Multiple sequence alignment - TraesCS1D01G371600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G371600 chr1D 100.000 4993 0 0 1 4993 449750092 449755084 0.000000e+00 9221.0
1 TraesCS1D01G371600 chr1D 87.206 1274 95 37 2523 3763 449674622 449675860 0.000000e+00 1387.0
2 TraesCS1D01G371600 chr1D 85.201 1365 91 45 2409 3717 449660266 449661575 0.000000e+00 1299.0
3 TraesCS1D01G371600 chr1D 84.892 973 90 28 2471 3418 449923665 449922725 0.000000e+00 929.0
4 TraesCS1D01G371600 chr1D 83.751 997 91 32 4046 4990 449675861 449676838 0.000000e+00 878.0
5 TraesCS1D01G371600 chr1D 86.308 577 50 14 4064 4625 449661812 449662374 7.150000e-168 601.0
6 TraesCS1D01G371600 chr1D 94.225 329 18 1 2495 2822 449846794 449847122 7.460000e-138 501.0
7 TraesCS1D01G371600 chr1D 95.268 317 13 2 418 733 479442451 479442766 7.460000e-138 501.0
8 TraesCS1D01G371600 chr1D 84.540 511 45 13 2929 3418 449847243 449847740 4.520000e-130 475.0
9 TraesCS1D01G371600 chr1D 80.315 635 90 20 2795 3418 450046509 450047119 9.860000e-122 448.0
10 TraesCS1D01G371600 chr1D 83.034 501 50 10 2935 3417 449983002 449982519 5.980000e-114 422.0
11 TraesCS1D01G371600 chr1D 79.032 682 94 30 2919 3569 450044852 450044189 5.980000e-114 422.0
12 TraesCS1D01G371600 chr1D 93.165 278 19 0 2547 2824 449983434 449983157 4.650000e-110 409.0
13 TraesCS1D01G371600 chr1D 90.036 281 23 5 3776 4053 306625370 306625648 4.750000e-95 359.0
14 TraesCS1D01G371600 chr1D 87.500 280 23 11 4692 4969 449666339 449666070 3.750000e-81 313.0
15 TraesCS1D01G371600 chr1D 89.496 238 17 4 1037 1268 132217397 132217162 1.360000e-75 294.0
16 TraesCS1D01G371600 chr1D 94.886 176 6 3 242 416 320215487 320215314 6.370000e-69 272.0
17 TraesCS1D01G371600 chr1D 91.729 133 10 1 908 1040 449674400 449674531 3.070000e-42 183.0
18 TraesCS1D01G371600 chr1D 88.750 80 5 1 129 204 449674076 449674155 1.480000e-15 95.3
19 TraesCS1D01G371600 chr1D 81.452 124 9 2 99 208 449659601 449659724 6.880000e-14 89.8
20 TraesCS1D01G371600 chr6D 85.456 1437 135 33 1035 2411 199358872 199357450 0.000000e+00 1428.0
21 TraesCS1D01G371600 chr6D 86.819 1138 118 17 1294 2408 448332542 448333670 0.000000e+00 1242.0
22 TraesCS1D01G371600 chr6D 90.656 717 57 9 1335 2046 401170468 401169757 0.000000e+00 944.0
23 TraesCS1D01G371600 chr6D 94.737 323 15 2 418 739 401776123 401775802 7.460000e-138 501.0
24 TraesCS1D01G371600 chr6D 84.298 121 10 8 2930 3047 309719539 309719653 5.280000e-20 110.0
25 TraesCS1D01G371600 chr6D 79.630 108 22 0 2942 3049 408945988 408946095 1.490000e-10 78.7
26 TraesCS1D01G371600 chr1A 88.657 1199 80 16 2523 3692 544748274 544749445 0.000000e+00 1410.0
27 TraesCS1D01G371600 chr1A 91.570 688 50 4 1294 1978 13032325 13033007 0.000000e+00 942.0
28 TraesCS1D01G371600 chr1A 85.437 927 94 24 4051 4962 544749709 544750609 0.000000e+00 926.0
29 TraesCS1D01G371600 chr1A 87.962 731 63 18 4046 4764 544934150 544934867 0.000000e+00 839.0
30 TraesCS1D01G371600 chr1A 88.646 687 44 8 2928 3593 544928180 544928853 0.000000e+00 806.0
31 TraesCS1D01G371600 chr1A 80.232 1123 136 56 2547 3628 545009498 545008421 0.000000e+00 765.0
