Multiple sequence alignment - TraesCS1D01G374000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G374000 chr1D 100.000 4239 0 0 1 4239 451630435 451626197 0.000000e+00 7829.0
1 TraesCS1D01G374000 chr1D 87.973 291 26 7 2579 2863 451532505 451532218 6.790000e-88 335.0
2 TraesCS1D01G374000 chr1D 87.391 230 20 4 3128 3349 451527061 451526833 5.440000e-64 255.0
3 TraesCS1D01G374000 chr1D 86.154 65 9 0 2231 2295 451261188 451261124 2.110000e-08 71.3
4 TraesCS1D01G374000 chr1A 98.165 1744 25 3 1812 3548 546219734 546217991 0.000000e+00 3037.0
5 TraesCS1D01G374000 chr1A 86.701 579 43 14 3476 4046 546218020 546217468 2.800000e-171 612.0
6 TraesCS1D01G374000 chr1A 93.814 97 6 0 2860 2956 546214173 546214077 3.420000e-31 147.0
7 TraesCS1D01G374000 chr1B 93.431 1644 79 16 1916 3546 621268923 621270550 0.000000e+00 2410.0
8 TraesCS1D01G374000 chr1B 90.335 1283 79 19 1 1272 621266723 621267971 0.000000e+00 1640.0
9 TraesCS1D01G374000 chr1B 89.621 501 44 5 1423 1919 621268232 621268728 7.730000e-177 630.0
10 TraesCS1D01G374000 chr1B 86.422 464 47 10 3477 3929 621270524 621270982 1.060000e-135 494.0
11 TraesCS1D01G374000 chr1B 83.113 379 42 11 3128 3490 620902267 620901895 4.090000e-85 326.0
12 TraesCS1D01G374000 chr1B 84.437 302 40 4 6 301 14936581 14936281 1.490000e-74 291.0
13 TraesCS1D01G374000 chr1B 87.500 208 26 0 1502 1709 621267979 621268186 1.520000e-59 241.0
14 TraesCS1D01G374000 chr1B 81.588 277 37 7 3223 3490 620553530 620553259 2.570000e-52 217.0
15 TraesCS1D01G374000 chr1B 89.820 167 17 0 1307 1473 621268305 621268471 9.230000e-52 215.0
16 TraesCS1D01G374000 chr1B 89.697 165 15 2 1314 1477 621267979 621268142 4.290000e-50 209.0
17 TraesCS1D01G374000 chr1B 86.432 199 12 4 2777 2961 620128603 620128800 2.000000e-48 204.0
18 TraesCS1D01G374000 chr1B 93.130 131 8 1 2831 2961 620902529 620902400 1.560000e-44 191.0
19 TraesCS1D01G374000 chr1B 86.709 158 17 3 2584 2738 620927556 620927400 5.630000e-39 172.0
20 TraesCS1D01G374000 chr1B 90.476 84 6 2 4158 4239 620787382 620787299 4.480000e-20 110.0
21 TraesCS1D01G374000 chr1B 97.561 41 1 0 2919 2959 620700607 620700567 2.110000e-08 71.3
22 TraesCS1D01G374000 chr5B 86.645 307 34 4 1 301 142001711 142001406 2.440000e-87 333.0
23 TraesCS1D01G374000 chr5D 91.509 212 16 2 1935 2145 529567208 529567418 1.490000e-74 291.0
24 TraesCS1D01G374000 chr5D 91.038 212 17 2 1935 2145 529565085 529565295 6.940000e-73 285.0
25 TraesCS1D01G374000 chr5D 91.038 212 17 2 1935 2145 529566146 529566356 6.940000e-73 285.0
26 TraesCS1D01G374000 chr5D 86.747 166 19 2 1747 1912 529557148 529557310 9.360000e-42 182.0
27 TraesCS1D01G374000 chr2A 85.542 166 21 2 1747 1912 528098383 528098545 2.030000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G374000 chr1D 451626197 451630435 4238 True 7829.000000 7829 100.000000 1 4239 1 chr1D.!!$R4 4238
1 TraesCS1D01G374000 chr1A 546214077 546219734 5657 True 1265.333333 3037 92.893333 1812 4046 3 chr1A.!!$R1 2234
2 TraesCS1D01G374000 chr1B 621266723 621270982 4259 False 834.142857 2410 89.546571 1 3929 7 chr1B.!!$F2 3928
3 TraesCS1D01G374000 chr1B 620901895 620902529 634 True 258.500000 326 88.121500 2831 3490 2 chr1B.!!$R6 659
4 TraesCS1D01G374000 chr5D 529565085 529567418 2333 False 287.000000 291 91.195000 1935 2145 3 chr5D.!!$F2 210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 758 0.10741 TCCCCAAATGTTCCGATCGG 60.107 55.0 28.62 28.62 0.0 4.18 F
1483 1647 0.03254 ACGGTTACAACACGAGTCCC 59.967 55.0 9.08 0.00 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1861 0.394899 GCACTTCTAGGCCAGCCAAT 60.395 55.0 12.03 0.0 38.92 3.16 R
3274 4751 1.882912 TGAATCAAGCAACAGACGCT 58.117 45.0 0.00 0.0 42.98 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 1.229464 AGCAGCCTCCTCCTTGTCT 60.229 57.895 0.00 0.00 0.00 3.41
482 483 4.077184 TCGTAGGCCTTGGCGTGG 62.077 66.667 12.58 8.56 0.00 4.94
604 608 3.607370 AAACCCTCGCCGCTTCCTC 62.607 63.158 0.00 0.00 0.00 3.71
613 617 4.806339 CGCTTCCTCCCTCCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
614 618 2.770475 GCTTCCTCCCTCCCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
618 622 1.595058 TTCCTCCCTCCCCCTCTCTC 61.595 65.000 0.00 0.00 0.00 3.20
619 623 2.018086 CCTCCCTCCCCCTCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
620 624 1.541672 CTCCCTCCCCCTCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
623 627 0.998945 CCCTCCCCCTCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
632 636 3.181461 CCCTCTCTCTCTCTCTCTGTCTC 60.181 56.522 0.00 0.00 0.00 3.36
634 638 4.442612 CCTCTCTCTCTCTCTCTGTCTCTG 60.443 54.167 0.00 0.00 0.00 3.35
639 643 5.899547 TCTCTCTCTCTCTGTCTCTGTCTAT 59.100 44.000 0.00 0.00 0.00 1.98
679 683 2.503061 CTGGATGCGAGGGTGGAG 59.497 66.667 0.00 0.00 0.00 3.86
688 692 2.043450 AGGGTGGAGAGGAGCTCG 60.043 66.667 7.83 0.00 44.91 5.03
696 700 0.535102 GAGAGGAGCTCGAGAGGGAG 60.535 65.000 18.75 0.00 35.36 4.30
697 701 1.528309 GAGGAGCTCGAGAGGGAGG 60.528 68.421 18.75 0.00 34.56 4.30
698 702 2.520741 GGAGCTCGAGAGGGAGGG 60.521 72.222 18.75 0.00 34.56 4.30
699 703 3.223589 GAGCTCGAGAGGGAGGGC 61.224 72.222 18.75 0.00 34.56 5.19
700 704 4.851214 AGCTCGAGAGGGAGGGCC 62.851 72.222 18.75 0.00 34.56 5.80
742 746 1.034838 CCGGAAATGCGATCCCCAAA 61.035 55.000 0.00 0.00 33.13 3.28
745 749 1.756538 GGAAATGCGATCCCCAAATGT 59.243 47.619 0.00 0.00 0.00 2.71
754 758 0.107410 TCCCCAAATGTTCCGATCGG 60.107 55.000 28.62 28.62 0.00 4.18
774 778 3.220447 CGGTTGAGAAACGCCCTAA 57.780 52.632 0.00 0.00 33.38 2.69
826 830 4.994756 AAAGCCAGGGTTGCGGGG 62.995 66.667 4.15 0.00 0.00 5.73
856 862 2.851263 TGATAGAAGGGTTGCGTTGT 57.149 45.000 0.00 0.00 0.00 3.32
882 889 1.304617 GGGGAAAAGCAGAGGAGGG 59.695 63.158 0.00 0.00 0.00 4.30
883 890 1.379176 GGGAAAAGCAGAGGAGGGC 60.379 63.158 0.00 0.00 0.00 5.19
884 891 1.746991 GGAAAAGCAGAGGAGGGCG 60.747 63.158 0.00 0.00 34.54 6.13
885 892 1.746991 GAAAAGCAGAGGAGGGCGG 60.747 63.158 0.00 0.00 34.54 6.13
900 907 4.161295 CGGCTCGGCTGGATTCCA 62.161 66.667 5.05 5.05 0.00 3.53
