Multiple sequence alignment - TraesCS1D01G374100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G374100 chr1D 100.000 2600 0 0 1 2600 451628861 451631460 0.000000e+00 4802.0
1 TraesCS1D01G374100 chr1D 84.791 263 22 11 2134 2386 451630640 451630894 5.560000e-62 248.0
2 TraesCS1D01G374100 chr1D 84.791 263 22 11 1780 2034 451630994 451631246 5.560000e-62 248.0
3 TraesCS1D01G374100 chr1B 89.197 1842 117 34 304 2123 621267971 621266190 0.000000e+00 2224.0
4 TraesCS1D01G374100 chr1B 86.865 571 64 5 1275 1837 14936281 14936848 1.700000e-176 628.0
5 TraesCS1D01G374100 chr1B 86.076 474 35 10 2134 2588 621266514 621266053 5.030000e-132 481.0
6 TraesCS1D01G374100 chr1B 89.820 167 17 0 103 269 621268471 621268305 5.640000e-52 215.0
7 TraesCS1D01G374100 chr1B 89.697 165 15 2 99 262 621268142 621267979 2.620000e-50 209.0
8 TraesCS1D01G374100 chr1B 90.132 152 14 1 3 153 621268383 621268232 2.040000e-46 196.0
9 TraesCS1D01G374100 chr1B 92.857 56 4 0 2134 2189 14936790 14936845 5.960000e-12 82.4
10 TraesCS1D01G374100 chr5B 84.063 891 85 30 1275 2123 142001406 142002281 0.000000e+00 806.0
11 TraesCS1D01G374100 chr5B 92.857 56 4 0 2134 2189 142001914 142001969 5.960000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G374100 chr1D 451628861 451631460 2599 False 1766.0 4802 89.860667 1 2600 3 chr1D.!!$F1 2599
1 TraesCS1D01G374100 chr1B 621266053 621268471 2418 True 665.0 2224 88.984400 3 2588 5 chr1B.!!$R1 2585
2 TraesCS1D01G374100 chr1B 14936281 14936848 567 False 355.2 628 89.861000 1275 2189 2 chr1B.!!$F1 914
3 TraesCS1D01G374100 chr5B 142001406 142002281 875 False 444.2 806 88.460000 1275 2189 2 chr5B.!!$F1 914

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 196 0.032403 TGGGACTCGTGTTGTAACCG 59.968 55.0 0.0 0.0 0.0 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2284 0.317854 GCCGGTTTTTCACACTCAGC 60.318 55.0 1.9 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 112 4.499696 GCCTAAATTAGCATGCCGACAAAT 60.500 41.667 15.66 4.13 0.00 2.32
28 115 2.418368 TTAGCATGCCGACAAATCCT 57.582 45.000 15.66 0.00 0.00 3.24
56 143 4.098044 TGCTCCTTACTCACTTCCTATTCG 59.902 45.833 0.00 0.00 0.00 3.34
58 145 5.163540 GCTCCTTACTCACTTCCTATTCGAA 60.164 44.000 0.00 0.00 0.00 3.71
91 178 2.050350 CACAGGAGGCCAGCCAATG 61.050 63.158 16.09 8.67 38.92 2.82
101 188 1.003355 CAGCCAATGGGACTCGTGT 60.003 57.895 0.00 0.00 35.59 4.49
109 196 0.032403 TGGGACTCGTGTTGTAACCG 59.968 55.000 0.00 0.00 0.00 4.44
117 204 5.049167 ACTCGTGTTGTAACCGTCAATTTA 58.951 37.500 0.00 0.00 0.00 1.40
151 383 4.216257 ACTCGCTTGACAAAAATACATGCT 59.784 37.500 0.00 0.00 34.24 3.79
152 384 4.475028 TCGCTTGACAAAAATACATGCTG 58.525 39.130 0.00 0.00 34.24 4.41
153 385 4.215185 TCGCTTGACAAAAATACATGCTGA 59.785 37.500 0.00 0.00 34.24 4.26
154 386 4.321745 CGCTTGACAAAAATACATGCTGAC 59.678 41.667 0.00 0.00 34.24 3.51
177 409 2.244769 AGCAAACAAGTATGGCCCCTAT 59.755 45.455 0.00 0.00 0.00 2.57
178 410 2.362077 GCAAACAAGTATGGCCCCTATG 59.638 50.000 0.00 0.00 0.00 2.23
193 425 1.401148 CCTATGGATAACTCGACGCCG 60.401 57.143 0.00 0.00 37.07 6.46
198 430 2.199236 GGATAACTCGACGCCGAAATT 58.801 47.619 0.00 0.00 45.04 1.82
233 465 1.536073 CCTTGTCGGCTCCTCACTCA 61.536 60.000 0.00 0.00 0.00 3.41
262 494 3.052455 TCGGAGTAGCAAGCAAAATCA 57.948 42.857 0.00 0.00 0.00 2.57
264 496 2.483877 CGGAGTAGCAAGCAAAATCACA 59.516 45.455 0.00 0.00 0.00 3.58
265 497 3.425359 CGGAGTAGCAAGCAAAATCACAG 60.425 47.826 0.00 0.00 0.00 3.66
267 499 3.753272 GAGTAGCAAGCAAAATCACAGGA 59.247 43.478 0.00 0.00 0.00 3.86
268 500 3.755378 AGTAGCAAGCAAAATCACAGGAG 59.245 43.478 0.00 0.00 0.00 3.69
269 501 1.271656 AGCAAGCAAAATCACAGGAGC 59.728 47.619 0.00 0.00 0.00 4.70
270 502 1.271656 GCAAGCAAAATCACAGGAGCT 59.728 47.619 0.00 0.00 0.00 4.09
271 503 2.670509 GCAAGCAAAATCACAGGAGCTC 60.671 50.000 4.71 4.71 0.00 4.09
272 504 2.555325 CAAGCAAAATCACAGGAGCTCA 59.445 45.455 17.19 0.00 0.00 4.26
273 505 2.434428 AGCAAAATCACAGGAGCTCAG 58.566 47.619 17.19 10.01 0.00 3.35
274 506 2.039480 AGCAAAATCACAGGAGCTCAGA 59.961 45.455 17.19 7.92 0.00 3.27
275 507 3.015327 GCAAAATCACAGGAGCTCAGAT 58.985 45.455 17.19 9.92 0.00 2.90
276 508 4.080695 AGCAAAATCACAGGAGCTCAGATA 60.081 41.667 17.19 1.91 0.00 1.98
277 509 4.820716 GCAAAATCACAGGAGCTCAGATAT 59.179 41.667 17.19 4.11 0.00 1.63
278 510 5.994054 GCAAAATCACAGGAGCTCAGATATA 59.006 40.000 17.19 0.00 0.00 0.86
279 511 6.654161 GCAAAATCACAGGAGCTCAGATATAT 59.346 38.462 17.19 0.00 0.00 0.86
280 512 7.148440 GCAAAATCACAGGAGCTCAGATATATC 60.148 40.741 17.19 4.42 0.00 1.63
281 513 6.543430 AATCACAGGAGCTCAGATATATCC 57.457 41.667 17.19 0.00 0.00 2.59
282 514 5.003096 TCACAGGAGCTCAGATATATCCA 57.997 43.478 17.19 0.00 32.21 3.41
283 515 4.769488 TCACAGGAGCTCAGATATATCCAC 59.231 45.833 17.19 0.00 32.21 4.02
284 516 4.081752 CACAGGAGCTCAGATATATCCACC 60.082 50.000 17.19 2.63 32.21 4.61
285 517 3.130164 CAGGAGCTCAGATATATCCACCG 59.870 52.174 17.19 0.00 32.21 4.94
286 518 3.093057 GGAGCTCAGATATATCCACCGT 58.907 50.000 17.19 0.00 0.00 4.83
287 519 3.511934 GGAGCTCAGATATATCCACCGTT 59.488 47.826 17.19 0.00 0.00 4.44
288 520 4.381079 GGAGCTCAGATATATCCACCGTTC 60.381 50.000 17.19 3.81 0.00 3.95
289 521 4.411927 AGCTCAGATATATCCACCGTTCT 58.588 43.478 9.18 0.00 0.00 3.01
290 522 4.219507 AGCTCAGATATATCCACCGTTCTG 59.780 45.833 9.18 0.00 33.55 3.02
291 523 4.489810 CTCAGATATATCCACCGTTCTGC 58.510 47.826 9.18 0.00 32.57 4.26
292 524 3.258372 TCAGATATATCCACCGTTCTGCC 59.742 47.826 9.18 0.00 32.57 4.85
293 525 3.259374 CAGATATATCCACCGTTCTGCCT 59.741 47.826 9.18 0.00 0.00 4.75
294 526 4.462834 CAGATATATCCACCGTTCTGCCTA 59.537 45.833 9.18 0.00 0.00 3.93
295 527 5.127845 CAGATATATCCACCGTTCTGCCTAT 59.872 44.000 9.18 0.00 0.00 2.57
296 528 6.321435 CAGATATATCCACCGTTCTGCCTATA 59.679 42.308 9.18 0.00 0.00 1.31
297 529 4.803098 ATATCCACCGTTCTGCCTATAC 57.197 45.455 0.00 0.00 0.00 1.47
298 530 1.117150 TCCACCGTTCTGCCTATACC 58.883 55.000 0.00 0.00 0.00 2.73
299 531 0.249322 CCACCGTTCTGCCTATACCG 60.249 60.000 0.00 0.00 0.00 4.02
300 532 0.874607 CACCGTTCTGCCTATACCGC 60.875 60.000 0.00 0.00 0.00 5.68
301 533 1.660575 CCGTTCTGCCTATACCGCG 60.661 63.158 0.00 0.00 0.00 6.46
302 534 1.357690 CGTTCTGCCTATACCGCGA 59.642 57.895 8.23 0.00 0.00 5.87
328 560 1.135527 TGCCATACGTACTACACAGGC 59.864 52.381 0.00 4.01 41.15 4.85
343 575 3.081409 GGCTTCCTCGGCCTACCA 61.081 66.667 0.00 0.00 45.57 3.25
371 603 0.179062 ATCAGCTCAATCTGCCCGAC 60.179 55.000 0.00 0.00 34.19 4.79
378 610 1.302511 AATCTGCCCGACACACCAC 60.303 57.895 0.00 0.00 0.00 4.16
420 652 2.587753 CCGCACCACGTCAACACT 60.588 61.111 0.00 0.00 41.42 3.55
423 655 1.522806 GCACCACGTCAACACTGGA 60.523 57.895 0.00 0.00 0.00 3.86
437 669 0.608130 ACTGGAAGACGCAGCATACA 59.392 50.000 0.00 0.00 37.43 2.29
439 671 1.662629 CTGGAAGACGCAGCATACAAG 59.337 52.381 0.00 0.00 34.07 3.16
447 679 1.802636 CAGCATACAAGGCCAACCG 59.197 57.895 5.01 0.00 42.76 4.44
448 680 0.676466 CAGCATACAAGGCCAACCGA 60.676 55.000 5.01 0.00 42.76 4.69
449 681 0.392998 AGCATACAAGGCCAACCGAG 60.393 55.000 5.01 0.00 42.76 4.63
450 682 1.993369 GCATACAAGGCCAACCGAGC 61.993 60.000 5.01 0.00 42.76 5.03
460 692 1.227823 CAACCGAGCCAACCAGTCA 60.228 57.895 0.00 0.00 0.00 3.41
479 711 2.107041 AACAACCCACAGATCGCCGA 62.107 55.000 0.00 0.00 0.00 5.54
529 762 2.355244 GCTACAGGCCGAGATCGC 60.355 66.667 0.00 0.00 38.18 4.58
535 768 4.451150 GGCCGAGATCGCCACACA 62.451 66.667 5.33 0.00 38.18 3.72
537 770 2.887568 CCGAGATCGCCACACAGC 60.888 66.667 0.00 0.00 38.18 4.40
558 791 1.798223 CAACGAATCACAGGAAGCGAA 59.202 47.619 0.00 0.00 0.00 4.70
645 878 4.221422 GCAGTGGATCCGCGGCTA 62.221 66.667 34.31 4.04 42.61 3.93
650 894 4.394712 GGATCCGCGGCTATGGGG 62.395 72.222 23.51 0.00 42.99 4.96
680 925 0.394565 CCGAGTGGGGAGATGGAATC 59.605 60.000 0.00 0.00 46.04 2.52
689 934 4.055654 GATGGAATCCAGCCGAGC 57.944 61.111 6.20 0.00 37.38 5.03
690 935 1.599240 GATGGAATCCAGCCGAGCC 60.599 63.158 6.20 0.00 37.38 4.70
691 936 3.466791 ATGGAATCCAGCCGAGCCG 62.467 63.158 8.40 0.00 36.75 5.52
718 964 2.114411 GCTTTTCCCCCGTGGACA 59.886 61.111 0.00 0.00 45.11 4.02
741 987 4.339814 ACAACGCAACCCTTCTATCAAAAA 59.660 37.500 0.00 0.00 0.00 1.94
768 1016 2.650778 CGCAACCCTGGCTTTTCC 59.349 61.111 0.00 0.00 0.00 3.13
800 1048 2.885861 GTCAGCTGTCCGATCGGT 59.114 61.111 32.15 11.40 36.47 4.69
801 1049 1.215647 GTCAGCTGTCCGATCGGTT 59.784 57.895 32.15 12.21 36.47 4.44
806 1054 1.067582 CTGTCCGATCGGTTAGGGC 59.932 63.158 32.15 16.60 36.47 5.19
