Multiple sequence alignment - TraesCS1D01G372300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G372300 chr1D 100.000 8678 0 0 1 8678 450232602 450223925 0.000000e+00 16026.0
1 TraesCS1D01G372300 chr1D 95.402 174 5 2 6326 6497 178466480 178466308 3.090000e-69 274.0
2 TraesCS1D01G372300 chr1A 95.156 4211 136 24 2154 6340 545533785 545529619 0.000000e+00 6584.0
3 TraesCS1D01G372300 chr1A 91.724 2199 118 28 6501 8678 545529619 545527464 0.000000e+00 2994.0
4 TraesCS1D01G372300 chr1A 93.158 877 48 6 889 1761 545534760 545533892 0.000000e+00 1277.0
5 TraesCS1D01G372300 chr1A 100.000 29 0 0 7865 7893 545527277 545527249 4.000000e-03 54.7
6 TraesCS1D01G372300 chr1B 97.522 3470 67 4 2873 6338 617828542 617825088 0.000000e+00 5914.0
7 TraesCS1D01G372300 chr1B 92.051 1711 83 19 6499 8201 617825085 617823420 0.000000e+00 2357.0
8 TraesCS1D01G372300 chr1B 96.269 1233 33 7 932 2157 617830746 617829520 0.000000e+00 2010.0
9 TraesCS1D01G372300 chr1B 95.973 745 23 4 2154 2893 617829465 617828723 0.000000e+00 1203.0
10 TraesCS1D01G372300 chr1B 90.691 752 60 7 87 830 617831518 617830769 0.000000e+00 992.0
11 TraesCS1D01G372300 chr1B 96.180 445 12 3 8238 8678 617823417 617822974 0.000000e+00 723.0
12 TraesCS1D01G372300 chr1B 96.491 57 2 0 659 715 179047196 179047140 2.580000e-15 95.3
13 TraesCS1D01G372300 chr1B 93.548 62 4 0 660 721 25799308 25799369 9.280000e-15 93.5
14 TraesCS1D01G372300 chr4A 84.882 635 85 9 1 630 599912927 599912299 1.590000e-176 630.0
15 TraesCS1D01G372300 chr4A 84.528 614 76 15 21 627 715709688 715709087 2.700000e-164 590.0
16 TraesCS1D01G372300 chr4A 93.548 62 3 1 659 720 3217683 3217743 3.340000e-14 91.6
17 TraesCS1D01G372300 chr6D 84.094 635 88 12 1 627 19355754 19355125 1.250000e-167 601.0
18 TraesCS1D01G372300 chr6D 83.176 636 74 18 1 632 103605853 103605247 1.270000e-152 551.0
19 TraesCS1D01G372300 chr6D 95.402 174 6 1 6330 6501 392896968 392897141 8.580000e-70 276.0
20 TraesCS1D01G372300 chr6D 93.956 182 8 2 6323 6502 270689333 270689513 1.110000e-68 272.0
21 TraesCS1D01G372300 chr6D 88.372 172 15 2 723 891 464441556 464441387 1.480000e-47 202.0
22 TraesCS1D01G372300 chr4D 84.694 588 76 12 8 591 261077729 261078306 7.560000e-160 575.0
23 TraesCS1D01G372300 chr5D 84.497 587 78 11 8 591 47328192 47328768 1.260000e-157 568.0
24 TraesCS1D01G372300 chr5D 95.954 173 5 1 6337 6507 92111713 92111541 6.630000e-71 279.0
25 TraesCS1D01G372300 chr5D 88.701 177 14 3 723 895 2689274 2689100 2.450000e-50 211.0
26 TraesCS1D01G372300 chr5D 87.571 177 16 4 723 895 543670888 543670714 5.310000e-47 200.0
27 TraesCS1D01G372300 chr6A 83.123 634 75 19 1 630 124721477 124720872 4.580000e-152 549.0
28 TraesCS1D01G372300 chr3A 81.681 595 97 10 26 613 741604800 741605389 1.310000e-132 484.0
29 TraesCS1D01G372300 chr2B 95.930 172 5 1 6337 6506 174794822 174794993 2.390000e-70 278.0
30 TraesCS1D01G372300 chr2B 92.754 69 5 0 653 721 76105999 76106067 5.540000e-17 100.0
31 TraesCS1D01G372300 chr5B 93.158 190 7 5 6334 6517 427931370 427931181 3.090000e-69 274.0
32 TraesCS1D01G372300 chr5B 88.824 170 13 5 726 891 572341214 572341047 4.110000e-48 204.0
33 TraesCS1D01G372300 chr5B 89.706 68 7 0 655 722 522847136 522847069 4.320000e-13 87.9
34 TraesCS1D01G372300 chrUn 92.593 189 8 5 6334 6519 74544603 74544788 5.160000e-67 267.0
35 TraesCS1D01G372300 chrUn 93.750 64 4 0 659 722 19194226 19194163 7.170000e-16 97.1
36 TraesCS1D01G372300 chr3B 91.753 194 8 6 6307 6497 543215348 543215536 6.680000e-66 263.0
37 TraesCS1D01G372300 chr7B 91.237 194 13 3 6334 6525 702173124 702173315 2.400000e-65 261.0
38 TraesCS1D01G372300 chr7B 93.750 64 4 0 659 722 610743751 610743814 7.170000e-16 97.1
39 TraesCS1D01G372300 chr7A 87.255 204 21 5 426 627 377633559 377633759 2.440000e-55 228.0
40 TraesCS1D01G372300 chr7A 85.294 204 25 5 426 627 418192792 418192592 1.140000e-48 206.0
41 TraesCS1D01G372300 chr5A 88.636 176 14 3 723 894 458978946 458978773 8.830000e-50 209.0
42 TraesCS1D01G372300 chr5A 89.017 173 14 2 723 892 647359724 647359554 8.830000e-50 209.0
43 TraesCS1D01G372300 chr2A 88.636 176 13 4 723 893 729555073 729555246 3.180000e-49 207.0
44 TraesCS1D01G372300 chr3D 88.506 174 14 3 723 892 523207751 523207922 1.140000e-48 206.0
45 TraesCS1D01G372300 chr2D 91.429 70 6 0 658 727 422077260 422077329 7.170000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G372300 chr1D 450223925 450232602 8677 True 16026.000000 16026 100.0000 1 8678 1 chr1D.!!$R2 8677
1 TraesCS1D01G372300 chr1A 545527249 545534760 7511 True 2727.425000 6584 95.0095 889 8678 4 chr1A.!!$R1 7789
2 TraesCS1D01G372300 chr1B 617822974 617831518 8544 True 2199.833333 5914 94.7810 87 8678 6 chr1B.!!$R2 8591
3 TraesCS1D01G372300 chr4A 599912299 599912927 628 True 630.000000 630 84.8820 1 630 1 chr4A.!!$R1 629
4 TraesCS1D01G372300 chr4A 715709087 715709688 601 True 590.000000 590 84.5280 21 627 1 chr4A.!!$R2 606
5 TraesCS1D01G372300 chr6D 19355125 19355754 629 True 601.000000 601 84.0940 1 627 1 chr6D.!!$R1 626
6 TraesCS1D01G372300 chr6D 103605247 103605853 606 True 551.000000 551 83.1760 1 632 1 chr6D.!!$R2 631
7 TraesCS1D01G372300 chr4D 261077729 261078306 577 False 575.000000 575 84.6940 8 591 1 chr4D.!!$F1 583
8 TraesCS1D01G372300 chr5D 47328192 47328768 576 False 568.000000 568 84.4970 8 591 1 chr5D.!!$F1 583