901 908 2.512896 GGCTCGGCTGGATTCCAT 59.487 61.111 5.70 0.00 30.82 3.41
903 910 1.449353 GCTCGGCTGGATTCCATCT 59.551 57.895 5.70 0.00 30.82 2.90
930 937 2.694616 GCCACTCCCCACCCCATA 60.695 66.667 0.00 0.00 0.00 2.74
933 940 2.368329 ACTCCCCACCCCATAGCC 60.368 66.667 0.00 0.00 0.00 3.93
934 941 3.560251 CTCCCCACCCCATAGCCG 61.560 72.222 0.00 0.00 0.00 5.52
1039 1057 1.813513 CTTCCTGTGATTCGTTGGCT 58.186 50.000 0.00 0.00 0.00 4.75
1045 1063 0.238289 GTGATTCGTTGGCTGTGTGG 59.762 55.000 0.00 0.00 0.00 4.17
1095 1114 9.871175 TTAAATCTTAGGGTTCTTAGGTGTTTT 57.129 29.630 0.00 0.00 0.00 2.43
1114 1133 1.671054 CGGCGATCTGTGGGTTGTT 60.671 57.895 0.00 0.00 0.00 2.83
1123 1142 1.405105 CTGTGGGTTGTTGACTGGTTG 59.595 52.381 0.00 0.00 0.00 3.77
1124 1143 0.744281 GTGGGTTGTTGACTGGTTGG 59.256 55.000 0.00 0.00 0.00 3.77
1127 1146 0.668535 GGTTGTTGACTGGTTGGCTC 59.331 55.000 0.00 0.00 0.00 4.70
1151 1170 1.026718 GGCCTTGTATGCTGCGTCTT 61.027 55.000 0.00 0.00 0.00 3.01
1154 1173 1.675714 CCTTGTATGCTGCGTCTTCCA 60.676 52.381 0.00 0.00 0.00 3.53
1196 1215 2.438434 GATGTCTTGGCCGGTGGG 60.438 66.667 1.90 0.00 0.00 4.61
1207 1226 4.980805 CGGTGGGTGGTGTGTCGG 62.981 72.222 0.00 0.00 0.00 4.79
1215 1234 1.302431 TGGTGTGTCGGGCAGATTG 60.302 57.895 0.00 0.00 0.00 2.67
1246 1265 1.450025 GTTTTGGTAGGCCGAGGAAG 58.550 55.000 0.00 0.00 37.67 3.46
1272 1291 2.494471 TGTAGTACGTATGGCAAGTGCT 59.506 45.455 13.78 13.78 41.70 4.40
1274 1293 0.921347 GTACGTATGGCAAGTGCTCG 59.079 55.000 0.00 6.28 41.70 5.03
1275 1294 0.804544 TACGTATGGCAAGTGCTCGC 60.805 55.000 2.85 0.00 41.70 5.03
1276 1295 2.703409 GTATGGCAAGTGCTCGCG 59.297 61.111 0.00 0.00 41.70 5.87
1278 1297 3.309436 TATGGCAAGTGCTCGCGGT 62.309 57.895 6.13 0.00 41.70 5.68
1279 1298 1.950973 TATGGCAAGTGCTCGCGGTA 61.951 55.000 6.13 0.00 41.70 4.02
1280 1299 2.511600 GGCAAGTGCTCGCGGTAT 60.512 61.111 6.13 0.00 41.70 2.73
1281 1300 1.227147 GGCAAGTGCTCGCGGTATA 60.227 57.895 6.13 0.00 41.70 1.47
1282 1301 1.215655 GGCAAGTGCTCGCGGTATAG 61.216 60.000 6.13 0.00 41.70 1.31
1283 1302 1.215655 GCAAGTGCTCGCGGTATAGG 61.216 60.000 6.13 0.00 38.21 2.57
1284 1303 1.067582 AAGTGCTCGCGGTATAGGC 59.932 57.895 6.13 2.26 0.00 3.93
1285 1304 1.672854 AAGTGCTCGCGGTATAGGCA 61.673 55.000 6.13 5.02 0.00 4.75
1286 1305 1.661821 GTGCTCGCGGTATAGGCAG 60.662 63.158 6.13 0.00 33.47 4.85
1287 1306 1.826487 TGCTCGCGGTATAGGCAGA 60.826 57.895 6.13 0.00 0.00 4.26
1288 1307 1.362717 GCTCGCGGTATAGGCAGAA 59.637 57.895 6.13 0.00 0.00 3.02
1289 1308 0.940047 GCTCGCGGTATAGGCAGAAC 60.940 60.000 6.13 0.00 0.00 3.01
1290 1309 0.660595 CTCGCGGTATAGGCAGAACG 60.661 60.000 6.13 0.00 0.00 3.95
1291 1310 1.660575 CGCGGTATAGGCAGAACGG 60.661 63.158 0.00 0.00 0.00 4.44
1292 1311 1.440476 GCGGTATAGGCAGAACGGT 59.560 57.895 0.00 0.00 0.00 4.83
1293 1312 0.874607 GCGGTATAGGCAGAACGGTG 60.875 60.000 0.00 0.00 0.00 4.94
1294 1313 0.249322 CGGTATAGGCAGAACGGTGG 60.249 60.000 0.00 0.00 0.00 4.61
1295 1314 1.117150 GGTATAGGCAGAACGGTGGA 58.883 55.000 0.00 0.00 0.00 4.02
1296 1315 1.692519 GGTATAGGCAGAACGGTGGAT 59.307 52.381 0.00 0.00 0.00 3.41
1297 1316 2.895404 GGTATAGGCAGAACGGTGGATA 59.105 50.000 0.00 0.00 0.00 2.59
1298 1317 3.514309 GGTATAGGCAGAACGGTGGATAT 59.486 47.826 0.00 0.00 0.00 1.63
1299 1318 4.708421 GGTATAGGCAGAACGGTGGATATA 59.292 45.833 0.00 0.00 0.00 0.86
1300 1319 5.363005 GGTATAGGCAGAACGGTGGATATAT 59.637 44.000 0.00 0.00 0.00 0.86
1301 1320 3.963428 AGGCAGAACGGTGGATATATC 57.037 47.619 3.96 3.96 0.00 1.63
1302 1321 3.511477 AGGCAGAACGGTGGATATATCT 58.489 45.455 12.42 0.00 0.00 1.98
1303 1322 3.259374 AGGCAGAACGGTGGATATATCTG 59.741 47.826 12.42 2.41 37.83 2.90
1304 1323 3.258372 GGCAGAACGGTGGATATATCTGA 59.742 47.826 12.42 0.00 37.14 3.27
1305 1324 4.489810 GCAGAACGGTGGATATATCTGAG 58.510 47.826 12.42 4.95 37.14 3.35
1306 1325 4.489810 CAGAACGGTGGATATATCTGAGC 58.510 47.826 12.42 8.18 37.14 4.26
1307 1326 4.219507 CAGAACGGTGGATATATCTGAGCT 59.780 45.833 12.42 0.00 37.14 4.09
1308 1327 4.461081 AGAACGGTGGATATATCTGAGCTC 59.539 45.833 6.82 6.82 0.00 4.09
1309 1328 3.093057 ACGGTGGATATATCTGAGCTCC 58.907 50.000 12.15 5.47 0.00 4.70
1310 1329 3.245443 ACGGTGGATATATCTGAGCTCCT 60.245 47.826 12.15 0.00 0.00 3.69
1311 1330 3.130164 CGGTGGATATATCTGAGCTCCTG 59.870 52.174 12.15 4.27 0.00 3.86
1312 1331 4.093011 GGTGGATATATCTGAGCTCCTGT 58.907 47.826 12.15 0.00 0.00 4.00
1350 1369 3.024547 CCGATTAGGAAGTGAGTGAGGA 58.975 50.000 0.00 0.00 45.00 3.71
1353 1372 1.853963 TAGGAAGTGAGTGAGGAGCC 58.146 55.000 0.00 0.00 0.00 4.70
1358 1377 0.827925 AGTGAGTGAGGAGCCGACAA 60.828 55.000 0.00 0.00 0.00 3.18
1372 1391 3.284449 ACAAGGGTTTGTCGGCGC 61.284 61.111 0.00 0.00 44.00 6.53
1381 1400 0.179210 TTTGTCGGCGCGCTAATTTC 60.179 50.000 32.29 12.20 0.00 2.17
1396 1415 1.849097 ATTTCGGCGTCGAGTTATCC 58.151 50.000 13.59 0.00 46.75 2.59
1397 1416 0.527113 TTTCGGCGTCGAGTTATCCA 59.473 50.000 13.59 0.00 46.75 3.41
1420 1439 1.066929 GGGGCCATACTTGTTTGCTTG 60.067 52.381 4.39 0.00 0.00 4.01
1421 1440 1.618343 GGGCCATACTTGTTTGCTTGT 59.382 47.619 4.39 0.00 0.00 3.16
1422 1441 2.352715 GGGCCATACTTGTTTGCTTGTC 60.353 50.000 4.39 0.00 0.00 3.18
1423 1442 2.295909 GGCCATACTTGTTTGCTTGTCA 59.704 45.455 0.00 0.00 0.00 3.58
1465 1629 1.471287 GTGAAGGGGCGGTAAATTGAC 59.529 52.381 0.00 0.00 0.00 3.18
1473 1637 2.483491 GGCGGTAAATTGACGGTTACAA 59.517 45.455 2.71 0.00 32.83 2.41
1476 1640 4.456914 CGGTAAATTGACGGTTACAACAC 58.543 43.478 0.00 0.00 32.83 3.32
1479 1643 4.461992 AAATTGACGGTTACAACACGAG 57.538 40.909 9.08 0.00 0.00 4.18
1483 1647 0.032540 ACGGTTACAACACGAGTCCC 59.967 55.000 9.08 0.00 0.00 4.46
1516 1680 3.754965 TCCTGTGATTTTGCTTGCTACT 58.245 40.909 0.00 0.00 0.00 2.57
1518 1682 4.216257 TCCTGTGATTTTGCTTGCTACTTC 59.784 41.667 0.00 0.00 0.00 3.01
1546 1710 3.006967 GGAAGTGAGTAAGGAGCAGACAA 59.993 47.826 0.00 0.00 0.00 3.18
1549 1713 2.563179 GTGAGTAAGGAGCAGACAAGGA 59.437 50.000 0.00 0.00 0.00 3.36
1569 1733 4.887071 AGGATTTGTCGGCATGCTAATTTA 59.113 37.500 18.92 0.00 0.00 1.40
