATGTCTTACATTATGGGACGGA 57.376 39.130 3.51 0.00 46.11 4.69
2732 3052 8.664669 AAGTCCCCATAATGTAAGATGTTTTT 57.335 30.769 0.00 0.00 0.00 1.94
2733 3053 8.531146 CAAAGTCCCCATAATGTAAGATGTTTT 58.469 33.333 0.00 0.00 0.00 2.43
2734 3054 7.673926 ACAAAGTCCCCATAATGTAAGATGTTT 59.326 33.333 0.00 0.00 0.00 2.83
2735 3055 7.182060 ACAAAGTCCCCATAATGTAAGATGTT 58.818 34.615 0.00 0.00 0.00 2.71
2736 3056 6.731467 ACAAAGTCCCCATAATGTAAGATGT 58.269 36.000 0.00 0.00 0.00 3.06
2737 3057 6.017934 CGACAAAGTCCCCATAATGTAAGATG 60.018 42.308 0.00 0.00 0.00 2.90
2738 3058 6.055588 CGACAAAGTCCCCATAATGTAAGAT 58.944 40.000 0.00 0.00 0.00 2.40
2739 3059 5.424757 CGACAAAGTCCCCATAATGTAAGA 58.575 41.667 0.00 0.00 0.00 2.10
2740 3060 4.035208 GCGACAAAGTCCCCATAATGTAAG 59.965 45.833 0.00 0.00 0.00 2.34
2741 3061 3.942748 GCGACAAAGTCCCCATAATGTAA 59.057 43.478 0.00 0.00 0.00 2.41
2742 3062 3.199071 AGCGACAAAGTCCCCATAATGTA 59.801 43.478 0.00 0.00 0.00 2.29
2743 3063 2.026262 AGCGACAAAGTCCCCATAATGT 60.026 45.455 0.00 0.00 0.00 2.71
2744 3064 2.355756 CAGCGACAAAGTCCCCATAATG 59.644 50.000 0.00 0.00 0.00 1.90
2745 3065 2.643551 CAGCGACAAAGTCCCCATAAT 58.356 47.619 0.00 0.00 0.00 1.28
2746 3066 1.948611 GCAGCGACAAAGTCCCCATAA 60.949 52.381 0.00 0.00 0.00 1.90
2747 3067 0.392461 GCAGCGACAAAGTCCCCATA 60.392 55.000 0.00 0.00 0.00 2.74
2748 3068 1.675641 GCAGCGACAAAGTCCCCAT 60.676 57.895 0.00 0.00 0.00 4.00
2749 3069 2.281484 GCAGCGACAAAGTCCCCA 60.281 61.111 0.00 0.00 0.00 4.96
2750 3070 1.600916 AAGCAGCGACAAAGTCCCC 60.601 57.895 0.00 0.00 0.00 4.81
2751 3071 1.576421 CAAGCAGCGACAAAGTCCC 59.424 57.895 0.00 0.00 0.00 4.46
2752 3072 1.081840 GCAAGCAGCGACAAAGTCC 60.082 57.895 0.00 0.00 0.00 3.85
2753 3073 4.522460 GCAAGCAGCGACAAAGTC 57.478 55.556 0.00 0.00 0.00 3.01
2762 3082 0.726827 TAAGTACGCATGCAAGCAGC 59.273 50.000 19.57 4.29 45.96 5.25
2763 3083 2.774007 GTTAAGTACGCATGCAAGCAG 58.226 47.619 19.57 9.25 0.00 4.24
2764 3084 1.127766 CGTTAAGTACGCATGCAAGCA 59.872 47.619 19.57 0.00 44.26 3.91
2765 3085 1.797964 CGTTAAGTACGCATGCAAGC 58.202 50.000 19.57 3.25 44.26 4.01
2775 3095 4.181578 ACATGCAGGACATCGTTAAGTAC 58.818 43.478 4.84 0.00 36.64 2.73
2776 3096 4.465632 ACATGCAGGACATCGTTAAGTA 57.534 40.909 4.84 0.00 36.64 2.24
2777 3097 3.334583 ACATGCAGGACATCGTTAAGT 57.665 42.857 4.84 0.00 36.64 2.24
2778 3098 5.991328 ATAACATGCAGGACATCGTTAAG 57.009 39.130 4.84 0.00 36.64 1.85
2779 3099 7.851387 TTTATAACATGCAGGACATCGTTAA 57.149 32.000 4.84 0.00 36.64 2.01
2780 3100 7.851387 TTTTATAACATGCAGGACATCGTTA 57.149 32.000 4.84 0.00 36.64 3.18
2781 3101 6.751514 TTTTATAACATGCAGGACATCGTT 57.248 33.333 4.84 0.00 36.64 3.85
2782 3102 6.751514 TTTTTATAACATGCAGGACATCGT 57.248 33.333 4.84 0.00 36.64 3.73
2802 3122 7.333423 TGCAATCGTAATAGTAGTGCTCTTTTT 59.667 33.333 0.00 0.00 0.00 1.94
2803 3123 6.816640 TGCAATCGTAATAGTAGTGCTCTTTT 59.183 34.615 0.00 0.00 0.00 2.27
2804 3124 6.338146 TGCAATCGTAATAGTAGTGCTCTTT 58.662 36.000 0.00 0.00 0.00 2.52