812 1060 0.179119 CGATCGGTTAGGGCGTTTCT 60.179 55.000 7.38 0.00 0.00 2.52
814 1062 0.899720 ATCGGTTAGGGCGTTTCTCA 59.100 50.000 0.00 0.00 0.00 3.27
820 1068 0.037975 TAGGGCGTTTCTCAACCGTC 60.038 55.000 0.00 0.00 0.00 4.79
866 1114 1.153369 CCGGCCCAGGATATATGCG 60.153 63.158 0.00 0.00 0.00 4.73
867 1115 1.815421 CGGCCCAGGATATATGCGC 60.815 63.158 0.00 0.00 0.00 6.09
868 1116 1.452108 GGCCCAGGATATATGCGCC 60.452 63.158 4.18 6.00 34.68 6.53
869 1117 1.815421 GCCCAGGATATATGCGCCG 60.815 63.158 4.18 0.00 0.00 6.46
870 1118 1.897423 CCCAGGATATATGCGCCGA 59.103 57.895 4.18 0.00 0.00 5.54
871 1119 0.179100 CCCAGGATATATGCGCCGAG 60.179 60.000 4.18 0.00 0.00 4.63
872 1120 0.179100 CCAGGATATATGCGCCGAGG 60.179 60.000 4.18 0.00 0.00 4.63
873 1121 0.807667 CAGGATATATGCGCCGAGGC 60.808 60.000 4.18 3.59 37.85 4.70
895 1143 1.528309 CCTCCCTCTCGAGCTCCTC 60.528 68.421 7.81 0.00 0.00 3.71
942 1190 3.323136 GCGGCGCGACATAGACAG 61.323 66.667 19.09 0.00 0.00 3.51
951 1199 2.939756 GCGACATAGACAGAGACAGAGA 59.060 50.000 0.00 0.00 0.00 3.10
952 1200 3.002246 GCGACATAGACAGAGACAGAGAG 59.998 52.174 0.00 0.00 0.00 3.20
955 1203 5.670485 GACATAGACAGAGACAGAGAGAGA 58.330 45.833 0.00 0.00 0.00 3.10
956 1204 5.674525 ACATAGACAGAGACAGAGAGAGAG 58.325 45.833 0.00 0.00 0.00 3.20
957 1205 5.425217 ACATAGACAGAGACAGAGAGAGAGA 59.575 44.000 0.00 0.00 0.00 3.10
958 1206 4.478206 AGACAGAGACAGAGAGAGAGAG 57.522 50.000 0.00 0.00 0.00 3.20
959 1207 4.096681 AGACAGAGACAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
960 1208 4.161189 AGACAGAGACAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
961 1209 4.096681 ACAGAGACAGAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
962 1210 4.161189 ACAGAGACAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
963 1211 3.708631 AGAGACAGAGAGAGAGAGAGAGG 59.291 52.174 0.00 0.00 0.00 3.69
964 1212 2.774234 AGACAGAGAGAGAGAGAGAGGG 59.226 54.545 0.00 0.00 0.00 4.30
965 1213 1.846439 ACAGAGAGAGAGAGAGAGGGG 59.154 57.143 0.00 0.00 0.00 4.79
966 1214 1.143684 CAGAGAGAGAGAGAGAGGGGG 59.856 61.905 0.00 0.00 0.00 5.40
967 1215 1.010793 AGAGAGAGAGAGAGAGGGGGA 59.989 57.143 0.00 0.00 0.00 4.81
968 1216 1.421646 GAGAGAGAGAGAGAGGGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
969 1217 0.478507 GAGAGAGAGAGAGGGGGAGG 59.521 65.000 0.00 0.00 0.00 4.30
970 1218 0.998945 AGAGAGAGAGAGGGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
975 1223 1.550374 AGAGAGGGGGAGGGAGGAA 60.550 63.158 0.00 0.00 0.00 3.36
1025 1273 3.441290 CGGCGAGGAGACCTTCGT 61.441 66.667 0.00 0.00 31.76 3.85
1159 1410 4.742649 AGCGCGACCTGGAGGAGA 62.743 66.667 12.10 0.00 38.94 3.71
1169 1420 3.077556 GGAGGAGAAGCTGGCCGA 61.078 66.667 0.00 0.00 0.00 5.54
1170 1421 2.498726 GAGGAGAAGCTGGCCGAG 59.501 66.667 0.00 0.00 0.00 4.63
1410 1661 2.659016 CACCAGGAGAAGCTCGCA 59.341 61.111 0.00 0.00 0.00 5.10
1503 1759 4.115199 CCCTCGGCCAAGGAAGGG 62.115 72.222 12.80 10.50 38.87 3.95
1611 1867 2.503356 CAAGAGGTAATCTGGTGCTCCT 59.497 50.000 6.34 0.00 38.67 3.69
1614 1870 4.561752 AGAGGTAATCTGGTGCTCCTAAT 58.438 43.478 6.34 0.00 36.69 1.73
1616 1872 3.648545 AGGTAATCTGGTGCTCCTAATCC 59.351 47.826 6.34 2.02 34.23 3.01
1618 1874 3.567478 AATCTGGTGCTCCTAATCCAC 57.433 47.619 6.34 0.00 34.23 4.02
1623 1879 2.967615 GCTCCTAATCCACGCGCC 60.968 66.667 5.73 0.00 0.00 6.53
1739 2001 3.998341 TGGATTTACGTTCTGCTGGTTAC 59.002 43.478 0.00 0.00 0.00 2.50
1744 2006 1.067071 ACGTTCTGCTGGTTACTAGCC 60.067 52.381 17.68 1.73 40.42 3.93
1766 2028 1.674962 GATGAATCTGCAGAGTTGGGC 59.325 52.381 22.96 8.08 0.00 5.36
1770 2032 0.403271 ATCTGCAGAGTTGGGCACTT 59.597 50.000 22.96 0.00 35.01 3.16
1771 2033 1.055849 TCTGCAGAGTTGGGCACTTA 58.944 50.000 13.74 0.00 35.01 2.24
1793 2056 1.930567 TCGCGAGCCCTTATGTTTAC 58.069 50.000 3.71 0.00 0.00 2.01
1844 2152 0.603569 AAGACTACGTGAGCCACCTG 59.396 55.000 0.00 0.00 0.00 4.00
1845 2153 0.539901 AGACTACGTGAGCCACCTGT 60.540 55.000 0.00 0.00 0.00 4.00
1846 2154 0.317479 GACTACGTGAGCCACCTGTT 59.683 55.000 0.00 0.00 0.00 3.16
1847 2155 0.033504 ACTACGTGAGCCACCTGTTG 59.966 55.000 0.00 0.00 0.00 3.33
1848 2156 1.291877 CTACGTGAGCCACCTGTTGC 61.292 60.000 0.00 0.00 0.00 4.17
1849 2157 1.754380 TACGTGAGCCACCTGTTGCT 61.754 55.000 0.00 0.00 41.42 3.91
1850 2158 2.610694 CGTGAGCCACCTGTTGCTG 61.611 63.158 0.02 0.00 38.11 4.41
1851 2159 2.595463 TGAGCCACCTGTTGCTGC 60.595 61.111 0.02 0.00 38.11 5.25
1852 2160 2.282040 GAGCCACCTGTTGCTGCT 60.282 61.111 0.02 0.00 38.11 4.24
1912 2220 8.370182 ACTTCATTGGTTATTTTTCTGCATTCT 58.630 29.630 0.00 0.00 0.00 2.40
1926 2234 1.266175 GCATTCTGCATTCTGGGATCG 59.734 52.381 0.00 0.00 44.26 3.69
1927 2235 1.266175 CATTCTGCATTCTGGGATCGC 59.734 52.381 2.14 2.14 0.00 4.58
1929 2237 0.179065 TCTGCATTCTGGGATCGCTG 60.179 55.000 11.46 10.68 0.00 5.18
1930 2238 0.463295 CTGCATTCTGGGATCGCTGT 60.463 55.000 11.46 0.00 0.00 4.40
1940 2248 2.343758 ATCGCTGTGCGGTCAAGT 59.656 55.556 12.01 0.00 44.10 3.16
1941 2249 2.029288 ATCGCTGTGCGGTCAAGTG 61.029 57.895 12.01 0.00 44.10 3.16
1942 2250 2.434658 ATCGCTGTGCGGTCAAGTGA 62.435 55.000 12.01 0.00 44.10 3.41
1943 2251 3.731136 GCTGTGCGGTCAAGTGAA 58.269 55.556 0.00 0.00 0.00 3.18
1944 2252 2.021722 GCTGTGCGGTCAAGTGAAA 58.978 52.632 0.00 0.00 0.00 2.69
1945 2253 0.593128 GCTGTGCGGTCAAGTGAAAT 59.407 50.000 0.00 0.00 0.00 2.17
1946 2254 1.001378 GCTGTGCGGTCAAGTGAAATT 60.001 47.619 0.00 0.00 0.00 1.82
1947 2255 2.653890 CTGTGCGGTCAAGTGAAATTG 58.346 47.619 0.00 0.00 0.00 2.32
1948 2256 2.020720 TGTGCGGTCAAGTGAAATTGT 58.979 42.857 0.00 0.00 0.00 2.71
1949 2257 2.425312 TGTGCGGTCAAGTGAAATTGTT 59.575 40.909 0.00 0.00 0.00 2.83
1950 2258 2.788786 GTGCGGTCAAGTGAAATTGTTG 59.211 45.455 0.00 0.00 0.00 3.33
1951 2259 2.425312 TGCGGTCAAGTGAAATTGTTGT 59.575 40.909 0.00 0.00 0.00 3.32
1952 2260 2.788786 GCGGTCAAGTGAAATTGTTGTG 59.211 45.455 0.00 0.00 0.00 3.33
1953 2261 3.488384 GCGGTCAAGTGAAATTGTTGTGA 60.488 43.478 0.00 0.00 0.00 3.58
1954 2262 4.792704 GCGGTCAAGTGAAATTGTTGTGAT 60.793 41.667 0.00 0.00 0.00 3.06
1955 2263 5.280945 CGGTCAAGTGAAATTGTTGTGATT 58.719 37.500 0.00 0.00 0.00 2.57
1956 2264 5.173673 CGGTCAAGTGAAATTGTTGTGATTG 59.826 40.000 0.00 0.00 0.00 2.67
1957 2265 5.463061 GGTCAAGTGAAATTGTTGTGATTGG 59.537 40.000 0.00 0.00 0.00 3.16
1958 2266 6.272318 GTCAAGTGAAATTGTTGTGATTGGA 58.728 36.000 0.00 0.00 0.00 3.53
1959 2267 6.756074 GTCAAGTGAAATTGTTGTGATTGGAA 59.244 34.615 0.00 0.00 0.00 3.53
1960 2268 7.277539 GTCAAGTGAAATTGTTGTGATTGGAAA 59.722 33.333 0.00 0.00 0.00 3.13
1961 2269 7.986320 TCAAGTGAAATTGTTGTGATTGGAAAT 59.014 29.630 0.00 0.00 0.00 2.17
1962 2270 9.258826 CAAGTGAAATTGTTGTGATTGGAAATA 57.741 29.630 0.00 0.00 0.00 1.40
1963 2271 8.816640 AGTGAAATTGTTGTGATTGGAAATAC 57.183 30.769 0.00 0.00 0.00 1.89
1964 2272 8.420222 AGTGAAATTGTTGTGATTGGAAATACA 58.580 29.630 0.00 0.00 0.00 2.29
1965 2273 8.702438 GTGAAATTGTTGTGATTGGAAATACAG 58.298 33.333 0.00 0.00 0.00 2.74
1966 2274 8.420222 TGAAATTGTTGTGATTGGAAATACAGT 58.580 29.630 0.00 0.00 0.00 3.55
1967 2275 9.906660 GAAATTGTTGTGATTGGAAATACAGTA 57.093 29.630 0.00 0.00 0.00 2.74
1968 2276 9.912634 AAATTGTTGTGATTGGAAATACAGTAG 57.087 29.630 0.00 0.00 0.00 2.57
1969 2277 8.862325 ATTGTTGTGATTGGAAATACAGTAGA 57.138 30.769 0.00 0.00 0.00 2.59
1970 2278 7.905604 TGTTGTGATTGGAAATACAGTAGAG 57.094 36.000 0.00 0.00 0.00 2.43
1971 2279 6.371548 TGTTGTGATTGGAAATACAGTAGAGC 59.628 38.462 0.00 0.00 0.00 4.09
1972 2280 6.048732 TGTGATTGGAAATACAGTAGAGCA 57.951 37.500 0.00 0.00 0.00 4.26
1973 2281 5.874810 TGTGATTGGAAATACAGTAGAGCAC 59.125 40.000 0.00 0.00 0.00 4.40
1974 2282 5.874810 GTGATTGGAAATACAGTAGAGCACA 59.125 40.000 0.00 0.00 0.00 4.57
1975 2283 6.540189 GTGATTGGAAATACAGTAGAGCACAT 59.460 38.462 0.00 0.00 0.00 3.21
1976 2284 6.539826 TGATTGGAAATACAGTAGAGCACATG 59.460 38.462 0.00 0.00 0.00 3.21
1977 2285 4.191544 TGGAAATACAGTAGAGCACATGC 58.808 43.478 0.00 0.00 42.49 4.06
1992 2300 3.715628 ACATGCTGAGTGTGAAAAACC 57.284 42.857 0.00 0.00 0.00 3.27
1993 2301 2.033299 ACATGCTGAGTGTGAAAAACCG 59.967 45.455 0.00 0.00 0.00 4.44
1994 2302 1.021202 TGCTGAGTGTGAAAAACCGG 58.979 50.000 0.00 0.00 0.00 5.28
1995 2303 0.317854 GCTGAGTGTGAAAAACCGGC 60.318 55.000 0.00 0.00 0.00 6.13
1996 2304 1.308998 CTGAGTGTGAAAAACCGGCT 58.691 50.000 0.00 0.00 0.00 5.52
1997 2305 2.489971 CTGAGTGTGAAAAACCGGCTA 58.510 47.619 0.00 0.00 0.00 3.93
1998 2306 3.074412 CTGAGTGTGAAAAACCGGCTAT 58.926 45.455 0.00 0.00 0.00 2.97