1573 1737 1.946768 GTCGGCATGCTAATTTAGGCA 59.053 47.619 18.92 4.68 42.80 4.75
1581 1745 5.689068 GCATGCTAATTTAGGCATTGAGTTC 59.311 40.000 11.37 0.00 45.41 3.01
1633 1797 3.293262 GCGTGTATTTTTGTCAAGCGAA 58.707 40.909 0.00 0.00 0.00 4.70
1657 1821 1.141665 GGGCGGCAAATTGATGGTC 59.858 57.895 12.47 0.00 0.00 4.02
1663 1827 1.273048 GGCAAATTGATGGTCACAGCA 59.727 47.619 0.00 0.00 42.03 4.41
1672 1836 2.281761 GTCACAGCACCACCTGGG 60.282 66.667 0.00 0.00 44.81 4.45
1673 1837 2.447572 TCACAGCACCACCTGGGA 60.448 61.111 0.00 0.00 42.69 4.37
1674 1838 2.281761 CACAGCACCACCTGGGAC 60.282 66.667 0.00 0.00 38.54 4.46
1686 1850 0.954452 CCTGGGACTGCTTTGTGTTC 59.046 55.000 0.00 0.00 0.00 3.18
1697 1861 2.383855 CTTTGTGTTCCTGGAACCCAA 58.616 47.619 31.00 28.77 41.35 4.12
1710 1874 0.324645 AACCCAATTGGCTGGCCTAG 60.325 55.000 19.75 5.28 37.83 3.02
1716 1880 0.394899 ATTGGCTGGCCTAGAAGTGC 60.395 55.000 13.05 0.00 36.94 4.40
1717 1881 1.778017 TTGGCTGGCCTAGAAGTGCA 61.778 55.000 13.05 0.00 36.94 4.57
1719 1883 0.817229 GGCTGGCCTAGAAGTGCATC 60.817 60.000 3.32 0.00 0.00 3.91
1732 1898 3.089788 TGCATCGCAGCATCTTGAT 57.910 47.368 0.00 0.00 40.11 2.57
1735 1901 1.334779 GCATCGCAGCATCTTGATTCC 60.335 52.381 0.00 0.00 0.00 3.01
1745 1911 1.522668 TCTTGATTCCGGCAGTGTTG 58.477 50.000 0.00 0.00 0.00 3.33
1775 1941 1.204704 CCAGTGGCACTTCGTCTGATA 59.795 52.381 19.43 0.00 0.00 2.15
1784 1950 3.177838 CACTTCGTCTGATAATACACGCG 59.822 47.826 3.53 3.53 0.00 6.01
1797 1963 5.907197 AATACACGCGGATTTCTTCATAG 57.093 39.130 12.47 0.00 0.00 2.23
1829 1995 6.512741 GCTCTTCAATTTACTGTTTTCGGACA 60.513 38.462 0.00 0.00 0.00 4.02
2073 3501 5.123344 GGTAAGTTACTTAAGTGCATGGTGG 59.877 44.000 18.56 0.00 0.00 4.61
2622 4055 0.394352 ACGCCAGGCTGGGAAATAAG 60.394 55.000 33.43 7.21 38.19 1.73
2971 4404 0.530744 AGTGACGGTGCGTACATCAT 59.469 50.000 11.84 1.47 41.37 2.45
3108 4541 6.148480 AGCTTCATTAGAATTCCATATCGTGC 59.852 38.462 0.65 0.00 32.31 5.34
3192 4663 0.613260 TGCCGTCCATGCTAACTCTT 59.387 50.000 0.00 0.00 0.00 2.85
3273 4750 1.134788 GTACTAGCGAATGGGTGCAGT 60.135 52.381 0.00 0.00 0.00 4.40
3274 4751 1.191535 ACTAGCGAATGGGTGCAGTA 58.808 50.000 0.00 0.00 0.00 2.74
3512 5041 3.758755 TGTGATGTCTGTCTCAGCTTT 57.241 42.857 0.00 0.00 0.00 3.51
3547 5076 0.883153 TGTGCAATGTGATGTCTGCC 59.117 50.000 0.00 0.00 33.78 4.85
3581 5114 0.038599 TGGTCCTACTACGCCTGTGA 59.961 55.000 0.00 0.00 0.00 3.58
3628 5161 5.817816 GCTACTACACTAAGTGGATTGCATT 59.182 40.000 0.00 0.00 37.94 3.56
3647 5180 5.182950 TGCATTATTTTCCGTCAGTGACAAT 59.817 36.000 22.66 15.84 32.09 2.71
3669 5202 8.079203 ACAATGTGAGATATCGTTGATAGAGTC 58.921 37.037 0.00 0.00 35.39 3.36
3670 5203 7.751768 ATGTGAGATATCGTTGATAGAGTCA 57.248 36.000 0.00 0.00 34.25 3.41
3671 5204 7.568199 TGTGAGATATCGTTGATAGAGTCAA 57.432 36.000 0.00 0.00 44.36 3.18
3672 5205 7.643579 TGTGAGATATCGTTGATAGAGTCAAG 58.356 38.462 0.00 0.00 46.99 3.02
3675 5210 8.346300 TGAGATATCGTTGATAGAGTCAAGTTC 58.654 37.037 0.00 0.00 46.99 3.01
3679 5214 3.367087 CGTTGATAGAGTCAAGTTCCCGT 60.367 47.826 0.00 0.00 46.99 5.28
3703 5238 2.030946 GCATCACTCCTGTTTATGCGTC 59.969 50.000 0.00 0.00 35.01 5.19
3707 5242 3.449377 TCACTCCTGTTTATGCGTCCATA 59.551 43.478 0.00 0.00 32.85 2.74
3720 5255 2.355108 GCGTCCATATATCCACATGCCT 60.355 50.000 0.00 0.00 0.00 4.75
3728 5263 6.885918 CCATATATCCACATGCCTTGTATTGA 59.114 38.462 0.00 0.00 36.57 2.57
3733 5268 3.511146 CCACATGCCTTGTATTGACCTTT 59.489 43.478 0.00 0.00 36.57 3.11
3738 5273 7.120579 CACATGCCTTGTATTGACCTTTTAGTA 59.879 37.037 0.00 0.00 36.57 1.82
3742 5277 8.519526 TGCCTTGTATTGACCTTTTAGTATTTG 58.480 33.333 0.00 0.00 0.00 2.32
3784 5319 6.691508 AGGAAAATAAGTGCAATCCAAGAAC 58.308 36.000 0.00 0.00 0.00 3.01
3787 5324 6.899393 AAATAAGTGCAATCCAAGAACAGA 57.101 33.333 0.00 0.00 0.00 3.41
3794 5331 3.243839 GCAATCCAAGAACAGAAAAGGCA 60.244 43.478 0.00 0.00 0.00 4.75
3798 5335 3.137544 TCCAAGAACAGAAAAGGCAGGTA 59.862 43.478 0.00 0.00 0.00 3.08
3800 5337 3.425162 AGAACAGAAAAGGCAGGTAGG 57.575 47.619 0.00 0.00 0.00 3.18
3868 5406 3.645975 CAACGTCCTTTGCGCCGT 61.646 61.111 4.18 2.43 34.56 5.68
3936 5474 4.469657 ACTGCCAAAAGTTTGAGTATCCA 58.530 39.130 5.34 0.00 40.55 3.41
3960 5498 7.044798 CAGGGAATTTGAAACCAAAAACACTA 58.955 34.615 0.00 0.00 37.12 2.74
3961 5499 7.714813 CAGGGAATTTGAAACCAAAAACACTAT 59.285 33.333 0.00 0.00 37.12 2.12
3962 5500 7.714813 AGGGAATTTGAAACCAAAAACACTATG 59.285 33.333 0.00 0.00 37.12 2.23
3963 5501 7.713073 GGGAATTTGAAACCAAAAACACTATGA 59.287 33.333 0.00 0.00 37.12 2.15
3964 5502 9.271828 GGAATTTGAAACCAAAAACACTATGAT 57.728 29.630 0.00 0.00 37.12 2.45
3967 5505 7.475771 TTGAAACCAAAAACACTATGATTGC 57.524 32.000 0.00 0.00 0.00 3.56
3968 5506 6.577103 TGAAACCAAAAACACTATGATTGCA 58.423 32.000 0.00 0.00 0.00 4.08
3969 5507 7.044181 TGAAACCAAAAACACTATGATTGCAA 58.956 30.769 0.00 0.00 0.00 4.08
3970 5508 6.843069 AACCAAAAACACTATGATTGCAAC 57.157 33.333 0.00 0.00 0.00 4.17
3971 5509 5.911752 ACCAAAAACACTATGATTGCAACA 58.088 33.333 0.00 2.38 0.00 3.33
3972 5510 5.752955 ACCAAAAACACTATGATTGCAACAC 59.247 36.000 0.00 0.00 0.00 3.32
3973 5511 5.984926 CCAAAAACACTATGATTGCAACACT 59.015 36.000 0.00 0.00 0.00 3.55
3974 5512 6.144402 CCAAAAACACTATGATTGCAACACTC 59.856 38.462 0.00 0.00 0.00 3.51
3979 5517 5.477984 ACACTATGATTGCAACACTCCAATT 59.522 36.000 0.00 0.00 32.20 2.32
3981 5519 3.940209 TGATTGCAACACTCCAATTCC 57.060 42.857 0.00 0.00 32.20 3.01
3987 5525 1.069022 CAACACTCCAATTCCAGCACG 60.069 52.381 0.00 0.00 0.00 5.34
4009 5547 6.952083 CACGATTCTTGCGATATGATAACATG 59.048 38.462 0.00 0.00 37.87 3.21
4046 5584 4.281941 CCAGCATCTAACTATAGAGCACCA 59.718 45.833 6.78 0.00 41.36 4.17
4048 5586 4.895889 AGCATCTAACTATAGAGCACCACA 59.104 41.667 6.78 0.00 41.36 4.17
4049 5587 5.363868 AGCATCTAACTATAGAGCACCACAA 59.636 40.000 6.78 0.00 41.36 3.33
4051 5589 5.854010 TCTAACTATAGAGCACCACAAGG 57.146 43.478 6.78 0.00 35.55 3.61
4052 5590 5.516044 TCTAACTATAGAGCACCACAAGGA 58.484 41.667 6.78 0.00 34.35 3.36
4053 5591 4.744795 AACTATAGAGCACCACAAGGAG 57.255 45.455 6.78 0.00 38.69 3.69
