Multiple sequence alignment - TraesCS1D01G373500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G373500 chr1D 100.000 3483 0 0 1 3483 451243189 451246671 0.000000e+00 6433.0
1 TraesCS1D01G373500 chr1D 93.972 2024 110 6 1076 3090 451140962 451142982 0.000000e+00 3051.0
2 TraesCS1D01G373500 chr1D 83.523 1669 234 23 901 2552 451195072 451196716 0.000000e+00 1520.0
3 TraesCS1D01G373500 chr1D 87.260 416 26 1 2 417 451139458 451139846 1.910000e-122 449.0
4 TraesCS1D01G373500 chr1D 93.056 288 12 3 412 699 451140102 451140381 6.960000e-112 414.0
5 TraesCS1D01G373500 chr1D 91.837 147 12 0 553 699 473863201 473863055 4.560000e-49 206.0
6 TraesCS1D01G373500 chr1B 92.004 2051 132 19 1080 3107 619529576 619531617 0.000000e+00 2850.0
7 TraesCS1D01G373500 chr1B 83.627 1588 228 23 898 2478 619535706 619537268 0.000000e+00 1463.0
8 TraesCS1D01G373500 chr1B 84.762 1470 206 14 1091 2552 619430629 619432088 0.000000e+00 1458.0
9 TraesCS1D01G373500 chr1B 86.406 1280 158 9 1004 2274 619544909 619546181 0.000000e+00 1386.0
10 TraesCS1D01G373500 chr1B 81.269 1324 224 14 1193 2508 619586175 619587482 0.000000e+00 1050.0
11 TraesCS1D01G373500 chr1B 94.952 416 21 0 2 417 619429333 619429748 0.000000e+00 652.0
12 TraesCS1D01G373500 chr1B 90.865 416 38 0 1 416 619584908 619585323 3.040000e-155 558.0
13 TraesCS1D01G373500 chr1B 90.625 416 35 1 1 416 619542667 619543078 1.830000e-152 549.0
14 TraesCS1D01G373500 chr1B 83.725 596 47 28 385 948 619543905 619544482 5.150000e-143 518.0
15 TraesCS1D01G373500 chr1B 86.779 416 28 1 2 417 619433033 619433421 4.130000e-119 438.0
16 TraesCS1D01G373500 chr1B 92.908 282 15 2 412 693 619430004 619430280 4.190000e-109 405.0
17 TraesCS1D01G373500 chr1B 82.410 415 37 12 771 1160 619585703 619586106 2.590000e-86 329.0
18 TraesCS1D01G373500 chr1B 87.037 270 13 4 490 744 619528778 619529040 5.690000e-73 285.0
19 TraesCS1D01G373500 chr1B 80.208 288 45 9 877 1160 619543464 619543743 4.560000e-49 206.0
20 TraesCS1D01G373500 chr1B 91.837 147 12 0 553 699 658915625 658915479 4.560000e-49 206.0
21 TraesCS1D01G373500 chr1B 94.521 73 3 1 416 487 619433680 619433752 1.020000e-20 111.0
22 TraesCS1D01G373500 chr1B 96.970 33 0 1 412 444 619543335 619543366 2.000000e-03 54.7
23 TraesCS1D01G373500 chr1B 100.000 28 0 0 968 995 619544520 619544547 6.000000e-03 52.8
24 TraesCS1D01G373500 chr1A 91.533 1748 112 15 1076 2813 545896880 545898601 0.000000e+00 2375.0
25 TraesCS1D01G373500 chr1A 84.229 1674 224 20 901 2552 545908006 545909661 0.000000e+00 1592.0
26 TraesCS1D01G373500 chr1A 88.218 348 18 5 412 744 545896099 545896438 9.060000e-106 394.0
27 TraesCS1D01G373500 chr1A 94.000 250 14 1 2 250 545895455 545895704 9.130000e-101 377.0
28 TraesCS1D01G373500 chr1A 91.837 147 12 0 553 699 568109060 568108914 4.560000e-49 206.0
29 TraesCS1D01G373500 chr1A 97.368 76 2 0 741 816 545896648 545896723 2.820000e-26 130.0
30 TraesCS1D01G373500 chr1A 96.429 56 2 0 741 796 9255221 9255276 3.700000e-15 93.5
31 TraesCS1D01G373500 chr1A 96.429 56 2 0 741 796 516149215 516149160 3.700000e-15 93.5
32 TraesCS1D01G373500 chr2B 81.197 351 59 6 2127 2472 517746617 517746965 3.420000e-70 276.0
33 TraesCS1D01G373500 chr2B 80.899 356 57 9 2124 2472 517754096 517754447 1.590000e-68 270.0
34 TraesCS1D01G373500 chr2B 96.429 56 2 0 741 796 728933387 728933442 3.700000e-15 93.5
35 TraesCS1D01G373500 chr2A 81.416 339 56 6 2139 2472 583103908 583103572 1.590000e-68 270.0
36 TraesCS1D01G373500 chr2A 96.429 56 2 0 741 796 100973275 100973330 3.700000e-15 93.5
37 TraesCS1D01G373500 chr7D 86.957 138 13 3 3349 3483 422142968 422143103 2.170000e-32 150.0
38 TraesCS1D01G373500 chr7D 87.234 94 9 3 553 643 543393672 543393765 1.710000e-18 104.0
39 TraesCS1D01G373500 chr7A 85.827 127 15 3 3351 3475 468568878 468569003 7.840000e-27 132.0
40 TraesCS1D01G373500 chr4D 83.206 131 16 4 3349 3476 22594924 22595051 7.900000e-22 115.0
41 TraesCS1D01G373500 chr4D 100.000 29 0 0 2736 2764 298241428 298241400 2.000000e-03 54.7
42 TraesCS1D01G373500 chr6D 96.429 56 2 0 741 796 318999287 318999232 3.700000e-15 93.5
43 TraesCS1D01G373500 chr6D 100.000 29 0 0 2736 2764 467931842 467931814 2.000000e-03 54.7
44 TraesCS1D01G373500 chr6B 96.429 56 2 0 741 796 94140174 94140119 3.700000e-15 93.5
45 TraesCS1D01G373500 chr6B 100.000 29 0 0 2736 2764 436805431 436805403 2.000000e-03 54.7
46 TraesCS1D01G373500 chr5B 96.429 56 2 0 741 796 673112127 673112072 3.700000e-15 93.5
47 TraesCS1D01G373500 chr5B 100.000 29 0 0 2736 2764 587124039 587124011 2.000000e-03 54.7
48 TraesCS1D01G373500 chr5A 96.429 56 2 0 741 796 364529270 364529325 3.700000e-15 93.5
49 TraesCS1D01G373500 chr5D 96.970 33 1 0 2732 2764 479455981 479455949 4.860000e-04 56.5
50 TraesCS1D01G373500 chr3D 90.476 42 3 1 2736 2777 426873394 426873354 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G373500 chr1D 451243189 451246671 3482 False 6433.000000 6433 100.000000 1 3483 1 chr1D.!!$F2 3482
1 TraesCS1D01G373500 chr1D 451195072 451196716 1644 False 1520.000000 1520 83.523000 901 2552 1 chr1D.!!$F1 1651
2 TraesCS1D01G373500 chr1D 451139458 451142982 3524 False 1304.666667 3051 91.429333 2 3090 3 chr1D.!!$F3 3088
3 TraesCS1D01G373500 chr1B 619528778 619531617 2839 False 1567.500000 2850 89.520500 490 3107 2 chr1B.!!$F3 2617
4 TraesCS1D01G373500 chr1B 619535706 619537268 1562 False 1463.000000 1463 83.627000 898 2478 1 chr1B.!!$F1 1580
5 TraesCS1D01G373500 chr1B 619584908 619587482 2574 False 645.666667 1050 84.848000 1 2508 3 chr1B.!!$F5 2507
6 TraesCS1D01G373500 chr1B 619429333 619433752 4419 False 612.800000 1458 90.784400 2 2552 5 chr1B.!!$F2 2550
7 TraesCS1D01G373500 chr1B 619542667 619546181 3514 False 461.083333 1386 89.655667 1 2274 6 chr1B.!!$F4 2273
8 TraesCS1D01G373500 chr1A 545908006 545909661 1655 False 1592.000000 1592 84.229000 901 2552 1 chr1A.!!$F2 1651
9 TraesCS1D01G373500 chr1A 545895455 545898601 3146 False 819.000000 2375 92.779750 2 2813 4 chr1A.!!$F3 2811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
310 315 1.002502 ACGGCAGGGCTTTCCTTAC 60.003 57.895 0.0 0.0 45.47 2.34 F
770 1866 1.171308 GTGGTAGTACTCGTCCTGCA 58.829 55.000 0.0 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 3094 0.250124 TTGGCGTCGGTGAAGTCAAT 60.250 50.0 0.0 0.0 31.59 2.57 R
2677 5153 0.112412 AATGCCCTTTTCAGGTCGGT 59.888 50.0 0.0 0.0 38.79 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.211457 GCCACCATCATCTTCACCTCT 59.789 52.381 0.00 0.00 0.00 3.69
69 74 6.692486 TCATCTTCACCTCTCTCTAACAAAC 58.308 40.000 0.00 0.00 0.00 2.93
76 81 4.042187 ACCTCTCTCTAACAAACCTGCATT 59.958 41.667 0.00 0.00 0.00 3.56
132 137 5.946972 TGTTCTTGTTTTACTTCTTCACCCA 59.053 36.000 0.00 0.00 0.00 4.51