9 TraesCS1D01G372300 chr6A 124720872 124721477 605 True 549.000000 549 83.1230 1 630 1 chr6A.!!$R1 629
10 TraesCS1D01G372300 chr3A 741604800 741605389 589 False 484.000000 484 81.6810 26 613 1 chr3A.!!$F1 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 859 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02 F
855 873 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06 F
2723 2813 0.600557 AGAAGTGCCTCAGACTGTCG 59.399 55.000 1.59 0.00 0.00 4.35 F
3682 3975 0.978146 ACCGCTCCTTGTATCAGGCT 60.978 55.000 0.00 0.00 33.35 4.58 F
3844 4137 1.200519 TTACTCGGCTGGTTATGGCT 58.799 50.000 0.00 0.00 0.00 4.75 F
5292 5585 1.376466 GAAGGTCCTGAAGGCTGCA 59.624 57.895 0.50 0.00 34.44 4.41 F
5794 6087 0.323178 AAGTCCAGCTCCAGCAATGG 60.323 55.000 0.48 0.89 45.16 3.16 F
7134 7456 1.062488 AACTCTGAAGGTGCCAGGGT 61.062 55.000 0.00 0.00 46.52 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2705 2795 0.315568 ACGACAGTCTGAGGCACTTC 59.684 55.000 6.91 0.00 41.55 3.01 R
2785 2875 1.664659 CAACAACGTAACCACCAACGA 59.335 47.619 1.45 0.00 41.55 3.85 R
4626 4919 0.804544 CAATTGCTGCGGAATGCCAG 60.805 55.000 0.00 0.00 45.60 4.85 R
5292 5585 4.850193 CCAGGAGTTGGTGCCAAT 57.150 55.556 6.95 0.00 42.41 3.16 R
5688 5981 1.547675 CCCATTCCCATACCCATTCCG 60.548 57.143 0.00 0.00 0.00 4.30 R
6483 6796 0.698818 AAAATGCTCCCTCCGTTCCT 59.301 50.000 0.00 0.00 0.00 3.36 R
7604 7934 2.035321 TCAGTGTCATAACTCGTGTGCA 59.965 45.455 0.00 0.00 0.00 4.57 R
8072 8417 0.944311 GCTCGTTTCCTGAAGCACGA 60.944 55.000 6.63 6.63 39.27 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.557869 TGTTAGGAGGCCCTGTATTGT 58.442 47.619 0.00 0.00 44.15 2.71
54 55 6.527057 TTCTACAGACTAAAAGGAGTAGCC 57.473 41.667 0.00 0.00 31.47 3.93
72 73 7.063426 GGAGTAGCCAAAAATATTTGTGCTTTC 59.937 37.037 18.69 16.30 43.93 2.62
199 205 8.044060 TCTTTGCTCGAGAATACATCAATTTT 57.956 30.769 18.75 0.00 0.00 1.82
263 273 5.806654 AGAATCAAGGAATAGAGAGAGCC 57.193 43.478 0.00 0.00 0.00 4.70
398 410 3.427503 CCACATTTCCGGATTGTTGCTAC 60.428 47.826 15.80 0.00 0.00 3.58
520 537 5.428184 AGGAGGAAGTAGATTTCAACCTG 57.572 43.478 0.00 0.00 34.91 4.00
542 559 1.001020 ATGCGAATCCCTGTTGCCA 60.001 52.632 0.00 0.00 0.00 4.92
543 560 1.315257 ATGCGAATCCCTGTTGCCAC 61.315 55.000 0.00 0.00 0.00 5.01
657 675 9.406113 CTAGTACTTAGGAACAATGGTAGTAGT 57.594 37.037 0.00 0.00 32.77 2.73
658 676 8.064336 AGTACTTAGGAACAATGGTAGTAGTG 57.936 38.462 0.00 0.00 0.00 2.74
685 703 6.942976 CCAACCTGTGGTTAGATAGTTAGAA 58.057 40.000 1.34 0.00 45.01 2.10
686 704 7.042335 CCAACCTGTGGTTAGATAGTTAGAAG 58.958 42.308 1.34 0.00 45.01 2.85
699 717 8.644374 AGATAGTTAGAAGGACAGTGATATCC 57.356 38.462 0.00 0.00 0.00 2.59
703 721 3.312890 AGAAGGACAGTGATATCCCCAG 58.687 50.000 0.00 0.00 0.00 4.45
704 722 1.428869 AGGACAGTGATATCCCCAGC 58.571 55.000 0.00 0.00 0.00 4.85
705 723 0.398318 GGACAGTGATATCCCCAGCC 59.602 60.000 0.00 0.00 0.00 4.85
707 725 0.327480 ACAGTGATATCCCCAGCCCA 60.327 55.000 0.00 0.00 0.00 5.36
708 726 1.070604 CAGTGATATCCCCAGCCCAT 58.929 55.000 0.00 0.00 0.00 4.00
730 748 0.108019 GGGTTCAAGTCACGTTCCCT 59.892 55.000 0.00 0.00 0.00 4.20
738 756 1.067776 AGTCACGTTCCCTTCGATGAC 60.068 52.381 0.00 1.69 38.38 3.06
751 769 1.734137 GATGACGAGGCGCCTAAGA 59.266 57.895 32.97 14.47 0.00 2.10
758 776 1.471676 CGAGGCGCCTAAGATGACTTT 60.472 52.381 32.97 1.35 37.53 2.66
776 794 9.875675 GATGACTTTGTAAATCTCAAGATATGC 57.124 33.333 0.00 0.00 33.73 3.14
794 812 1.431440 CCGGCTCAGTCTCTCGAAG 59.569 63.158 0.00 0.00 0.00 3.79
797 815 1.268488 CGGCTCAGTCTCTCGAAGATG 60.268 57.143 0.00 0.00 36.11 2.90
805 823 3.820467 AGTCTCTCGAAGATGCTCATAGG 59.180 47.826 0.00 0.00 36.11 2.57
806 824 3.818210 GTCTCTCGAAGATGCTCATAGGA 59.182 47.826 0.00 0.00 36.11 2.94
817 835 4.259933 TGCTCATAGGAGTAGGGTGTAA 57.740 45.455 6.23 0.00 43.37 2.41
826 844 3.554337 GGAGTAGGGTGTAAGTGTGTGTG 60.554 52.174 0.00 0.00 0.00 3.82
830 848 1.011333 GGTGTAAGTGTGTGTGCGTT 58.989 50.000 0.00 0.00 0.00 4.84
831 849 1.004292 GGTGTAAGTGTGTGTGCGTTC 60.004 52.381 0.00 0.00 0.00 3.95
832 850 1.661617 GTGTAAGTGTGTGTGCGTTCA 59.338 47.619 0.00 0.00 0.00 3.18
834 852 3.491639 GTGTAAGTGTGTGTGCGTTCATA 59.508 43.478 0.00 0.00 0.00 2.15
835 853 3.738791 TGTAAGTGTGTGTGCGTTCATAG 59.261 43.478 0.00 0.00 0.00 2.23
836 854 1.795768 AGTGTGTGTGCGTTCATAGG 58.204 50.000 0.00 0.00 0.00 2.57
837 855 0.796312 GTGTGTGTGCGTTCATAGGG 59.204 55.000 0.00 0.00 0.00 3.53
841 859 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
845 863 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
846 864 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
847 865 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
848 866 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
849 867 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
851 869 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
852 870 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
853 871 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
854 872 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
855 873 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06
856 874 0.852777 GGTGAGTGTATGCGCGTATG 59.147 55.000 20.45 0.00 0.00 2.39
857 875 1.556564 GTGAGTGTATGCGCGTATGT 58.443 50.000 20.45 0.00 0.00 2.29