4059 5597 3.348236 CACCACAAGGAGCAGCAC 58.652 61.111 0.00 0.00 38.69 4.40
4061 5599 1.526917 ACCACAAGGAGCAGCACAC 60.527 57.895 0.00 0.00 38.69 3.82
4062 5600 2.263741 CCACAAGGAGCAGCACACC 61.264 63.158 0.00 0.00 36.89 4.16
4065 5603 0.395586 ACAAGGAGCAGCACACCAAA 60.396 50.000 0.00 0.00 0.00 3.28
4066 5604 0.963962 CAAGGAGCAGCACACCAAAT 59.036 50.000 0.00 0.00 0.00 2.32
4067 5605 0.963962 AAGGAGCAGCACACCAAATG 59.036 50.000 0.00 0.00 0.00 2.32
4068 5606 0.178981 AGGAGCAGCACACCAAATGT 60.179 50.000 0.00 0.00 44.81 2.71
4079 5617 3.155093 CACCAAATGTGCATAGAAGGC 57.845 47.619 0.00 0.00 38.34 4.35
4080 5618 2.492881 CACCAAATGTGCATAGAAGGCA 59.507 45.455 0.00 0.00 38.34 4.75
4081 5619 3.131577 CACCAAATGTGCATAGAAGGCAT 59.868 43.478 0.00 0.00 44.11 4.40
4082 5620 3.131577 ACCAAATGTGCATAGAAGGCATG 59.868 43.478 0.00 0.00 44.11 4.06
4088 5626 1.325355 GCATAGAAGGCATGCATGGT 58.675 50.000 27.34 5.95 46.47 3.55
4089 5627 1.684983 GCATAGAAGGCATGCATGGTT 59.315 47.619 27.34 6.78 46.47 3.67
4091 5629 3.797865 GCATAGAAGGCATGCATGGTTTC 60.798 47.826 27.34 10.91 46.47 2.78
4092 5630 2.226962 AGAAGGCATGCATGGTTTCT 57.773 45.000 27.34 15.57 0.00 2.52
4094 5632 2.494870 AGAAGGCATGCATGGTTTCTTC 59.505 45.455 27.34 19.09 0.00 2.87
4095 5633 1.927487 AGGCATGCATGGTTTCTTCA 58.073 45.000 27.34 0.00 0.00 3.02
4097 5635 1.547372 GGCATGCATGGTTTCTTCAGT 59.453 47.619 27.34 0.00 0.00 3.41
4098 5636 2.028748 GGCATGCATGGTTTCTTCAGTT 60.029 45.455 27.34 0.00 0.00 3.16
4099 5637 2.991190 GCATGCATGGTTTCTTCAGTTG 59.009 45.455 27.34 0.00 0.00 3.16
4100 5638 3.553508 GCATGCATGGTTTCTTCAGTTGT 60.554 43.478 27.34 0.00 0.00 3.32
4101 5639 3.988379 TGCATGGTTTCTTCAGTTGTC 57.012 42.857 0.00 0.00 0.00 3.18
4102 5640 3.286353 TGCATGGTTTCTTCAGTTGTCA 58.714 40.909 0.00 0.00 0.00 3.58
4104 5642 3.565482 GCATGGTTTCTTCAGTTGTCAGA 59.435 43.478 0.00 0.00 0.00 3.27
4105 5643 4.217118 GCATGGTTTCTTCAGTTGTCAGAT 59.783 41.667 0.00 0.00 0.00 2.90
4106 5644 5.412594 GCATGGTTTCTTCAGTTGTCAGATA 59.587 40.000 0.00 0.00 0.00 1.98
4107 5645 6.402983 GCATGGTTTCTTCAGTTGTCAGATAG 60.403 42.308 0.00 0.00 0.00 2.08
4108 5646 5.551233 TGGTTTCTTCAGTTGTCAGATAGG 58.449 41.667 0.00 0.00 0.00 2.57
4109 5647 4.393371 GGTTTCTTCAGTTGTCAGATAGGC 59.607 45.833 0.00 0.00 0.00 3.93
4110 5648 4.890158 TTCTTCAGTTGTCAGATAGGCA 57.110 40.909 0.00 0.00 0.00 4.75
4112 5650 5.426689 TCTTCAGTTGTCAGATAGGCAAT 57.573 39.130 0.00 0.00 44.87 3.56
4113 5651 5.181009 TCTTCAGTTGTCAGATAGGCAATG 58.819 41.667 0.00 0.00 44.87 2.82
4115 5653 5.164620 TCAGTTGTCAGATAGGCAATGAA 57.835 39.130 0.00 0.00 44.87 2.57
4116 5654 5.559770 TCAGTTGTCAGATAGGCAATGAAA 58.440 37.500 0.00 0.00 44.87 2.69
4117 5655 5.412594 TCAGTTGTCAGATAGGCAATGAAAC 59.587 40.000 0.00 0.00 44.87 2.78
4118 5656 5.413833 CAGTTGTCAGATAGGCAATGAAACT 59.586 40.000 0.00 0.00 44.87 2.66
4119 5657 5.413833 AGTTGTCAGATAGGCAATGAAACTG 59.586 40.000 0.00 0.00 44.87 3.16
4120 5658 5.164620 TGTCAGATAGGCAATGAAACTGA 57.835 39.130 0.00 0.00 0.00 3.41
4122 5660 5.046376 TGTCAGATAGGCAATGAAACTGAGA 60.046 40.000 0.00 0.00 0.00 3.27
4123 5661 5.877012 GTCAGATAGGCAATGAAACTGAGAA 59.123 40.000 0.00 0.00 0.00 2.87
4125 5663 4.880696 AGATAGGCAATGAAACTGAGAAGC 59.119 41.667 0.00 0.00 0.00 3.86
4126 5664 1.808945 AGGCAATGAAACTGAGAAGCG 59.191 47.619 0.00 0.00 0.00 4.68
4127 5665 1.611043 GCAATGAAACTGAGAAGCGC 58.389 50.000 0.00 0.00 0.00 5.92
4128 5666 1.730446 GCAATGAAACTGAGAAGCGCC 60.730 52.381 2.29 0.00 0.00 6.53
4129 5667 0.798776 AATGAAACTGAGAAGCGCCG 59.201 50.000 2.29 0.00 0.00 6.46
4130 5668 1.021390 ATGAAACTGAGAAGCGCCGG 61.021 55.000 2.29 0.00 0.00 6.13
4134 5672 3.838271 CTGAGAAGCGCCGGCCTA 61.838 66.667 23.46 2.94 41.24 3.93
4135 5673 3.781770 CTGAGAAGCGCCGGCCTAG 62.782 68.421 23.46 8.39 41.24 3.02
4137 5675 3.492311 GAGAAGCGCCGGCCTAGAG 62.492 68.421 23.46 7.50 41.24 2.43
4149 5687 2.998316 GCCTAGAGCCTCATCTTGTT 57.002 50.000 0.00 0.00 34.35 2.83
4150 5688 3.274095 GCCTAGAGCCTCATCTTGTTT 57.726 47.619 0.00 0.00 34.35 2.83
4151 5689 4.408182 GCCTAGAGCCTCATCTTGTTTA 57.592 45.455 0.00 0.00 34.35 2.01
4152 5690 4.376146 GCCTAGAGCCTCATCTTGTTTAG 58.624 47.826 0.00 0.00 34.35 1.85
4153 5691 4.141824 GCCTAGAGCCTCATCTTGTTTAGT 60.142 45.833 0.00 0.00 34.35 2.24
4154 5692 5.627968 GCCTAGAGCCTCATCTTGTTTAGTT 60.628 44.000 0.00 0.00 34.35 2.24
4156 5694 6.981559 CCTAGAGCCTCATCTTGTTTAGTTAC 59.018 42.308 0.00 0.00 0.00 2.50
4158 5696 7.719871 AGAGCCTCATCTTGTTTAGTTACTA 57.280 36.000 0.00 0.00 0.00 1.82
4160 5698 7.178628 AGAGCCTCATCTTGTTTAGTTACTACA 59.821 37.037 0.00 0.00 0.00 2.74
4162 5700 7.819900 AGCCTCATCTTGTTTAGTTACTACAAG 59.180 37.037 17.36 17.36 46.28 3.16
4172 5710 9.622004 TGTTTAGTTACTACAAGAAATCGAGAG 57.378 33.333 0.00 0.00 0.00 3.20
4173 5711 9.623350 GTTTAGTTACTACAAGAAATCGAGAGT 57.377 33.333 0.00 0.00 0.00 3.24
4177 5715 8.790718 AGTTACTACAAGAAATCGAGAGTAACA 58.209 33.333 18.85 0.00 45.13 2.41
4178 5716 9.570488 GTTACTACAAGAAATCGAGAGTAACAT 57.430 33.333 14.13 0.00 43.49 2.71
4181 5719 7.909121 ACTACAAGAAATCGAGAGTAACATACG 59.091 37.037 0.00 0.00 0.00 3.06
4182 5720 5.515626 ACAAGAAATCGAGAGTAACATACGC 59.484 40.000 0.00 0.00 0.00 4.42
4184 5722 5.892568 AGAAATCGAGAGTAACATACGCTT 58.107 37.500 0.00 0.00 38.97 4.68
4185 5723 7.024340 AGAAATCGAGAGTAACATACGCTTA 57.976 36.000 0.00 0.00 38.97 3.09
4186 5724 7.478322 AGAAATCGAGAGTAACATACGCTTAA 58.522 34.615 0.00 0.00 38.97 1.85
4187 5725 8.136165 AGAAATCGAGAGTAACATACGCTTAAT 58.864 33.333 0.00 0.00 38.97 1.40
4189 5727 8.644318 AATCGAGAGTAACATACGCTTAATTT 57.356 30.769 0.00 0.00 38.97 1.82
4190 5728 8.644318 ATCGAGAGTAACATACGCTTAATTTT 57.356 30.769 0.00 0.00 38.97 1.82
4191 5729 8.470040 TCGAGAGTAACATACGCTTAATTTTT 57.530 30.769 0.00 0.00 38.97 1.94
4193 5731 8.377681 CGAGAGTAACATACGCTTAATTTTTCA 58.622 33.333 0.00 0.00 38.97 2.69
4194 5732 9.474249 GAGAGTAACATACGCTTAATTTTTCAC 57.526 33.333 0.00 0.00 38.97 3.18
4195 5733 8.995220 AGAGTAACATACGCTTAATTTTTCACA 58.005 29.630 0.00 0.00 35.17 3.58
4196 5734 9.601971 GAGTAACATACGCTTAATTTTTCACAA 57.398 29.630 0.00 0.00 0.00 3.33