2805 3125 5.902681 TGCAATCGTAATAGTAGTGCTCTT 58.097 37.500 0.00 0.00 0.00 2.85
2806 3126 5.515797 TGCAATCGTAATAGTAGTGCTCT 57.484 39.130 0.00 0.00 0.00 4.09
2807 3127 5.692204 ACATGCAATCGTAATAGTAGTGCTC 59.308 40.000 0.00 0.00 0.00 4.26
2808 3128 5.601662 ACATGCAATCGTAATAGTAGTGCT 58.398 37.500 0.00 0.00 0.00 4.40
2809 3129 5.907197 ACATGCAATCGTAATAGTAGTGC 57.093 39.130 0.00 0.00 0.00 4.40
2810 3130 9.191995 TGATTACATGCAATCGTAATAGTAGTG 57.808 33.333 12.88 0.00 38.19 2.74
2811 3131 9.411801 CTGATTACATGCAATCGTAATAGTAGT 57.588 33.333 12.88 0.00 38.19 2.73
2812 3132 8.864024 CCTGATTACATGCAATCGTAATAGTAG 58.136 37.037 12.88 13.75 38.19 2.57
2813 3133 7.330946 GCCTGATTACATGCAATCGTAATAGTA 59.669 37.037 12.88 7.92 38.19 1.82
2814 3134 6.147821 GCCTGATTACATGCAATCGTAATAGT 59.852 38.462 12.88 0.87 38.19 2.12
2815 3135 6.369890 AGCCTGATTACATGCAATCGTAATAG 59.630 38.462 12.88 5.39 38.19 1.73
2816 3136 6.230472 AGCCTGATTACATGCAATCGTAATA 58.770 36.000 12.88 0.00 38.19 0.98
2817 3137 5.065914 AGCCTGATTACATGCAATCGTAAT 58.934 37.500 15.46 15.46 40.21 1.89
2818 3138 4.450976 AGCCTGATTACATGCAATCGTAA 58.549 39.130 12.88 8.60 39.48 3.18
2819 3139 4.071961 AGCCTGATTACATGCAATCGTA 57.928 40.909 12.88 0.00 39.48 3.43
2820 3140 2.923121 AGCCTGATTACATGCAATCGT 58.077 42.857 12.88 0.00 39.48 3.73
2821 3141 3.120408 GCTAGCCTGATTACATGCAATCG 60.120 47.826 12.88 8.29 39.48 3.34
2822 3142 3.817084 TGCTAGCCTGATTACATGCAATC 59.183 43.478 13.29 11.17 39.48 2.67
2823 3143 3.824133 TGCTAGCCTGATTACATGCAAT 58.176 40.909 13.29 0.00 39.48 3.56
2824 3144 3.280197 TGCTAGCCTGATTACATGCAA 57.720 42.857 13.29 0.00 39.48 4.08
2825 3145 3.208594 CTTGCTAGCCTGATTACATGCA 58.791 45.455 13.29 0.00 39.48 3.96
2826 3146 2.031333 GCTTGCTAGCCTGATTACATGC 60.031 50.000 13.29 0.93 41.74 4.06
2827 3147 3.892918 GCTTGCTAGCCTGATTACATG 57.107 47.619 13.29 0.00 41.74 3.21
2837 3157 9.571241 CAAAATTTTGGTTTCTGCTTGCTAGCC 62.571 40.741 21.00 1.33 39.29 3.93
2838 3158 6.782097 CAAAATTTTGGTTTCTGCTTGCTAGC 60.782 38.462 21.00 13.56 39.88 3.42
2839 3159 6.258507 ACAAAATTTTGGTTTCTGCTTGCTAG 59.741 34.615 29.37 4.09 42.34 3.42
2840 3160 6.112058 ACAAAATTTTGGTTTCTGCTTGCTA 58.888 32.000 29.37 0.00 42.34 3.49
2841 3161 4.943093 ACAAAATTTTGGTTTCTGCTTGCT 59.057 33.333 29.37 6.04 42.34 3.91
2842 3162 5.233957 ACAAAATTTTGGTTTCTGCTTGC 57.766 34.783 29.37 0.00 42.34 4.01
2870 3190 8.783093 CAGGTACTATCAGTTTCATGTCAAAAA 58.217 33.333 0.00 0.00 36.02 1.94
2871 3191 7.936847 ACAGGTACTATCAGTTTCATGTCAAAA 59.063 33.333 0.00 0.00 36.02 2.44
2872 3192 7.450074 ACAGGTACTATCAGTTTCATGTCAAA 58.550 34.615 0.00 0.00 36.02 2.69
2873 3193 7.004555 ACAGGTACTATCAGTTTCATGTCAA 57.995 36.000 0.00 0.00 36.02 3.18
2874 3194 6.605471 ACAGGTACTATCAGTTTCATGTCA 57.395 37.500 0.00 0.00 36.02 3.58
2875 3195 9.601217 AAATACAGGTACTATCAGTTTCATGTC 57.399 33.333 0.00 0.00 36.02 3.06
2876 3196 9.959721 AAAATACAGGTACTATCAGTTTCATGT 57.040 29.630 0.00 6.68 36.02 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.