858 876 2.542205 GGTGAGTGTATGCGCGTATGTA 60.542 50.000 20.45 5.53 0.00 2.29
859 877 2.466571 GTGAGTGTATGCGCGTATGTAC 59.533 50.000 20.45 16.94 0.00 2.90
870 888 1.553654 GTATGTACGAGCGCTTGCG 59.446 57.895 24.80 20.18 45.69 4.85
871 889 1.138036 TATGTACGAGCGCTTGCGT 59.862 52.632 24.68 24.68 45.69 5.24
872 890 0.864377 TATGTACGAGCGCTTGCGTC 60.864 55.000 24.96 17.10 45.69 5.19
873 891 3.542742 GTACGAGCGCTTGCGTCC 61.543 66.667 24.96 12.45 45.69 4.79
874 892 3.744719 TACGAGCGCTTGCGTCCT 61.745 61.111 24.96 8.56 45.69 3.85
875 893 3.277211 TACGAGCGCTTGCGTCCTT 62.277 57.895 24.96 7.85 45.69 3.36
876 894 1.925415 TACGAGCGCTTGCGTCCTTA 61.925 55.000 24.96 7.49 45.69 2.69
877 895 2.789203 CGAGCGCTTGCGTCCTTAC 61.789 63.158 13.26 0.00 45.69 2.34
878 896 1.446272 GAGCGCTTGCGTCCTTACT 60.446 57.895 13.26 3.73 45.69 2.24
879 897 1.687494 GAGCGCTTGCGTCCTTACTG 61.687 60.000 13.26 0.00 45.69 2.74
880 898 2.027625 GCGCTTGCGTCCTTACTGT 61.028 57.895 16.38 0.00 0.00 3.55
881 899 1.781555 CGCTTGCGTCCTTACTGTG 59.218 57.895 6.86 0.00 0.00 3.66
882 900 0.944311 CGCTTGCGTCCTTACTGTGT 60.944 55.000 6.86 0.00 0.00 3.72
883 901 1.226746 GCTTGCGTCCTTACTGTGTT 58.773 50.000 0.00 0.00 0.00 3.32
884 902 2.409975 GCTTGCGTCCTTACTGTGTTA 58.590 47.619 0.00 0.00 0.00 2.41
885 903 2.803956 GCTTGCGTCCTTACTGTGTTAA 59.196 45.455 0.00 0.00 0.00 2.01
886 904 3.249080 GCTTGCGTCCTTACTGTGTTAAA 59.751 43.478 0.00 0.00 0.00 1.52
887 905 4.260866 GCTTGCGTCCTTACTGTGTTAAAA 60.261 41.667 0.00 0.00 0.00 1.52
888 906 5.731126 GCTTGCGTCCTTACTGTGTTAAAAA 60.731 40.000 0.00 0.00 0.00 1.94
913 931 8.485578 AAAACAATGGTAGTAAAAATCCTCCA 57.514 30.769 0.00 0.00 0.00 3.86
917 935 6.715347 ATGGTAGTAAAAATCCTCCATTGC 57.285 37.500 0.00 0.00 31.31 3.56
926 944 2.048023 CCTCCATTGCATGTGCCGT 61.048 57.895 2.07 0.00 41.18 5.68
1157 1178 1.316266 CACTCCCTCCTCCCATCCT 59.684 63.158 0.00 0.00 0.00 3.24
1253 1274 1.856265 CTTTTCTGCCTCACGCACCC 61.856 60.000 0.00 0.00 44.64 4.61
1397 1418 0.902531 GGACCGATTCTTCCAGTCCA 59.097 55.000 2.68 0.00 45.20 4.02
1430 1451 6.791371 TGGTTGGTACCCTGTTGATTAATTA 58.209 36.000 10.07 0.00 44.35 1.40
1541 1562 7.272515 CGGTTTATTTTCGACAATTTAGTGCAT 59.727 33.333 1.52 0.00 0.00 3.96
1627 1648 3.129287 CCATAAATTGTTCAGGCGAGCTT 59.871 43.478 0.00 0.00 0.00 3.74
1795 1817 9.884465 GTGGCAAATATATCAATAGTTGTCTTC 57.116 33.333 10.36 2.73 44.54 2.87
1828 1850 8.282592 TCGACAACTTTTGATGACTTTTATCAG 58.717 33.333 0.00 0.00 36.07 2.90
1872 1894 8.713271 GTTAGTACTTTTAGAGCATCATATGGC 58.287 37.037 0.00 0.00 37.82 4.40
1881 1903 2.889045 AGCATCATATGGCTCGCAAATT 59.111 40.909 2.13 0.00 34.76 1.82
1921 1943 1.406751 CCTTGGACACACTCACACACA 60.407 52.381 0.00 0.00 0.00 3.72
2073 2095 7.592885 AGGGACATTCCATTTGAGAAATATG 57.407 36.000 0.00 0.00 38.64 1.78
2214 2300 2.127232 CAATGGGGATGCGGGGAAC 61.127 63.158 0.00 0.00 0.00 3.62
2241 2327 5.231702 AGGCACCAAAATCACATTCATTT 57.768 34.783 0.00 0.00 0.00 2.32
2331 2420 4.229876 GCAGACACAAGTAATCAAAAGGC 58.770 43.478 0.00 0.00 0.00 4.35
2417 2506 1.468127 TGTGCTGTGTATCATTTGCCG 59.532 47.619 0.00 0.00 0.00 5.69
2443 2532 7.545362 TTTTGGTTGGACACACATTTATTTG 57.455 32.000 0.00 0.00 0.00 2.32
2469 2559 7.210718 TGAATAATCAGCAATGCTAATCTGG 57.789 36.000 7.70 0.00 36.40 3.86
2597 2687 4.871557 TCTAGTGTAAGTTTTTGTGTGCGT 59.128 37.500 0.00 0.00 0.00 5.24
2679 2769 3.064207 TCATTACAGGACGAAACAGCAC 58.936 45.455 0.00 0.00 0.00 4.40
2705 2795 0.737715 GGTACTCGCACAGCAAGGAG 60.738 60.000 0.00 0.00 0.00 3.69
2723 2813 0.600557 AGAAGTGCCTCAGACTGTCG 59.399 55.000 1.59 0.00 0.00 4.35
2785 2875 5.670792 TGAACTACCACCGATCAGTTAAT 57.329 39.130 0.00 0.00 31.57 1.40
3091 3384 5.371115 TGATATGCTTCGTACGATGATCA 57.629 39.130 29.08 24.26 0.00 2.92
3095 3388 3.381045 TGCTTCGTACGATGATCAATCC 58.619 45.455 29.08 13.40 30.80 3.01
3221 3514 6.212955 ACCGTGTAAATTTTCCAACAGATTG 58.787 36.000 0.00 0.00 35.40 2.67
3236 3529 5.886960 ACAGATTGCCAAAGTGATAGAAC 57.113 39.130 0.00 0.00 0.00 3.01
3361 3654 6.111382 CAGCATTCCGATATCATCCAGTATT 58.889 40.000 3.12 0.00 0.00 1.89
3570 3863 4.862574 GCACTGATGTGATTTACGACAGTA 59.137 41.667 0.00 0.00 46.55 2.74
3634 3927 9.787435 TCTTATTTGTTGTGTGGATTAGTTAGT 57.213 29.630 0.00 0.00 0.00 2.24
3682 3975 0.978146 ACCGCTCCTTGTATCAGGCT 60.978 55.000 0.00 0.00 33.35 4.58
3787 4080 5.876460 TCCCAATATCAAGATGCGTATGATG 59.124 40.000 14.11 2.93 35.53 3.07
3831 4124 7.433131 TCAAGTATTAACCGCACTTATTACTCG 59.567 37.037 5.85 0.00 31.46 4.18
3844 4137 1.200519 TTACTCGGCTGGTTATGGCT 58.799 50.000 0.00 0.00 0.00 4.75
4066 4359 4.013050 CCCAGAAGGATCCTCAAACTTTC 58.987 47.826 16.52 7.01 38.24 2.62
4185 4478 5.477291 TCTTACTACCAGACAAGGAGAAGTG 59.523 44.000 0.00 0.00 0.00 3.16
4252 4545 3.056821 TGATGAAGATATTAGTCGCCCCG 60.057 47.826 0.00 0.00 0.00 5.73
4281 4574 5.769662 TGTTGAATCTTTAGCAGTGTCCAAT 59.230 36.000 0.00 0.00 0.00 3.16
4626 4919 4.094887 ACGATGAAAGTTGCATGTGGTATC 59.905 41.667 0.00 0.00 0.00 2.24
4830 5123 5.178797 GGACATAGTATGACTGTTGCACTT 58.821 41.667 17.13 0.00 0.00 3.16
4875 5168 5.070446 CACAATGGGTAGCTCTAGTAATGGA 59.930 44.000 0.00 0.00 0.00 3.41
5292 5585 1.376466 GAAGGTCCTGAAGGCTGCA 59.624 57.895 0.50 0.00 34.44 4.41
5509 5802 3.199508 AGAGCCAGTCAAGTATGCAGATT 59.800 43.478 0.00 0.00 0.00 2.40
5688 5981 4.225703 GGAATGGGCGCAATGGGC 62.226 66.667 14.21 14.21 40.84 5.36