4197 5735 9.953697 AGTAACATACGCTTAATTTTTCACAAA 57.046 25.926 0.00 0.00 0.00 2.83
4200 5738 9.909043 AACATACGCTTAATTTTTCACAAAAAC 57.091 25.926 0.00 0.00 42.57 2.43
4201 5739 9.088512 ACATACGCTTAATTTTTCACAAAAACA 57.911 25.926 0.00 0.00 42.57 2.83
4203 5741 9.909043 ATACGCTTAATTTTTCACAAAAACAAC 57.091 25.926 0.00 0.00 42.57 3.32
4204 5742 8.024146 ACGCTTAATTTTTCACAAAAACAACT 57.976 26.923 0.00 0.00 42.57 3.16
4206 5744 8.165428 CGCTTAATTTTTCACAAAAACAACTCA 58.835 29.630 0.00 0.00 42.57 3.41
4207 5745 9.261318 GCTTAATTTTTCACAAAAACAACTCAC 57.739 29.630 0.00 0.00 42.57 3.51
4212 5750 9.609950 ATTTTTCACAAAAACAACTCACATTTG 57.390 25.926 0.00 0.00 42.57 2.32
4213 5751 5.776519 TCACAAAAACAACTCACATTTGC 57.223 34.783 0.00 0.00 35.05 3.68
4214 5752 4.629200 TCACAAAAACAACTCACATTTGCC 59.371 37.500 0.00 0.00 35.05 4.52
4216 5754 5.064962 CACAAAAACAACTCACATTTGCCAT 59.935 36.000 0.00 0.00 35.05 4.40
4218 5756 6.150809 ACAAAAACAACTCACATTTGCCATTT 59.849 30.769 0.00 0.00 35.05 2.32
4219 5757 6.756299 AAAACAACTCACATTTGCCATTTT 57.244 29.167 0.00 0.00 0.00 1.82
4220 5758 5.989551 AACAACTCACATTTGCCATTTTC 57.010 34.783 0.00 0.00 0.00 2.29
4221 5759 5.021033 ACAACTCACATTTGCCATTTTCA 57.979 34.783 0.00 0.00 0.00 2.69
4222 5760 5.051816 ACAACTCACATTTGCCATTTTCAG 58.948 37.500 0.00 0.00 0.00 3.02
4223 5761 5.163426 ACAACTCACATTTGCCATTTTCAGA 60.163 36.000 0.00 0.00 0.00 3.27
4224 5762 5.534207 ACTCACATTTGCCATTTTCAGAA 57.466 34.783 0.00 0.00 0.00 3.02
4225 5763 6.105397 ACTCACATTTGCCATTTTCAGAAT 57.895 33.333 0.00 0.00 0.00 2.40
4227 5765 6.647895 ACTCACATTTGCCATTTTCAGAATTC 59.352 34.615 0.00 0.00 0.00 2.17
4229 5767 6.647481 TCACATTTGCCATTTTCAGAATTCAG 59.353 34.615 8.44 0.00 0.00 3.02
4230 5768 6.647481 CACATTTGCCATTTTCAGAATTCAGA 59.353 34.615 8.44 1.71 0.00 3.27
4231 5769 6.872020 ACATTTGCCATTTTCAGAATTCAGAG 59.128 34.615 8.44 0.00 0.00 3.35
4232 5770 5.395682 TTGCCATTTTCAGAATTCAGAGG 57.604 39.130 8.44 4.03 0.00 3.69
4233 5771 3.765511 TGCCATTTTCAGAATTCAGAGGG 59.234 43.478 8.44 6.85 0.00 4.30
4234 5772 3.766051 GCCATTTTCAGAATTCAGAGGGT 59.234 43.478 8.44 0.00 0.00 4.34
4236 5774 5.418840 GCCATTTTCAGAATTCAGAGGGTAA 59.581 40.000 8.44 0.00 0.00 2.85
4237 5775 6.625960 GCCATTTTCAGAATTCAGAGGGTAAC 60.626 42.308 8.44 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 4.115199 CCCTCGGCCAAGGAAGGG 62.115 72.222 12.80 10.50 38.87 3.95
235 236 4.390556 AGGGCCTCCTCGACAGCT 62.391 66.667 0.00 0.00 39.80 4.24
405 406 3.077556 GGAGGAGAAGCTGGCCGA 61.078 66.667 0.00 0.00 0.00 5.54
415 416 4.742649 AGCGCGACCTGGAGGAGA 62.743 66.667 12.10 0.00 38.94 3.71
549 553 3.441290 CGGCGAGGAGACCTTCGT 61.441 66.667 0.00 0.00 31.76 3.85
604 608 0.998945 AGAGAGAGAGAGGGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
610 614 2.774234 AGACAGAGAGAGAGAGAGAGGG 59.226 54.545 0.00 0.00 0.00 4.30
611 615 3.708631 AGAGACAGAGAGAGAGAGAGAGG 59.291 52.174 0.00 0.00 0.00 3.69
612 616 4.161189 ACAGAGACAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
613 617 4.096681 ACAGAGACAGAGAGAGAGAGAGA 58.903 47.826 0.00 0.00 0.00 3.10
614 618 4.161189 AGACAGAGACAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
618 622 5.674525 ACATAGACAGAGACAGAGAGAGAG 58.325 45.833 0.00 0.00 0.00 3.20
619 623 5.670485 GACATAGACAGAGACAGAGAGAGA 58.330 45.833 0.00 0.00 0.00 3.10
620 624 4.507756 CGACATAGACAGAGACAGAGAGAG 59.492 50.000 0.00 0.00 0.00 3.20
623 627 2.939756 GCGACATAGACAGAGACAGAGA 59.060 50.000 0.00 0.00 0.00 3.10
632 636 3.323136 GCGGCGCGACATAGACAG 61.323 66.667 19.09 0.00 0.00 3.51
679 683 1.528309 CCTCCCTCTCGAGCTCCTC 60.528 68.421 7.81 0.00 0.00 3.71
703 707 0.179100 CCCAGGATATATGCGCCGAG 60.179 60.000 4.18 0.00 0.00 4.63
704 708 1.897423 CCCAGGATATATGCGCCGA 59.103 57.895 4.18 0.00 0.00 5.54
705 709 1.815421 GCCCAGGATATATGCGCCG 60.815 63.158 4.18 0.00 0.00 6.46
706 710 1.452108 GGCCCAGGATATATGCGCC 60.452 63.158 4.18 6.00 34.68 6.53
707 711 1.815421 CGGCCCAGGATATATGCGC 60.815 63.158 0.00 0.00 0.00 6.09
708 712 1.153369 CCGGCCCAGGATATATGCG 60.153 63.158 0.00 0.00 0.00 4.73
754 758 0.037975 TAGGGCGTTTCTCAACCGTC 60.038 55.000 0.00 0.00 0.00 4.79
760 764 0.899720 ATCGGTTAGGGCGTTTCTCA 59.100 50.000 0.00 0.00 0.00 3.27
762 766 0.179119 CGATCGGTTAGGGCGTTTCT 60.179 55.000 7.38 0.00 0.00 2.52
768 772 1.067582 CTGTCCGATCGGTTAGGGC 59.932 63.158 32.15 16.60 36.47 5.19
774 778 2.885861 GTCAGCTGTCCGATCGGT 59.114 61.111 32.15 11.40 36.47 4.69
806 810 2.650778 CGCAACCCTGGCTTTTCC 59.349 61.111 0.00 0.00 0.00 3.13
833 839 4.339814 ACAACGCAACCCTTCTATCAAAAA 59.660 37.500 0.00 0.00 0.00 1.94
856 862 2.114411 GCTTTTCCCCCGTGGACA 59.886 61.111 0.00 0.00 45.11 4.02
883 890 3.466791 ATGGAATCCAGCCGAGCCG 62.467 63.158 8.40 0.00 36.75 5.52
884 891 1.599240 GATGGAATCCAGCCGAGCC 60.599 63.158 6.20 0.00 37.38 4.70
885 892 4.055654 GATGGAATCCAGCCGAGC 57.944 61.111 6.20 0.00 37.38 5.03
894 901 0.394565 CCGAGTGGGGAGATGGAATC 59.605 60.000 0.00 0.00 46.04 2.52
895 902 1.700042 GCCGAGTGGGGAGATGGAAT 61.700 60.000 0.00 0.00 35.78 3.01
897 904 2.764128 GCCGAGTGGGGAGATGGA 60.764 66.667 0.00 0.00 35.78 3.41
899 906 3.083349 TGGCCGAGTGGGGAGATG 61.083 66.667 0.00 0.00 35.78 2.90
900 907 3.083997 GTGGCCGAGTGGGGAGAT 61.084 66.667 0.00 0.00 35.78 2.75
901 908 4.316823 AGTGGCCGAGTGGGGAGA 62.317 66.667 0.00 0.00 35.78 3.71
929 936 4.221422 GCAGTGGATCCGCGGCTA 62.221 66.667 34.31 4.04 42.61 3.93
1039 1057 4.451150 GGCCGAGATCGCCACACA 62.451 66.667 5.33 0.00 38.18 3.72
1045 1063 2.355244 GCTACAGGCCGAGATCGC 60.355 66.667 0.00 0.00 38.18 4.58
1095 1114 2.107041 AACAACCCACAGATCGCCGA 62.107 55.000 0.00 0.00 0.00 5.54
1114 1133 1.227823 CAACCGAGCCAACCAGTCA 60.228 57.895 0.00 0.00 0.00 3.41
1124 1143 1.993369 GCATACAAGGCCAACCGAGC 61.993 60.000 5.01 0.00 42.76 5.03
1127 1146 1.802636 CAGCATACAAGGCCAACCG 59.197 57.895 5.01 0.00 42.76 4.44
1135 1154 1.662629 CTGGAAGACGCAGCATACAAG 59.337 52.381 0.00 0.00 34.07 3.16
1137 1156 0.608130 ACTGGAAGACGCAGCATACA 59.392 50.000 0.00 0.00 37.43 2.29