1999 2307 3.482436 TGAGTGTGAAAAACCGGCTATT 58.518 40.909 0.00 0.00 0.00 1.73
2000 2308 3.252215 TGAGTGTGAAAAACCGGCTATTG 59.748 43.478 0.00 0.00 0.00 1.90
2001 2309 2.556622 AGTGTGAAAAACCGGCTATTGG 59.443 45.455 0.00 0.00 0.00 3.16
2002 2310 2.295070 GTGTGAAAAACCGGCTATTGGT 59.705 45.455 0.00 0.00 42.98 3.67
2009 2317 2.038387 ACCGGCTATTGGTTGATCAC 57.962 50.000 0.00 0.00 35.82 3.06
2010 2318 1.559682 ACCGGCTATTGGTTGATCACT 59.440 47.619 0.00 0.00 35.82 3.41
2011 2319 2.026262 ACCGGCTATTGGTTGATCACTT 60.026 45.455 0.00 0.00 35.82 3.16
2012 2320 2.355756 CCGGCTATTGGTTGATCACTTG 59.644 50.000 0.00 0.00 0.00 3.16
2013 2321 3.009723 CGGCTATTGGTTGATCACTTGT 58.990 45.455 0.00 0.00 0.00 3.16
2014 2322 3.181507 CGGCTATTGGTTGATCACTTGTG 60.182 47.826 0.00 0.00 0.00 3.33
2015 2323 3.758554 GGCTATTGGTTGATCACTTGTGT 59.241 43.478 0.00 0.00 0.00 3.72
2016 2324 4.218417 GGCTATTGGTTGATCACTTGTGTT 59.782 41.667 0.00 0.00 0.00 3.32
2017 2325 5.414454 GGCTATTGGTTGATCACTTGTGTTA 59.586 40.000 0.00 0.00 0.00 2.41
2018 2326 6.095440 GGCTATTGGTTGATCACTTGTGTTAT 59.905 38.462 0.00 0.00 0.00 1.89
2019 2327 7.362920 GGCTATTGGTTGATCACTTGTGTTATT 60.363 37.037 0.00 0.00 0.00 1.40
2020 2328 7.698130 GCTATTGGTTGATCACTTGTGTTATTC 59.302 37.037 0.00 0.00 0.00 1.75
2021 2329 5.605564 TGGTTGATCACTTGTGTTATTCG 57.394 39.130 0.00 0.00 0.00 3.34
2022 2330 4.083537 TGGTTGATCACTTGTGTTATTCGC 60.084 41.667 0.00 0.00 0.00 4.70
2023 2331 4.083537 GGTTGATCACTTGTGTTATTCGCA 60.084 41.667 0.00 0.00 34.52 5.10
2024 2332 5.448438 GTTGATCACTTGTGTTATTCGCAA 58.552 37.500 0.00 0.00 43.12 4.85
2025 2333 5.029650 TGATCACTTGTGTTATTCGCAAC 57.970 39.130 0.00 0.00 40.93 4.17
2026 2334 4.754618 TGATCACTTGTGTTATTCGCAACT 59.245 37.500 0.00 0.00 40.93 3.16
2027 2335 4.466567 TCACTTGTGTTATTCGCAACTG 57.533 40.909 0.46 0.00 40.93 3.16
2028 2336 2.973224 CACTTGTGTTATTCGCAACTGC 59.027 45.455 0.00 0.00 40.93 4.40
2029 2337 2.878406 ACTTGTGTTATTCGCAACTGCT 59.122 40.909 0.00 0.00 40.93 4.24
2030 2338 4.062293 ACTTGTGTTATTCGCAACTGCTA 58.938 39.130 0.00 0.00 40.93 3.49
2031 2339 4.695455 ACTTGTGTTATTCGCAACTGCTAT 59.305 37.500 0.00 0.00 40.93 2.97
2032 2340 4.598406 TGTGTTATTCGCAACTGCTATG 57.402 40.909 0.00 0.00 39.32 2.23
2033 2341 3.373748 TGTGTTATTCGCAACTGCTATGG 59.626 43.478 0.00 0.00 39.32 2.74
2034 2342 3.374058 GTGTTATTCGCAACTGCTATGGT 59.626 43.478 0.00 0.00 39.32 3.55
2035 2343 3.373748 TGTTATTCGCAACTGCTATGGTG 59.626 43.478 0.00 0.00 39.32 4.17
2036 2344 2.401583 ATTCGCAACTGCTATGGTGA 57.598 45.000 0.00 0.00 39.32 4.02
2037 2345 2.177394 TTCGCAACTGCTATGGTGAA 57.823 45.000 0.00 0.00 39.32 3.18
2038 2346 2.401583 TCGCAACTGCTATGGTGAAT 57.598 45.000 0.00 0.00 39.32 2.57
2039 2347 2.009051 TCGCAACTGCTATGGTGAATG 58.991 47.619 0.00 0.00 39.32 2.67
2040 2348 1.532505 CGCAACTGCTATGGTGAATGC 60.533 52.381 0.00 0.00 39.32 3.56
2041 2349 1.202336 GCAACTGCTATGGTGAATGCC 60.202 52.381 0.00 0.00 38.21 4.40
2042 2350 2.372264 CAACTGCTATGGTGAATGCCT 58.628 47.619 0.00 0.00 0.00 4.75
2043 2351 2.338577 ACTGCTATGGTGAATGCCTC 57.661 50.000 0.00 0.00 0.00 4.70
2044 2352 1.842562 ACTGCTATGGTGAATGCCTCT 59.157 47.619 0.00 0.00 0.00 3.69
2045 2353 3.041211 ACTGCTATGGTGAATGCCTCTA 58.959 45.455 0.00 0.00 0.00 2.43
2046 2354 3.070734 ACTGCTATGGTGAATGCCTCTAG 59.929 47.826 0.00 0.00 0.00 2.43
2047 2355 2.224378 TGCTATGGTGAATGCCTCTAGC 60.224 50.000 0.00 0.00 39.11 3.42
2057 2365 3.371087 GCCTCTAGCACAAGTAGGC 57.629 57.895 1.02 1.02 45.37 3.93
2058 2366 0.528684 GCCTCTAGCACAAGTAGGCG 60.529 60.000 1.02 0.00 42.98 5.52
2059 2367 0.818296 CCTCTAGCACAAGTAGGCGT 59.182 55.000 0.00 0.00 34.54 5.68
2060 2368 2.022195 CCTCTAGCACAAGTAGGCGTA 58.978 52.381 0.00 0.00 34.54 4.42
2061 2369 2.426024 CCTCTAGCACAAGTAGGCGTAA 59.574 50.000 0.00 0.00 34.54 3.18
2062 2370 3.119245 CCTCTAGCACAAGTAGGCGTAAA 60.119 47.826 0.00 0.00 34.54 2.01
2063 2371 3.841643 TCTAGCACAAGTAGGCGTAAAC 58.158 45.455 0.00 0.00 34.54 2.01
2064 2372 2.536761 AGCACAAGTAGGCGTAAACA 57.463 45.000 0.00 0.00 34.54 2.83
2065 2373 3.053831 AGCACAAGTAGGCGTAAACAT 57.946 42.857 0.00 0.00 34.54 2.71
2066 2374 4.196626 AGCACAAGTAGGCGTAAACATA 57.803 40.909 0.00 0.00 34.54 2.29
2067 2375 4.181578 AGCACAAGTAGGCGTAAACATAG 58.818 43.478 0.00 0.00 34.54 2.23
2068 2376 4.081862 AGCACAAGTAGGCGTAAACATAGA 60.082 41.667 0.00 0.00 34.54 1.98
2069 2377 4.032558 GCACAAGTAGGCGTAAACATAGAC 59.967 45.833 0.00 0.00 0.00 2.59
2070 2378 5.408356 CACAAGTAGGCGTAAACATAGACT 58.592 41.667 0.00 0.00 0.00 3.24
2071 2379 6.558009 CACAAGTAGGCGTAAACATAGACTA 58.442 40.000 0.00 0.00 0.00 2.59
2072 2380 6.691818 CACAAGTAGGCGTAAACATAGACTAG 59.308 42.308 0.00 0.00 0.00 2.57
2073 2381 6.376581 ACAAGTAGGCGTAAACATAGACTAGT 59.623 38.462 0.00 0.00 30.89 2.57
2074 2382 7.554118 ACAAGTAGGCGTAAACATAGACTAGTA 59.446 37.037 0.00 0.00 29.61 1.82
2075 2383 8.400947 CAAGTAGGCGTAAACATAGACTAGTAA 58.599 37.037 0.00 0.00 29.61 2.24
2076 2384 7.924940 AGTAGGCGTAAACATAGACTAGTAAC 58.075 38.462 0.00 0.00 28.03 2.50
2077 2385 6.764308 AGGCGTAAACATAGACTAGTAACA 57.236 37.500 0.00 0.00 0.00 2.41
2078 2386 6.793349 AGGCGTAAACATAGACTAGTAACAG 58.207 40.000 0.00 0.00 0.00 3.16
2079 2387 5.975939 GGCGTAAACATAGACTAGTAACAGG 59.024 44.000 0.00 0.00 0.00 4.00
2080 2388 5.975939 GCGTAAACATAGACTAGTAACAGGG 59.024 44.000 0.00 0.00 0.00 4.45
2081 2389 6.183360 GCGTAAACATAGACTAGTAACAGGGA 60.183 42.308 0.00 0.00 0.00 4.20
2082 2390 7.629222 GCGTAAACATAGACTAGTAACAGGGAA 60.629 40.741 0.00 0.00 0.00 3.97
2083 2391 7.914346 CGTAAACATAGACTAGTAACAGGGAAG 59.086 40.741 0.00 0.00 0.00 3.46
2084 2392 6.793505 AACATAGACTAGTAACAGGGAAGG 57.206 41.667 0.00 0.00 0.00 3.46
2085 2393 6.088541 ACATAGACTAGTAACAGGGAAGGA 57.911 41.667 0.00 0.00 0.00 3.36
2086 2394 6.500336 ACATAGACTAGTAACAGGGAAGGAA 58.500 40.000 0.00 0.00 0.00 3.36
2087 2395 6.380560 ACATAGACTAGTAACAGGGAAGGAAC 59.619 42.308 0.00 0.00 0.00 3.62
2088 2396 4.748701 AGACTAGTAACAGGGAAGGAACA 58.251 43.478 0.00 0.00 0.00 3.18
2089 2397 4.773149 AGACTAGTAACAGGGAAGGAACAG 59.227 45.833 0.00 0.00 0.00 3.16
2090 2398 4.490706 ACTAGTAACAGGGAAGGAACAGT 58.509 43.478 0.00 0.00 0.00 3.55
2091 2399 4.906060 ACTAGTAACAGGGAAGGAACAGTT 59.094 41.667 0.00 0.00 0.00 3.16
2092 2400 6.080009 ACTAGTAACAGGGAAGGAACAGTTA 58.920 40.000 0.00 0.00 0.00 2.24
2093 2401 5.224821 AGTAACAGGGAAGGAACAGTTAC 57.775 43.478 0.00 0.00 40.73 2.50
2094 2402 4.906060 AGTAACAGGGAAGGAACAGTTACT 59.094 41.667 9.29 9.29 43.80 2.24
2095 2403 3.771577 ACAGGGAAGGAACAGTTACTG 57.228 47.619 11.21 11.21 37.52 2.74
2096 2404 3.314693 ACAGGGAAGGAACAGTTACTGA 58.685 45.455 20.07 0.00 35.18 3.41
2097 2405 3.714798 ACAGGGAAGGAACAGTTACTGAA 59.285 43.478 20.07 0.00 35.18 3.02
2098 2406 4.351111 ACAGGGAAGGAACAGTTACTGAAT 59.649 41.667 20.07 7.24 35.18 2.57
2099 2407 5.163088 ACAGGGAAGGAACAGTTACTGAATT 60.163 40.000 20.07 3.48 35.18 2.17
2100 2408 5.770162 CAGGGAAGGAACAGTTACTGAATTT 59.230 40.000 20.07 2.69 35.18 1.82
2101 2409 6.940298 CAGGGAAGGAACAGTTACTGAATTTA 59.060 38.462 20.07 0.00 35.18 1.40
2102 2410 6.940867 AGGGAAGGAACAGTTACTGAATTTAC 59.059 38.462 20.07 3.84 35.18 2.01
2103 2411 6.150641 GGGAAGGAACAGTTACTGAATTTACC 59.849 42.308 20.07 12.83 35.18 2.85
2104 2412 6.713450 GGAAGGAACAGTTACTGAATTTACCA 59.287 38.462 20.07 0.00 35.18 3.25
2105 2413 7.094762 GGAAGGAACAGTTACTGAATTTACCAG 60.095 40.741 20.07 0.00 35.18 4.00
2106 2414 6.838382 AGGAACAGTTACTGAATTTACCAGT 58.162 36.000 20.07 3.99 45.75 4.00
2107 2415 7.970102 AGGAACAGTTACTGAATTTACCAGTA 58.030 34.615 20.07 0.00 43.79 2.74
2108 2416 8.603304 AGGAACAGTTACTGAATTTACCAGTAT 58.397 33.333 20.07 0.00 43.94 2.12
2109 2417 9.227777 GGAACAGTTACTGAATTTACCAGTATT 57.772 33.333 20.07 0.00 43.94 1.89
2111 2419 8.561738 ACAGTTACTGAATTTACCAGTATTGG 57.438 34.615 20.07 2.07 43.94 3.16
2112 2420 7.610305 ACAGTTACTGAATTTACCAGTATTGGG 59.390 37.037 20.07 0.00 43.94 4.12
2113 2421 7.827236 CAGTTACTGAATTTACCAGTATTGGGA 59.173 37.037 6.50 0.00 43.94 4.37
2127 2435 8.640063 CCAGTATTGGGATGATGATAAATTGA 57.360 34.615 0.00 0.00 41.05 2.57
2128 2436 9.251440 CCAGTATTGGGATGATGATAAATTGAT 57.749 33.333 0.00 0.00 41.05 2.57
2135 2443 8.963725 TGGGATGATGATAAATTGATAATCAGC 58.036 33.333 9.28 9.28 36.74 4.26
2136 2444 8.411683 GGGATGATGATAAATTGATAATCAGCC 58.588 37.037 22.71 22.71 45.44 4.85
2137 2445 8.411683 GGATGATGATAAATTGATAATCAGCCC 58.588 37.037 21.05 14.09 42.17 5.19
2138 2446 9.186837 GATGATGATAAATTGATAATCAGCCCT 57.813 33.333 7.04 0.00 35.66 5.19