5794 6087 0.323178 AAGTCCAGCTCCAGCAATGG 60.323 55.000 0.48 0.89 45.16 3.16
6341 6654 8.276252 TGAAACAAGCAATAAGGTATTACTCC 57.724 34.615 0.00 0.00 0.00 3.85
6342 6655 7.338449 TGAAACAAGCAATAAGGTATTACTCCC 59.662 37.037 0.00 0.00 0.00 4.30
6343 6656 6.576778 ACAAGCAATAAGGTATTACTCCCT 57.423 37.500 0.00 0.00 0.00 4.20
6344 6657 6.592870 ACAAGCAATAAGGTATTACTCCCTC 58.407 40.000 0.00 0.00 0.00 4.30
6345 6658 5.827326 AGCAATAAGGTATTACTCCCTCC 57.173 43.478 0.00 0.00 0.00 4.30
6346 6659 4.283722 AGCAATAAGGTATTACTCCCTCCG 59.716 45.833 0.00 0.00 0.00 4.63
6347 6660 4.040095 GCAATAAGGTATTACTCCCTCCGT 59.960 45.833 0.00 0.00 0.00 4.69
6348 6661 5.454329 GCAATAAGGTATTACTCCCTCCGTT 60.454 44.000 0.00 0.00 0.00 4.44
6349 6662 6.221659 CAATAAGGTATTACTCCCTCCGTTC 58.778 44.000 0.00 0.00 0.00 3.95
6350 6663 2.675583 AGGTATTACTCCCTCCGTTCC 58.324 52.381 0.00 0.00 0.00 3.62
6351 6664 2.246849 AGGTATTACTCCCTCCGTTCCT 59.753 50.000 0.00 0.00 0.00 3.36
6352 6665 3.464833 AGGTATTACTCCCTCCGTTCCTA 59.535 47.826 0.00 0.00 0.00 2.94
6353 6666 4.078980 AGGTATTACTCCCTCCGTTCCTAA 60.079 45.833 0.00 0.00 0.00 2.69
6354 6667 4.651045 GGTATTACTCCCTCCGTTCCTAAA 59.349 45.833 0.00 0.00 0.00 1.85
6355 6668 5.306419 GGTATTACTCCCTCCGTTCCTAAAT 59.694 44.000 0.00 0.00 0.00 1.40
6356 6669 6.494835 GGTATTACTCCCTCCGTTCCTAAATA 59.505 42.308 0.00 0.00 0.00 1.40
6357 6670 7.179872 GGTATTACTCCCTCCGTTCCTAAATAT 59.820 40.741 0.00 0.00 0.00 1.28
6358 6671 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
6359 6672 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
6360 6673 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
6361 6674 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
6362 6675 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6363 6676 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6364 6677 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6365 6678 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6366 6679 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6367 6680 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6368 6681 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6369 6682 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6370 6683 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6383 6696 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
6384 6697 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
6385 6698 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
6386 6699 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
6387 6700 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
6388 6701 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
6389 6702 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
6390 6703 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
6391 6704 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
6393 6706 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
6394 6707 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
6395 6708 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
6396 6709 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
6397 6710 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
6398 6711 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
6399 6712 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
6400 6713 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
6401 6714 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
6402 6715 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
6403 6716 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
6404 6717 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
6405 6718 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
6406 6719 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
6407 6720 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
6408 6721 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
6409 6722 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
6410 6723 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
6411 6724 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
6412 6725 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
6413 6726 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
6414 6727 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
6415 6728 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
6416 6729 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
6417 6730 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
6451 6764 9.990868 TGTCTATATACATCCATATGTGGTAGT 57.009 33.333 8.51 10.44 45.99 2.73
6453 6766 9.642343 TCTATATACATCCATATGTGGTAGTCC 57.358 37.037 8.51 0.00 45.99 3.85
6454 6767 9.421399 CTATATACATCCATATGTGGTAGTCCA 57.579 37.037 8.51 1.36 45.99 4.02
6455 6768 8.860517 ATATACATCCATATGTGGTAGTCCAT 57.139 34.615 8.51 3.29 45.99 3.41
6456 6769 5.912149 ACATCCATATGTGGTAGTCCATT 57.088 39.130 8.51 0.00 44.79 3.16
6457 6770 6.266131 ACATCCATATGTGGTAGTCCATTT 57.734 37.500 8.51 0.00 44.79 2.32
6458 6771 6.064060 ACATCCATATGTGGTAGTCCATTTG 58.936 40.000 8.51 0.00 44.79 2.32
6459 6772 5.966853 TCCATATGTGGTAGTCCATTTGA 57.033 39.130 8.51 0.00 46.20 2.69
6460 6773 6.320434 TCCATATGTGGTAGTCCATTTGAA 57.680 37.500 8.51 0.00 46.20 2.69
6461 6774 6.726379 TCCATATGTGGTAGTCCATTTGAAA 58.274 36.000 8.51 0.00 46.20 2.69