1151 1170 1.522806 GCACCACGTCAACACTGGA 60.523 57.895 0.00 0.00 0.00 3.86
1154 1173 2.587753 CCGCACCACGTCAACACT 60.588 61.111 0.00 0.00 41.42 3.55
1196 1215 1.302511 AATCTGCCCGACACACCAC 60.303 57.895 0.00 0.00 0.00 4.16
1203 1222 0.179062 ATCAGCTCAATCTGCCCGAC 60.179 55.000 0.00 0.00 34.19 4.79
1231 1250 3.081409 GGCTTCCTCGGCCTACCA 61.081 66.667 0.00 0.00 45.57 3.25
1246 1265 1.135527 TGCCATACGTACTACACAGGC 59.864 52.381 0.00 4.01 41.15 4.85
1272 1291 1.357690 CGTTCTGCCTATACCGCGA 59.642 57.895 8.23 0.00 0.00 5.87
1274 1293 0.874607 CACCGTTCTGCCTATACCGC 60.875 60.000 0.00 0.00 0.00 5.68
1275 1294 0.249322 CCACCGTTCTGCCTATACCG 60.249 60.000 0.00 0.00 0.00 4.02
1276 1295 1.117150 TCCACCGTTCTGCCTATACC 58.883 55.000 0.00 0.00 0.00 2.73
1278 1297 6.321435 CAGATATATCCACCGTTCTGCCTATA 59.679 42.308 9.18 0.00 0.00 1.31
1279 1298 5.127845 CAGATATATCCACCGTTCTGCCTAT 59.872 44.000 9.18 0.00 0.00 2.57
1280 1299 4.462834 CAGATATATCCACCGTTCTGCCTA 59.537 45.833 9.18 0.00 0.00 3.93
1281 1300 3.259374 CAGATATATCCACCGTTCTGCCT 59.741 47.826 9.18 0.00 0.00 4.75
1282 1301 3.258372 TCAGATATATCCACCGTTCTGCC 59.742 47.826 9.18 0.00 32.57 4.85
1283 1302 4.489810 CTCAGATATATCCACCGTTCTGC 58.510 47.826 9.18 0.00 32.57 4.26
1284 1303 4.219507 AGCTCAGATATATCCACCGTTCTG 59.780 45.833 9.18 0.00 33.55 3.02
1285 1304 4.411927 AGCTCAGATATATCCACCGTTCT 58.588 43.478 9.18 0.00 0.00 3.01
1286 1305 4.381079 GGAGCTCAGATATATCCACCGTTC 60.381 50.000 17.19 3.81 0.00 3.95
1287 1306 3.511934 GGAGCTCAGATATATCCACCGTT 59.488 47.826 17.19 0.00 0.00 4.44
1288 1307 3.093057 GGAGCTCAGATATATCCACCGT 58.907 50.000 17.19 0.00 0.00 4.83
1289 1308 3.130164 CAGGAGCTCAGATATATCCACCG 59.870 52.174 17.19 0.00 32.21 4.94
1290 1309 4.081752 CACAGGAGCTCAGATATATCCACC 60.082 50.000 17.19 2.63 32.21 4.61
1291 1310 4.769488 TCACAGGAGCTCAGATATATCCAC 59.231 45.833 17.19 0.00 32.21 4.02
1292 1311 5.003096 TCACAGGAGCTCAGATATATCCA 57.997 43.478 17.19 0.00 32.21 3.41
1293 1312 6.543430 AATCACAGGAGCTCAGATATATCC 57.457 41.667 17.19 0.00 0.00 2.59
1294 1313 7.148440 GCAAAATCACAGGAGCTCAGATATATC 60.148 40.741 17.19 4.42 0.00 1.63
1295 1314 6.654161 GCAAAATCACAGGAGCTCAGATATAT 59.346 38.462 17.19 0.00 0.00 0.86
1296 1315 5.994054 GCAAAATCACAGGAGCTCAGATATA 59.006 40.000 17.19 0.00 0.00 0.86
1297 1316 4.820716 GCAAAATCACAGGAGCTCAGATAT 59.179 41.667 17.19 4.11 0.00 1.63
1298 1317 4.080695 AGCAAAATCACAGGAGCTCAGATA 60.081 41.667 17.19 1.91 0.00 1.98
1299 1318 3.015327 GCAAAATCACAGGAGCTCAGAT 58.985 45.455 17.19 9.92 0.00 2.90
1300 1319 2.039480 AGCAAAATCACAGGAGCTCAGA 59.961 45.455 17.19 7.92 0.00 3.27
1301 1320 2.434428 AGCAAAATCACAGGAGCTCAG 58.566 47.619 17.19 10.01 0.00 3.35
1302 1321 2.555325 CAAGCAAAATCACAGGAGCTCA 59.445 45.455 17.19 0.00 0.00 4.26
1303 1322 2.670509 GCAAGCAAAATCACAGGAGCTC 60.671 50.000 4.71 4.71 0.00 4.09
1304 1323 1.271656 GCAAGCAAAATCACAGGAGCT 59.728 47.619 0.00 0.00 0.00 4.09
1305 1324 1.271656 AGCAAGCAAAATCACAGGAGC 59.728 47.619 0.00 0.00 0.00 4.70
1306 1325 3.755378 AGTAGCAAGCAAAATCACAGGAG 59.245 43.478 0.00 0.00 0.00 3.69
1307 1326 3.753272 GAGTAGCAAGCAAAATCACAGGA 59.247 43.478 0.00 0.00 0.00 3.86
1308 1327 3.119708 GGAGTAGCAAGCAAAATCACAGG 60.120 47.826 0.00 0.00 0.00 4.00
1309 1328 3.425359 CGGAGTAGCAAGCAAAATCACAG 60.425 47.826 0.00 0.00 0.00 3.66
1310 1329 2.483877 CGGAGTAGCAAGCAAAATCACA 59.516 45.455 0.00 0.00 0.00 3.58
1311 1330 2.742053 TCGGAGTAGCAAGCAAAATCAC 59.258 45.455 0.00 0.00 0.00 3.06
1312 1331 3.052455 TCGGAGTAGCAAGCAAAATCA 57.948 42.857 0.00 0.00 0.00 2.57
1341 1360 1.536073 CCTTGTCGGCTCCTCACTCA 61.536 60.000 0.00 0.00 0.00 3.41
1376 1395 2.199236 GGATAACTCGACGCCGAAATT 58.801 47.619 0.00 0.00 45.04 1.82
1381 1400 1.401148 CCTATGGATAACTCGACGCCG 60.401 57.143 0.00 0.00 37.07 6.46
1396 1415 2.362077 GCAAACAAGTATGGCCCCTATG 59.638 50.000 0.00 0.00 0.00 2.23
1397 1416 2.244769 AGCAAACAAGTATGGCCCCTAT 59.755 45.455 0.00 0.00 0.00 2.57
1420 1439 4.321745 CGCTTGACAAAAATACATGCTGAC 59.678 41.667 0.00 0.00 34.24 3.51
1421 1440 4.215185 TCGCTTGACAAAAATACATGCTGA 59.785 37.500 0.00 0.00 34.24 4.26
1422 1441 4.475028 TCGCTTGACAAAAATACATGCTG 58.525 39.130 0.00 0.00 34.24 4.41
1423 1442 4.216257 ACTCGCTTGACAAAAATACATGCT 59.784 37.500 0.00 0.00 34.24 3.79
1457 1621 5.049167 ACTCGTGTTGTAACCGTCAATTTA 58.951 37.500 0.00 0.00 0.00 1.40
1465 1629 0.032403 TGGGACTCGTGTTGTAACCG 59.968 55.000 0.00 0.00 0.00 4.44
1473 1637 1.003355 CAGCCAATGGGACTCGTGT 60.003 57.895 0.00 0.00 35.59 4.49
1483 1647 2.050350 CACAGGAGGCCAGCCAATG 61.050 63.158 16.09 8.67 38.92 2.82
1516 1680 5.163540 GCTCCTTACTCACTTCCTATTCGAA 60.164 44.000 0.00 0.00 0.00 3.71
1518 1682 4.098044 TGCTCCTTACTCACTTCCTATTCG 59.902 45.833 0.00 0.00 0.00 3.34
1546 1710 2.418368 TTAGCATGCCGACAAATCCT 57.582 45.000 15.66 0.00 0.00 3.24
1549 1713 4.499696 GCCTAAATTAGCATGCCGACAAAT 60.500 41.667 15.66 4.13 0.00 2.32
1569 1733 2.507471 CCCTAAGGAGAACTCAATGCCT 59.493 50.000 4.23 0.00 33.47 4.75
1573 1737 1.847088 GGCCCCTAAGGAGAACTCAAT 59.153 52.381 0.00 0.00 38.24 2.57
1581 1745 2.127708 ACAAGTATGGCCCCTAAGGAG 58.872 52.381 0.00 0.00 38.24 3.69
1633 1797 0.614415 TCAATTTGCCGCCCCTTCAT 60.614 50.000 0.00 0.00 0.00 2.57
1657 1821 2.281761 GTCCCAGGTGGTGCTGTG 60.282 66.667 0.00 0.00 34.77 3.66
1663 1827 1.151450 CAAAGCAGTCCCAGGTGGT 59.849 57.895 0.00 0.00 34.77 4.16
1672 1836 1.967319 TCCAGGAACACAAAGCAGTC 58.033 50.000 0.00 0.00 0.00 3.51
1673 1837 2.024414 GTTCCAGGAACACAAAGCAGT 58.976 47.619 25.34 0.00 41.62 4.40
1674 1838 1.338020 GGTTCCAGGAACACAAAGCAG 59.662 52.381 29.89 0.00 43.54 4.24
1686 1850 1.259840 CCAGCCAATTGGGTTCCAGG 61.260 60.000 26.36 19.68 44.81 4.45
1697 1861 0.394899 GCACTTCTAGGCCAGCCAAT 60.395 55.000 12.03 0.00 38.92 3.16
1710 1874 0.731417 AAGATGCTGCGATGCACTTC 59.269 50.000 4.95 1.11 46.33 3.01
1716 1880 1.070108 CGGAATCAAGATGCTGCGATG 60.070 52.381 0.00 0.00 0.00 3.84
1717 1881 1.224075 CGGAATCAAGATGCTGCGAT 58.776 50.000 0.00 0.00 0.00 4.58
1719 1883 1.645455 CCGGAATCAAGATGCTGCG 59.355 57.895 0.00 0.00 0.00 5.18