2139 2447 8.945195 TGATGATAAATTGATAATCAGCCCTT 57.055 30.769 0.00 0.00 35.66 3.95
2140 2448 8.799367 TGATGATAAATTGATAATCAGCCCTTG 58.201 33.333 0.00 0.00 35.66 3.61
2141 2449 8.716674 ATGATAAATTGATAATCAGCCCTTGT 57.283 30.769 0.00 0.00 33.40 3.16
2142 2450 8.537728 TGATAAATTGATAATCAGCCCTTGTT 57.462 30.769 0.00 0.00 0.00 2.83
2143 2451 8.415553 TGATAAATTGATAATCAGCCCTTGTTG 58.584 33.333 0.00 0.00 0.00 3.33
2144 2452 6.610075 AAATTGATAATCAGCCCTTGTTGT 57.390 33.333 0.00 0.00 0.00 3.32
2145 2453 6.610075 AATTGATAATCAGCCCTTGTTGTT 57.390 33.333 0.00 0.00 0.00 2.83
2146 2454 6.610075 ATTGATAATCAGCCCTTGTTGTTT 57.390 33.333 0.00 0.00 0.00 2.83
2147 2455 7.716799 ATTGATAATCAGCCCTTGTTGTTTA 57.283 32.000 0.00 0.00 0.00 2.01
2148 2456 7.716799 TTGATAATCAGCCCTTGTTGTTTAT 57.283 32.000 0.00 0.00 33.15 1.40
2149 2457 7.099266 TGATAATCAGCCCTTGTTGTTTATG 57.901 36.000 0.00 0.00 31.64 1.90
2150 2458 3.874392 ATCAGCCCTTGTTGTTTATGC 57.126 42.857 0.00 0.00 0.00 3.14
2151 2459 2.591923 TCAGCCCTTGTTGTTTATGCA 58.408 42.857 0.00 0.00 0.00 3.96
2152 2460 2.295909 TCAGCCCTTGTTGTTTATGCAC 59.704 45.455 0.00 0.00 0.00 4.57
2153 2461 2.297033 CAGCCCTTGTTGTTTATGCACT 59.703 45.455 0.00 0.00 0.00 4.40
2154 2462 2.965147 AGCCCTTGTTGTTTATGCACTT 59.035 40.909 0.00 0.00 0.00 3.16
2155 2463 3.387699 AGCCCTTGTTGTTTATGCACTTT 59.612 39.130 0.00 0.00 0.00 2.66
2156 2464 3.494251 GCCCTTGTTGTTTATGCACTTTG 59.506 43.478 0.00 0.00 0.00 2.77
2157 2465 4.692228 CCCTTGTTGTTTATGCACTTTGT 58.308 39.130 0.00 0.00 0.00 2.83
2158 2466 4.744631 CCCTTGTTGTTTATGCACTTTGTC 59.255 41.667 0.00 0.00 0.00 3.18
2159 2467 5.451798 CCCTTGTTGTTTATGCACTTTGTCT 60.452 40.000 0.00 0.00 0.00 3.41
2160 2468 6.042143 CCTTGTTGTTTATGCACTTTGTCTT 58.958 36.000 0.00 0.00 0.00 3.01
2161 2469 6.019640 CCTTGTTGTTTATGCACTTTGTCTTG 60.020 38.462 0.00 0.00 0.00 3.02
2162 2470 4.803088 TGTTGTTTATGCACTTTGTCTTGC 59.197 37.500 0.00 0.00 39.33 4.01
2163 2471 3.976169 TGTTTATGCACTTTGTCTTGCC 58.024 40.909 0.00 0.00 38.00 4.52
2164 2472 3.382865 TGTTTATGCACTTTGTCTTGCCA 59.617 39.130 0.00 0.00 38.00 4.92
2165 2473 4.039004 TGTTTATGCACTTTGTCTTGCCAT 59.961 37.500 0.00 0.00 38.00 4.40
2166 2474 2.736144 ATGCACTTTGTCTTGCCATG 57.264 45.000 0.00 0.00 38.00 3.66
2167 2475 0.675083 TGCACTTTGTCTTGCCATGG 59.325 50.000 7.63 7.63 38.00 3.66
2168 2476 0.675633 GCACTTTGTCTTGCCATGGT 59.324 50.000 14.67 0.00 32.21 3.55
2169 2477 1.885887 GCACTTTGTCTTGCCATGGTA 59.114 47.619 14.67 5.86 32.21 3.25
2170 2478 2.295909 GCACTTTGTCTTGCCATGGTAA 59.704 45.455 15.02 15.02 32.21 2.85
2171 2479 3.056607 GCACTTTGTCTTGCCATGGTAAT 60.057 43.478 16.19 0.00 32.21 1.89
2172 2480 4.157656 GCACTTTGTCTTGCCATGGTAATA 59.842 41.667 16.19 6.11 32.21 0.98
2173 2481 5.336372 GCACTTTGTCTTGCCATGGTAATAA 60.336 40.000 16.19 8.98 32.21 1.40
2174 2482 6.627953 GCACTTTGTCTTGCCATGGTAATAAT 60.628 38.462 16.19 0.00 32.21 1.28
2175 2483 7.416213 GCACTTTGTCTTGCCATGGTAATAATA 60.416 37.037 16.19 3.34 32.21 0.98
2176 2484 8.632679 CACTTTGTCTTGCCATGGTAATAATAT 58.367 33.333 16.19 1.63 0.00 1.28
2177 2485 8.632679 ACTTTGTCTTGCCATGGTAATAATATG 58.367 33.333 16.19 3.39 0.00 1.78
2178 2486 8.532186 TTTGTCTTGCCATGGTAATAATATGT 57.468 30.769 16.19 0.00 0.00 2.29
2179 2487 7.509141 TGTCTTGCCATGGTAATAATATGTG 57.491 36.000 16.19 1.91 0.00 3.21
2180 2488 7.286313 TGTCTTGCCATGGTAATAATATGTGA 58.714 34.615 16.19 4.36 0.00 3.58
2181 2489 7.777440 TGTCTTGCCATGGTAATAATATGTGAA 59.223 33.333 16.19 0.00 0.00 3.18
2182 2490 8.292448 GTCTTGCCATGGTAATAATATGTGAAG 58.708 37.037 16.19 0.00 0.00 3.02
2183 2491 8.217111 TCTTGCCATGGTAATAATATGTGAAGA 58.783 33.333 16.19 2.14 0.00 2.87
2184 2492 7.744087 TGCCATGGTAATAATATGTGAAGAC 57.256 36.000 14.67 0.00 0.00 3.01
2185 2493 7.517320 TGCCATGGTAATAATATGTGAAGACT 58.483 34.615 14.67 0.00 0.00 3.24
2186 2494 8.655901 TGCCATGGTAATAATATGTGAAGACTA 58.344 33.333 14.67 0.00 0.00 2.59
2187 2495 8.936864 GCCATGGTAATAATATGTGAAGACTAC 58.063 37.037 14.67 0.00 0.00 2.73
2188 2496 9.140286 CCATGGTAATAATATGTGAAGACTACG 57.860 37.037 2.57 0.00 0.00 3.51
2189 2497 8.648097 CATGGTAATAATATGTGAAGACTACGC 58.352 37.037 0.00 0.00 0.00 4.42
2190 2498 7.948357 TGGTAATAATATGTGAAGACTACGCT 58.052 34.615 0.00 0.00 0.00 5.07
2191 2499 9.070179 TGGTAATAATATGTGAAGACTACGCTA 57.930 33.333 0.00 0.00 0.00 4.26
2192 2500 9.557338 GGTAATAATATGTGAAGACTACGCTAG 57.443 37.037 0.00 0.00 0.00 3.42
2193 2501 9.063739 GTAATAATATGTGAAGACTACGCTAGC 57.936 37.037 4.06 4.06 0.00 3.42
2194 2502 2.873133 ATGTGAAGACTACGCTAGCC 57.127 50.000 9.66 0.00 0.00 3.93
2195 2503 1.541379 TGTGAAGACTACGCTAGCCA 58.459 50.000 9.66 0.00 0.00 4.75
2196 2504 1.201647 TGTGAAGACTACGCTAGCCAC 59.798 52.381 9.66 9.19 0.00 5.01
2197 2505 0.815734 TGAAGACTACGCTAGCCACC 59.184 55.000 9.66 0.00 0.00 4.61
2198 2506 1.104630 GAAGACTACGCTAGCCACCT 58.895 55.000 9.66 0.00 0.00 4.00
2199 2507 0.818296 AAGACTACGCTAGCCACCTG 59.182 55.000 9.66 0.00 0.00 4.00
2200 2508 0.323542 AGACTACGCTAGCCACCTGT 60.324 55.000 9.66 3.11 0.00 4.00
2201 2509 0.531200 GACTACGCTAGCCACCTGTT 59.469 55.000 9.66 0.00 0.00 3.16
2202 2510 0.246635 ACTACGCTAGCCACCTGTTG 59.753 55.000 9.66 4.46 0.00 3.33
2203 2511 1.079405 TACGCTAGCCACCTGTTGC 60.079 57.895 9.66 0.00 0.00 4.17
2204 2512 1.541310 TACGCTAGCCACCTGTTGCT 61.541 55.000 9.66 1.30 41.57 3.91
2205 2513 2.393768 CGCTAGCCACCTGTTGCTG 61.394 63.158 9.66 0.00 38.52 4.41
2206 2514 2.694760 GCTAGCCACCTGTTGCTGC 61.695 63.158 2.29 0.00 38.52 5.25
2207 2515 1.002868 CTAGCCACCTGTTGCTGCT 60.003 57.895 6.16 0.00 38.52 4.24
2208 2516 0.250234 CTAGCCACCTGTTGCTGCTA 59.750 55.000 6.16 0.00 38.52 3.49
2209 2517 0.911769 TAGCCACCTGTTGCTGCTAT 59.088 50.000 6.16 0.00 38.52 2.97
2210 2518 0.038744 AGCCACCTGTTGCTGCTATT 59.961 50.000 0.00 0.00 36.23 1.73
2211 2519 1.281867 AGCCACCTGTTGCTGCTATTA 59.718 47.619 0.00 0.00 36.23 0.98
2212 2520 2.092212 AGCCACCTGTTGCTGCTATTAT 60.092 45.455 0.00 0.00 36.23 1.28
2213 2521 2.033801 GCCACCTGTTGCTGCTATTATG 59.966 50.000 0.00 0.00 0.00 1.90
2214 2522 2.033801 CCACCTGTTGCTGCTATTATGC 59.966 50.000 0.00 0.00 0.00 3.14
2215 2523 2.947652 CACCTGTTGCTGCTATTATGCT 59.052 45.455 0.00 0.00 0.00 3.79
2216 2524 2.947652 ACCTGTTGCTGCTATTATGCTG 59.052 45.455 0.00 0.00 35.44 4.41
2233 2541 3.349927 TGCTGCTGCATCTAATTTCTGT 58.650 40.909 14.93 0.00 45.31 3.41
2234 2542 3.760151 TGCTGCTGCATCTAATTTCTGTT 59.240 39.130 14.93 0.00 45.31 3.16
2235 2543 4.142534 TGCTGCTGCATCTAATTTCTGTTC 60.143 41.667 14.93 0.00 45.31 3.18
2236 2544 4.096081 GCTGCTGCATCTAATTTCTGTTCT 59.904 41.667 11.11 0.00 39.41 3.01
2237 2545 5.392811 GCTGCTGCATCTAATTTCTGTTCTT 60.393 40.000 11.11 0.00 39.41 2.52
2238 2546 6.183360 GCTGCTGCATCTAATTTCTGTTCTTA 60.183 38.462 11.11 0.00 39.41 2.10
2239 2547 7.468357 GCTGCTGCATCTAATTTCTGTTCTTAT 60.468 37.037 11.11 0.00 39.41 1.73
2240 2548 7.923888 TGCTGCATCTAATTTCTGTTCTTATC 58.076 34.615 0.00 0.00 0.00 1.75
2241 2549 7.553760 TGCTGCATCTAATTTCTGTTCTTATCA 59.446 33.333 0.00 0.00 0.00 2.15
2242 2550 7.854916 GCTGCATCTAATTTCTGTTCTTATCAC 59.145 37.037 0.00 0.00 0.00 3.06
2243 2551 9.107177 CTGCATCTAATTTCTGTTCTTATCACT 57.893 33.333 0.00 0.00 0.00 3.41
2244 2552 9.453572 TGCATCTAATTTCTGTTCTTATCACTT 57.546 29.630 0.00 0.00 0.00 3.16
2245 2553 9.928236 GCATCTAATTTCTGTTCTTATCACTTC 57.072 33.333 0.00 0.00 0.00 3.01
2277 2585 3.256383 TGTTCTGCATTCTGGGATTGTTG 59.744 43.478 0.00 0.00 0.00 3.33
2278 2586 3.159213 TCTGCATTCTGGGATTGTTGT 57.841 42.857 0.00 0.00 0.00 3.32
2279 2587 2.821378 TCTGCATTCTGGGATTGTTGTG 59.179 45.455 0.00 0.00 0.00 3.33
2280 2588 1.273048 TGCATTCTGGGATTGTTGTGC 59.727 47.619 0.00 0.00 0.00 4.57
2281 2589 1.547372 GCATTCTGGGATTGTTGTGCT 59.453 47.619 0.00 0.00 0.00 4.40
2282 2590 2.673043 GCATTCTGGGATTGTTGTGCTG 60.673 50.000 0.00 0.00 0.00 4.41
2283 2591 2.363306 TTCTGGGATTGTTGTGCTGT 57.637 45.000 0.00 0.00 0.00 4.40
2284 2592 2.363306 TCTGGGATTGTTGTGCTGTT 57.637 45.000 0.00 0.00 0.00 3.16
2285 2593 1.955778 TCTGGGATTGTTGTGCTGTTG 59.044 47.619 0.00 0.00 0.00 3.33
2322 2630 6.033831 GTGAAATTGCTGTGATTGGAAATACG 59.966 38.462 0.00 0.00 0.00 3.06
2335 2643 3.386726 TGGAAATACGGTAGAGGACATGG 59.613 47.826 0.00 0.00 0.00 3.66
2385 2699 3.309682 CGTGTTATCCACAACTGCTATGG 59.690 47.826 0.00 0.00 44.78 2.74
2386 2700 3.065371 GTGTTATCCACAACTGCTATGGC 59.935 47.826 0.00 0.00 43.92 4.40
2404 2741 7.022384 GCTATGGCGTAAACATAGACTAGTAG 58.978 42.308 14.64 0.00 46.77 2.57
2407 2744 5.301045 TGGCGTAAACATAGACTAGTAGCAT 59.699 40.000 0.00 0.00 0.00 3.79