6462 6775 7.353525 TCCATATGTGGTAGTCCATTTGAAAT 58.646 34.615 8.51 0.00 46.20 2.17
6463 6776 7.502226 TCCATATGTGGTAGTCCATTTGAAATC 59.498 37.037 8.51 0.00 46.20 2.17
6464 6777 7.503566 CCATATGTGGTAGTCCATTTGAAATCT 59.496 37.037 0.00 0.00 46.20 2.40
6465 6778 8.562892 CATATGTGGTAGTCCATTTGAAATCTC 58.437 37.037 0.00 0.00 46.20 2.75
6466 6779 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
6467 6780 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
6468 6781 7.331026 TGTGGTAGTCCATTTGAAATCTCTAG 58.669 38.462 0.00 0.00 46.20 2.43
6469 6782 7.180229 TGTGGTAGTCCATTTGAAATCTCTAGA 59.820 37.037 0.00 0.00 46.20 2.43
6470 6783 8.041323 GTGGTAGTCCATTTGAAATCTCTAGAA 58.959 37.037 0.00 0.00 46.20 2.10
6471 6784 8.602424 TGGTAGTCCATTTGAAATCTCTAGAAA 58.398 33.333 0.00 0.00 39.03 2.52
6472 6785 9.103861 GGTAGTCCATTTGAAATCTCTAGAAAG 57.896 37.037 0.00 0.00 0.00 2.62
6473 6786 9.877178 GTAGTCCATTTGAAATCTCTAGAAAGA 57.123 33.333 0.00 0.00 0.00 2.52
6474 6787 8.785329 AGTCCATTTGAAATCTCTAGAAAGAC 57.215 34.615 0.00 0.00 0.00 3.01
6475 6788 8.378565 AGTCCATTTGAAATCTCTAGAAAGACA 58.621 33.333 0.00 0.00 0.00 3.41
6476 6789 9.003658 GTCCATTTGAAATCTCTAGAAAGACAA 57.996 33.333 0.00 0.00 0.00 3.18
6477 6790 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
6490 6803 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6491 6804 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6492 6805 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6493 6806 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6494 6807 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6495 6808 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6496 6809 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6497 6810 4.353383 AATATTTAGGAACGGAGGGAGC 57.647 45.455 0.00 0.00 0.00 4.70
6788 7101 2.903357 CAGGTCCGCTAGCATGGT 59.097 61.111 16.45 1.62 0.00 3.55
7016 7329 2.225267 CCATTCCCACCCCTTTTACTGT 60.225 50.000 0.00 0.00 0.00 3.55
7134 7456 1.062488 AACTCTGAAGGTGCCAGGGT 61.062 55.000 0.00 0.00 46.52 4.34
7296 7618 2.267642 GCATCGGCCACCTACACA 59.732 61.111 2.24 0.00 0.00 3.72
7352 7674 4.007644 CCCACTGCCAGCTGACGA 62.008 66.667 17.39 0.00 0.00 4.20
7536 7864 5.178623 CAGCGAGGTAAAATAGTTTGTGTCA 59.821 40.000 0.00 0.00 0.00 3.58
7620 7950 2.947852 AGTCTGCACACGAGTTATGAC 58.052 47.619 0.00 0.00 0.00 3.06
7621 7951 2.296190 AGTCTGCACACGAGTTATGACA 59.704 45.455 0.00 0.00 0.00 3.58
7701 8031 0.396060 GCCCAAGCCAAATCAACCAA 59.604 50.000 0.00 0.00 0.00 3.67
7704 8034 2.877786 CCCAAGCCAAATCAACCAAAAC 59.122 45.455 0.00 0.00 0.00 2.43
7816 8146 5.512434 CCAAAAGTGTCAAAATTTTGCTTGC 59.488 36.000 23.36 14.16 40.77 4.01
7836 8166 3.191162 TGCGCAAATTATGAAGCTGAACT 59.809 39.130 8.16 0.00 35.89 3.01
7842 8172 6.753279 GCAAATTATGAAGCTGAACTGCATTA 59.247 34.615 6.47 0.00 42.63 1.90
7876 8206 8.869897 CAGTGTAATCGCTAAAATTCAGACTAA 58.130 33.333 0.00 0.00 32.72 2.24
7881 8211 6.583912 TCGCTAAAATTCAGACTAAATCCG 57.416 37.500 0.00 0.00 0.00 4.18
7947 8291 5.776744 CTCAGCCAACTTTATTTTTCAGCT 58.223 37.500 0.00 0.00 0.00 4.24
7950 8294 5.176223 CAGCCAACTTTATTTTTCAGCTGTG 59.824 40.000 14.67 0.00 40.16 3.66
7951 8295 5.049828 GCCAACTTTATTTTTCAGCTGTGT 58.950 37.500 14.67 0.00 0.00 3.72
8024 8369 6.230472 TGAGAATCAGAAGGTCATTTTCGAA 58.770 36.000 0.00 0.00 42.56 3.71
8028 8373 8.579863 AGAATCAGAAGGTCATTTTCGAATTTT 58.420 29.630 0.00 0.00 0.00 1.82
8067 8412 3.317993 CGGAATCTGGGTTTTTGAACACT 59.682 43.478 0.00 0.00 0.00 3.55
8127 8473 6.541934 TTCAAATTTCCATCACCATGCATA 57.458 33.333 0.00 0.00 0.00 3.14
8132 8478 2.126057 TCCATCACCATGCATAGGTCA 58.874 47.619 15.32 6.17 37.23 4.02
8198 8546 3.253188 CACAAGGTCACAATCGGTTCATT 59.747 43.478 0.00 0.00 0.00 2.57
8207 8555 6.907212 GTCACAATCGGTTCATTCAATGATAC 59.093 38.462 0.00 2.90 39.39 2.24
8383 8733 7.607991 GCCCAATATACAAACAGATATACAGCT 59.392 37.037 0.00 0.00 0.00 4.24
8490 8840 2.511373 GCATGATCGTGGCGACCA 60.511 61.111 16.59 0.00 39.18 4.02
8576 8929 3.023119 TCTAAGCTCCTCAGAAGCAGAG 58.977 50.000 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.916661 TGGCTACTCCTTTTAGTCTGTAG 57.083 43.478 0.00 0.00 35.26 2.74
34 35 6.675413 TTTGGCTACTCCTTTTAGTCTGTA 57.325 37.500 0.00 0.00 35.26 2.74
35 36 5.562298 TTTGGCTACTCCTTTTAGTCTGT 57.438 39.130 0.00 0.00 35.26 3.41
36 37 6.877611 TTTTTGGCTACTCCTTTTAGTCTG 57.122 37.500 0.00 0.00 35.26 3.51
37 38 9.755122 AATATTTTTGGCTACTCCTTTTAGTCT 57.245 29.630 0.00 0.00 35.26 3.24
41 42 9.921637 CACAAATATTTTTGGCTACTCCTTTTA 57.078 29.630 12.41 0.00 45.34 1.52
42 43 7.387673 GCACAAATATTTTTGGCTACTCCTTTT 59.612 33.333 14.52 0.00 45.34 2.27
43 44 6.873605 GCACAAATATTTTTGGCTACTCCTTT 59.126 34.615 14.52 0.00 45.34 3.11
72 73 3.539604 GGGTCATGAGTTCCAATCTCAG 58.460 50.000 0.00 0.00 43.66 3.35
225 231 0.889186 TTCTTGAAGTGGCTTCCCGC 60.889 55.000 6.44 0.00 39.51 6.13
263 273 7.922811 GCTAGACCAAATCCATTTAATTCCTTG 59.077 37.037 0.00 0.00 0.00 3.61
321 332 2.740580 GCAACCATCCATGCAAATCCAG 60.741 50.000 0.00 0.00 42.12 3.86
398 410 6.212791 TCATTAATTCTAAGGTATCCCCCTCG 59.787 42.308 0.00 0.00 32.13 4.63
414 427 8.664211 ACTCCCGAAGATTAACTCATTAATTC 57.336 34.615 0.00 0.00 40.42 2.17
520 537 0.734889 CAACAGGGATTCGCATGTCC 59.265 55.000 3.36 0.00 0.00 4.02
542 559 2.520020 TGGACGGTGTCACCTCGT 60.520 61.111 19.82 13.18 35.66 4.18