257 262 4.657824 ACCTTGGTGTCCGTCGCG 62.658 66.667 0.00 0.00 0.00 5.87
271 276 3.274586 CGCGGCACCATCATCCTG 61.275 66.667 0.00 0.00 0.00 3.86
310 315 1.002502 ACGGCAGGGCTTTCCTTAC 60.003 57.895 0.00 0.00 45.47 2.34
404 409 3.729356 CTCATCTGTGGTGAGGTCG 57.271 57.895 0.21 0.00 39.48 4.79
488 1355 4.159879 AGGTTTAGTCACCTCGACCTTATG 59.840 45.833 0.00 0.00 44.63 1.90
551 1418 2.368875 GAGACCTGAAGACCTTGGTGAA 59.631 50.000 0.00 0.00 32.30 3.18
552 1419 2.982488 AGACCTGAAGACCTTGGTGAAT 59.018 45.455 0.00 0.00 32.30 2.57
553 1420 3.077359 GACCTGAAGACCTTGGTGAATG 58.923 50.000 0.00 0.00 32.30 2.67
710 1592 4.193334 TGTCGATGAGCCTCCGCG 62.193 66.667 0.00 0.00 41.18 6.46
711 1593 4.194720 GTCGATGAGCCTCCGCGT 62.195 66.667 4.92 0.00 41.18 6.01
770 1866 1.171308 GTGGTAGTACTCGTCCTGCA 58.829 55.000 0.00 0.00 0.00 4.41
996 2168 4.871557 CGTCAAATTCGGAACCAACCTATA 59.128 41.667 0.00 0.00 0.00 1.31
997 2169 5.526111 CGTCAAATTCGGAACCAACCTATAT 59.474 40.000 0.00 0.00 0.00 0.86
1020 2565 6.305272 TCCTCATATAGTACGTAGGGGTAG 57.695 45.833 0.00 0.00 0.00 3.18
1022 2567 5.879223 CCTCATATAGTACGTAGGGGTAGTG 59.121 48.000 0.00 0.00 0.00 2.74
1122 2682 1.296715 GTGGTCTGAACTCCCGCAT 59.703 57.895 0.00 0.00 0.00 4.73
1183 2743 1.219393 CCACGGAGAGGCTTCTTCC 59.781 63.158 0.00 2.15 32.53 3.46
1207 2767 3.108343 CGTGGTCGCTAGTCCGAT 58.892 61.111 0.00 0.00 39.67 4.18
1397 3014 1.267806 GTTCTACACACCTTCGGACGA 59.732 52.381 0.00 0.00 0.00 4.20
1474 3091 2.225791 CTCCACCGACGATTGGCTCA 62.226 60.000 9.87 0.00 32.37 4.26
1599 3216 2.955660 TGTTTCCGAGCTTTTCATGGTT 59.044 40.909 0.00 0.00 0.00 3.67
1650 3267 1.520174 GACATCATCGCTGTCATGACG 59.480 52.381 20.54 15.64 42.08 4.35
1655 3272 3.632189 TCATCGCTGTCATGACGAATAG 58.368 45.455 20.54 13.14 39.56 1.73
1657 3274 0.855349 CGCTGTCATGACGAATAGCC 59.145 55.000 22.99 10.82 34.27 3.93
1664 3281 1.136529 CATGACGAATAGCCGCAATCG 60.137 52.381 9.91 9.91 40.90 3.34
1721 3338 1.108727 TTGCCTGAGCCACAAACTGG 61.109 55.000 0.00 0.00 44.08 4.00
1804 3421 0.787084 AGAGGACCTTGTCTCCCTCA 59.213 55.000 0.00 0.00 45.73 3.86
1914 3538 5.930569 CGTGTGGAGTGATGATGATGATAAT 59.069 40.000 0.00 0.00 0.00 1.28
1916 3540 7.359849 CGTGTGGAGTGATGATGATGATAATTC 60.360 40.741 0.00 0.00 0.00 2.17
1943 3567 1.066002 CGGAATCAATGATGTGGGCAC 59.934 52.381 0.00 0.00 0.00 5.01
2029 3653 2.349886 GAGCACGCCTTAGATGAACTTG 59.650 50.000 0.00 0.00 0.00 3.16
2030 3654 2.028112 AGCACGCCTTAGATGAACTTGA 60.028 45.455 0.00 0.00 0.00 3.02
2042 3666 5.611374 AGATGAACTTGAGAAGAAAACCGA 58.389 37.500 0.00 0.00 0.00 4.69
2046 3670 3.121544 ACTTGAGAAGAAAACCGACGAC 58.878 45.455 0.00 0.00 0.00 4.34
2050 3674 0.428618 GAAGAAAACCGACGACGACG 59.571 55.000 12.66 12.66 42.66 5.12
2077 3701 0.821301 TGAAGGCGCAACATGTTGGA 60.821 50.000 33.56 10.02 40.74 3.53
2519 4145 3.817084 AGATCGGTGATTGCCAACATATG 59.183 43.478 0.00 0.00 31.20 1.78
2521 4147 4.143986 TCGGTGATTGCCAACATATGTA 57.856 40.909 9.21 0.00 31.20 2.29
2677 5153 7.221450 AGTATATAACAAAAGGGCATTCGCTA 58.779 34.615 0.00 0.00 38.60 4.26
2693 5169 1.025113 GCTACCGACCTGAAAAGGGC 61.025 60.000 0.00 0.00 0.00 5.19
2885 5460 3.807209 GCTTGCTTTCAACTCAGGTCCTA 60.807 47.826 0.00 0.00 0.00 2.94
2888 5463 2.038557 GCTTTCAACTCAGGTCCTACCA 59.961 50.000 0.00 0.00 41.95 3.25
2889 5464 3.866449 GCTTTCAACTCAGGTCCTACCAG 60.866 52.174 0.00 0.00 41.95 4.00
2890 5465 2.992847 TCAACTCAGGTCCTACCAGA 57.007 50.000 0.00 0.00 41.95 3.86
2892 5467 2.110188 TCAACTCAGGTCCTACCAGACT 59.890 50.000 0.00 0.00 41.95 3.24
2932 5511 5.673337 TGTGTGAATTAGCAAAGAGACAC 57.327 39.130 0.00 0.00 34.40 3.67
3093 5738 1.959985 CATGCAACCCACCAAGTGTAA 59.040 47.619 0.00 0.00 0.00 2.41
3095 5740 1.341089 TGCAACCCACCAAGTGTAACA 60.341 47.619 0.00 0.00 41.43 2.41
3112 5757 2.522503 AGCAAGGCTGGCAGGAAA 59.477 55.556 17.80 0.00 37.57 3.13
3114 5759 0.543646 AGCAAGGCTGGCAGGAAAAT 60.544 50.000 17.80 0.00 37.57 1.82
3115 5760 1.185315 GCAAGGCTGGCAGGAAAATA 58.815 50.000 17.64 0.00 0.00 1.40
3117 5762 2.675032 GCAAGGCTGGCAGGAAAATAAC 60.675 50.000 17.64 0.00 0.00 1.89
3118 5763 2.562298 CAAGGCTGGCAGGAAAATAACA 59.438 45.455 17.64 0.00 0.00 2.41
3120 5765 3.444029 AGGCTGGCAGGAAAATAACATT 58.556 40.909 17.64 0.00 0.00 2.71
3121 5766 4.609301 AGGCTGGCAGGAAAATAACATTA 58.391 39.130 17.64 0.00 0.00 1.90
3122 5767 4.402474 AGGCTGGCAGGAAAATAACATTAC 59.598 41.667 17.64 0.00 0.00 1.89
3124 5769 5.592688 GGCTGGCAGGAAAATAACATTACTA 59.407 40.000 17.64 0.00 0.00 1.82
3125 5770 6.238759 GGCTGGCAGGAAAATAACATTACTAG 60.239 42.308 17.64 0.00 0.00 2.57
3126 5771 6.693315 TGGCAGGAAAATAACATTACTAGC 57.307 37.500 0.00 0.00 0.00 3.42
3128 5773 6.318648 TGGCAGGAAAATAACATTACTAGCAG 59.681 38.462 0.00 0.00 0.00 4.24
3129 5774 6.238759 GGCAGGAAAATAACATTACTAGCAGG 60.239 42.308 0.00 0.00 0.00 4.85
3130 5775 6.729187 CAGGAAAATAACATTACTAGCAGGC 58.271 40.000 0.00 0.00 0.00 4.85
3131 5776 5.527582 AGGAAAATAACATTACTAGCAGGCG 59.472 40.000 0.00 0.00 0.00 5.52
3134 5779 2.604046 AACATTACTAGCAGGCGGAG 57.396 50.000 0.00 0.00 0.00 4.63
3136 5781 0.753262 CATTACTAGCAGGCGGAGGT 59.247 55.000 0.00 0.00 0.00 3.85
3137 5782 0.753262 ATTACTAGCAGGCGGAGGTG 59.247 55.000 0.00 0.00 0.00 4.00
3139 5784 4.880537 CTAGCAGGCGGAGGTGCG 62.881 72.222 0.00 0.00 44.78 5.34
3161 5806 3.900892 CGAGCCACGCCCGTCTAT 61.901 66.667 0.00 0.00 34.51 1.98
3163 5808 1.737816 GAGCCACGCCCGTCTATTA 59.262 57.895 0.00 0.00 0.00 0.98
3164 5809 0.318784 GAGCCACGCCCGTCTATTAG 60.319 60.000 0.00 0.00 0.00 1.73
3165 5810 1.041447 AGCCACGCCCGTCTATTAGT 61.041 55.000 0.00 0.00 0.00 2.24
3166 5811 0.179092 GCCACGCCCGTCTATTAGTT 60.179 55.000 0.00 0.00 0.00 2.24
3167 5812 1.849097 CCACGCCCGTCTATTAGTTC 58.151 55.000 0.00 0.00 0.00 3.01
3168 5813 1.474017 CACGCCCGTCTATTAGTTCG 58.526 55.000 0.00 0.00 0.00 3.95
3169 5814 1.064505 CACGCCCGTCTATTAGTTCGA 59.935 52.381 10.67 0.00 0.00 3.71
3170 5815 1.952296 ACGCCCGTCTATTAGTTCGAT 59.048 47.619 10.67 0.00 0.00 3.59
3172 5817 2.287427 CGCCCGTCTATTAGTTCGATGT 60.287 50.000 10.67 0.00 0.00 3.06
3173 5818 3.714391 GCCCGTCTATTAGTTCGATGTT 58.286 45.455 10.67 0.00 0.00 2.71
3174 5819 3.489785 GCCCGTCTATTAGTTCGATGTTG 59.510 47.826 10.67 0.00 0.00 3.33
3175 5820 4.049186 CCCGTCTATTAGTTCGATGTTGG 58.951 47.826 10.67 2.81 0.00 3.77
3176 5821 3.489785 CCGTCTATTAGTTCGATGTTGGC 59.510 47.826 10.67 0.00 0.00 4.52
3177 5822 4.360563 CGTCTATTAGTTCGATGTTGGCT 58.639 43.478 0.00 0.00 0.00 4.75
3178 5823 5.506815 CCGTCTATTAGTTCGATGTTGGCTA 60.507 44.000 10.67 0.00 0.00 3.93
3179 5824 5.625721 CGTCTATTAGTTCGATGTTGGCTAG 59.374 44.000 0.00 0.00 0.00 3.42
3180 5825 5.402867 GTCTATTAGTTCGATGTTGGCTAGC 59.597 44.000 6.04 6.04 0.00 3.42
3181 5826 3.887621 TTAGTTCGATGTTGGCTAGCT 57.112 42.857 15.72 0.00 0.00 3.32
3182 5827 2.770164 AGTTCGATGTTGGCTAGCTT 57.230 45.000 15.72 0.00 0.00 3.74