1732 1898 0.453793 CACAAACAACACTGCCGGAA 59.546 50.000 5.05 0.00 0.00 4.30
1735 1901 1.588667 GGCACAAACAACACTGCCG 60.589 57.895 0.00 0.00 39.92 5.69
1775 1941 4.750098 CCTATGAAGAAATCCGCGTGTATT 59.250 41.667 4.92 0.00 0.00 1.89
1784 1950 6.532826 AGAGCTGATTCCTATGAAGAAATCC 58.467 40.000 0.00 0.00 33.05 3.01
1797 1963 6.749923 ACAGTAAATTGAAGAGCTGATTCC 57.250 37.500 0.00 0.00 0.00 3.01
2428 3858 7.067615 TGGCTCGAATTATTTGGCTGTAAATAA 59.932 33.333 12.80 12.80 43.02 1.40
2622 4055 3.072944 ACTTCAAAGAGCAGACTCATGC 58.927 45.455 0.00 0.00 46.09 4.06
2814 4247 4.456280 TGACATACGAGAGAAATGTGCT 57.544 40.909 0.00 0.00 39.83 4.40
2971 4404 4.633175 TCGATACAAGGCACAACAAGTAA 58.367 39.130 0.00 0.00 0.00 2.24
3108 4541 2.483876 TGAAGAGAACTTTGCACCTCG 58.516 47.619 0.00 0.00 36.39 4.63
3192 4663 4.937620 GCCTCTGAATCTGTTGAACATACA 59.062 41.667 0.00 0.00 0.00 2.29
3273 4750 3.038788 TGAATCAAGCAACAGACGCTA 57.961 42.857 0.00 0.00 39.29 4.26
3274 4751 1.882912 TGAATCAAGCAACAGACGCT 58.117 45.000 0.00 0.00 42.98 5.07
3512 5041 4.890158 TGCACATGAAGAACTTAGGAGA 57.110 40.909 0.00 0.00 0.00 3.71
3547 5076 4.478206 AGGACCATGTAATCACTGAGTG 57.522 45.455 6.18 6.18 34.45 3.51
3628 5161 5.301555 TCACATTGTCACTGACGGAAAATA 58.698 37.500 4.71 0.00 34.95 1.40
3647 5180 7.283354 ACTTGACTCTATCAACGATATCTCACA 59.717 37.037 0.34 0.00 42.62 3.58
3669 5202 0.798776 GTGATGCAGACGGGAACTTG 59.201 55.000 0.00 0.00 0.00 3.16
3670 5203 0.687354 AGTGATGCAGACGGGAACTT 59.313 50.000 0.00 0.00 0.00 2.66
3671 5204 0.247736 GAGTGATGCAGACGGGAACT 59.752 55.000 0.00 0.00 0.00 3.01
3672 5205 0.741221 GGAGTGATGCAGACGGGAAC 60.741 60.000 0.00 0.00 0.00 3.62
3675 5210 1.153489 CAGGAGTGATGCAGACGGG 60.153 63.158 0.00 0.00 0.00 5.28
3679 5214 3.273434 GCATAAACAGGAGTGATGCAGA 58.727 45.455 0.00 0.00 42.84 4.26
3703 5238 6.885918 TCAATACAAGGCATGTGGATATATGG 59.114 38.462 5.49 0.00 43.77 2.74
3707 5242 5.072741 GGTCAATACAAGGCATGTGGATAT 58.927 41.667 5.49 0.00 43.77 1.63
3728 5263 8.631480 AAACCTTCGATCAAATACTAAAAGGT 57.369 30.769 0.00 0.00 45.32 3.50
3738 5273 8.801882 TCCTTACATTAAACCTTCGATCAAAT 57.198 30.769 0.00 0.00 0.00 2.32
3784 5319 2.558359 CCAAACCTACCTGCCTTTTCTG 59.442 50.000 0.00 0.00 0.00 3.02
3787 5324 2.767644 ACCAAACCTACCTGCCTTTT 57.232 45.000 0.00 0.00 0.00 2.27
3794 5331 7.971368 ATATTTTGCATTACCAAACCTACCT 57.029 32.000 0.00 0.00 34.68 3.08
3826 5364 5.702209 GGATGAAAATGCACATGAAAAACCT 59.298 36.000 0.00 0.00 0.00 3.50
3868 5406 3.084039 CAAATCTGGTTCCAAGCTGCTA 58.916 45.455 0.90 0.00 0.00 3.49
3920 5458 7.508977 TCAAATTCCCTGGATACTCAAACTTTT 59.491 33.333 0.00 0.00 37.61 2.27
3923 5461 6.139679 TCAAATTCCCTGGATACTCAAACT 57.860 37.500 0.00 0.00 37.61 2.66
3928 5466 5.261216 TGGTTTCAAATTCCCTGGATACTC 58.739 41.667 0.00 0.00 37.61 2.59
3929 5467 5.269554 TGGTTTCAAATTCCCTGGATACT 57.730 39.130 0.00 0.00 37.61 2.12
3936 5474 6.061022 AGTGTTTTTGGTTTCAAATTCCCT 57.939 33.333 0.00 0.00 41.84 4.20
3960 5498 3.833650 TGGAATTGGAGTGTTGCAATCAT 59.166 39.130 0.59 0.00 43.53 2.45
3961 5499 3.229293 TGGAATTGGAGTGTTGCAATCA 58.771 40.909 0.59 0.00 43.53 2.57
3962 5500 3.841643 CTGGAATTGGAGTGTTGCAATC 58.158 45.455 0.59 0.00 43.53 2.67
3963 5501 2.028748 GCTGGAATTGGAGTGTTGCAAT 60.029 45.455 0.59 0.00 45.87 3.56
3964 5502 1.340889 GCTGGAATTGGAGTGTTGCAA 59.659 47.619 0.00 0.00 39.07 4.08
3965 5503 0.961019 GCTGGAATTGGAGTGTTGCA 59.039 50.000 0.00 0.00 0.00 4.08
3966 5504 0.961019 TGCTGGAATTGGAGTGTTGC 59.039 50.000 0.00 0.00 0.00 4.17
3967 5505 1.069022 CGTGCTGGAATTGGAGTGTTG 60.069 52.381 0.00 0.00 0.00 3.33
3968 5506 1.202758 TCGTGCTGGAATTGGAGTGTT 60.203 47.619 0.00 0.00 0.00 3.32
3969 5507 0.396435 TCGTGCTGGAATTGGAGTGT 59.604 50.000 0.00 0.00 0.00 3.55
3970 5508 1.742761 ATCGTGCTGGAATTGGAGTG 58.257 50.000 0.00 0.00 0.00 3.51
3971 5509 2.026822 AGAATCGTGCTGGAATTGGAGT 60.027 45.455 0.00 0.00 0.00 3.85
3972 5510 2.636830 AGAATCGTGCTGGAATTGGAG 58.363 47.619 0.00 0.00 0.00 3.86
3973 5511 2.749076 CAAGAATCGTGCTGGAATTGGA 59.251 45.455 0.00 0.00 0.00 3.53
3974 5512 2.733227 GCAAGAATCGTGCTGGAATTGG 60.733 50.000 13.67 0.00 39.00 3.16
3979 5517 3.874873 CGCAAGAATCGTGCTGGA 58.125 55.556 18.05 0.00 39.95 3.86
3987 5525 7.118245 TGACCATGTTATCATATCGCAAGAATC 59.882 37.037 0.00 0.00 40.62 2.52
4009 5547 3.414700 CTGGCGTGCGTTCTGACC 61.415 66.667 0.00 0.00 0.00 4.02
4046 5584 0.395586 TTTGGTGTGCTGCTCCTTGT 60.396 50.000 0.00 0.00 0.00 3.16
4048 5586 0.963962 CATTTGGTGTGCTGCTCCTT 59.036 50.000 0.00 0.00 0.00 3.36
4049 5587 0.178981 ACATTTGGTGTGCTGCTCCT 60.179 50.000 0.00 0.00 40.28 3.69
4061 5599 3.713288 CATGCCTTCTATGCACATTTGG 58.287 45.455 0.00 0.00 42.38 3.28
4070 5608 3.635373 AGAAACCATGCATGCCTTCTATG 59.365 43.478 27.24 11.47 30.35 2.23
4071 5609 3.907221 AGAAACCATGCATGCCTTCTAT 58.093 40.909 27.24 13.64 30.35 1.98
4072 5610 3.370840 AGAAACCATGCATGCCTTCTA 57.629 42.857 27.24 0.00 30.35 2.10
4073 5611 2.226962 AGAAACCATGCATGCCTTCT 57.773 45.000 24.80 24.80 0.00 2.85
4074 5612 2.231964 TGAAGAAACCATGCATGCCTTC 59.768 45.455 25.53 25.53 0.00 3.46
4075 5613 2.232941 CTGAAGAAACCATGCATGCCTT 59.767 45.455 21.69 18.41 0.00 4.35
4076 5614 1.822990 CTGAAGAAACCATGCATGCCT 59.177 47.619 21.69 11.51 0.00 4.75
4078 5616 2.991190 CAACTGAAGAAACCATGCATGC 59.009 45.455 21.69 11.82 0.00 4.06
4079 5617 4.232221 GACAACTGAAGAAACCATGCATG 58.768 43.478 20.19 20.19 0.00 4.06
4080 5618 3.890756 TGACAACTGAAGAAACCATGCAT 59.109 39.130 0.00 0.00 0.00 3.96
4081 5619 3.286353 TGACAACTGAAGAAACCATGCA 58.714 40.909 0.00 0.00 0.00 3.96
4082 5620 3.565482 TCTGACAACTGAAGAAACCATGC 59.435 43.478 0.00 0.00 0.00 4.06
4083 5621 5.954296 ATCTGACAACTGAAGAAACCATG 57.046 39.130 0.00 0.00 0.00 3.66
4085 5623 5.551233 CCTATCTGACAACTGAAGAAACCA 58.449 41.667 0.00 0.00 0.00 3.67
4086 5624 4.393371 GCCTATCTGACAACTGAAGAAACC 59.607 45.833 0.00 0.00 0.00 3.27
4088 5626 5.227569 TGCCTATCTGACAACTGAAGAAA 57.772 39.130 0.00 0.00 0.00 2.52
4089 5627 4.890158 TGCCTATCTGACAACTGAAGAA 57.110 40.909 0.00 0.00 0.00 2.52
4091 5629 5.181009 TCATTGCCTATCTGACAACTGAAG 58.819 41.667 0.00 0.00 0.00 3.02