543 560 1.595993 ATCTGGACGGTGTCACCTCG 61.596 60.000 19.82 10.00 35.66 4.63
665 683 6.380274 TGTCCTTCTAACTATCTAACCACAGG 59.620 42.308 0.00 0.00 0.00 4.00
666 684 7.122948 ACTGTCCTTCTAACTATCTAACCACAG 59.877 40.741 0.00 0.00 0.00 3.66
675 693 7.093684 GGGGATATCACTGTCCTTCTAACTATC 60.094 44.444 4.65 0.00 33.34 2.08
678 696 4.902448 GGGGATATCACTGTCCTTCTAACT 59.098 45.833 4.65 0.00 33.34 2.24
683 701 2.224402 GCTGGGGATATCACTGTCCTTC 60.224 54.545 4.65 0.00 33.34 3.46
685 703 1.428869 GCTGGGGATATCACTGTCCT 58.571 55.000 4.65 0.00 33.34 3.85
686 704 0.398318 GGCTGGGGATATCACTGTCC 59.602 60.000 4.65 0.00 32.06 4.02
705 723 1.270839 ACGTGACTTGAACCCTGATGG 60.271 52.381 0.00 0.00 41.37 3.51
707 725 2.550208 GGAACGTGACTTGAACCCTGAT 60.550 50.000 0.00 0.00 0.00 2.90
708 726 1.202604 GGAACGTGACTTGAACCCTGA 60.203 52.381 0.00 0.00 0.00 3.86
716 734 1.726791 CATCGAAGGGAACGTGACTTG 59.273 52.381 4.62 0.00 0.00 3.16
730 748 1.659622 TTAGGCGCCTCGTCATCGAA 61.660 55.000 36.73 16.86 45.61 3.71
738 756 0.103208 AAGTCATCTTAGGCGCCTCG 59.897 55.000 36.73 25.28 31.46 4.63
743 761 6.535150 TGAGATTTACAAAGTCATCTTAGGCG 59.465 38.462 0.00 0.00 33.09 5.52
751 769 8.844244 GGCATATCTTGAGATTTACAAAGTCAT 58.156 33.333 0.00 0.00 36.05 3.06
758 776 4.065088 GCCGGCATATCTTGAGATTTACA 58.935 43.478 24.80 0.00 36.05 2.41
776 794 1.027255 TCTTCGAGAGACTGAGCCGG 61.027 60.000 0.00 0.00 41.84 6.13
794 812 3.235200 ACACCCTACTCCTATGAGCATC 58.765 50.000 0.00 0.00 42.74 3.91
797 815 4.038162 CACTTACACCCTACTCCTATGAGC 59.962 50.000 0.00 0.00 42.74 4.26
805 823 3.650139 CACACACACTTACACCCTACTC 58.350 50.000 0.00 0.00 0.00 2.59
806 824 2.224209 GCACACACACTTACACCCTACT 60.224 50.000 0.00 0.00 0.00 2.57
817 835 1.608025 CCCTATGAACGCACACACACT 60.608 52.381 0.00 0.00 0.00 3.55
826 844 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
830 848 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
831 849 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
832 850 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
834 852 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
835 853 2.287457 TACGCGCATACACTCACCCC 62.287 60.000 5.73 0.00 0.00 4.95
836 854 0.249322 ATACGCGCATACACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
837 855 0.852777 CATACGCGCATACACTCACC 59.147 55.000 5.73 0.00 0.00 4.02
841 859 1.750351 CGTACATACGCGCATACACT 58.250 50.000 5.73 0.00 43.14 3.55
852 870 1.138047 ACGCAAGCGCTCGTACATAC 61.138 55.000 20.96 0.00 44.19 2.39
853 871 0.864377 GACGCAAGCGCTCGTACATA 60.864 55.000 22.11 0.00 44.19 2.29
854 872 2.126071 ACGCAAGCGCTCGTACAT 60.126 55.556 20.96 0.00 44.19 2.29
855 873 2.803670 GACGCAAGCGCTCGTACA 60.804 61.111 22.11 0.00 44.19 2.90
856 874 3.542742 GGACGCAAGCGCTCGTAC 61.543 66.667 22.11 19.50 44.19 3.67
857 875 1.925415 TAAGGACGCAAGCGCTCGTA 61.925 55.000 22.11 6.00 44.19 3.43
858 876 3.277211 TAAGGACGCAAGCGCTCGT 62.277 57.895 22.23 22.23 44.19 4.18
859 877 2.506217 TAAGGACGCAAGCGCTCG 60.506 61.111 12.06 14.49 44.19 5.03
860 878 1.446272 AGTAAGGACGCAAGCGCTC 60.446 57.895 12.06 10.85 44.19 5.03
861 879 1.738099 CAGTAAGGACGCAAGCGCT 60.738 57.895 15.09 2.64 44.19 5.92
862 880 2.027625 ACAGTAAGGACGCAAGCGC 61.028 57.895 15.09 0.00 44.19 5.92
863 881 0.944311 ACACAGTAAGGACGCAAGCG 60.944 55.000 13.50 13.50 46.03 4.68
864 882 1.226746 AACACAGTAAGGACGCAAGC 58.773 50.000 0.00 0.00 45.62 4.01
866 884 5.814764 TTTTTAACACAGTAAGGACGCAA 57.185 34.783 0.00 0.00 0.00 4.85
887 905 8.929487 TGGAGGATTTTTACTACCATTGTTTTT 58.071 29.630 0.00 0.00 0.00 1.94
888 906 8.485578 TGGAGGATTTTTACTACCATTGTTTT 57.514 30.769 0.00 0.00 0.00 2.43
889 907 8.664669 ATGGAGGATTTTTACTACCATTGTTT 57.335 30.769 0.00 0.00 33.67 2.83
890 908 8.664669 AATGGAGGATTTTTACTACCATTGTT 57.335 30.769 0.00 0.00 42.48 2.83
913 931 1.533625 ACTACAACGGCACATGCAAT 58.466 45.000 6.15 0.00 44.36 3.56
985 1006 2.839486 ATGACACTACCACCACACAG 57.161 50.000 0.00 0.00 0.00 3.66
1157 1178 3.390521 ACTCCGCGGCAATCCAGA 61.391 61.111 23.51 0.00 0.00 3.86
1253 1274 1.891919 CGATGGTGGGGCATTACGG 60.892 63.158 0.00 0.00 0.00 4.02
1397 1418 1.078426 GTACCAACCAGGCAGCGAT 60.078 57.895 0.00 0.00 43.14 4.58
1430 1451 8.771920 TGATCGAACAAGTAATGTGTTAGATT 57.228 30.769 12.19 0.63 45.48 2.40
1541 1562 7.059202 GGTTCTCCCTTTAATCTACGGAATA 57.941 40.000 0.00 0.00 0.00 1.75
1627 1648 6.595716 CACAAAAATTGTAAAAAGGGGACACA 59.404 34.615 0.00 0.00 43.23 3.72
1691 1713 7.603404 AGGTCTACATGACTATCTATACGACAC 59.397 40.741 0.00 0.00 44.74 3.67
1795 1817 4.511454 TCATCAAAAGTTGTCGAGAACCTG 59.489 41.667 20.68 15.39 0.00 4.00
1872 1894 1.200020 GTCCCCTTCACAATTTGCGAG 59.800 52.381 0.00 0.00 0.00 5.03
1881 1903 0.472471 GACCTTGTGTCCCCTTCACA 59.528 55.000 0.00 0.00 42.84 3.58
1921 1943 1.077265 CTGCAAATGGGGAGGTGGT 59.923 57.895 0.00 0.00 0.00 4.16
1980 2002 1.714460 GTGTGCTACGTCGACTTGAAG 59.286 52.381 14.70 6.48 0.00 3.02
1981 2003 1.601162 GGTGTGCTACGTCGACTTGAA 60.601 52.381 14.70 0.00 0.00 2.69
1990 2012 8.508883 TTTATATAATTTTGGGTGTGCTACGT 57.491 30.769 0.00 0.00 0.00 3.57
2073 2095 3.065371 CAGGACTATGTTCCAAAATCCGC 59.935 47.826 0.00 0.00 38.25 5.54
2139 2166 5.186256 TGTTCCAAATTCAGCCTGGTATA 57.814 39.130 0.00 0.00 0.00 1.47
2146 2173 1.340889 TGCACTGTTCCAAATTCAGCC 59.659 47.619 0.00 0.00 33.12 4.85