3183 5828 2.622436 AGTTCGATGTTGGCTAGCTTC 58.378 47.619 15.72 6.07 0.00 3.86
3184 5829 2.028112 AGTTCGATGTTGGCTAGCTTCA 60.028 45.455 15.72 11.55 0.00 3.02
3185 5830 2.939103 GTTCGATGTTGGCTAGCTTCAT 59.061 45.455 15.72 15.56 0.00 2.57
3186 5831 3.266510 TCGATGTTGGCTAGCTTCATT 57.733 42.857 15.72 0.00 0.00 2.57
3187 5832 3.198068 TCGATGTTGGCTAGCTTCATTC 58.802 45.455 15.72 6.11 0.00 2.67
3188 5833 2.938451 CGATGTTGGCTAGCTTCATTCA 59.062 45.455 15.72 8.00 0.00 2.57
3189 5834 3.562973 CGATGTTGGCTAGCTTCATTCAT 59.437 43.478 15.72 11.94 0.00 2.57
3190 5835 4.036027 CGATGTTGGCTAGCTTCATTCATT 59.964 41.667 15.72 0.00 0.00 2.57
3191 5836 4.707030 TGTTGGCTAGCTTCATTCATTG 57.293 40.909 15.72 0.00 0.00 2.82
3192 5837 3.444742 TGTTGGCTAGCTTCATTCATTGG 59.555 43.478 15.72 0.00 0.00 3.16
3193 5838 2.026641 TGGCTAGCTTCATTCATTGGC 58.973 47.619 15.72 0.00 0.00 4.52
3194 5839 1.002033 GGCTAGCTTCATTCATTGGCG 60.002 52.381 15.72 0.00 0.00 5.69
3195 5840 1.672881 GCTAGCTTCATTCATTGGCGT 59.327 47.619 7.70 0.00 0.00 5.68
3196 5841 2.286654 GCTAGCTTCATTCATTGGCGTC 60.287 50.000 7.70 0.00 0.00 5.19
3197 5842 1.098050 AGCTTCATTCATTGGCGTCC 58.902 50.000 0.00 0.00 0.00 4.79
3198 5843 0.810648 GCTTCATTCATTGGCGTCCA 59.189 50.000 0.00 0.00 0.00 4.02
3199 5844 1.406539 GCTTCATTCATTGGCGTCCAT 59.593 47.619 0.00 0.00 31.53 3.41
3200 5845 2.797087 GCTTCATTCATTGGCGTCCATG 60.797 50.000 0.00 0.00 31.53 3.66
3201 5846 2.416680 TCATTCATTGGCGTCCATGA 57.583 45.000 0.00 0.00 31.53 3.07
3202 5847 2.934887 TCATTCATTGGCGTCCATGAT 58.065 42.857 4.44 0.00 31.53 2.45
3203 5848 3.289836 TCATTCATTGGCGTCCATGATT 58.710 40.909 4.44 0.00 31.53 2.57
3204 5849 3.700539 TCATTCATTGGCGTCCATGATTT 59.299 39.130 4.44 0.00 31.53 2.17
3205 5850 3.507103 TTCATTGGCGTCCATGATTTG 57.493 42.857 4.44 0.00 31.53 2.32
3206 5851 1.134753 TCATTGGCGTCCATGATTTGC 59.865 47.619 0.00 0.00 31.53 3.68
3207 5852 1.135527 CATTGGCGTCCATGATTTGCT 59.864 47.619 0.00 0.00 31.53 3.91
3208 5853 1.255882 TTGGCGTCCATGATTTGCTT 58.744 45.000 0.00 0.00 31.53 3.91
3209 5854 1.255882 TGGCGTCCATGATTTGCTTT 58.744 45.000 0.00 0.00 0.00 3.51
3210 5855 1.617850 TGGCGTCCATGATTTGCTTTT 59.382 42.857 0.00 0.00 0.00 2.27
3211 5856 1.994779 GGCGTCCATGATTTGCTTTTG 59.005 47.619 0.00 0.00 0.00 2.44
3212 5857 1.994779 GCGTCCATGATTTGCTTTTGG 59.005 47.619 0.00 0.00 0.00 3.28
3213 5858 2.610232 GCGTCCATGATTTGCTTTTGGT 60.610 45.455 0.00 0.00 0.00 3.67
3214 5859 3.652274 CGTCCATGATTTGCTTTTGGTT 58.348 40.909 0.00 0.00 0.00 3.67
3215 5860 4.804108 CGTCCATGATTTGCTTTTGGTTA 58.196 39.130 0.00 0.00 0.00 2.85
3216 5861 5.410067 CGTCCATGATTTGCTTTTGGTTAT 58.590 37.500 0.00 0.00 0.00 1.89
3217 5862 5.868801 CGTCCATGATTTGCTTTTGGTTATT 59.131 36.000 0.00 0.00 0.00 1.40
3218 5863 6.034898 CGTCCATGATTTGCTTTTGGTTATTC 59.965 38.462 0.00 0.00 0.00 1.75
3219 5864 6.313658 GTCCATGATTTGCTTTTGGTTATTCC 59.686 38.462 0.00 0.00 0.00 3.01
3220 5865 6.213195 TCCATGATTTGCTTTTGGTTATTCCT 59.787 34.615 0.00 0.00 37.07 3.36
3221 5866 7.398618 TCCATGATTTGCTTTTGGTTATTCCTA 59.601 33.333 0.00 0.00 37.07 2.94
3222 5867 7.707893 CCATGATTTGCTTTTGGTTATTCCTAG 59.292 37.037 0.00 0.00 37.07 3.02
3223 5868 6.630071 TGATTTGCTTTTGGTTATTCCTAGC 58.370 36.000 0.00 0.00 36.82 3.42
3224 5869 6.210385 TGATTTGCTTTTGGTTATTCCTAGCA 59.790 34.615 0.00 0.00 40.80 3.49
3225 5870 6.603940 TTTGCTTTTGGTTATTCCTAGCAT 57.396 33.333 0.00 0.00 41.47 3.79
3226 5871 6.603940 TTGCTTTTGGTTATTCCTAGCATT 57.396 33.333 0.00 0.00 41.47 3.56
3227 5872 6.603940 TGCTTTTGGTTATTCCTAGCATTT 57.396 33.333 0.00 0.00 39.18 2.32
3228 5873 7.003402 TGCTTTTGGTTATTCCTAGCATTTT 57.997 32.000 0.00 0.00 39.18 1.82
3229 5874 7.449247 TGCTTTTGGTTATTCCTAGCATTTTT 58.551 30.769 0.00 0.00 39.18 1.94
3271 5916 8.213679 ACAGTATAGTGGATGATGTAAATTGCT 58.786 33.333 12.20 0.00 0.00 3.91
3273 5918 6.889301 ATAGTGGATGATGTAAATTGCTGG 57.111 37.500 0.00 0.00 0.00 4.85
3275 5920 3.701040 GTGGATGATGTAAATTGCTGGGT 59.299 43.478 0.00 0.00 0.00 4.51
3276 5921 3.953612 TGGATGATGTAAATTGCTGGGTC 59.046 43.478 0.00 0.00 0.00 4.46
3277 5922 3.003689 GGATGATGTAAATTGCTGGGTCG 59.996 47.826 0.00 0.00 0.00 4.79
3279 5924 2.026729 TGATGTAAATTGCTGGGTCGGA 60.027 45.455 0.00 0.00 0.00 4.55
3280 5925 2.799126 TGTAAATTGCTGGGTCGGAT 57.201 45.000 0.00 0.00 0.00 4.18
3281 5926 3.916359 TGTAAATTGCTGGGTCGGATA 57.084 42.857 0.00 0.00 0.00 2.59
3282 5927 3.804036 TGTAAATTGCTGGGTCGGATAG 58.196 45.455 0.00 0.00 0.00 2.08
3283 5928 3.452990 TGTAAATTGCTGGGTCGGATAGA 59.547 43.478 0.00 0.00 0.00 1.98
3284 5929 3.644966 AAATTGCTGGGTCGGATAGAA 57.355 42.857 0.00 0.00 0.00 2.10
3285 5930 3.864789 AATTGCTGGGTCGGATAGAAT 57.135 42.857 0.00 0.00 0.00 2.40
3286 5931 3.864789 ATTGCTGGGTCGGATAGAATT 57.135 42.857 0.00 0.00 0.00 2.17
3288 5933 2.115427 TGCTGGGTCGGATAGAATTCA 58.885 47.619 8.44 0.00 0.00 2.57
3289 5934 2.503765 TGCTGGGTCGGATAGAATTCAA 59.496 45.455 8.44 0.00 0.00 2.69
3290 5935 3.136443 TGCTGGGTCGGATAGAATTCAAT 59.864 43.478 8.44 0.00 0.00 2.57
3291 5936 3.499918 GCTGGGTCGGATAGAATTCAATG 59.500 47.826 8.44 0.00 0.00 2.82
3292 5937 4.067896 CTGGGTCGGATAGAATTCAATGG 58.932 47.826 8.44 0.00 0.00 3.16
3294 5939 3.476552 GGTCGGATAGAATTCAATGGCA 58.523 45.455 8.44 0.00 0.00 4.92
3295 5940 4.074970 GGTCGGATAGAATTCAATGGCAT 58.925 43.478 8.44 0.00 0.00 4.40
3296 5941 5.245531 GGTCGGATAGAATTCAATGGCATA 58.754 41.667 8.44 0.00 0.00 3.14
3297 5942 5.122396 GGTCGGATAGAATTCAATGGCATAC 59.878 44.000 8.44 0.00 0.00 2.39
3298 5943 5.700832 GTCGGATAGAATTCAATGGCATACA 59.299 40.000 8.44 0.00 0.00 2.29
3299 5944 5.934043 TCGGATAGAATTCAATGGCATACAG 59.066 40.000 8.44 0.00 0.00 2.74
3301 5946 6.128445 CGGATAGAATTCAATGGCATACAGTC 60.128 42.308 8.44 0.00 0.00 3.51
3303 5948 3.879295 AGAATTCAATGGCATACAGTCGG 59.121 43.478 8.44 0.00 0.00 4.79
3304 5949 3.558931 ATTCAATGGCATACAGTCGGA 57.441 42.857 0.00 0.00 0.00 4.55
3305 5950 2.602257 TCAATGGCATACAGTCGGAG 57.398 50.000 0.00 0.00 0.00 4.63
3306 5951 2.107366 TCAATGGCATACAGTCGGAGA 58.893 47.619 0.00 0.00 0.00 3.71
3307 5952 2.700371 TCAATGGCATACAGTCGGAGAT 59.300 45.455 0.00 0.00 40.67 2.75
3308 5953 2.804527 CAATGGCATACAGTCGGAGATG 59.195 50.000 0.00 0.00 40.67 2.90
3309 5954 1.775385 TGGCATACAGTCGGAGATGA 58.225 50.000 0.00 0.00 40.67 2.92
3311 5956 2.700371 TGGCATACAGTCGGAGATGAAT 59.300 45.455 0.00 0.00 40.67 2.57
3312 5957 3.062763 GGCATACAGTCGGAGATGAATG 58.937 50.000 0.00 0.00 40.67 2.67
3313 5958 3.243873 GGCATACAGTCGGAGATGAATGA 60.244 47.826 0.00 0.00 40.67 2.57
3314 5959 4.371786 GCATACAGTCGGAGATGAATGAA 58.628 43.478 0.00 0.00 40.67 2.57
3315 5960 4.811024 GCATACAGTCGGAGATGAATGAAA 59.189 41.667 0.00 0.00 40.67 2.69
3317 5962 6.565435 GCATACAGTCGGAGATGAATGAAATG 60.565 42.308 0.00 3.43 40.67 2.32
3318 5963 4.194640 ACAGTCGGAGATGAATGAAATGG 58.805 43.478 0.00 0.00 40.67 3.16