2439 2776 9.431887 GACAGTTACTGAATTTACCAGTATTGA 57.568 33.333 20.07 1.06 43.94 2.57
2514 2851 4.389374 TCCATTCTGTTCCTTGTGTTCTC 58.611 43.478 0.00 0.00 0.00 2.87
2520 2857 5.059161 TCTGTTCCTTGTGTTCTCTGATTG 58.941 41.667 0.00 0.00 0.00 2.67
2532 2869 1.462283 CTCTGATTGTTGTGCCGTCAG 59.538 52.381 0.00 0.00 38.07 3.51
2549 2886 4.332543 CCGTCAGCAGCTTTTTATGTGATA 59.667 41.667 0.00 0.00 0.00 2.15
2557 2894 6.896088 GCAGCTTTTTATGTGATAAAATTGCG 59.104 34.615 14.56 12.30 42.40 4.85
2588 2925 5.336690 GGAAATAGTGGAATGCTTGCTGAAA 60.337 40.000 0.00 0.00 0.00 2.69
2589 2926 5.927281 AATAGTGGAATGCTTGCTGAAAT 57.073 34.783 0.00 0.00 0.00 2.17
2590 2927 3.863142 AGTGGAATGCTTGCTGAAATC 57.137 42.857 0.00 0.00 0.00 2.17
2591 2928 3.428532 AGTGGAATGCTTGCTGAAATCT 58.571 40.909 0.00 0.00 0.00 2.40
2592 2929 3.192844 AGTGGAATGCTTGCTGAAATCTG 59.807 43.478 0.00 0.00 0.00 2.90
2593 2930 3.192001 GTGGAATGCTTGCTGAAATCTGA 59.808 43.478 0.00 0.00 0.00 3.27
2594 2931 3.827876 TGGAATGCTTGCTGAAATCTGAA 59.172 39.130 0.00 0.00 0.00 3.02
2595 2932 4.464951 TGGAATGCTTGCTGAAATCTGAAT 59.535 37.500 0.00 0.00 0.00 2.57
2596 2933 5.653330 TGGAATGCTTGCTGAAATCTGAATA 59.347 36.000 0.00 0.00 0.00 1.75
2597 2934 6.322969 TGGAATGCTTGCTGAAATCTGAATAT 59.677 34.615 0.00 0.00 0.00 1.28
2598 2935 6.641314 GGAATGCTTGCTGAAATCTGAATATG 59.359 38.462 0.00 0.00 0.00 1.78
2599 2936 6.954487 ATGCTTGCTGAAATCTGAATATGA 57.046 33.333 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.946768 GTCGGCATGCTAATTTAGGCA 59.053 47.619 18.92 4.68 42.80 4.75
2 3 1.946768 TGTCGGCATGCTAATTTAGGC 59.053 47.619 18.92 3.00 0.00 3.93
3 4 4.630894 TTTGTCGGCATGCTAATTTAGG 57.369 40.909 18.92 0.00 0.00 2.69
4 5 5.009010 AGGATTTGTCGGCATGCTAATTTAG 59.991 40.000 18.92 0.00 0.00 1.85
5 6 4.887071 AGGATTTGTCGGCATGCTAATTTA 59.113 37.500 18.92 0.00 0.00 1.40
6 7 3.701040 AGGATTTGTCGGCATGCTAATTT 59.299 39.130 18.92 0.00 0.00 1.82
8 9 2.936202 AGGATTTGTCGGCATGCTAAT 58.064 42.857 18.92 9.52 0.00 1.73
9 10 2.418368 AGGATTTGTCGGCATGCTAA 57.582 45.000 18.92 2.74 0.00 3.09
10 11 2.016318 CAAGGATTTGTCGGCATGCTA 58.984 47.619 18.92 3.12 0.00 3.49
12 13 0.527565 ACAAGGATTTGTCGGCATGC 59.472 50.000 9.90 9.90 44.00 4.06
25 112 2.563179 GTGAGTAAGGAGCAGACAAGGA 59.437 50.000 0.00 0.00 0.00 3.36
28 115 3.006967 GGAAGTGAGTAAGGAGCAGACAA 59.993 47.826 0.00 0.00 0.00 3.18
56 143 4.216257 TCCTGTGATTTTGCTTGCTACTTC 59.784 41.667 0.00 0.00 0.00 3.01
58 145 3.754965 TCCTGTGATTTTGCTTGCTACT 58.245 40.909 0.00 0.00 0.00 2.57
91 178 0.032540 ACGGTTACAACACGAGTCCC 59.967 55.000 9.08 0.00 0.00 4.46
95 182 4.461992 AAATTGACGGTTACAACACGAG 57.538 40.909 9.08 0.00 0.00 4.18
98 185 4.456914 CGGTAAATTGACGGTTACAACAC 58.543 43.478 0.00 0.00 32.83 3.32
101 188 2.483491 GGCGGTAAATTGACGGTTACAA 59.517 45.455 2.71 0.00 32.83 2.41
109 196 1.471287 GTGAAGGGGCGGTAAATTGAC 59.529 52.381 0.00 0.00 0.00 3.18
151 383 2.295909 GGCCATACTTGTTTGCTTGTCA 59.704 45.455 0.00 0.00 0.00 3.58
152 384 2.352715 GGGCCATACTTGTTTGCTTGTC 60.353 50.000 4.39 0.00 0.00 3.18
153 385 1.618343 GGGCCATACTTGTTTGCTTGT 59.382 47.619 4.39 0.00 0.00 3.16
154 386 1.066929 GGGGCCATACTTGTTTGCTTG 60.067 52.381 4.39 0.00 0.00 4.01
177 409 0.527113 TTTCGGCGTCGAGTTATCCA 59.473 50.000 13.59 0.00 46.75 3.41
178 410 1.849097 ATTTCGGCGTCGAGTTATCC 58.151 50.000 13.59 0.00 46.75 2.59
193 425 0.179210 TTTGTCGGCGCGCTAATTTC 60.179 50.000 32.29 12.20 0.00 2.17
202 434 3.284449 ACAAGGGTTTGTCGGCGC 61.284 61.111 0.00 0.00 44.00 6.53
216 448 0.827925 AGTGAGTGAGGAGCCGACAA 60.828 55.000 0.00 0.00 0.00 3.18
221 453 1.853963 TAGGAAGTGAGTGAGGAGCC 58.146 55.000 0.00 0.00 0.00 4.70
224 456 3.024547 CCGATTAGGAAGTGAGTGAGGA 58.975 50.000 0.00 0.00 45.00 3.71
262 494 4.093011 GGTGGATATATCTGAGCTCCTGT 58.907 47.826 12.15 0.00 0.00 4.00
264 496 3.245443 ACGGTGGATATATCTGAGCTCCT 60.245 47.826 12.15 0.00 0.00 3.69
265 497 3.093057 ACGGTGGATATATCTGAGCTCC 58.907 50.000 12.15 5.47 0.00 4.70
267 499 4.219507 CAGAACGGTGGATATATCTGAGCT 59.780 45.833 12.42 0.00 37.14 4.09
268 500 4.489810 CAGAACGGTGGATATATCTGAGC 58.510 47.826 12.42 8.18 37.14 4.26
269 501 4.489810 GCAGAACGGTGGATATATCTGAG 58.510 47.826 12.42 4.95 37.14 3.35
270 502 3.258372 GGCAGAACGGTGGATATATCTGA 59.742 47.826 12.42 0.00 37.14 3.27
271 503 3.259374 AGGCAGAACGGTGGATATATCTG 59.741 47.826 12.42 2.41 37.83 2.90
272 504 3.511477 AGGCAGAACGGTGGATATATCT 58.489 45.455 12.42 0.00 0.00 1.98
273 505 3.963428 AGGCAGAACGGTGGATATATC 57.037 47.619 3.96 3.96 0.00 1.63
274 506 5.363005 GGTATAGGCAGAACGGTGGATATAT 59.637 44.000 0.00 0.00 0.00 0.86
275 507 4.708421 GGTATAGGCAGAACGGTGGATATA 59.292 45.833 0.00 0.00 0.00 0.86
276 508 3.514309 GGTATAGGCAGAACGGTGGATAT 59.486 47.826 0.00 0.00 0.00 1.63
277 509 2.895404 GGTATAGGCAGAACGGTGGATA 59.105 50.000 0.00 0.00 0.00 2.59
278 510 1.692519 GGTATAGGCAGAACGGTGGAT 59.307 52.381 0.00 0.00 0.00 3.41
279 511 1.117150 GGTATAGGCAGAACGGTGGA 58.883 55.000 0.00 0.00 0.00 4.02
280 512 0.249322 CGGTATAGGCAGAACGGTGG 60.249 60.000 0.00 0.00 0.00 4.61
281 513 0.874607 GCGGTATAGGCAGAACGGTG 60.875 60.000 0.00 0.00 0.00 4.94
282 514 1.440476 GCGGTATAGGCAGAACGGT 59.560 57.895 0.00 0.00 0.00 4.83
283 515 1.660575 CGCGGTATAGGCAGAACGG 60.661 63.158 0.00 0.00 0.00 4.44
284 516 0.660595 CTCGCGGTATAGGCAGAACG 60.661 60.000 6.13 0.00 0.00 3.95
285 517 0.940047 GCTCGCGGTATAGGCAGAAC 60.940 60.000 6.13 0.00 0.00 3.01
286 518 1.362717 GCTCGCGGTATAGGCAGAA 59.637 57.895 6.13 0.00 0.00 3.02
287 519 1.826487 TGCTCGCGGTATAGGCAGA 60.826 57.895 6.13 0.00 0.00 4.26
288 520 1.661821 GTGCTCGCGGTATAGGCAG 60.662 63.158 6.13 0.00 33.47 4.85
289 521 1.672854 AAGTGCTCGCGGTATAGGCA 61.673 55.000 6.13 5.02 0.00 4.75
290 522 1.067582 AAGTGCTCGCGGTATAGGC 59.932 57.895 6.13 2.26 0.00 3.93
291 523 1.215655 GCAAGTGCTCGCGGTATAGG 61.216 60.000 6.13 0.00 38.21 2.57
292 524 1.215655 GGCAAGTGCTCGCGGTATAG 61.216 60.000 6.13 0.00 41.70 1.31
293 525 1.227147 GGCAAGTGCTCGCGGTATA 60.227 57.895 6.13 0.00 41.70 1.47
294 526 2.511600 GGCAAGTGCTCGCGGTAT 60.512 61.111 6.13 0.00 41.70 2.73
295 527 1.950973 TATGGCAAGTGCTCGCGGTA 61.951 55.000 6.13 0.00 41.70 4.02
296 528 3.309436 TATGGCAAGTGCTCGCGGT 62.309 57.895 6.13 0.00 41.70 5.68
297 529 2.511373 TATGGCAAGTGCTCGCGG 60.511 61.111 6.13 0.00 41.70 6.46
298 530 2.703409 GTATGGCAAGTGCTCGCG 59.297 61.111 0.00 0.00 41.70 5.87
299 531 0.804544 TACGTATGGCAAGTGCTCGC 60.805 55.000 2.85 0.00 41.70 5.03
300 532 0.921347 GTACGTATGGCAAGTGCTCG 59.079 55.000 0.00 6.28 41.70 5.03
301 533 2.295253 AGTACGTATGGCAAGTGCTC 57.705 50.000 0.00 0.00 41.70 4.26
302 534 2.494471 TGTAGTACGTATGGCAAGTGCT 59.506 45.455 13.78 13.78 41.70 4.40
328 560 1.450025 GTTTTGGTAGGCCGAGGAAG 58.550 55.000 0.00 0.00 37.67 3.46
359 591 1.302431 TGGTGTGTCGGGCAGATTG 60.302 57.895 0.00 0.00 0.00 2.67
367 599 4.980805 CGGTGGGTGGTGTGTCGG 62.981 72.222 0.00 0.00 0.00 4.79
378 610 2.438434 GATGTCTTGGCCGGTGGG 60.438 66.667 1.90 0.00 0.00 4.61
420 652 1.675714 CCTTGTATGCTGCGTCTTCCA 60.676 52.381 0.00 0.00 0.00 3.53
423 655 1.026718 GGCCTTGTATGCTGCGTCTT 61.027 55.000 0.00 0.00 0.00 3.01
447 679 0.668535 GGTTGTTGACTGGTTGGCTC 59.331 55.000 0.00 0.00 0.00 4.70
448 680 0.755327 GGGTTGTTGACTGGTTGGCT 60.755 55.000 0.00 0.00 0.00 4.75
449 681 1.040339 TGGGTTGTTGACTGGTTGGC 61.040 55.000 0.00 0.00 0.00 4.52
450 682 0.744281 GTGGGTTGTTGACTGGTTGG 59.256 55.000 0.00 0.00 0.00 3.77
451 683 1.405105 CTGTGGGTTGTTGACTGGTTG 59.595 52.381 0.00 0.00 0.00 3.77
460 692 1.671054 CGGCGATCTGTGGGTTGTT 60.671 57.895 0.00 0.00 0.00 2.83
479 711 9.871175 TTAAATCTTAGGGTTCTTAGGTGTTTT 57.129 29.630 0.00 0.00 0.00 2.43
529 762 0.238289 GTGATTCGTTGGCTGTGTGG 59.762 55.000 0.00 0.00 0.00 4.17
535 768 1.813513 CTTCCTGTGATTCGTTGGCT 58.186 50.000 0.00 0.00 0.00 4.75
537 770 0.443869 CGCTTCCTGTGATTCGTTGG 59.556 55.000 0.00 0.00 0.00 3.77
558 791 1.362717 CGATGGTAAGATCCGCGGT 59.637 57.895 27.15 12.96 0.00 5.68
640 873 3.560251 CTCCCCACCCCATAGCCG 61.560 72.222 0.00 0.00 0.00 5.52
641 874 2.368329 ACTCCCCACCCCATAGCC 60.368 66.667 0.00 0.00 0.00 3.93
643 876 2.757124 GCCACTCCCCACCCCATAG 61.757 68.421 0.00 0.00 0.00 2.23
644 877 2.694616 GCCACTCCCCACCCCATA 60.695 66.667 0.00 0.00 0.00 2.74
650 894 4.394712 CACTCGGCCACTCCCCAC 62.395 72.222 2.24 0.00 0.00 4.61
688 933 3.927481 AAAAGCAGAGGAGGGCGGC 62.927 63.158 0.00 0.00 34.54 6.53
689 934 1.746991 GAAAAGCAGAGGAGGGCGG 60.747 63.158 0.00 0.00 34.54 6.13