2148 2175 8.246180 ACTTATAATGCACTGTTCCAAATTCAG 58.754 33.333 0.00 0.00 35.60 3.02
2149 2176 8.121305 ACTTATAATGCACTGTTCCAAATTCA 57.879 30.769 0.00 0.00 0.00 2.57
2150 2177 8.986477 AACTTATAATGCACTGTTCCAAATTC 57.014 30.769 0.00 0.00 0.00 2.17
2151 2178 8.584157 TGAACTTATAATGCACTGTTCCAAATT 58.416 29.630 9.33 0.00 34.63 1.82
2214 2300 4.789012 ATGTGATTTTGGTGCCTAAGTG 57.211 40.909 0.00 0.00 0.00 3.16
2331 2420 5.631026 CAACAGGTCACCATTCTATTTTCG 58.369 41.667 0.00 0.00 0.00 3.46
2417 2506 7.546778 AATAAATGTGTGTCCAACCAAAAAC 57.453 32.000 0.00 0.00 0.00 2.43
2443 2532 7.594015 CCAGATTAGCATTGCTGATTATTCAAC 59.406 37.037 21.31 4.88 40.10 3.18
2469 2559 7.307811 GGCCTTTCGGACATGTAAAATATAGTC 60.308 40.741 0.00 0.00 38.64 2.59
2597 2687 5.127845 ACATGAACATTGGTACCACACAAAA 59.872 36.000 16.04 0.00 0.00 2.44
2679 2769 1.993370 GCTGTGCGAGTACCAAACTAG 59.007 52.381 0.00 0.00 39.07 2.57
2705 2795 0.315568 ACGACAGTCTGAGGCACTTC 59.684 55.000 6.91 0.00 41.55 3.01
2723 2813 4.809426 CCAGGTATGATTTTAGACACGGAC 59.191 45.833 0.00 0.00 0.00 4.79
2785 2875 1.664659 CAACAACGTAACCACCAACGA 59.335 47.619 1.45 0.00 41.55 3.85
2883 2974 1.668419 GTCCCAATTCCGGATGTCAG 58.332 55.000 4.15 0.00 0.00 3.51
3040 3333 6.751157 TGAAGCATTTCACATCAGTTCAAAT 58.249 32.000 0.00 0.00 38.37 2.32
3091 3384 5.496556 TCCGTGTCATTATTGTCTTGGATT 58.503 37.500 0.00 0.00 0.00 3.01
3095 3388 7.076842 AGAATTCCGTGTCATTATTGTCTTG 57.923 36.000 0.65 0.00 0.00 3.02
3221 3514 7.487189 CAGAAAATGATGTTCTATCACTTTGGC 59.513 37.037 0.00 0.00 33.53 4.52
3431 3724 1.155042 GAAGCTGAAGCACCTCACAG 58.845 55.000 4.90 0.00 45.16 3.66
3598 3891 9.487790 CCACACAACAAATAAGAATTAAATGGT 57.512 29.630 0.00 0.00 32.17 3.55
3682 3975 5.086104 GTGTAAGCCACTCTCCAATCTTA 57.914 43.478 0.00 0.00 41.11 2.10
3787 4080 5.363939 ACTTGAGGCAATATCTAGTCTTGC 58.636 41.667 14.25 14.25 43.47 4.01
3831 4124 3.833304 GCTGAGCCATAACCAGCC 58.167 61.111 0.00 0.00 45.38 4.85
4066 4359 3.996150 AACATCTGTTTTGGAGCACAG 57.004 42.857 0.00 0.00 41.65 3.66
4252 4545 6.729187 ACACTGCTAAAGATTCAACAAGTTC 58.271 36.000 0.00 0.00 0.00 3.01
4281 4574 2.493035 CCGCATGCAATATACTCCACA 58.507 47.619 19.57 0.00 0.00 4.17
4626 4919 0.804544 CAATTGCTGCGGAATGCCAG 60.805 55.000 0.00 0.00 45.60 4.85
5217 5510 5.119125 GCAATTGTAACAATTGTGCCTCTTC 59.881 40.000 12.82 0.00 39.25 2.87
5292 5585 4.850193 CCAGGAGTTGGTGCCAAT 57.150 55.556 6.95 0.00 42.41 3.16
5688 5981 1.547675 CCCATTCCCATACCCATTCCG 60.548 57.143 0.00 0.00 0.00 4.30
5794 6087 4.035675 ACTTTTAACAGACAGAGCACTTGC 59.964 41.667 0.00 0.00 42.49 4.01
5920 6228 7.119262 TGCTAAAGCCAAGAAGATACAGTAAAC 59.881 37.037 0.00 0.00 41.18 2.01
6340 6653 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6341 6654 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6342 6655 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6343 6656 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6344 6657 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6357 6670 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
6358 6671 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
6359 6672 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
6360 6673 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
6361 6674 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
6362 6675 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
6363 6676 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
6364 6677 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
6365 6678 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
6366 6679 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
6367 6680 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
6368 6681 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
6369 6682 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
6370 6683 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
6371 6684 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
6372 6685 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
6373 6686 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
6374 6687 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
6375 6688 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
6376 6689 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
6377 6690 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
6378 6691 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
6379 6692 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
6380 6693 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
6381 6694 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
6382 6695 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
6383 6696 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
6384 6697 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
6385 6698 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
6386 6699 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
6387 6700 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
6388 6701 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
6389 6702 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
6390 6703 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
6391 6704 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
6392 6705 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