3319 5964 4.194640 CAGTCGGAGATGAATGAAATGGT 58.805 43.478 0.00 0.00 40.67 3.55
3320 5965 5.104941 ACAGTCGGAGATGAATGAAATGGTA 60.105 40.000 0.00 0.00 40.67 3.25
3321 5966 5.235186 CAGTCGGAGATGAATGAAATGGTAC 59.765 44.000 0.00 0.00 40.67 3.34
3322 5967 5.104941 AGTCGGAGATGAATGAAATGGTACA 60.105 40.000 0.00 0.00 42.17 2.90
3323 5968 5.235186 GTCGGAGATGAATGAAATGGTACAG 59.765 44.000 0.00 0.00 41.12 2.74
3324 5969 7.126233 GTCGGAGATGAATGAAATGGTACAGT 61.126 42.308 0.00 0.00 41.12 3.55
3325 5970 7.897332 GTCGGAGATGAATGAAATGGTACAGTA 60.897 40.741 0.00 0.00 41.12 2.74
3339 5984 6.080648 TGGTACAGTACAGTCAACACTAAG 57.919 41.667 12.89 0.00 0.00 2.18
3340 5985 5.829391 TGGTACAGTACAGTCAACACTAAGA 59.171 40.000 12.89 0.00 0.00 2.10
3341 5986 6.016527 TGGTACAGTACAGTCAACACTAAGAG 60.017 42.308 12.89 0.00 0.00 2.85
3342 5987 5.455056 ACAGTACAGTCAACACTAAGAGG 57.545 43.478 0.00 0.00 0.00 3.69
3343 5988 4.281182 ACAGTACAGTCAACACTAAGAGGG 59.719 45.833 0.00 0.00 0.00 4.30
3344 5989 4.281182 CAGTACAGTCAACACTAAGAGGGT 59.719 45.833 0.00 0.00 29.33 4.34
3345 5990 3.753294 ACAGTCAACACTAAGAGGGTG 57.247 47.619 0.00 0.00 40.19 4.61
3346 5991 2.224305 ACAGTCAACACTAAGAGGGTGC 60.224 50.000 0.00 0.00 38.14 5.01
3347 5992 2.047061 AGTCAACACTAAGAGGGTGCA 58.953 47.619 0.00 0.00 38.14 4.57
3348 5993 2.143925 GTCAACACTAAGAGGGTGCAC 58.856 52.381 8.80 8.80 38.14 4.57
3349 5994 2.047061 TCAACACTAAGAGGGTGCACT 58.953 47.619 17.98 0.00 38.14 4.40
3350 5995 2.438021 TCAACACTAAGAGGGTGCACTT 59.562 45.455 17.98 5.50 38.14 3.16
3351 5996 2.808543 CAACACTAAGAGGGTGCACTTC 59.191 50.000 17.98 14.56 38.14 3.01
3352 5997 2.047061 ACACTAAGAGGGTGCACTTCA 58.953 47.619 17.98 0.00 38.14 3.02
3353 5998 2.639839 ACACTAAGAGGGTGCACTTCAT 59.360 45.455 17.98 10.39 38.14 2.57
3354 5999 3.838317 ACACTAAGAGGGTGCACTTCATA 59.162 43.478 17.98 10.95 38.14 2.15
3355 6000 4.081420 ACACTAAGAGGGTGCACTTCATAG 60.081 45.833 17.98 20.31 38.14 2.23
3356 6001 4.160439 CACTAAGAGGGTGCACTTCATAGA 59.840 45.833 26.04 7.85 0.00 1.98
3357 6002 3.618690 AAGAGGGTGCACTTCATAGAC 57.381 47.619 17.98 0.00 0.00 2.59
3358 6003 1.834263 AGAGGGTGCACTTCATAGACC 59.166 52.381 17.98 6.60 0.00 3.85
3359 6004 1.834263 GAGGGTGCACTTCATAGACCT 59.166 52.381 17.98 11.77 0.00 3.85
3360 6005 3.031736 GAGGGTGCACTTCATAGACCTA 58.968 50.000 17.98 0.00 0.00 3.08
3361 6006 3.034635 AGGGTGCACTTCATAGACCTAG 58.965 50.000 17.98 0.00 0.00 3.02
3362 6007 3.031736 GGGTGCACTTCATAGACCTAGA 58.968 50.000 17.98 0.00 0.00 2.43
3363 6008 3.643792 GGGTGCACTTCATAGACCTAGAT 59.356 47.826 17.98 0.00 0.00 1.98
3364 6009 4.833380 GGGTGCACTTCATAGACCTAGATA 59.167 45.833 17.98 0.00 0.00 1.98
3365 6010 5.304614 GGGTGCACTTCATAGACCTAGATAA 59.695 44.000 17.98 0.00 0.00 1.75
3366 6011 6.451393 GGTGCACTTCATAGACCTAGATAAG 58.549 44.000 17.98 0.00 0.00 1.73
3367 6012 6.265649 GGTGCACTTCATAGACCTAGATAAGA 59.734 42.308 17.98 0.00 0.00 2.10
3368 6013 7.201920 GGTGCACTTCATAGACCTAGATAAGAA 60.202 40.741 17.98 0.00 0.00 2.52
3369 6014 7.865385 GTGCACTTCATAGACCTAGATAAGAAG 59.135 40.741 10.32 0.00 37.74 2.85
3370 6015 7.780271 TGCACTTCATAGACCTAGATAAGAAGA 59.220 37.037 15.40 0.00 36.15 2.87
3371 6016 8.634444 GCACTTCATAGACCTAGATAAGAAGAA 58.366 37.037 15.40 3.09 36.15 2.52
3379 6024 8.073467 AGACCTAGATAAGAAGAAGAACTTGG 57.927 38.462 0.00 0.00 39.13 3.61
3380 6025 7.676468 AGACCTAGATAAGAAGAAGAACTTGGT 59.324 37.037 0.00 0.00 39.13 3.67
3381 6026 7.616313 ACCTAGATAAGAAGAAGAACTTGGTG 58.384 38.462 0.00 0.00 39.13 4.17
3382 6027 7.044798 CCTAGATAAGAAGAAGAACTTGGTGG 58.955 42.308 0.00 0.00 39.13 4.61
3383 6028 6.688073 AGATAAGAAGAAGAACTTGGTGGA 57.312 37.500 0.00 0.00 39.13 4.02
3384 6029 6.468543 AGATAAGAAGAAGAACTTGGTGGAC 58.531 40.000 0.00 0.00 39.13 4.02
3385 6030 4.779993 AAGAAGAAGAACTTGGTGGACT 57.220 40.909 0.00 0.00 39.13 3.85
3386 6031 4.779993 AGAAGAAGAACTTGGTGGACTT 57.220 40.909 0.00 0.00 39.13 3.01
3387 6032 4.455606 AGAAGAAGAACTTGGTGGACTTG 58.544 43.478 0.00 0.00 39.13 3.16
3388 6033 3.214696 AGAAGAACTTGGTGGACTTGG 57.785 47.619 0.00 0.00 0.00 3.61
3389 6034 2.509964 AGAAGAACTTGGTGGACTTGGT 59.490 45.455 0.00 0.00 0.00 3.67
3390 6035 2.640316 AGAACTTGGTGGACTTGGTC 57.360 50.000 0.00 0.00 0.00 4.02
3391 6036 2.127708 AGAACTTGGTGGACTTGGTCT 58.872 47.619 0.00 0.00 32.47 3.85
3392 6037 2.158755 AGAACTTGGTGGACTTGGTCTG 60.159 50.000 0.00 0.00 32.47 3.51
3393 6038 0.179018 ACTTGGTGGACTTGGTCTGC 60.179 55.000 0.00 0.00 32.47 4.26
3394 6039 0.179020 CTTGGTGGACTTGGTCTGCA 60.179 55.000 0.00 0.00 32.47 4.41
3395 6040 0.179020 TTGGTGGACTTGGTCTGCAG 60.179 55.000 7.63 7.63 32.47 4.41
3396 6041 1.344953 TGGTGGACTTGGTCTGCAGT 61.345 55.000 14.67 0.00 32.47 4.40
3397 6042 0.179018 GGTGGACTTGGTCTGCAGTT 60.179 55.000 14.67 0.00 32.47 3.16
3398 6043 1.230324 GTGGACTTGGTCTGCAGTTC 58.770 55.000 14.67 8.29 32.47 3.01
3399 6044 0.249868 TGGACTTGGTCTGCAGTTCG 60.250 55.000 14.67 1.89 32.47 3.95
3400 6045 1.569479 GGACTTGGTCTGCAGTTCGC 61.569 60.000 14.67 2.85 42.89 4.70
3411 6056 2.813779 GCAGTTCGCAAGTATCTTGG 57.186 50.000 10.76 2.75 41.79 3.61
3412 6057 2.076863 GCAGTTCGCAAGTATCTTGGT 58.923 47.619 10.76 0.00 41.79 3.67
3413 6058 2.484264 GCAGTTCGCAAGTATCTTGGTT 59.516 45.455 10.76 0.00 41.79 3.67
3414 6059 3.667960 GCAGTTCGCAAGTATCTTGGTTG 60.668 47.826 10.76 0.00 41.79 3.77
3415 6060 3.745975 CAGTTCGCAAGTATCTTGGTTGA 59.254 43.478 10.76 0.00 39.48 3.18
3416 6061 3.997021 AGTTCGCAAGTATCTTGGTTGAG 59.003 43.478 10.76 0.00 39.48 3.02
3417 6062 3.678056 TCGCAAGTATCTTGGTTGAGT 57.322 42.857 10.76 0.00 39.48 3.41
3418 6063 4.002906 TCGCAAGTATCTTGGTTGAGTT 57.997 40.909 10.76 0.00 39.48 3.01
3419 6064 3.745975 TCGCAAGTATCTTGGTTGAGTTG 59.254 43.478 10.76 0.00 39.48 3.16
3420 6065 3.667960 CGCAAGTATCTTGGTTGAGTTGC 60.668 47.826 10.76 3.71 36.53 4.17
3421 6066 3.503748 GCAAGTATCTTGGTTGAGTTGCT 59.496 43.478 10.76 0.00 36.86 3.91
3422 6067 4.022849 GCAAGTATCTTGGTTGAGTTGCTT 60.023 41.667 10.76 0.00 36.86 3.91
3423 6068 5.507985 GCAAGTATCTTGGTTGAGTTGCTTT 60.508 40.000 10.76 0.00 36.86 3.51
3424 6069 6.507023 CAAGTATCTTGGTTGAGTTGCTTTT 58.493 36.000 2.01 0.00 0.00 2.27
3425 6070 6.076981 AGTATCTTGGTTGAGTTGCTTTTG 57.923 37.500 0.00 0.00 0.00 2.44
3426 6071 5.827797 AGTATCTTGGTTGAGTTGCTTTTGA 59.172 36.000 0.00 0.00 0.00 2.69
3427 6072 5.796424 ATCTTGGTTGAGTTGCTTTTGAT 57.204 34.783 0.00 0.00 0.00 2.57
3428 6073 5.186996 TCTTGGTTGAGTTGCTTTTGATC 57.813 39.130 0.00 0.00 0.00 2.92
3429 6074 4.889409 TCTTGGTTGAGTTGCTTTTGATCT 59.111 37.500 0.00 0.00 0.00 2.75
3430 6075 4.572985 TGGTTGAGTTGCTTTTGATCTG 57.427 40.909 0.00 0.00 0.00 2.90
3431 6076 3.243501 TGGTTGAGTTGCTTTTGATCTGC 60.244 43.478 0.00 0.00 0.00 4.26
3432 6077 3.243501 GGTTGAGTTGCTTTTGATCTGCA 60.244 43.478 0.00 0.00 34.69 4.41
3433 6078 4.553323 GTTGAGTTGCTTTTGATCTGCAT 58.447 39.130 0.00 0.00 36.55 3.96