4092 5630 5.164620 TCATTGCCTATCTGACAACTGAA 57.835 39.130 0.00 0.00 0.00 3.02
4094 5632 5.413833 AGTTTCATTGCCTATCTGACAACTG 59.586 40.000 0.00 0.00 0.00 3.16
4095 5633 5.413833 CAGTTTCATTGCCTATCTGACAACT 59.586 40.000 0.00 0.00 0.00 3.16
4097 5635 5.559770 TCAGTTTCATTGCCTATCTGACAA 58.440 37.500 0.00 0.00 0.00 3.18
4098 5636 5.046376 TCTCAGTTTCATTGCCTATCTGACA 60.046 40.000 0.00 0.00 0.00 3.58
4099 5637 5.423015 TCTCAGTTTCATTGCCTATCTGAC 58.577 41.667 0.00 0.00 0.00 3.51
4100 5638 5.682234 TCTCAGTTTCATTGCCTATCTGA 57.318 39.130 0.00 0.00 0.00 3.27
4101 5639 5.220815 GCTTCTCAGTTTCATTGCCTATCTG 60.221 44.000 0.00 0.00 0.00 2.90
4102 5640 4.880696 GCTTCTCAGTTTCATTGCCTATCT 59.119 41.667 0.00 0.00 0.00 1.98
4104 5642 3.624861 CGCTTCTCAGTTTCATTGCCTAT 59.375 43.478 0.00 0.00 0.00 2.57
4105 5643 3.002791 CGCTTCTCAGTTTCATTGCCTA 58.997 45.455 0.00 0.00 0.00 3.93
4106 5644 1.808945 CGCTTCTCAGTTTCATTGCCT 59.191 47.619 0.00 0.00 0.00 4.75
4107 5645 1.730446 GCGCTTCTCAGTTTCATTGCC 60.730 52.381 0.00 0.00 0.00 4.52
4108 5646 1.611043 GCGCTTCTCAGTTTCATTGC 58.389 50.000 0.00 0.00 0.00 3.56
4109 5647 1.464687 CGGCGCTTCTCAGTTTCATTG 60.465 52.381 7.64 0.00 0.00 2.82
4110 5648 0.798776 CGGCGCTTCTCAGTTTCATT 59.201 50.000 7.64 0.00 0.00 2.57
4112 5650 1.667830 CCGGCGCTTCTCAGTTTCA 60.668 57.895 7.64 0.00 0.00 2.69
4113 5651 3.028366 GCCGGCGCTTCTCAGTTTC 62.028 63.158 12.58 0.00 0.00 2.78
4117 5655 3.781770 CTAGGCCGGCGCTTCTCAG 62.782 68.421 22.54 8.99 34.44 3.35
4118 5656 3.838271 CTAGGCCGGCGCTTCTCA 61.838 66.667 22.54 2.73 34.44 3.27
4119 5657 3.492311 CTCTAGGCCGGCGCTTCTC 62.492 68.421 22.54 4.96 34.44 2.87
4120 5658 3.532155 CTCTAGGCCGGCGCTTCT 61.532 66.667 22.54 14.53 34.44 2.85
4130 5668 2.998316 AACAAGATGAGGCTCTAGGC 57.002 50.000 16.72 2.41 41.43 3.93
4132 5670 7.777095 AGTAACTAAACAAGATGAGGCTCTAG 58.223 38.462 16.72 8.64 0.00 2.43
4133 5671 7.719871 AGTAACTAAACAAGATGAGGCTCTA 57.280 36.000 16.72 2.46 0.00 2.43
4134 5672 6.613153 AGTAACTAAACAAGATGAGGCTCT 57.387 37.500 16.72 0.75 0.00 4.09
4135 5673 7.321153 TGTAGTAACTAAACAAGATGAGGCTC 58.679 38.462 7.79 7.79 0.00 4.70
4137 5675 7.900782 TTGTAGTAACTAAACAAGATGAGGC 57.099 36.000 0.00 0.00 0.00 4.70
4145 5683 9.970395 TCTCGATTTCTTGTAGTAACTAAACAA 57.030 29.630 0.00 0.00 0.00 2.83
4146 5684 9.622004 CTCTCGATTTCTTGTAGTAACTAAACA 57.378 33.333 0.00 0.00 0.00 2.83
4147 5685 9.623350 ACTCTCGATTTCTTGTAGTAACTAAAC 57.377 33.333 0.00 0.00 0.00 2.01
4151 5689 8.790718 TGTTACTCTCGATTTCTTGTAGTAACT 58.209 33.333 18.08 0.00 43.93 2.24
4152 5690 8.961294 TGTTACTCTCGATTTCTTGTAGTAAC 57.039 34.615 13.01 13.01 43.89 2.50
4156 5694 7.096966 GCGTATGTTACTCTCGATTTCTTGTAG 60.097 40.741 0.00 0.00 0.00 2.74
4158 5696 5.515626 GCGTATGTTACTCTCGATTTCTTGT 59.484 40.000 0.00 0.00 0.00 3.16
4160 5698 5.892568 AGCGTATGTTACTCTCGATTTCTT 58.107 37.500 0.00 0.00 0.00 2.52
4162 5700 7.675270 TTAAGCGTATGTTACTCTCGATTTC 57.325 36.000 0.00 0.00 32.74 2.17
4163 5701 8.644318 AATTAAGCGTATGTTACTCTCGATTT 57.356 30.769 0.00 0.00 32.74 2.17
4165 5703 8.644318 AAAATTAAGCGTATGTTACTCTCGAT 57.356 30.769 0.00 0.00 0.00 3.59
4166 5704 8.470040 AAAAATTAAGCGTATGTTACTCTCGA 57.530 30.769 0.00 0.00 0.00 4.04
4167 5705 8.377681 TGAAAAATTAAGCGTATGTTACTCTCG 58.622 33.333 0.00 0.00 0.00 4.04
4168 5706 9.474249 GTGAAAAATTAAGCGTATGTTACTCTC 57.526 33.333 0.00 0.00 0.00 3.20
4169 5707 8.995220 TGTGAAAAATTAAGCGTATGTTACTCT 58.005 29.630 0.00 0.00 0.00 3.24
4174 5712 9.909043 GTTTTTGTGAAAAATTAAGCGTATGTT 57.091 25.926 0.00 0.00 41.85 2.71
4175 5713 9.088512 TGTTTTTGTGAAAAATTAAGCGTATGT 57.911 25.926 0.00 0.00 41.85 2.29
4176 5714 9.907576 TTGTTTTTGTGAAAAATTAAGCGTATG 57.092 25.926 0.00 0.00 41.85 2.39
4177 5715 9.909043 GTTGTTTTTGTGAAAAATTAAGCGTAT 57.091 25.926 0.00 0.00 41.85 3.06
4178 5716 9.141400 AGTTGTTTTTGTGAAAAATTAAGCGTA 57.859 25.926 0.00 0.00 41.85 4.42
4179 5717 8.024146 AGTTGTTTTTGTGAAAAATTAAGCGT 57.976 26.923 0.00 0.00 41.85 5.07
4180 5718 8.165428 TGAGTTGTTTTTGTGAAAAATTAAGCG 58.835 29.630 0.00 0.00 41.85 4.68
4181 5719 9.261318 GTGAGTTGTTTTTGTGAAAAATTAAGC 57.739 29.630 0.00 0.00 41.85 3.09
4186 5724 9.609950 CAAATGTGAGTTGTTTTTGTGAAAAAT 57.390 25.926 0.00 0.00 41.85 1.82
4187 5725 7.589221 GCAAATGTGAGTTGTTTTTGTGAAAAA 59.411 29.630 0.00 0.00 36.56 1.94
4189 5727 6.348050 GGCAAATGTGAGTTGTTTTTGTGAAA 60.348 34.615 0.00 0.00 31.56 2.69
4190 5728 5.121454 GGCAAATGTGAGTTGTTTTTGTGAA 59.879 36.000 0.00 0.00 31.56 3.18
4191 5729 4.629200 GGCAAATGTGAGTTGTTTTTGTGA 59.371 37.500 0.00 0.00 31.56 3.58
4193 5731 4.573900 TGGCAAATGTGAGTTGTTTTTGT 58.426 34.783 0.00 0.00 31.56 2.83
4194 5732 5.738118 ATGGCAAATGTGAGTTGTTTTTG 57.262 34.783 0.00 0.00 0.00 2.44
4195 5733 6.756299 AAATGGCAAATGTGAGTTGTTTTT 57.244 29.167 0.00 0.00 0.00 1.94
4196 5734 6.373774 TGAAAATGGCAAATGTGAGTTGTTTT 59.626 30.769 0.00 0.00 0.00 2.43
4197 5735 5.879223 TGAAAATGGCAAATGTGAGTTGTTT 59.121 32.000 0.00 0.00 0.00 2.83
4198 5736 5.426504 TGAAAATGGCAAATGTGAGTTGTT 58.573 33.333 0.00 0.00 0.00 2.83
4200 5738 5.291178 TCTGAAAATGGCAAATGTGAGTTG 58.709 37.500 0.00 0.00 0.00 3.16
4201 5739 5.534207 TCTGAAAATGGCAAATGTGAGTT 57.466 34.783 0.00 0.00 0.00 3.01
4203 5741 6.647481 TGAATTCTGAAAATGGCAAATGTGAG 59.353 34.615 7.05 0.00 0.00 3.51
4204 5742 6.522946 TGAATTCTGAAAATGGCAAATGTGA 58.477 32.000 7.05 0.00 0.00 3.58
4206 5744 6.761312 TCTGAATTCTGAAAATGGCAAATGT 58.239 32.000 12.17 0.00 0.00 2.71
4207 5745 6.312918 CCTCTGAATTCTGAAAATGGCAAATG 59.687 38.462 14.97 1.00 0.00 2.32
4208 5746 6.403878 CCTCTGAATTCTGAAAATGGCAAAT 58.596 36.000 14.97 0.00 0.00 2.32
4210 5748 4.221262 CCCTCTGAATTCTGAAAATGGCAA 59.779 41.667 14.97 0.00 0.00 4.52
4211 5749 3.765511 CCCTCTGAATTCTGAAAATGGCA 59.234 43.478 14.97 0.00 0.00 4.92
4212 5750 3.766051 ACCCTCTGAATTCTGAAAATGGC 59.234 43.478 14.97 0.00 0.00 4.40
4213 5751 6.434028 TGTTACCCTCTGAATTCTGAAAATGG 59.566 38.462 14.97 12.20 0.00 3.16
4214 5752 7.452880 TGTTACCCTCTGAATTCTGAAAATG 57.547 36.000 14.97 4.81 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.