690 935 1.746991 GGAAAAGCAGAGGAGGGCG 60.747 63.158 0.00 0.00 34.54 6.13
691 936 1.379176 GGGAAAAGCAGAGGAGGGC 60.379 63.158 0.00 0.00 0.00 5.19
692 937 1.304617 GGGGAAAAGCAGAGGAGGG 59.695 63.158 0.00 0.00 0.00 4.30
718 964 2.851263 TGATAGAAGGGTTGCGTTGT 57.149 45.000 0.00 0.00 0.00 3.32
748 994 4.994756 AAAGCCAGGGTTGCGGGG 62.995 66.667 4.15 0.00 0.00 5.73
789 1037 2.777972 CGCCCTAACCGATCGGACA 61.778 63.158 39.55 23.97 38.96 4.02
800 1048 3.220447 CGGTTGAGAAACGCCCTAA 57.780 52.632 0.00 0.00 33.38 2.69
820 1068 0.107410 TCCCCAAATGTTCCGATCGG 60.107 55.000 28.62 28.62 0.00 4.18
829 1077 1.756538 GGAAATGCGATCCCCAAATGT 59.243 47.619 0.00 0.00 0.00 2.71
831 1079 1.032014 CGGAAATGCGATCCCCAAAT 58.968 50.000 0.00 0.00 33.13 2.32
833 1081 1.453015 CCGGAAATGCGATCCCCAA 60.453 57.895 0.00 0.00 33.13 4.12
834 1082 2.191908 CCGGAAATGCGATCCCCA 59.808 61.111 0.00 0.00 33.13 4.96
874 1122 4.851214 AGCTCGAGAGGGAGGGCC 62.851 72.222 18.75 0.00 34.56 5.80
875 1123 3.223589 GAGCTCGAGAGGGAGGGC 61.224 72.222 18.75 0.00 34.56 5.19
876 1124 2.520741 GGAGCTCGAGAGGGAGGG 60.521 72.222 18.75 0.00 34.56 4.30
877 1125 1.528309 GAGGAGCTCGAGAGGGAGG 60.528 68.421 18.75 0.00 34.56 4.30
878 1126 0.535102 GAGAGGAGCTCGAGAGGGAG 60.535 65.000 18.75 0.00 35.36 4.30
886 1134 2.043450 AGGGTGGAGAGGAGCTCG 60.043 66.667 7.83 0.00 44.91 5.03
895 1143 2.503061 CTGGATGCGAGGGTGGAG 59.497 66.667 0.00 0.00 0.00 3.86
935 1183 5.899547 TCTCTCTCTCTCTGTCTCTGTCTAT 59.100 44.000 0.00 0.00 0.00 1.98
940 1188 4.442612 CCTCTCTCTCTCTCTCTGTCTCTG 60.443 54.167 0.00 0.00 0.00 3.35
942 1190 3.181461 CCCTCTCTCTCTCTCTCTGTCTC 60.181 56.522 0.00 0.00 0.00 3.36
951 1199 0.998945 CCCTCCCCCTCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
952 1200 0.996762 TCCCTCCCCCTCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
955 1203 2.018086 CCTCCCTCCCCCTCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
956 1204 1.595058 TTCCTCCCTCCCCCTCTCTC 61.595 65.000 0.00 0.00 0.00 3.20
957 1205 1.550374 TTCCTCCCTCCCCCTCTCT 60.550 63.158 0.00 0.00 0.00 3.10
958 1206 1.074850 CTTCCTCCCTCCCCCTCTC 60.075 68.421 0.00 0.00 0.00 3.20
959 1207 3.124088 CTTCCTCCCTCCCCCTCT 58.876 66.667 0.00 0.00 0.00 3.69
960 1208 2.770475 GCTTCCTCCCTCCCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
961 1209 4.806339 CGCTTCCTCCCTCCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
966 1214 4.214327 CTCGCCGCTTCCTCCCTC 62.214 72.222 0.00 0.00 0.00 4.30
970 1218 3.607370 AAACCCTCGCCGCTTCCTC 62.607 63.158 0.00 0.00 0.00 3.71
1092 1340 4.077184 TCGTAGGCCTTGGCGTGG 62.077 66.667 12.58 8.56 0.00 4.94
1410 1661 2.026905 GCCTTGATCTCCTCCTCGAGT 61.027 57.143 12.31 0.00 0.00 4.18
1461 1712 1.229464 AGCAGCCTCCTCCTTGTCT 60.229 57.895 0.00 0.00 0.00 3.41
1570 1826 0.763223 AGGTTGAGGAGAACCACCGT 60.763 55.000 0.00 0.00 46.94 4.83
1611 1867 2.202824 CTTCCGGCGCGTGGATTA 60.203 61.111 20.34 8.09 34.91 1.75
1614 1870 4.612412 AAACTTCCGGCGCGTGGA 62.612 61.111 16.69 16.69 0.00 4.02
1616 1872 2.008697 CAAAAACTTCCGGCGCGTG 61.009 57.895 8.43 0.00 0.00 5.34
1618 1874 3.097114 GCAAAAACTTCCGGCGCG 61.097 61.111 0.00 0.00 0.00 6.86
1623 1879 1.927710 GCAGCAGAGCAAAAACTTCCG 60.928 52.381 0.00 0.00 0.00 4.30
1739 2001 3.069872 ACTCTGCAGATTCATCAGGCTAG 59.930 47.826 18.63 2.91 32.70 3.42
1744 2006 2.943690 CCCAACTCTGCAGATTCATCAG 59.056 50.000 18.63 6.08 0.00 2.90
1766 2028 2.440539 AAGGGCTCGCGATATAAGTG 57.559 50.000 10.36 0.00 0.00 3.16
1770 2032 4.530710 AAACATAAGGGCTCGCGATATA 57.469 40.909 10.36 0.00 0.00 0.86
1771 2033 3.402628 AAACATAAGGGCTCGCGATAT 57.597 42.857 10.36 0.40 0.00 1.63
1793 2056 1.735198 CATGGCAAGGCAAAGTGCG 60.735 57.895 0.00 0.00 46.21 5.34
1847 2155 3.769228 GCAGCAGCATAATAGCAGC 57.231 52.632 0.00 0.00 45.99 5.25
1912 2220 0.745486 CACAGCGATCCCAGAATGCA 60.745 55.000 0.00 0.00 31.97 3.96
1926 2234 0.593128 ATTTCACTTGACCGCACAGC 59.407 50.000 0.00 0.00 0.00 4.40
1927 2235 2.033299 ACAATTTCACTTGACCGCACAG 59.967 45.455 0.00 0.00 0.00 3.66
1929 2237 2.774439 ACAATTTCACTTGACCGCAC 57.226 45.000 0.00 0.00 0.00 5.34
1930 2238 2.425312 ACAACAATTTCACTTGACCGCA 59.575 40.909 0.00 0.00 0.00 5.69
1937 2245 9.260002 GTATTTCCAATCACAACAATTTCACTT 57.740 29.630 0.00 0.00 0.00 3.16
1938 2246 8.420222 TGTATTTCCAATCACAACAATTTCACT 58.580 29.630 0.00 0.00 0.00 3.41
1939 2247 8.586570 TGTATTTCCAATCACAACAATTTCAC 57.413 30.769 0.00 0.00 0.00 3.18
1940 2248 8.420222 ACTGTATTTCCAATCACAACAATTTCA 58.580 29.630 0.00 0.00 0.00 2.69
1941 2249 8.816640 ACTGTATTTCCAATCACAACAATTTC 57.183 30.769 0.00 0.00 0.00 2.17
1942 2250 9.912634 CTACTGTATTTCCAATCACAACAATTT 57.087 29.630 0.00 0.00 0.00 1.82
1943 2251 9.295825 TCTACTGTATTTCCAATCACAACAATT 57.704 29.630 0.00 0.00 0.00 2.32
1944 2252 8.862325 TCTACTGTATTTCCAATCACAACAAT 57.138 30.769 0.00 0.00 0.00 2.71
1945 2253 7.094805 GCTCTACTGTATTTCCAATCACAACAA 60.095 37.037 0.00 0.00 0.00 2.83
1946 2254 6.371548 GCTCTACTGTATTTCCAATCACAACA 59.628 38.462 0.00 0.00 0.00 3.33
1947 2255 6.371548 TGCTCTACTGTATTTCCAATCACAAC 59.628 38.462 0.00 0.00 0.00 3.32
1948 2256 6.371548 GTGCTCTACTGTATTTCCAATCACAA 59.628 38.462 0.00 0.00 0.00 3.33
1949 2257 5.874810 GTGCTCTACTGTATTTCCAATCACA 59.125 40.000 0.00 0.00 0.00 3.58
1950 2258 5.874810 TGTGCTCTACTGTATTTCCAATCAC 59.125 40.000 0.00 0.00 0.00 3.06
1951 2259 6.048732 TGTGCTCTACTGTATTTCCAATCA 57.951 37.500 0.00 0.00 0.00 2.57
1952 2260 6.512415 GCATGTGCTCTACTGTATTTCCAATC 60.512 42.308 0.00 0.00 38.21 2.67
1953 2261 5.297776 GCATGTGCTCTACTGTATTTCCAAT 59.702 40.000 0.00 0.00 38.21 3.16
1954 2262 4.635765 GCATGTGCTCTACTGTATTTCCAA 59.364 41.667 0.00 0.00 38.21 3.53
1955 2263 4.191544 GCATGTGCTCTACTGTATTTCCA 58.808 43.478 0.00 0.00 38.21 3.53
1956 2264 4.802876 GCATGTGCTCTACTGTATTTCC 57.197 45.455 0.00 0.00 38.21 3.13
1970 2278 2.780065 TTTTCACACTCAGCATGTGC 57.220 45.000 0.00 0.00 45.82 4.57
1972 2280 2.033299 CGGTTTTTCACACTCAGCATGT 59.967 45.455 0.00 0.00 37.40 3.21
1973 2281 2.605338 CCGGTTTTTCACACTCAGCATG 60.605 50.000 0.00 0.00 37.54 4.06
1974 2282 1.608590 CCGGTTTTTCACACTCAGCAT 59.391 47.619 0.00 0.00 0.00 3.79
1975 2283 1.021202 CCGGTTTTTCACACTCAGCA 58.979 50.000 0.00 0.00 0.00 4.41
1976 2284 0.317854 GCCGGTTTTTCACACTCAGC 60.318 55.000 1.90 0.00 0.00 4.26
1977 2285 1.308998 AGCCGGTTTTTCACACTCAG 58.691 50.000 1.90 0.00 0.00 3.35
1978 2286 2.623878 TAGCCGGTTTTTCACACTCA 57.376 45.000 1.90 0.00 0.00 3.41
1979 2287 3.365969 CCAATAGCCGGTTTTTCACACTC 60.366 47.826 1.90 0.00 0.00 3.51
1980 2288 2.556622 CCAATAGCCGGTTTTTCACACT 59.443 45.455 1.90 0.00 0.00 3.55
1981 2289 2.295070 ACCAATAGCCGGTTTTTCACAC 59.705 45.455 1.90 0.00 30.53 3.82
1982 2290 2.588620 ACCAATAGCCGGTTTTTCACA 58.411 42.857 1.90 0.00 30.53 3.58
1983 2291 3.004944 TCAACCAATAGCCGGTTTTTCAC 59.995 43.478 1.90 0.00 44.46 3.18
1984 2292 3.223435 TCAACCAATAGCCGGTTTTTCA 58.777 40.909 1.90 0.00 44.46 2.69
1985 2293 3.926821 TCAACCAATAGCCGGTTTTTC 57.073 42.857 1.90 0.00 44.46 2.29
1986 2294 3.829601 TGATCAACCAATAGCCGGTTTTT 59.170 39.130 1.90 0.00 44.46 1.94
1987 2295 3.192633 GTGATCAACCAATAGCCGGTTTT 59.807 43.478 1.90 0.00 44.46 2.43
1988 2296 2.752903 GTGATCAACCAATAGCCGGTTT 59.247 45.455 1.90 0.00 44.46 3.27
1990 2298 1.559682 AGTGATCAACCAATAGCCGGT 59.440 47.619 1.90 0.00 38.85 5.28
1991 2299 2.332063 AGTGATCAACCAATAGCCGG 57.668 50.000 0.00 0.00 0.00 6.13
1992 2300 3.009723 ACAAGTGATCAACCAATAGCCG 58.990 45.455 0.00 0.00 0.00 5.52
1993 2301 3.758554 ACACAAGTGATCAACCAATAGCC 59.241 43.478 7.28 0.00 0.00 3.93
1994 2302 5.376854 AACACAAGTGATCAACCAATAGC 57.623 39.130 7.28 0.00 0.00 2.97
1995 2303 7.904977 CGAATAACACAAGTGATCAACCAATAG 59.095 37.037 7.28 0.00 0.00 1.73
1996 2304 7.625395 GCGAATAACACAAGTGATCAACCAATA 60.625 37.037 7.28 0.00 0.00 1.90
1997 2305 6.611381 CGAATAACACAAGTGATCAACCAAT 58.389 36.000 7.28 0.00 0.00 3.16
1998 2306 5.561919 GCGAATAACACAAGTGATCAACCAA 60.562 40.000 7.28 0.00 0.00 3.67
1999 2307 4.083537 GCGAATAACACAAGTGATCAACCA 60.084 41.667 7.28 0.00 0.00 3.67
2000 2308 4.083537 TGCGAATAACACAAGTGATCAACC 60.084 41.667 7.28 0.00 0.00 3.77
2001 2309 5.029650 TGCGAATAACACAAGTGATCAAC 57.970 39.130 7.28 0.00 0.00 3.18
2002 2310 5.238432 AGTTGCGAATAACACAAGTGATCAA 59.762 36.000 7.28 0.00 33.02 2.57
2003 2311 4.754618 AGTTGCGAATAACACAAGTGATCA 59.245 37.500 7.28 0.00 33.02 2.92
2004 2312 5.082059 CAGTTGCGAATAACACAAGTGATC 58.918 41.667 7.28 0.00 44.03 2.92
2005 2313 4.613622 GCAGTTGCGAATAACACAAGTGAT 60.614 41.667 12.61 0.00 44.03 3.06