3434 6079 4.859304 TGAGTTGCTTTTGATCTGCATT 57.141 36.364 0.00 0.00 36.55 3.56
3435 6080 5.204409 TGAGTTGCTTTTGATCTGCATTT 57.796 34.783 0.00 0.00 36.55 2.32
3436 6081 5.603596 TGAGTTGCTTTTGATCTGCATTTT 58.396 33.333 0.00 0.00 36.55 1.82
3437 6082 5.693104 TGAGTTGCTTTTGATCTGCATTTTC 59.307 36.000 0.00 0.00 36.55 2.29
3438 6083 5.850614 AGTTGCTTTTGATCTGCATTTTCT 58.149 33.333 0.00 0.00 36.55 2.52
3439 6084 6.285990 AGTTGCTTTTGATCTGCATTTTCTT 58.714 32.000 0.00 0.00 36.55 2.52
3440 6085 6.202188 AGTTGCTTTTGATCTGCATTTTCTTG 59.798 34.615 0.00 0.00 36.55 3.02
3441 6086 5.603596 TGCTTTTGATCTGCATTTTCTTGT 58.396 33.333 0.00 0.00 0.00 3.16
3442 6087 5.693104 TGCTTTTGATCTGCATTTTCTTGTC 59.307 36.000 0.00 0.00 0.00 3.18
3443 6088 5.164119 GCTTTTGATCTGCATTTTCTTGTCG 60.164 40.000 0.00 0.00 0.00 4.35
3444 6089 5.437289 TTTGATCTGCATTTTCTTGTCGT 57.563 34.783 0.00 0.00 0.00 4.34
3445 6090 4.668576 TGATCTGCATTTTCTTGTCGTC 57.331 40.909 0.00 0.00 0.00 4.20
3446 6091 3.123453 TGATCTGCATTTTCTTGTCGTCG 59.877 43.478 0.00 0.00 0.00 5.12
3447 6092 2.479837 TCTGCATTTTCTTGTCGTCGT 58.520 42.857 0.00 0.00 0.00 4.34
3448 6093 2.475111 TCTGCATTTTCTTGTCGTCGTC 59.525 45.455 0.00 0.00 0.00 4.20
3449 6094 2.476619 CTGCATTTTCTTGTCGTCGTCT 59.523 45.455 0.00 0.00 0.00 4.18
3450 6095 2.869801 TGCATTTTCTTGTCGTCGTCTT 59.130 40.909 0.00 0.00 0.00 3.01
3451 6096 3.059868 TGCATTTTCTTGTCGTCGTCTTC 60.060 43.478 0.00 0.00 0.00 2.87
3452 6097 3.184581 GCATTTTCTTGTCGTCGTCTTCT 59.815 43.478 0.00 0.00 0.00 2.85
3453 6098 4.318831 GCATTTTCTTGTCGTCGTCTTCTT 60.319 41.667 0.00 0.00 0.00 2.52
3454 6099 5.366752 CATTTTCTTGTCGTCGTCTTCTTC 58.633 41.667 0.00 0.00 0.00 2.87
3455 6100 2.311450 TCTTGTCGTCGTCTTCTTCG 57.689 50.000 0.00 0.00 0.00 3.79
3456 6101 1.069432 TCTTGTCGTCGTCTTCTTCGG 60.069 52.381 0.00 0.00 0.00 4.30
3457 6102 0.946528 TTGTCGTCGTCTTCTTCGGA 59.053 50.000 0.00 0.00 0.00 4.55
3458 6103 1.162698 TGTCGTCGTCTTCTTCGGAT 58.837 50.000 0.00 0.00 0.00 4.18
3459 6104 1.135774 TGTCGTCGTCTTCTTCGGATG 60.136 52.381 0.00 0.00 0.00 3.51
3460 6105 1.129998 GTCGTCGTCTTCTTCGGATGA 59.870 52.381 0.00 0.00 0.00 2.92
3461 6106 1.397343 TCGTCGTCTTCTTCGGATGAG 59.603 52.381 0.00 0.00 30.57 2.90
3462 6107 1.397343 CGTCGTCTTCTTCGGATGAGA 59.603 52.381 0.00 0.00 30.57 3.27
3463 6108 2.537931 CGTCGTCTTCTTCGGATGAGAG 60.538 54.545 0.00 0.00 30.57 3.20
3464 6109 1.402259 TCGTCTTCTTCGGATGAGAGC 59.598 52.381 0.00 0.00 0.00 4.09
3465 6110 1.133216 CGTCTTCTTCGGATGAGAGCA 59.867 52.381 0.00 0.00 0.00 4.26
3466 6111 2.223688 CGTCTTCTTCGGATGAGAGCAT 60.224 50.000 0.00 0.00 37.47 3.79
3467 6112 3.003793 CGTCTTCTTCGGATGAGAGCATA 59.996 47.826 0.00 0.00 34.11 3.14
3468 6113 4.498177 CGTCTTCTTCGGATGAGAGCATAA 60.498 45.833 0.00 0.00 34.11 1.90
3469 6114 5.537188 GTCTTCTTCGGATGAGAGCATAAT 58.463 41.667 0.00 0.00 34.11 1.28
3470 6115 5.988561 GTCTTCTTCGGATGAGAGCATAATT 59.011 40.000 0.00 0.00 34.11 1.40
3471 6116 7.148641 GTCTTCTTCGGATGAGAGCATAATTA 58.851 38.462 0.00 0.00 34.11 1.40
3472 6117 7.816995 GTCTTCTTCGGATGAGAGCATAATTAT 59.183 37.037 0.00 0.00 34.11 1.28
3473 6118 8.370940 TCTTCTTCGGATGAGAGCATAATTATT 58.629 33.333 0.00 0.00 34.11 1.40
3474 6119 8.908786 TTCTTCGGATGAGAGCATAATTATTT 57.091 30.769 0.00 0.00 34.11 1.40
3475 6120 8.908786 TCTTCGGATGAGAGCATAATTATTTT 57.091 30.769 0.00 0.00 34.11 1.82
3476 6121 9.996554 TCTTCGGATGAGAGCATAATTATTTTA 57.003 29.630 0.00 0.00 34.11 1.52
3478 6123 8.256611 TCGGATGAGAGCATAATTATTTTAGC 57.743 34.615 0.00 0.00 34.11 3.09
3479 6124 7.063426 TCGGATGAGAGCATAATTATTTTAGCG 59.937 37.037 0.00 0.00 34.11 4.26
3480 6125 7.467623 GGATGAGAGCATAATTATTTTAGCGG 58.532 38.462 0.00 0.00 34.11 5.52
3481 6126 6.801539 TGAGAGCATAATTATTTTAGCGGG 57.198 37.500 0.00 0.00 0.00 6.13
3482 6127 5.705441 TGAGAGCATAATTATTTTAGCGGGG 59.295 40.000 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.905429 TGCTAATGCAGGTTTGTTAGAGA 58.095 39.130 6.68 0.00 45.31 3.10
76 81 1.889170 AGCGAATCGATCCTGATGCTA 59.111 47.619 6.91 0.00 28.94 3.49
132 137 6.677920 GCTTATGAGCGTTATGTGACCAAAAT 60.678 38.462 0.00 0.00 39.48 1.82
257 262 1.304282 ACCACAGGATGATGGTGCC 59.696 57.895 0.00 0.00 44.75 5.01
267 272 0.753867 TCGCAAGTTACACCACAGGA 59.246 50.000 0.00 0.00 39.48 3.86
271 276 3.064207 TCATCTTCGCAAGTTACACCAC 58.936 45.455 0.00 0.00 39.48 4.16
401 406 4.621886 GTCTGAAGTATCAAGAACCACGAC 59.378 45.833 0.00 0.00 34.49 4.34
404 409 5.784177 TCTGTCTGAAGTATCAAGAACCAC 58.216 41.667 0.00 0.00 34.49 4.16
551 1418 0.038166 AATGGCACCTTCGTCACCAT 59.962 50.000 0.00 0.00 37.50 3.55
552 1419 0.888736 CAATGGCACCTTCGTCACCA 60.889 55.000 0.00 0.00 31.42 4.17
553 1420 1.586154 CCAATGGCACCTTCGTCACC 61.586 60.000 0.00 0.00 0.00 4.02
770 1866 2.360475 GGCGAAGGGAAAGCAGCT 60.360 61.111 0.00 0.00 0.00 4.24
996 2168 5.793034 ACCCCTACGTACTATATGAGGAT 57.207 43.478 0.00 0.00 0.00 3.24
997 2169 5.787494 ACTACCCCTACGTACTATATGAGGA 59.213 44.000 0.00 0.00 0.00 3.71
1110 2670 0.108992 GTACGTCATGCGGGAGTTCA 60.109 55.000 12.85 0.00 46.52 3.18
1207 2767 1.758592 CGGAGAAACCAAGGACCCA 59.241 57.895 0.00 0.00 38.90 4.51
1474 3091 0.949105 GCGTCGGTGAAGTCAATGGT 60.949 55.000 0.00 0.00 0.00 3.55
1477 3094 0.250124 TTGGCGTCGGTGAAGTCAAT 60.250 50.000 0.00 0.00 31.59 2.57
1657 3274 0.531532 AAGATGAGAGGGCGATTGCG 60.532 55.000 0.00 0.00 44.10 4.85
1664 3281 1.971357 TCCGGATTAAGATGAGAGGGC 59.029 52.381 0.00 0.00 0.00 5.19
1721 3338 4.113354 GTCAACGATGTAGATGAAGGGAC 58.887 47.826 0.00 0.00 0.00 4.46
1914 3538 4.080919 ACATCATTGATTCCGGACTCAGAA 60.081 41.667 22.01 11.06 0.00 3.02
1916 3540 3.558829 CACATCATTGATTCCGGACTCAG 59.441 47.826 22.01 13.32 0.00 3.35
1943 3567 6.338146 TCAATATTCGTGACCTTGTCCTTAG 58.662 40.000 0.00 0.00 0.00 2.18
2029 3653 1.712877 GTCGTCGTCGGTTTTCTTCTC 59.287 52.381 1.55 0.00 37.69 2.87
2030 3654 1.763634 GTCGTCGTCGGTTTTCTTCT 58.236 50.000 1.55 0.00 37.69 2.85
2046 3670 0.366871 CGCCTTCAAGAATCACGTCG 59.633 55.000 0.00 0.00 0.00 5.12
2050 3674 1.266718 TGTTGCGCCTTCAAGAATCAC 59.733 47.619 4.18 0.00 0.00 3.06
2077 3701 6.413052 GTTCATATGGCACCTCATCATCTAT 58.587 40.000 2.13 0.00 0.00 1.98
2492 4118 3.179443 TGGCAATCACCGATCTAACTC 57.821 47.619 0.00 0.00 0.00 3.01
2576 4202 5.074584 TGAACTTACACCCAAACAAAACC 57.925 39.130 0.00 0.00 0.00 3.27
2677 5153 0.112412 AATGCCCTTTTCAGGTCGGT 59.888 50.000 0.00 0.00 38.79 4.69
2693 5169 2.688446 TGCAGTAGGTCGGTAGAGAATG 59.312 50.000 0.00 0.00 0.00 2.67
2885 5460 4.995487 GGAAACGATGACTAAAAGTCTGGT 59.005 41.667 8.42 1.65 45.27 4.00
2888 5463 6.202954 CACAAGGAAACGATGACTAAAAGTCT 59.797 38.462 8.42 0.00 45.27 3.24
2889 5464 6.018180 ACACAAGGAAACGATGACTAAAAGTC 60.018 38.462 0.01 0.01 45.26 3.01
2890 5465 5.820947 ACACAAGGAAACGATGACTAAAAGT 59.179 36.000 0.00 0.00 0.00 2.66