6393 6706 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
6394 6707 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
6395 6708 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
6446 6759 9.103861 CTTTCTAGAGATTTCAAATGGACTACC 57.896 37.037 0.00 0.00 0.00 3.18
6447 6760 9.877178 TCTTTCTAGAGATTTCAAATGGACTAC 57.123 33.333 0.00 0.00 0.00 2.73
6448 6761 9.877178 GTCTTTCTAGAGATTTCAAATGGACTA 57.123 33.333 0.00 0.00 0.00 2.59
6449 6762 8.378565 TGTCTTTCTAGAGATTTCAAATGGACT 58.621 33.333 0.00 0.00 0.00 3.85
6450 6763 8.553459 TGTCTTTCTAGAGATTTCAAATGGAC 57.447 34.615 0.00 0.00 0.00 4.02
6451 6764 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
6464 6777 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
6465 6778 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
6466 6779 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
6467 6780 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
6468 6781 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
6469 6782 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
6470 6783 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
6471 6784 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
6472 6785 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
6473 6786 5.681639 CTCCCTCCGTTCCTAAATATTTGT 58.318 41.667 11.05 0.00 0.00 2.83
6474 6787 4.515567 GCTCCCTCCGTTCCTAAATATTTG 59.484 45.833 11.05 1.40 0.00 2.32
6475 6788 4.165372 TGCTCCCTCCGTTCCTAAATATTT 59.835 41.667 5.89 5.89 0.00 1.40
6476 6789 3.714798 TGCTCCCTCCGTTCCTAAATATT 59.285 43.478 0.00 0.00 0.00 1.28
6477 6790 3.314693 TGCTCCCTCCGTTCCTAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
6478 6791 2.754465 TGCTCCCTCCGTTCCTAAATA 58.246 47.619 0.00 0.00 0.00 1.40
6479 6792 1.580059 TGCTCCCTCCGTTCCTAAAT 58.420 50.000 0.00 0.00 0.00 1.40
6480 6793 1.580059 ATGCTCCCTCCGTTCCTAAA 58.420 50.000 0.00 0.00 0.00 1.85
6481 6794 1.580059 AATGCTCCCTCCGTTCCTAA 58.420 50.000 0.00 0.00 0.00 2.69
6482 6795 1.580059 AAATGCTCCCTCCGTTCCTA 58.420 50.000 0.00 0.00 0.00 2.94
6483 6796 0.698818 AAAATGCTCCCTCCGTTCCT 59.301 50.000 0.00 0.00 0.00 3.36
6484 6797 1.202348 CAAAAATGCTCCCTCCGTTCC 59.798 52.381 0.00 0.00 0.00 3.62
6485 6798 1.886542 ACAAAAATGCTCCCTCCGTTC 59.113 47.619 0.00 0.00 0.00 3.95
6486 6799 1.995376 ACAAAAATGCTCCCTCCGTT 58.005 45.000 0.00 0.00 0.00 4.44
6487 6800 2.871096 TACAAAAATGCTCCCTCCGT 57.129 45.000 0.00 0.00 0.00 4.69
6488 6801 4.718940 AAATACAAAAATGCTCCCTCCG 57.281 40.909 0.00 0.00 0.00 4.63
6489 6802 6.405842 CCACTAAATACAAAAATGCTCCCTCC 60.406 42.308 0.00 0.00 0.00 4.30
6490 6803 6.564328 CCACTAAATACAAAAATGCTCCCTC 58.436 40.000 0.00 0.00 0.00 4.30
6491 6804 5.105351 GCCACTAAATACAAAAATGCTCCCT 60.105 40.000 0.00 0.00 0.00 4.20
6492 6805 5.105351 AGCCACTAAATACAAAAATGCTCCC 60.105 40.000 0.00 0.00 0.00 4.30
6493 6806 5.965922 AGCCACTAAATACAAAAATGCTCC 58.034 37.500 0.00 0.00 0.00 4.70
6494 6807 6.620678 TGAGCCACTAAATACAAAAATGCTC 58.379 36.000 0.00 0.00 41.29 4.26
6495 6808 6.588719 TGAGCCACTAAATACAAAAATGCT 57.411 33.333 0.00 0.00 0.00 3.79
6788 7101 3.806949 AGGAACTGCCATCCAAGTTAA 57.193 42.857 2.80 0.00 39.55 2.01
7296 7618 2.431942 AACGGCGCGATTCGTCTT 60.432 55.556 12.10 0.00 41.41 3.01
7352 7674 3.068873 GTCGCCAGGATCTTCAGACTAAT 59.931 47.826 0.00 0.00 0.00 1.73
7536 7864 2.745728 CGCGAGGATTACACCGTTT 58.254 52.632 0.00 0.00 34.73 3.60
7604 7934 2.035321 TCAGTGTCATAACTCGTGTGCA 59.965 45.455 0.00 0.00 0.00 4.57
7704 8034 3.119637 AGTGACACGACCAAAACCAAAAG 60.120 43.478 0.00 0.00 0.00 2.27
7816 8146 3.545078 GCAGTTCAGCTTCATAATTTGCG 59.455 43.478 0.00 0.00 0.00 4.85
7836 8166 6.457663 GCGATTACACTGTTACCAATAATGCA 60.458 38.462 0.00 0.00 0.00 3.96
7842 8172 7.675962 TTTTAGCGATTACACTGTTACCAAT 57.324 32.000 0.00 0.00 0.00 3.16
7876 8206 4.274214 GCGGCCTTATTAACTTTACGGATT 59.726 41.667 0.00 0.00 0.00 3.01
7881 8211 4.855531 CCATGCGGCCTTATTAACTTTAC 58.144 43.478 0.00 0.00 0.00 2.01
7922 8266 5.776744 CTGAAAAATAAAGTTGGCTGAGCT 58.223 37.500 3.72 0.00 0.00 4.09
7962 8306 7.125053 TCCTTGTCTTGGTCTTTAATGGTTTTT 59.875 33.333 0.00 0.00 0.00 1.94
8007 8351 6.363357 GGTGAAAATTCGAAAATGACCTTCTG 59.637 38.462 0.00 0.00 0.00 3.02
8010 8354 6.405278 AGGTGAAAATTCGAAAATGACCTT 57.595 33.333 0.00 0.00 0.00 3.50
8016 8361 7.764695 AACGAAAAGGTGAAAATTCGAAAAT 57.235 28.000 12.95 0.00 45.45 1.82
8024 8369 6.972722 TCCGAATTAACGAAAAGGTGAAAAT 58.027 32.000 0.00 0.00 35.09 1.82
8028 8373 5.935789 AGATTCCGAATTAACGAAAAGGTGA 59.064 36.000 0.00 0.00 35.09 4.02
8067 8412 2.223144 CGTTTCCTGAAGCACGATTGAA 59.777 45.455 0.00 0.00 34.49 2.69
8071 8416 1.714794 CTCGTTTCCTGAAGCACGAT 58.285 50.000 7.13 0.00 40.66 3.73
8072 8417 0.944311 GCTCGTTTCCTGAAGCACGA 60.944 55.000 6.63 6.63 39.27 4.35
8127 8473 6.325919 TGTCGCATCTTTTTAATTTGACCT 57.674 33.333 0.00 0.00 0.00 3.85
8162 8510 2.108250 ACCTTGTGCTAGGGTTTGTGAT 59.892 45.455 4.84 0.00 34.61 3.06
8207 8555 7.926018 TGTAGCATGGTCAGTTTGTATAGTATG 59.074 37.037 0.00 0.00 0.00 2.39
8383 8733 4.919774 TGTGTATGGGAAAAGAAGGCTA 57.080 40.909 0.00 0.00 0.00 3.93
8384 8734 3.806949 TGTGTATGGGAAAAGAAGGCT 57.193 42.857 0.00 0.00 0.00 4.58
8490 8840 5.650266 TGGTGCGTAAATACTGGAATTGATT 59.350 36.000 0.00 0.00 0.00 2.57
8576 8929 3.273919 ACGCATTGCAGAAGAAGAAAC 57.726 42.857 9.69 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.