2006 2314 3.303725 GCAGTTGCGAATAACACAAGTGA 60.304 43.478 12.61 0.00 44.03 3.41
2007 2315 2.973224 GCAGTTGCGAATAACACAAGTG 59.027 45.455 5.62 5.62 44.09 3.16
2008 2316 3.268013 GCAGTTGCGAATAACACAAGT 57.732 42.857 0.00 0.00 33.02 3.16
2021 2329 1.202336 GGCATTCACCATAGCAGTTGC 60.202 52.381 0.00 0.00 42.49 4.17
2022 2330 2.357009 GAGGCATTCACCATAGCAGTTG 59.643 50.000 0.00 0.00 0.00 3.16
2023 2331 2.240667 AGAGGCATTCACCATAGCAGTT 59.759 45.455 0.00 0.00 0.00 3.16
2024 2332 1.842562 AGAGGCATTCACCATAGCAGT 59.157 47.619 0.00 0.00 0.00 4.40
2025 2333 2.634815 AGAGGCATTCACCATAGCAG 57.365 50.000 0.00 0.00 0.00 4.24
2026 2334 2.224378 GCTAGAGGCATTCACCATAGCA 60.224 50.000 10.98 0.00 42.48 3.49
2027 2335 2.421619 GCTAGAGGCATTCACCATAGC 58.578 52.381 0.00 0.00 38.96 2.97
2039 2347 3.371087 GCCTACTTGTGCTAGAGGC 57.629 57.895 0.00 0.00 45.48 4.70
2040 2348 0.818296 ACGCCTACTTGTGCTAGAGG 59.182 55.000 0.00 0.00 0.00 3.69
2041 2349 3.777465 TTACGCCTACTTGTGCTAGAG 57.223 47.619 0.00 0.00 0.00 2.43
2042 2350 3.256383 TGTTTACGCCTACTTGTGCTAGA 59.744 43.478 0.00 0.00 0.00 2.43
2043 2351 3.581755 TGTTTACGCCTACTTGTGCTAG 58.418 45.455 0.00 0.00 0.00 3.42
2044 2352 3.663995 TGTTTACGCCTACTTGTGCTA 57.336 42.857 0.00 0.00 0.00 3.49
2045 2353 2.536761 TGTTTACGCCTACTTGTGCT 57.463 45.000 0.00 0.00 0.00 4.40
2046 2354 4.032558 GTCTATGTTTACGCCTACTTGTGC 59.967 45.833 0.00 0.00 0.00 4.57
2047 2355 5.408356 AGTCTATGTTTACGCCTACTTGTG 58.592 41.667 0.00 0.00 0.00 3.33
2048 2356 5.656213 AGTCTATGTTTACGCCTACTTGT 57.344 39.130 0.00 0.00 0.00 3.16
2049 2357 6.793349 ACTAGTCTATGTTTACGCCTACTTG 58.207 40.000 0.00 0.00 0.00 3.16
2050 2358 8.401709 GTTACTAGTCTATGTTTACGCCTACTT 58.598 37.037 0.00 0.00 0.00 2.24
2051 2359 7.554118 TGTTACTAGTCTATGTTTACGCCTACT 59.446 37.037 0.00 0.00 0.00 2.57
2052 2360 7.697691 TGTTACTAGTCTATGTTTACGCCTAC 58.302 38.462 0.00 0.00 0.00 3.18
2053 2361 7.012704 CCTGTTACTAGTCTATGTTTACGCCTA 59.987 40.741 0.00 0.00 0.00 3.93
2054 2362 6.183360 CCTGTTACTAGTCTATGTTTACGCCT 60.183 42.308 0.00 0.00 0.00 5.52
2055 2363 5.975939 CCTGTTACTAGTCTATGTTTACGCC 59.024 44.000 0.00 0.00 0.00 5.68
2056 2364 5.975939 CCCTGTTACTAGTCTATGTTTACGC 59.024 44.000 0.00 0.00 0.00 4.42
2057 2365 7.325660 TCCCTGTTACTAGTCTATGTTTACG 57.674 40.000 0.00 0.00 0.00 3.18
2058 2366 8.196103 CCTTCCCTGTTACTAGTCTATGTTTAC 58.804 40.741 0.00 0.00 0.00 2.01
2059 2367 8.117956 TCCTTCCCTGTTACTAGTCTATGTTTA 58.882 37.037 0.00 0.00 0.00 2.01
2060 2368 6.958192 TCCTTCCCTGTTACTAGTCTATGTTT 59.042 38.462 0.00 0.00 0.00 2.83
2061 2369 6.500336 TCCTTCCCTGTTACTAGTCTATGTT 58.500 40.000 0.00 0.00 0.00 2.71
2062 2370 6.088541 TCCTTCCCTGTTACTAGTCTATGT 57.911 41.667 0.00 0.00 0.00 2.29
2063 2371 6.380274 TGTTCCTTCCCTGTTACTAGTCTATG 59.620 42.308 0.00 0.00 0.00 2.23
2064 2372 6.500336 TGTTCCTTCCCTGTTACTAGTCTAT 58.500 40.000 0.00 0.00 0.00 1.98
2065 2373 5.895807 TGTTCCTTCCCTGTTACTAGTCTA 58.104 41.667 0.00 0.00 0.00 2.59
2066 2374 4.748701 TGTTCCTTCCCTGTTACTAGTCT 58.251 43.478 0.00 0.00 0.00 3.24
2067 2375 4.527427 ACTGTTCCTTCCCTGTTACTAGTC 59.473 45.833 0.00 0.00 0.00 2.59
2068 2376 4.490706 ACTGTTCCTTCCCTGTTACTAGT 58.509 43.478 0.00 0.00 0.00 2.57
2069 2377 5.485209 AACTGTTCCTTCCCTGTTACTAG 57.515 43.478 0.00 0.00 0.00 2.57
2070 2378 6.014840 CAGTAACTGTTCCTTCCCTGTTACTA 60.015 42.308 16.44 0.00 46.00 1.82
2071 2379 4.906060 AGTAACTGTTCCTTCCCTGTTACT 59.094 41.667 13.08 13.08 44.48 2.24
2072 2380 4.995487 CAGTAACTGTTCCTTCCCTGTTAC 59.005 45.833 0.00 0.00 41.98 2.50
2073 2381 4.903049 TCAGTAACTGTTCCTTCCCTGTTA 59.097 41.667 0.00 0.00 32.61 2.41
2074 2382 3.714798 TCAGTAACTGTTCCTTCCCTGTT 59.285 43.478 0.00 0.00 32.61 3.16
2075 2383 3.314693 TCAGTAACTGTTCCTTCCCTGT 58.685 45.455 0.00 0.00 32.61 4.00
2076 2384 4.351874 TTCAGTAACTGTTCCTTCCCTG 57.648 45.455 0.00 0.00 32.61 4.45
2077 2385 5.584551 AATTCAGTAACTGTTCCTTCCCT 57.415 39.130 0.00 0.00 32.61 4.20
2078 2386 6.150641 GGTAAATTCAGTAACTGTTCCTTCCC 59.849 42.308 0.00 0.00 32.61 3.97
2079 2387 6.713450 TGGTAAATTCAGTAACTGTTCCTTCC 59.287 38.462 0.00 0.00 32.61 3.46
2080 2388 7.444487 ACTGGTAAATTCAGTAACTGTTCCTTC 59.556 37.037 0.00 0.00 42.91 3.46
2081 2389 7.287810 ACTGGTAAATTCAGTAACTGTTCCTT 58.712 34.615 0.00 0.00 42.91 3.36
2082 2390 6.838382 ACTGGTAAATTCAGTAACTGTTCCT 58.162 36.000 0.00 0.00 42.91 3.36
2083 2391 8.788325 ATACTGGTAAATTCAGTAACTGTTCC 57.212 34.615 8.95 0.00 46.61 3.62
2085 2393 9.010029 CCAATACTGGTAAATTCAGTAACTGTT 57.990 33.333 8.95 0.00 46.61 3.16
2086 2394 7.610305 CCCAATACTGGTAAATTCAGTAACTGT 59.390 37.037 8.95 0.46 46.61 3.55
2087 2395 7.827236 TCCCAATACTGGTAAATTCAGTAACTG 59.173 37.037 8.95 9.13 46.61 3.16
2088 2396 7.924541 TCCCAATACTGGTAAATTCAGTAACT 58.075 34.615 8.95 0.00 46.61 2.24
2089 2397 8.621286 CATCCCAATACTGGTAAATTCAGTAAC 58.379 37.037 8.95 0.00 46.61 2.50
2090 2398 8.553153 TCATCCCAATACTGGTAAATTCAGTAA 58.447 33.333 8.95 0.00 46.61 2.24
2092 2400 6.969043 TCATCCCAATACTGGTAAATTCAGT 58.031 36.000 3.99 3.99 46.02 3.41
2093 2401 7.720957 TCATCATCCCAATACTGGTAAATTCAG 59.279 37.037 0.00 0.00 41.72 3.02
2094 2402 7.581814 TCATCATCCCAATACTGGTAAATTCA 58.418 34.615 0.00 0.00 41.72 2.57
2095 2403 8.641498 ATCATCATCCCAATACTGGTAAATTC 57.359 34.615 0.00 0.00 41.72 2.17
2100 2408 9.519191 CAATTTATCATCATCCCAATACTGGTA 57.481 33.333 0.00 0.00 41.72 3.25
2101 2409 8.226810 TCAATTTATCATCATCCCAATACTGGT 58.773 33.333 0.00 0.00 41.72 4.00
2102 2410 8.640063 TCAATTTATCATCATCCCAATACTGG 57.360 34.615 0.00 0.00 43.10 4.00
2109 2417 8.963725 GCTGATTATCAATTTATCATCATCCCA 58.036 33.333 0.00 0.00 0.00 4.37
2110 2418 8.411683 GGCTGATTATCAATTTATCATCATCCC 58.588 37.037 5.78 3.36 27.03 3.85
2111 2419 8.411683 GGGCTGATTATCAATTTATCATCATCC 58.588 37.037 7.63 7.63 30.26 3.51
2112 2420 9.186837 AGGGCTGATTATCAATTTATCATCATC 57.813 33.333 0.00 0.00 0.00 2.92
2113 2421 9.543231 AAGGGCTGATTATCAATTTATCATCAT 57.457 29.630 0.00 0.00 0.00 2.45
2114 2422 8.799367 CAAGGGCTGATTATCAATTTATCATCA 58.201 33.333 0.00 0.00 0.00 3.07
2115 2423 8.800332 ACAAGGGCTGATTATCAATTTATCATC 58.200 33.333 0.00 0.00 0.00 2.92
2116 2424 8.716674 ACAAGGGCTGATTATCAATTTATCAT 57.283 30.769 0.00 0.00 0.00 2.45
2117 2425 8.415553 CAACAAGGGCTGATTATCAATTTATCA 58.584 33.333 0.00 0.00 0.00 2.15
2118 2426 8.416329 ACAACAAGGGCTGATTATCAATTTATC 58.584 33.333 0.00 0.00 0.00 1.75
2119 2427 8.310122 ACAACAAGGGCTGATTATCAATTTAT 57.690 30.769 0.00 0.00 0.00 1.40
2120 2428 7.716799 ACAACAAGGGCTGATTATCAATTTA 57.283 32.000 0.00 0.00 0.00 1.40
2121 2429 6.610075 ACAACAAGGGCTGATTATCAATTT 57.390 33.333 0.00 0.00 0.00 1.82
2122 2430 6.610075 AACAACAAGGGCTGATTATCAATT 57.390 33.333 0.00 0.00 0.00 2.32
2123 2431 6.610075 AAACAACAAGGGCTGATTATCAAT 57.390 33.333 0.00 0.00 0.00 2.57
2124 2432 7.546358 CATAAACAACAAGGGCTGATTATCAA 58.454 34.615 0.00 0.00 0.00 2.57
2125 2433 6.405731 GCATAAACAACAAGGGCTGATTATCA 60.406 38.462 0.00 0.00 0.00 2.15
2126 2434 5.979517 GCATAAACAACAAGGGCTGATTATC 59.020 40.000 0.00 0.00 0.00 1.75
2127 2435 5.421693 TGCATAAACAACAAGGGCTGATTAT 59.578 36.000 0.00 0.00 0.00 1.28
2128 2436 4.769488 TGCATAAACAACAAGGGCTGATTA 59.231 37.500 0.00 0.00 0.00 1.75
2129 2437 3.577848 TGCATAAACAACAAGGGCTGATT 59.422 39.130 0.00 0.00 0.00 2.57
2130 2438 3.056607 GTGCATAAACAACAAGGGCTGAT 60.057 43.478 0.00 0.00 0.00 2.90
2131 2439 2.295909 GTGCATAAACAACAAGGGCTGA 59.704 45.455 0.00 0.00 0.00 4.26
2132 2440 2.297033 AGTGCATAAACAACAAGGGCTG 59.703 45.455 0.00 0.00 0.00 4.85
2133 2441 2.597455 AGTGCATAAACAACAAGGGCT 58.403 42.857 0.00 0.00 0.00 5.19
2134 2442 3.385193 AAGTGCATAAACAACAAGGGC 57.615 42.857 0.00 0.00 0.00 5.19
2135 2443 4.692228 ACAAAGTGCATAAACAACAAGGG 58.308 39.130 0.00 0.00 0.00 3.95
2136 2444 5.591099 AGACAAAGTGCATAAACAACAAGG 58.409 37.500 0.00 0.00 0.00 3.61
2137 2445 6.508404 GCAAGACAAAGTGCATAAACAACAAG 60.508 38.462 0.00 0.00 40.58 3.16
2138 2446 5.290643 GCAAGACAAAGTGCATAAACAACAA 59.709 36.000 0.00 0.00 40.58 2.83
2139 2447 4.803088 GCAAGACAAAGTGCATAAACAACA 59.197 37.500 0.00 0.00 40.58 3.33
2140 2448 4.209080 GGCAAGACAAAGTGCATAAACAAC 59.791 41.667 0.00 0.00 42.74 3.32
2141 2449 4.142071 TGGCAAGACAAAGTGCATAAACAA 60.142 37.500 0.00 0.00 42.74 2.83
2142 2450 3.382865 TGGCAAGACAAAGTGCATAAACA 59.617 39.130 0.00 0.00 42.74 2.83
2143 2451 3.976169 TGGCAAGACAAAGTGCATAAAC 58.024 40.909 0.00 0.00 42.74 2.01
2144 2452 4.558178 CATGGCAAGACAAAGTGCATAAA 58.442 39.130 0.00 0.00 42.74 1.40
2145 2453 3.056678 CCATGGCAAGACAAAGTGCATAA 60.057 43.478 0.00 0.00 42.74 1.90