2892 5467 5.818336 TCACACAAGGAAACGATGACTAAAA 59.182 36.000 0.00 0.00 0.00 1.52
3095 5740 0.543646 ATTTTCCTGCCAGCCTTGCT 60.544 50.000 0.00 0.00 40.77 3.91
3108 5753 5.277828 CCGCCTGCTAGTAATGTTATTTTCC 60.278 44.000 0.00 0.00 0.00 3.13
3110 5755 5.433526 TCCGCCTGCTAGTAATGTTATTTT 58.566 37.500 0.00 0.00 0.00 1.82
3111 5756 5.031066 TCCGCCTGCTAGTAATGTTATTT 57.969 39.130 0.00 0.00 0.00 1.40
3112 5757 4.503296 CCTCCGCCTGCTAGTAATGTTATT 60.503 45.833 0.00 0.00 0.00 1.40
3114 5759 2.364324 CCTCCGCCTGCTAGTAATGTTA 59.636 50.000 0.00 0.00 0.00 2.41
3115 5760 1.139058 CCTCCGCCTGCTAGTAATGTT 59.861 52.381 0.00 0.00 0.00 2.71
3117 5762 0.753262 ACCTCCGCCTGCTAGTAATG 59.247 55.000 0.00 0.00 0.00 1.90
3118 5763 0.753262 CACCTCCGCCTGCTAGTAAT 59.247 55.000 0.00 0.00 0.00 1.89
3120 5765 2.423898 GCACCTCCGCCTGCTAGTA 61.424 63.158 0.00 0.00 0.00 1.82
3121 5766 3.775654 GCACCTCCGCCTGCTAGT 61.776 66.667 0.00 0.00 0.00 2.57
3122 5767 4.880537 CGCACCTCCGCCTGCTAG 62.881 72.222 0.00 0.00 0.00 3.42
3130 5775 4.778415 CTCGTCACCGCACCTCCG 62.778 72.222 0.00 0.00 0.00 4.63
3145 5790 0.318784 CTAATAGACGGGCGTGGCTC 60.319 60.000 0.00 0.00 0.00 4.70
3147 5792 0.179092 AACTAATAGACGGGCGTGGC 60.179 55.000 0.00 0.00 0.00 5.01
3149 5794 1.064505 TCGAACTAATAGACGGGCGTG 59.935 52.381 0.00 0.00 0.00 5.34
3150 5795 1.382522 TCGAACTAATAGACGGGCGT 58.617 50.000 0.00 0.00 0.00 5.68
3151 5796 2.287427 ACATCGAACTAATAGACGGGCG 60.287 50.000 0.00 0.00 0.00 6.13
3154 5799 3.489785 GCCAACATCGAACTAATAGACGG 59.510 47.826 0.00 0.00 0.00 4.79
3155 5800 4.360563 AGCCAACATCGAACTAATAGACG 58.639 43.478 0.00 0.00 0.00 4.18
3157 5802 5.302059 AGCTAGCCAACATCGAACTAATAGA 59.698 40.000 12.13 0.00 0.00 1.98
3158 5803 5.533482 AGCTAGCCAACATCGAACTAATAG 58.467 41.667 12.13 0.00 0.00 1.73
3159 5804 5.531122 AGCTAGCCAACATCGAACTAATA 57.469 39.130 12.13 0.00 0.00 0.98
3160 5805 4.408182 AGCTAGCCAACATCGAACTAAT 57.592 40.909 12.13 0.00 0.00 1.73
3161 5806 3.887621 AGCTAGCCAACATCGAACTAA 57.112 42.857 12.13 0.00 0.00 2.24
3163 5808 2.028112 TGAAGCTAGCCAACATCGAACT 60.028 45.455 12.13 0.00 0.00 3.01
3164 5809 2.346803 TGAAGCTAGCCAACATCGAAC 58.653 47.619 12.13 0.00 0.00 3.95
3165 5810 2.760634 TGAAGCTAGCCAACATCGAA 57.239 45.000 12.13 0.00 0.00 3.71
3166 5811 2.988010 ATGAAGCTAGCCAACATCGA 57.012 45.000 12.13 0.00 0.00 3.59
3167 5812 2.938451 TGAATGAAGCTAGCCAACATCG 59.062 45.455 12.13 0.00 0.00 3.84
3168 5813 5.279384 CAATGAATGAAGCTAGCCAACATC 58.721 41.667 12.13 5.81 0.00 3.06
3169 5814 4.098960 CCAATGAATGAAGCTAGCCAACAT 59.901 41.667 12.13 11.67 0.00 2.71
3170 5815 3.444742 CCAATGAATGAAGCTAGCCAACA 59.555 43.478 12.13 9.75 0.00 3.33
3172 5817 2.428171 GCCAATGAATGAAGCTAGCCAA 59.572 45.455 12.13 0.00 0.00 4.52
3173 5818 2.026641 GCCAATGAATGAAGCTAGCCA 58.973 47.619 12.13 3.23 0.00 4.75
3174 5819 1.002033 CGCCAATGAATGAAGCTAGCC 60.002 52.381 12.13 0.00 0.00 3.93
3175 5820 1.672881 ACGCCAATGAATGAAGCTAGC 59.327 47.619 6.62 6.62 0.00 3.42
3176 5821 2.289002 GGACGCCAATGAATGAAGCTAG 59.711 50.000 0.00 0.00 0.00 3.42
3177 5822 2.288666 GGACGCCAATGAATGAAGCTA 58.711 47.619 0.00 0.00 0.00 3.32
3178 5823 1.098050 GGACGCCAATGAATGAAGCT 58.902 50.000 0.00 0.00 0.00 3.74
3179 5824 0.810648 TGGACGCCAATGAATGAAGC 59.189 50.000 0.00 0.00 0.00 3.86
3180 5825 2.684374 TCATGGACGCCAATGAATGAAG 59.316 45.455 2.68 0.00 36.95 3.02
3181 5826 2.720915 TCATGGACGCCAATGAATGAA 58.279 42.857 2.68 0.00 36.95 2.57
3182 5827 2.416680 TCATGGACGCCAATGAATGA 57.583 45.000 2.68 0.00 36.95 2.57
3183 5828 3.720949 AATCATGGACGCCAATGAATG 57.279 42.857 0.00 0.00 36.95 2.67
3184 5829 3.738899 GCAAATCATGGACGCCAATGAAT 60.739 43.478 0.00 0.00 36.95 2.57
3185 5830 2.417107 GCAAATCATGGACGCCAATGAA 60.417 45.455 0.00 0.00 36.95 2.57
3186 5831 1.134753 GCAAATCATGGACGCCAATGA 59.865 47.619 2.68 0.00 36.95 2.57
3187 5832 1.135527 AGCAAATCATGGACGCCAATG 59.864 47.619 2.68 0.00 36.95 2.82
3188 5833 1.477553 AGCAAATCATGGACGCCAAT 58.522 45.000 2.68 0.00 36.95 3.16
3189 5834 1.255882 AAGCAAATCATGGACGCCAA 58.744 45.000 2.68 0.00 36.95 4.52
3190 5835 1.255882 AAAGCAAATCATGGACGCCA 58.744 45.000 1.01 1.01 38.19 5.69
3191 5836 1.994779 CAAAAGCAAATCATGGACGCC 59.005 47.619 0.00 0.00 0.00 5.68
3192 5837 1.994779 CCAAAAGCAAATCATGGACGC 59.005 47.619 0.00 0.00 32.82 5.19
3193 5838 3.302365 ACCAAAAGCAAATCATGGACG 57.698 42.857 0.00 0.00 35.16 4.79
3194 5839 6.313658 GGAATAACCAAAAGCAAATCATGGAC 59.686 38.462 0.00 0.00 38.79 4.02
3195 5840 6.213195 AGGAATAACCAAAAGCAAATCATGGA 59.787 34.615 0.00 0.00 42.04 3.41
3196 5841 6.408869 AGGAATAACCAAAAGCAAATCATGG 58.591 36.000 0.00 0.00 42.04 3.66
3197 5842 7.223387 GCTAGGAATAACCAAAAGCAAATCATG 59.777 37.037 0.00 0.00 42.04 3.07
3198 5843 7.093377 TGCTAGGAATAACCAAAAGCAAATCAT 60.093 33.333 0.00 0.00 43.20 2.45
3199 5844 6.210385 TGCTAGGAATAACCAAAAGCAAATCA 59.790 34.615 0.00 0.00 43.20 2.57
3200 5845 6.630071 TGCTAGGAATAACCAAAAGCAAATC 58.370 36.000 0.00 0.00 43.20 2.17
3201 5846 6.603940 TGCTAGGAATAACCAAAAGCAAAT 57.396 33.333 0.00 0.00 43.20 2.32
3202 5847 6.603940 ATGCTAGGAATAACCAAAAGCAAA 57.396 33.333 12.04 0.00 46.28 3.68
3203 5848 6.603940 AATGCTAGGAATAACCAAAAGCAA 57.396 33.333 12.04 1.38 46.28 3.91
3204 5849 6.603940 AAATGCTAGGAATAACCAAAAGCA 57.396 33.333 0.00 0.00 46.77 3.91
3205 5850 7.905604 AAAAATGCTAGGAATAACCAAAAGC 57.094 32.000 0.00 0.00 42.04 3.51
3230 5875 9.378551 CCACTATACTGTTTTCATGCTACTTAA 57.621 33.333 0.00 0.00 0.00 1.85
3231 5876 8.755028 TCCACTATACTGTTTTCATGCTACTTA 58.245 33.333 0.00 0.00 0.00 2.24
3232 5877 7.620880 TCCACTATACTGTTTTCATGCTACTT 58.379 34.615 0.00 0.00 0.00 2.24
3233 5878 7.182817 TCCACTATACTGTTTTCATGCTACT 57.817 36.000 0.00 0.00 0.00 2.57
3234 5879 7.710907 TCATCCACTATACTGTTTTCATGCTAC 59.289 37.037 0.00 0.00 0.00 3.58
3235 5880 7.791029 TCATCCACTATACTGTTTTCATGCTA 58.209 34.615 0.00 0.00 0.00 3.49
3236 5881 6.653020 TCATCCACTATACTGTTTTCATGCT 58.347 36.000 0.00 0.00 0.00 3.79
3237 5882 6.925610 TCATCCACTATACTGTTTTCATGC 57.074 37.500 0.00 0.00 0.00 4.06
3238 5883 8.442632 ACATCATCCACTATACTGTTTTCATG 57.557 34.615 0.00 0.00 0.00 3.07
3240 5885 9.952030 TTTACATCATCCACTATACTGTTTTCA 57.048 29.630 0.00 0.00 0.00 2.69
3244 5889 8.840321 GCAATTTACATCATCCACTATACTGTT 58.160 33.333 0.00 0.00 0.00 3.16
3245 5890 8.213679 AGCAATTTACATCATCCACTATACTGT 58.786 33.333 0.00 0.00 0.00 3.55
3246 5891 8.501580 CAGCAATTTACATCATCCACTATACTG 58.498 37.037 0.00 0.00 0.00 2.74
3247 5892 7.663081 CCAGCAATTTACATCATCCACTATACT 59.337 37.037 0.00 0.00 0.00 2.12
3248 5893 7.094634 CCCAGCAATTTACATCATCCACTATAC 60.095 40.741 0.00 0.00 0.00 1.47
3249 5894 6.942005 CCCAGCAATTTACATCATCCACTATA 59.058 38.462 0.00 0.00 0.00 1.31
3250 5895 5.771666 CCCAGCAATTTACATCATCCACTAT 59.228 40.000 0.00 0.00 0.00 2.12
3251 5896 5.132502 CCCAGCAATTTACATCATCCACTA 58.867 41.667 0.00 0.00 0.00 2.74
3252 5897 3.956199 CCCAGCAATTTACATCATCCACT 59.044 43.478 0.00 0.00 0.00 4.00
3253 5898 3.701040 ACCCAGCAATTTACATCATCCAC 59.299 43.478 0.00 0.00 0.00 4.02
3254 5899 3.953612 GACCCAGCAATTTACATCATCCA 59.046 43.478 0.00 0.00 0.00 3.41
3255 5900 3.003689 CGACCCAGCAATTTACATCATCC 59.996 47.826 0.00 0.00 0.00 3.51
3269 5914 2.910688 TGAATTCTATCCGACCCAGC 57.089 50.000 7.05 0.00 0.00 4.85
3271 5916 3.747388 GCCATTGAATTCTATCCGACCCA 60.747 47.826 7.05 0.00 0.00 4.51
3273 5918 3.476552 TGCCATTGAATTCTATCCGACC 58.523 45.455 7.05 0.00 0.00 4.79
3275 5920 5.863965 TGTATGCCATTGAATTCTATCCGA 58.136 37.500 7.05 0.00 0.00 4.55
3276 5921 5.702670 ACTGTATGCCATTGAATTCTATCCG 59.297 40.000 7.05 0.00 0.00 4.18
3277 5922 6.128445 CGACTGTATGCCATTGAATTCTATCC 60.128 42.308 7.05 0.00 0.00 2.59
3279 5924 5.702670 CCGACTGTATGCCATTGAATTCTAT 59.297 40.000 7.05 1.32 0.00 1.98
3280 5925 5.056480 CCGACTGTATGCCATTGAATTCTA 58.944 41.667 7.05 0.00 0.00 2.10
3281 5926 3.879295 CCGACTGTATGCCATTGAATTCT 59.121 43.478 7.05 0.00 0.00 2.40
3282 5927 3.876914 TCCGACTGTATGCCATTGAATTC 59.123 43.478 0.00 0.00 0.00 2.17
3283 5928 3.879295 CTCCGACTGTATGCCATTGAATT 59.121 43.478 0.00 0.00 0.00 2.17
3284 5929 3.134623 TCTCCGACTGTATGCCATTGAAT 59.865 43.478 0.00 0.00 0.00 2.57
3285 5930 2.499693 TCTCCGACTGTATGCCATTGAA 59.500 45.455 0.00 0.00 0.00 2.69
3286 5931 2.107366 TCTCCGACTGTATGCCATTGA 58.893 47.619 0.00 0.00 0.00 2.57
3288 5933 2.700371 TCATCTCCGACTGTATGCCATT 59.300 45.455 0.00 0.00 0.00 3.16
3289 5934 2.319844 TCATCTCCGACTGTATGCCAT 58.680 47.619 0.00 0.00 0.00 4.40
3290 5935 1.775385 TCATCTCCGACTGTATGCCA 58.225 50.000 0.00 0.00 0.00 4.92
3291 5936 2.890808 TTCATCTCCGACTGTATGCC 57.109 50.000 0.00 0.00 0.00 4.40
3292 5937 3.982475 TCATTCATCTCCGACTGTATGC 58.018 45.455 0.00 0.00 0.00 3.14
3294 5939 5.994054 CCATTTCATTCATCTCCGACTGTAT 59.006 40.000 0.00 0.00 0.00 2.29
3295 5940 5.104941 ACCATTTCATTCATCTCCGACTGTA 60.105 40.000 0.00 0.00 0.00 2.74
3296 5941 4.194640 CCATTTCATTCATCTCCGACTGT 58.805 43.478 0.00 0.00 0.00 3.55
3297 5942 4.194640 ACCATTTCATTCATCTCCGACTG 58.805 43.478 0.00 0.00 0.00 3.51
3298 5943 4.494091 ACCATTTCATTCATCTCCGACT 57.506 40.909 0.00 0.00 0.00 4.18
3299 5944 5.116180 TGTACCATTTCATTCATCTCCGAC 58.884 41.667 0.00 0.00 0.00 4.79
3301 5946 5.118990 ACTGTACCATTTCATTCATCTCCG 58.881 41.667 0.00 0.00 0.00 4.63
3303 5948 7.766278 ACTGTACTGTACCATTTCATTCATCTC 59.234 37.037 14.91 0.00 0.00 2.75
3304 5949 7.624549 ACTGTACTGTACCATTTCATTCATCT 58.375 34.615 14.91 0.00 0.00 2.90
3305 5950 7.549134 TGACTGTACTGTACCATTTCATTCATC 59.451 37.037 14.91 0.00 0.00 2.92
3306 5951 7.394016 TGACTGTACTGTACCATTTCATTCAT 58.606 34.615 14.91 0.00 0.00 2.57
3307 5952 6.764379 TGACTGTACTGTACCATTTCATTCA 58.236 36.000 14.91 3.31 0.00 2.57
3308 5953 7.172532 TGTTGACTGTACTGTACCATTTCATTC 59.827 37.037 14.91 8.67 0.00 2.67
3309 5954 6.995686 TGTTGACTGTACTGTACCATTTCATT 59.004 34.615 14.91 0.00 0.00 2.57
3311 5956 5.756347 GTGTTGACTGTACTGTACCATTTCA 59.244 40.000 14.91 9.02 0.00 2.69
3312 5957 5.989777 AGTGTTGACTGTACTGTACCATTTC 59.010 40.000 14.91 6.83 0.00 2.17
3313 5958 5.925509 AGTGTTGACTGTACTGTACCATTT 58.074 37.500 14.91 0.00 0.00 2.32
3314 5959 5.546621 AGTGTTGACTGTACTGTACCATT 57.453 39.130 14.91 0.00 0.00 3.16
3315 5960 6.492429 TCTTAGTGTTGACTGTACTGTACCAT 59.508 38.462 14.91 3.33 33.21 3.55
3317 5962 6.323203 TCTTAGTGTTGACTGTACTGTACC 57.677 41.667 14.91 1.09 33.21 3.34
3318 5963 6.380190 CCTCTTAGTGTTGACTGTACTGTAC 58.620 44.000 10.98 10.98 33.21 2.90
3319 5964 5.475909 CCCTCTTAGTGTTGACTGTACTGTA 59.524 44.000 5.27 0.00 33.21 2.74
3320 5965 4.281182 CCCTCTTAGTGTTGACTGTACTGT 59.719 45.833 4.92 4.92 33.21 3.55
3321 5966 4.281182 ACCCTCTTAGTGTTGACTGTACTG 59.719 45.833 0.00 0.00 33.21 2.74
3322 5967 4.281182 CACCCTCTTAGTGTTGACTGTACT 59.719 45.833 0.00 0.00 33.21 2.73
3323 5968 4.557205 CACCCTCTTAGTGTTGACTGTAC 58.443 47.826 0.00 0.00 33.21 2.90
3324 5969 3.006537 GCACCCTCTTAGTGTTGACTGTA 59.993 47.826 0.00 0.00 37.56 2.74
3325 5970 2.224305 GCACCCTCTTAGTGTTGACTGT 60.224 50.000 0.00 0.00 37.56 3.55
3326 5971 2.224281 TGCACCCTCTTAGTGTTGACTG 60.224 50.000 0.00 0.00 37.56 3.51
3327 5972 2.047061 TGCACCCTCTTAGTGTTGACT 58.953 47.619 0.00 0.00 37.56 3.41
3328 5973 2.143925 GTGCACCCTCTTAGTGTTGAC 58.856 52.381 5.22 0.00 37.56 3.18
3329 5974 2.047061 AGTGCACCCTCTTAGTGTTGA 58.953 47.619 14.63 0.00 37.56 3.18
3330 5975 2.550830 AGTGCACCCTCTTAGTGTTG 57.449 50.000 14.63 0.00 37.56 3.33
3331 5976 2.438021 TGAAGTGCACCCTCTTAGTGTT 59.562 45.455 14.63 0.00 37.56 3.32
3332 5977 2.047061 TGAAGTGCACCCTCTTAGTGT 58.953 47.619 14.63 0.00 37.56 3.55
3333 5978 2.839486 TGAAGTGCACCCTCTTAGTG 57.161 50.000 14.63 0.00 38.30 2.74
3334 5979 4.160626 GTCTATGAAGTGCACCCTCTTAGT 59.839 45.833 24.21 11.23 0.00 2.24
3335 5980 4.442192 GGTCTATGAAGTGCACCCTCTTAG 60.442 50.000 21.76 21.76 0.00 2.18
3336 5981 3.451178 GGTCTATGAAGTGCACCCTCTTA 59.549 47.826 14.63 11.71 0.00 2.10
3337 5982 2.237392 GGTCTATGAAGTGCACCCTCTT 59.763 50.000 14.63 11.19 0.00 2.85
3338 5983 1.834263 GGTCTATGAAGTGCACCCTCT 59.166 52.381 14.63 0.00 0.00 3.69
3339 5984 1.834263 AGGTCTATGAAGTGCACCCTC 59.166 52.381 14.63 11.41 0.00 4.30
3340 5985 1.958288 AGGTCTATGAAGTGCACCCT 58.042 50.000 14.63 7.24 0.00 4.34
3341 5986 3.031736 TCTAGGTCTATGAAGTGCACCC 58.968 50.000 14.63 6.56 0.00 4.61
3342 5987 4.946478 ATCTAGGTCTATGAAGTGCACC 57.054 45.455 14.63 0.00 0.00 5.01
3343 5988 7.278461 TCTTATCTAGGTCTATGAAGTGCAC 57.722 40.000 9.40 9.40 0.00 4.57
3344 5989 7.780271 TCTTCTTATCTAGGTCTATGAAGTGCA 59.220 37.037 15.22 0.00 33.83 4.57
3345 5990 8.172352 TCTTCTTATCTAGGTCTATGAAGTGC 57.828 38.462 15.22 0.00 33.83 4.40
3353 5998 9.191479 CCAAGTTCTTCTTCTTATCTAGGTCTA 57.809 37.037 0.00 0.00 33.63 2.59
3354 5999 7.676468 ACCAAGTTCTTCTTCTTATCTAGGTCT 59.324 37.037 0.00 0.00 33.63 3.85
3355 6000 7.762159 CACCAAGTTCTTCTTCTTATCTAGGTC 59.238 40.741 0.00 0.00 33.63 3.85
3356 6001 7.310734 CCACCAAGTTCTTCTTCTTATCTAGGT 60.311 40.741 0.00 0.00 33.63 3.08
3357 6002 7.044798 CCACCAAGTTCTTCTTCTTATCTAGG 58.955 42.308 0.00 0.00 33.63 3.02
3358 6003 7.762159 GTCCACCAAGTTCTTCTTCTTATCTAG 59.238 40.741 0.00 0.00 33.63 2.43
3359 6004 7.455008 AGTCCACCAAGTTCTTCTTCTTATCTA 59.545 37.037 0.00 0.00 33.63 1.98
3360 6005 6.271159 AGTCCACCAAGTTCTTCTTCTTATCT 59.729 38.462 0.00 0.00 33.63 1.98
3361 6006 6.468543 AGTCCACCAAGTTCTTCTTCTTATC 58.531 40.000 0.00 0.00 33.63 1.75
3362 6007 6.441088 AGTCCACCAAGTTCTTCTTCTTAT 57.559 37.500 0.00 0.00 33.63 1.73
3363 6008 5.888982 AGTCCACCAAGTTCTTCTTCTTA 57.111 39.130 0.00 0.00 33.63 2.10
3364 6009 4.779993 AGTCCACCAAGTTCTTCTTCTT 57.220 40.909 0.00 0.00 33.63 2.52
3365 6010 4.455606 CAAGTCCACCAAGTTCTTCTTCT 58.544 43.478 0.00 0.00 33.63 2.85