2146 2454 2.492881 CCATGGCAAGACAAAGTGCATA 59.507 45.455 0.00 0.00 42.74 3.14
2147 2455 1.274167 CCATGGCAAGACAAAGTGCAT 59.726 47.619 0.00 0.00 42.74 3.96
2148 2456 0.675083 CCATGGCAAGACAAAGTGCA 59.325 50.000 0.00 0.00 42.74 4.57
2149 2457 0.675633 ACCATGGCAAGACAAAGTGC 59.324 50.000 13.04 0.00 40.14 4.40
2150 2458 4.789012 ATTACCATGGCAAGACAAAGTG 57.211 40.909 13.04 0.00 0.00 3.16
2151 2459 8.632679 CATATTATTACCATGGCAAGACAAAGT 58.367 33.333 13.04 0.00 0.00 2.66
2152 2460 8.632679 ACATATTATTACCATGGCAAGACAAAG 58.367 33.333 13.04 0.00 0.00 2.77
2153 2461 8.412456 CACATATTATTACCATGGCAAGACAAA 58.588 33.333 13.04 0.00 0.00 2.83
2154 2462 7.777440 TCACATATTATTACCATGGCAAGACAA 59.223 33.333 13.04 1.66 0.00 3.18
2155 2463 7.286313 TCACATATTATTACCATGGCAAGACA 58.714 34.615 13.04 0.00 0.00 3.41
2156 2464 7.744087 TCACATATTATTACCATGGCAAGAC 57.256 36.000 13.04 0.00 0.00 3.01
2157 2465 8.217111 TCTTCACATATTATTACCATGGCAAGA 58.783 33.333 13.04 0.00 0.00 3.02
2158 2466 8.292448 GTCTTCACATATTATTACCATGGCAAG 58.708 37.037 13.04 0.00 0.00 4.01
2159 2467 7.998383 AGTCTTCACATATTATTACCATGGCAA 59.002 33.333 13.04 5.54 0.00 4.52
2160 2468 7.517320 AGTCTTCACATATTATTACCATGGCA 58.483 34.615 13.04 0.00 0.00 4.92
2161 2469 7.986085 AGTCTTCACATATTATTACCATGGC 57.014 36.000 13.04 0.00 0.00 4.40
2162 2470 9.140286 CGTAGTCTTCACATATTATTACCATGG 57.860 37.037 11.19 11.19 0.00 3.66
2163 2471 8.648097 GCGTAGTCTTCACATATTATTACCATG 58.352 37.037 0.00 0.00 0.00 3.66
2164 2472 8.585881 AGCGTAGTCTTCACATATTATTACCAT 58.414 33.333 0.00 0.00 0.00 3.55
2165 2473 7.948357 AGCGTAGTCTTCACATATTATTACCA 58.052 34.615 0.00 0.00 0.00 3.25
2166 2474 9.557338 CTAGCGTAGTCTTCACATATTATTACC 57.443 37.037 0.00 0.00 0.00 2.85
2167 2475 9.063739 GCTAGCGTAGTCTTCACATATTATTAC 57.936 37.037 0.00 0.00 0.00 1.89
2168 2476 8.242053 GGCTAGCGTAGTCTTCACATATTATTA 58.758 37.037 9.00 0.00 0.00 0.98
2169 2477 7.091443 GGCTAGCGTAGTCTTCACATATTATT 58.909 38.462 9.00 0.00 0.00 1.40
2170 2478 6.208797 TGGCTAGCGTAGTCTTCACATATTAT 59.791 38.462 9.00 0.00 0.00 1.28
2171 2479 5.533528 TGGCTAGCGTAGTCTTCACATATTA 59.466 40.000 9.00 0.00 0.00 0.98
2172 2480 4.341235 TGGCTAGCGTAGTCTTCACATATT 59.659 41.667 9.00 0.00 0.00 1.28
2173 2481 3.889538 TGGCTAGCGTAGTCTTCACATAT 59.110 43.478 9.00 0.00 0.00 1.78
2174 2482 3.066342 GTGGCTAGCGTAGTCTTCACATA 59.934 47.826 9.00 0.00 0.00 2.29
2175 2483 2.100197 TGGCTAGCGTAGTCTTCACAT 58.900 47.619 9.00 0.00 0.00 3.21
2176 2484 1.201647 GTGGCTAGCGTAGTCTTCACA 59.798 52.381 9.00 0.00 0.00 3.58
2177 2485 1.469423 GGTGGCTAGCGTAGTCTTCAC 60.469 57.143 9.00 8.20 0.00 3.18
2178 2486 0.815734 GGTGGCTAGCGTAGTCTTCA 59.184 55.000 9.00 0.00 0.00 3.02
2179 2487 1.104630 AGGTGGCTAGCGTAGTCTTC 58.895 55.000 9.00 0.00 0.00 2.87
2180 2488 0.818296 CAGGTGGCTAGCGTAGTCTT 59.182 55.000 9.00 0.00 0.00 3.01
2181 2489 0.323542 ACAGGTGGCTAGCGTAGTCT 60.324 55.000 9.00 0.00 0.00 3.24
2182 2490 0.531200 AACAGGTGGCTAGCGTAGTC 59.469 55.000 9.00 0.00 0.00 2.59
2183 2491 0.246635 CAACAGGTGGCTAGCGTAGT 59.753 55.000 9.00 0.00 0.00 2.73
2184 2492 1.084370 GCAACAGGTGGCTAGCGTAG 61.084 60.000 9.00 0.00 0.00 3.51
2185 2493 1.079405 GCAACAGGTGGCTAGCGTA 60.079 57.895 9.00 0.00 0.00 4.42
2186 2494 2.358737 GCAACAGGTGGCTAGCGT 60.359 61.111 9.00 0.00 0.00 5.07
2187 2495 2.046892 AGCAACAGGTGGCTAGCG 60.047 61.111 9.00 0.00 38.90 4.26
2188 2496 2.694760 GCAGCAACAGGTGGCTAGC 61.695 63.158 6.04 6.04 38.56 3.42
2189 2497 0.250234 TAGCAGCAACAGGTGGCTAG 59.750 55.000 0.05 0.00 38.56 3.42
2190 2498 0.911769 ATAGCAGCAACAGGTGGCTA 59.088 50.000 0.05 0.28 38.56 3.93
2191 2499 0.038744 AATAGCAGCAACAGGTGGCT 59.961 50.000 0.00 0.00 42.06 4.75
2192 2500 1.750193 TAATAGCAGCAACAGGTGGC 58.250 50.000 0.00 0.00 0.00 5.01
2193 2501 2.033801 GCATAATAGCAGCAACAGGTGG 59.966 50.000 0.00 0.00 0.00 4.61
2194 2502 2.947652 AGCATAATAGCAGCAACAGGTG 59.052 45.455 0.00 0.00 36.85 4.00
2195 2503 2.947652 CAGCATAATAGCAGCAACAGGT 59.052 45.455 0.00 0.00 36.85 4.00
2196 2504 2.287427 GCAGCATAATAGCAGCAACAGG 60.287 50.000 0.00 0.00 45.12 4.00
2197 2505 2.996155 GCAGCATAATAGCAGCAACAG 58.004 47.619 0.00 0.00 45.12 3.16
2202 2510 3.769228 GCAGCAGCATAATAGCAGC 57.231 52.632 0.00 0.00 45.99 5.25
2213 2521 4.096081 AGAACAGAAATTAGATGCAGCAGC 59.904 41.667 4.07 1.15 42.57 5.25
2214 2522 5.814764 AGAACAGAAATTAGATGCAGCAG 57.185 39.130 4.07 0.00 0.00 4.24
2215 2523 7.553760 TGATAAGAACAGAAATTAGATGCAGCA 59.446 33.333 4.07 0.00 0.00 4.41
2216 2524 7.854916 GTGATAAGAACAGAAATTAGATGCAGC 59.145 37.037 0.00 0.00 0.00 5.25
2217 2525 9.107177 AGTGATAAGAACAGAAATTAGATGCAG 57.893 33.333 0.00 0.00 0.00 4.41
2218 2526 9.453572 AAGTGATAAGAACAGAAATTAGATGCA 57.546 29.630 0.00 0.00 0.00 3.96
2219 2527 9.928236 GAAGTGATAAGAACAGAAATTAGATGC 57.072 33.333 0.00 0.00 0.00 3.91
2225 2533 9.082313 ACCAATGAAGTGATAAGAACAGAAATT 57.918 29.630 0.00 0.00 0.00 1.82
2226 2534 8.641498 ACCAATGAAGTGATAAGAACAGAAAT 57.359 30.769 0.00 0.00 0.00 2.17
2227 2535 8.463930 AACCAATGAAGTGATAAGAACAGAAA 57.536 30.769 0.00 0.00 0.00 2.52
2228 2536 9.739276 ATAACCAATGAAGTGATAAGAACAGAA 57.261 29.630 0.00 0.00 0.00 3.02
2229 2537 9.739276 AATAACCAATGAAGTGATAAGAACAGA 57.261 29.630 0.00 0.00 0.00 3.41
2230 2538 9.778993 CAATAACCAATGAAGTGATAAGAACAG 57.221 33.333 0.00 0.00 0.00 3.16
2231 2539 9.295825 ACAATAACCAATGAAGTGATAAGAACA 57.704 29.630 0.00 0.00 0.00 3.18
2234 2542 9.739276 AGAACAATAACCAATGAAGTGATAAGA 57.261 29.630 0.00 0.00 0.00 2.10
2235 2543 9.778993 CAGAACAATAACCAATGAAGTGATAAG 57.221 33.333 0.00 0.00 0.00 1.73
2236 2544 8.243426 GCAGAACAATAACCAATGAAGTGATAA 58.757 33.333 0.00 0.00 0.00 1.75
2237 2545 7.392953 TGCAGAACAATAACCAATGAAGTGATA 59.607 33.333 0.00 0.00 0.00 2.15
2238 2546 6.209192 TGCAGAACAATAACCAATGAAGTGAT 59.791 34.615 0.00 0.00 0.00 3.06
2239 2547 5.534278 TGCAGAACAATAACCAATGAAGTGA 59.466 36.000 0.00 0.00 0.00 3.41
2240 2548 5.771469 TGCAGAACAATAACCAATGAAGTG 58.229 37.500 0.00 0.00 0.00 3.16
2241 2549 6.594788 ATGCAGAACAATAACCAATGAAGT 57.405 33.333 0.00 0.00 0.00 3.01
2242 2550 7.274904 CAGAATGCAGAACAATAACCAATGAAG 59.725 37.037 0.00 0.00 0.00 3.02
2243 2551 7.092079 CAGAATGCAGAACAATAACCAATGAA 58.908 34.615 0.00 0.00 0.00 2.57
2244 2552 6.350361 CCAGAATGCAGAACAATAACCAATGA 60.350 38.462 0.00 0.00 31.97 2.57
2245 2553 5.808540 CCAGAATGCAGAACAATAACCAATG 59.191 40.000 0.00 0.00 31.97 2.82
2246 2554 5.105228 CCCAGAATGCAGAACAATAACCAAT 60.105 40.000 0.00 0.00 31.97 3.16
2247 2555 4.220382 CCCAGAATGCAGAACAATAACCAA 59.780 41.667 0.00 0.00 31.97 3.67
2248 2556 3.763360 CCCAGAATGCAGAACAATAACCA 59.237 43.478 0.00 0.00 31.97 3.67
2281 2589 1.598882 TCACATAAACGCTGCCAACA 58.401 45.000 0.00 0.00 0.00 3.33
2282 2590 2.697431 TTCACATAAACGCTGCCAAC 57.303 45.000 0.00 0.00 0.00 3.77
2283 2591 3.932545 ATTTCACATAAACGCTGCCAA 57.067 38.095 0.00 0.00 0.00 4.52
2284 2592 3.573598 CAATTTCACATAAACGCTGCCA 58.426 40.909 0.00 0.00 0.00 4.92
2285 2593 2.345341 GCAATTTCACATAAACGCTGCC 59.655 45.455 0.00 0.00 0.00 4.85
2322 2630 4.649674 TCAATACTCACCATGTCCTCTACC 59.350 45.833 0.00 0.00 0.00 3.18
2335 2643 8.338259 GTGATCAACCAATATGTCAATACTCAC 58.662 37.037 0.00 0.00 0.00 3.51
2385 2699 6.436261 TCATGCTACTAGTCTATGTTTACGC 58.564 40.000 0.00 0.00 0.00 4.42
2386 2700 8.851960 TTTCATGCTACTAGTCTATGTTTACG 57.148 34.615 0.00 0.00 0.00 3.18
2404 2741 5.886960 ATTCAGTAACTGTCCTTTCATGC 57.113 39.130 0.00 0.00 32.61 4.06
2407 2744 7.284074 TGGTAAATTCAGTAACTGTCCTTTCA 58.716 34.615 0.00 0.00 32.61 2.69
2439 2776 5.938279 AGTTGCCACTGATTATCATCATCT 58.062 37.500 0.00 0.00 38.81 2.90
2470 2807 4.722535 TCTGCTTCGCCTCCCCCT 62.723 66.667 0.00 0.00 0.00 4.79
2471 2808 3.049080 ATTCTGCTTCGCCTCCCCC 62.049 63.158 0.00 0.00 0.00 5.40
2498 2835 4.818546 ACAATCAGAGAACACAAGGAACAG 59.181 41.667 0.00 0.00 0.00 3.16
2501 2838 5.066375 CACAACAATCAGAGAACACAAGGAA 59.934 40.000 0.00 0.00 0.00 3.36
2514 2851 0.110056 GCTGACGGCACAACAATCAG 60.110 55.000 0.00 0.00 41.35 2.90
2532 2869 6.896088 CGCAATTTTATCACATAAAAAGCTGC 59.104 34.615 17.88 16.68 44.91 5.25
2535 2872 7.062839 TCACCGCAATTTTATCACATAAAAAGC 59.937 33.333 13.88 13.88 44.91 3.51
2539 2876 7.490725 CCAATCACCGCAATTTTATCACATAAA 59.509 33.333 0.00 0.00 33.20 1.40
2543 2880 4.460731 TCCAATCACCGCAATTTTATCACA 59.539 37.500 0.00 0.00 0.00 3.58
2549 2886 5.868801 CACTATTTCCAATCACCGCAATTTT 59.131 36.000 0.00 0.00 0.00 1.82
2557 2894 4.646492 AGCATTCCACTATTTCCAATCACC 59.354 41.667 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.