3366 6011 3.565902 CCAAGTCCACCAAGTTCTTCTTC 59.434 47.826 0.00 0.00 33.63 2.87
3367 6012 3.053619 ACCAAGTCCACCAAGTTCTTCTT 60.054 43.478 0.00 0.00 36.75 2.52
3368 6013 2.509964 ACCAAGTCCACCAAGTTCTTCT 59.490 45.455 0.00 0.00 0.00 2.85
3369 6014 2.879026 GACCAAGTCCACCAAGTTCTTC 59.121 50.000 0.00 0.00 0.00 2.87
3370 6015 2.509964 AGACCAAGTCCACCAAGTTCTT 59.490 45.455 0.00 0.00 32.18 2.52
3371 6016 2.127708 AGACCAAGTCCACCAAGTTCT 58.872 47.619 0.00 0.00 32.18 3.01
3372 6017 2.222027 CAGACCAAGTCCACCAAGTTC 58.778 52.381 0.00 0.00 32.18 3.01
3373 6018 1.750682 GCAGACCAAGTCCACCAAGTT 60.751 52.381 0.00 0.00 32.18 2.66
3374 6019 0.179018 GCAGACCAAGTCCACCAAGT 60.179 55.000 0.00 0.00 32.18 3.16
3375 6020 0.179020 TGCAGACCAAGTCCACCAAG 60.179 55.000 0.00 0.00 32.18 3.61
3376 6021 0.179020 CTGCAGACCAAGTCCACCAA 60.179 55.000 8.42 0.00 32.18 3.67
3377 6022 1.344953 ACTGCAGACCAAGTCCACCA 61.345 55.000 23.35 0.00 32.18 4.17
3378 6023 0.179018 AACTGCAGACCAAGTCCACC 60.179 55.000 23.35 0.00 32.18 4.61
3379 6024 1.230324 GAACTGCAGACCAAGTCCAC 58.770 55.000 23.35 0.00 32.18 4.02
3380 6025 0.249868 CGAACTGCAGACCAAGTCCA 60.250 55.000 23.35 0.00 32.18 4.02
3381 6026 1.569479 GCGAACTGCAGACCAAGTCC 61.569 60.000 23.35 0.00 45.45 3.85
3382 6027 1.862806 GCGAACTGCAGACCAAGTC 59.137 57.895 23.35 6.48 45.45 3.01
3383 6028 4.049393 GCGAACTGCAGACCAAGT 57.951 55.556 23.35 0.00 45.45 3.16
3392 6037 2.076863 ACCAAGATACTTGCGAACTGC 58.923 47.619 6.04 0.00 46.70 4.40
3393 6038 3.745975 TCAACCAAGATACTTGCGAACTG 59.254 43.478 6.04 0.27 0.00 3.16
3394 6039 3.997021 CTCAACCAAGATACTTGCGAACT 59.003 43.478 6.04 0.00 0.00 3.01
3395 6040 3.746492 ACTCAACCAAGATACTTGCGAAC 59.254 43.478 6.04 0.00 0.00 3.95
3396 6041 4.002906 ACTCAACCAAGATACTTGCGAA 57.997 40.909 6.04 0.00 0.00 4.70
3397 6042 3.678056 ACTCAACCAAGATACTTGCGA 57.322 42.857 6.04 2.45 0.00 5.10
3398 6043 3.667960 GCAACTCAACCAAGATACTTGCG 60.668 47.826 6.04 3.15 0.00 4.85
3399 6044 3.503748 AGCAACTCAACCAAGATACTTGC 59.496 43.478 6.04 0.00 34.32 4.01
3400 6045 5.695851 AAGCAACTCAACCAAGATACTTG 57.304 39.130 4.73 4.73 0.00 3.16
3401 6046 6.321181 TCAAAAGCAACTCAACCAAGATACTT 59.679 34.615 0.00 0.00 0.00 2.24
3402 6047 5.827797 TCAAAAGCAACTCAACCAAGATACT 59.172 36.000 0.00 0.00 0.00 2.12
3403 6048 6.072112 TCAAAAGCAACTCAACCAAGATAC 57.928 37.500 0.00 0.00 0.00 2.24
3404 6049 6.716628 AGATCAAAAGCAACTCAACCAAGATA 59.283 34.615 0.00 0.00 0.00 1.98
3405 6050 5.537674 AGATCAAAAGCAACTCAACCAAGAT 59.462 36.000 0.00 0.00 0.00 2.40
3406 6051 4.889409 AGATCAAAAGCAACTCAACCAAGA 59.111 37.500 0.00 0.00 0.00 3.02
3407 6052 4.980434 CAGATCAAAAGCAACTCAACCAAG 59.020 41.667 0.00 0.00 0.00 3.61
3408 6053 4.737352 GCAGATCAAAAGCAACTCAACCAA 60.737 41.667 0.00 0.00 0.00 3.67
3409 6054 3.243501 GCAGATCAAAAGCAACTCAACCA 60.244 43.478 0.00 0.00 0.00 3.67
3410 6055 3.243501 TGCAGATCAAAAGCAACTCAACC 60.244 43.478 0.00 0.00 34.97 3.77
3411 6056 3.968649 TGCAGATCAAAAGCAACTCAAC 58.031 40.909 0.00 0.00 34.97 3.18
3412 6057 4.859304 ATGCAGATCAAAAGCAACTCAA 57.141 36.364 6.31 0.00 42.15 3.02
3413 6058 4.859304 AATGCAGATCAAAAGCAACTCA 57.141 36.364 6.31 0.00 42.15 3.41
3414 6059 5.924825 AGAAAATGCAGATCAAAAGCAACTC 59.075 36.000 6.31 4.44 42.15 3.01
3415 6060 5.850614 AGAAAATGCAGATCAAAAGCAACT 58.149 33.333 6.31 2.85 42.15 3.16
3416 6061 6.018507 ACAAGAAAATGCAGATCAAAAGCAAC 60.019 34.615 6.31 1.13 42.15 4.17
3417 6062 6.050432 ACAAGAAAATGCAGATCAAAAGCAA 58.950 32.000 6.31 0.00 42.15 3.91
3418 6063 5.603596 ACAAGAAAATGCAGATCAAAAGCA 58.396 33.333 0.00 0.00 43.14 3.91
3419 6064 5.164119 CGACAAGAAAATGCAGATCAAAAGC 60.164 40.000 0.00 0.00 0.00 3.51
3420 6065 5.916883 ACGACAAGAAAATGCAGATCAAAAG 59.083 36.000 0.00 0.00 0.00 2.27
3421 6066 5.830912 ACGACAAGAAAATGCAGATCAAAA 58.169 33.333 0.00 0.00 0.00 2.44
3422 6067 5.437289 ACGACAAGAAAATGCAGATCAAA 57.563 34.783 0.00 0.00 0.00 2.69
3423 6068 4.377328 CGACGACAAGAAAATGCAGATCAA 60.377 41.667 0.00 0.00 0.00 2.57
3424 6069 3.123453 CGACGACAAGAAAATGCAGATCA 59.877 43.478 0.00 0.00 0.00 2.92
3425 6070 3.123621 ACGACGACAAGAAAATGCAGATC 59.876 43.478 0.00 0.00 0.00 2.75
3426 6071 3.067106 ACGACGACAAGAAAATGCAGAT 58.933 40.909 0.00 0.00 0.00 2.90
3427 6072 2.475111 GACGACGACAAGAAAATGCAGA 59.525 45.455 0.00 0.00 0.00 4.26
3428 6073 2.476619 AGACGACGACAAGAAAATGCAG 59.523 45.455 0.00 0.00 0.00 4.41
3429 6074 2.479837 AGACGACGACAAGAAAATGCA 58.520 42.857 0.00 0.00 0.00 3.96
3430 6075 3.184581 AGAAGACGACGACAAGAAAATGC 59.815 43.478 0.00 0.00 0.00 3.56
3431 6076 4.974103 AGAAGACGACGACAAGAAAATG 57.026 40.909 0.00 0.00 0.00 2.32
3432 6077 4.148348 CGAAGAAGACGACGACAAGAAAAT 59.852 41.667 0.00 0.00 0.00 1.82
3433 6078 3.484649 CGAAGAAGACGACGACAAGAAAA 59.515 43.478 0.00 0.00 0.00 2.29
3434 6079 3.040795 CGAAGAAGACGACGACAAGAAA 58.959 45.455 0.00 0.00 0.00 2.52
3435 6080 2.603892 CCGAAGAAGACGACGACAAGAA 60.604 50.000 0.00 0.00 0.00 2.52
3436 6081 1.069432 CCGAAGAAGACGACGACAAGA 60.069 52.381 0.00 0.00 0.00 3.02
3437 6082 1.069432 TCCGAAGAAGACGACGACAAG 60.069 52.381 0.00 0.00 0.00 3.16
3438 6083 0.946528 TCCGAAGAAGACGACGACAA 59.053 50.000 0.00 0.00 0.00 3.18
3439 6084 1.135774 CATCCGAAGAAGACGACGACA 60.136 52.381 0.00 0.00 0.00 4.35
3440 6085 1.129998 TCATCCGAAGAAGACGACGAC 59.870 52.381 0.00 0.00 0.00 4.34
3441 6086 1.397343 CTCATCCGAAGAAGACGACGA 59.603 52.381 0.00 0.00 0.00 4.20
3442 6087 1.397343 TCTCATCCGAAGAAGACGACG 59.603 52.381 0.00 0.00 0.00 5.12
3443 6088 2.793237 GCTCTCATCCGAAGAAGACGAC 60.793 54.545 0.00 0.00 0.00 4.34
3444 6089 1.402259 GCTCTCATCCGAAGAAGACGA 59.598 52.381 0.00 0.00 0.00 4.20
3445 6090 1.133216 TGCTCTCATCCGAAGAAGACG 59.867 52.381 0.00 0.00 0.00 4.18
3446 6091 2.949451 TGCTCTCATCCGAAGAAGAC 57.051 50.000 0.00 0.00 0.00 3.01
3447 6092 5.798125 ATTATGCTCTCATCCGAAGAAGA 57.202 39.130 0.00 0.00 34.22 2.87
3448 6093 8.545229 AATAATTATGCTCTCATCCGAAGAAG 57.455 34.615 0.00 0.00 34.22 2.85
3449 6094 8.908786 AAATAATTATGCTCTCATCCGAAGAA 57.091 30.769 0.00 0.00 34.22 2.52
3450 6095 8.908786 AAAATAATTATGCTCTCATCCGAAGA 57.091 30.769 0.00 0.00 34.22 2.87
3452 6097 8.721478 GCTAAAATAATTATGCTCTCATCCGAA 58.279 33.333 0.00 0.00 34.22 4.30
3453 6098 7.063426 CGCTAAAATAATTATGCTCTCATCCGA 59.937 37.037 0.00 0.00 34.22 4.55
3454 6099 7.176075 CGCTAAAATAATTATGCTCTCATCCG 58.824 38.462 0.00 0.00 34.22 4.18
3455 6100 7.414540 CCCGCTAAAATAATTATGCTCTCATCC 60.415 40.741 0.00 0.00 34.22 3.51
3456 6101 7.414540 CCCCGCTAAAATAATTATGCTCTCATC 60.415 40.741 0.00 0.00 34.22 2.92
3457 6102 6.375455 CCCCGCTAAAATAATTATGCTCTCAT 59.625 38.462 0.00 0.00 36.73 2.90
3458 6103 5.705441 CCCCGCTAAAATAATTATGCTCTCA 59.295 40.000 0.00 0.00 0.00 3.27
3459 6104 6.183309 CCCCGCTAAAATAATTATGCTCTC 57.817 41.667 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.