32 TraesCS1D01G371600 chr1A 78.952 1050 118 53 2547 3569 545025252 545024279 1.970000e-173 619.0
33 TraesCS1D01G371600 chr1A 86.444 509 40 5 2928 3418 545000587 545001084 9.520000e-147 531.0
34 TraesCS1D01G371600 chr1A 81.222 671 68 30 4314 4965 544819039 544819670 5.810000e-134 488.0
35 TraesCS1D01G371600 chr1A 90.813 283 20 5 3771 4053 407673753 407674029 1.700000e-99 374.0
36 TraesCS1D01G371600 chr1A 90.459 283 19 5 3776 4053 545745664 545745943 2.840000e-97 366.0
37 TraesCS1D01G371600 chr1A 85.799 169 11 4 3595 3762 544933990 544934146 3.090000e-37 167.0
38 TraesCS1D01G371600 chr1A 88.489 139 11 2 907 1040 544999946 545000084 4.000000e-36 163.0
39 TraesCS1D01G371600 chr1A 77.734 256 37 6 2177 2412 76721472 76721727 6.740000e-29 139.0
40 TraesCS1D01G371600 chr1A 83.448 145 9 8 905 1034 544927619 544927763 2.440000e-23 121.0
41 TraesCS1D01G371600 chr1B 87.072 1284 83 33 2523 3751 615581714 615582969 0.000000e+00 1375.0
42 TraesCS1D01G371600 chr1B 85.637 1114 89 24 2409 3484 615625484 615626564 0.000000e+00 1105.0
43 TraesCS1D01G371600 chr1B 84.396 910 75 30 2547 3417 615745197 615744316 0.000000e+00 832.0
44 TraesCS1D01G371600 chr1B 87.078 503 33 12 2937 3418 615732524 615733015 1.580000e-149 540.0
45 TraesCS1D01G371600 chr1B 83.673 539 61 17 4454 4969 615627461 615627995 2.700000e-132 483.0
46 TraesCS1D01G371600 chr1B 87.799 418 30 11 2409 2819 615732032 615732435 2.100000e-128 470.0
47 TraesCS1D01G371600 chr1B 80.639 532 53 16 2919 3418 616565735 616565222 2.840000e-97 366.0
48 TraesCS1D01G371600 chr1B 92.339 248 14 2 4105 4347 615627111 615627358 1.030000e-91 348.0
49 TraesCS1D01G371600 chr1B 81.279 438 34 23 4448 4872 615583582 615583984 1.350000e-80 311.0
50 TraesCS1D01G371600 chr1B 89.423 208 19 3 4049 4253 615583011 615583218 4.960000e-65 259.0
51 TraesCS1D01G371600 chr1B 81.373 306 32 12 733 1017 615731724 615732025 5.030000e-55 226.0
52 TraesCS1D01G371600 chr1B 90.816 98 8 1 1 97 615731427 615731524 4.060000e-26 130.0
53 TraesCS1D01G371600 chr1B 82.456 114 7 4 108 208 615624983 615625096 2.480000e-13 87.9
54 TraesCS1D01G371600 chr2A 84.443 1427 152 29 1043 2408 102453730 102452313 0.000000e+00 1341.0
55 TraesCS1D01G371600 chr2A 86.258 1157 111 17 1296 2408 139182910 139181758 0.000000e+00 1212.0
56 TraesCS1D01G371600 chr2A 86.618 822 67 16 1037 1820 700527344 700528160 0.000000e+00 869.0
57 TraesCS1D01G371600 chr7D 84.468 1410 156 32 1039 2408 46700427 46701813 0.000000e+00 1332.0
58 TraesCS1D01G371600 chr7D 86.089 1028 86 24 1043 2020 576077156 576076136 0.000000e+00 1053.0
59 TraesCS1D01G371600 chr7D 88.054 745 75 8 1294 2033 61501722 61502457 0.000000e+00 870.0
60 TraesCS1D01G371600 chr7D 95.016 321 14 2 420 739 499467726 499467407 2.070000e-138 503.0
61 TraesCS1D01G371600 chr6A 87.111 1156 102 20 1294 2408 265859088 265860237 0.000000e+00 1266.0
62 TraesCS1D01G371600 chr3D 86.460 1130 117 24 1294 2408 564315049 564316157 0.000000e+00 1206.0
63 TraesCS1D01G371600 chr3D 85.894 794 75 19 1040 1803 612056170 612056956 0.000000e+00 811.0
64 TraesCS1D01G371600 chr3D 95.882 170 6 1 248 416 8339990 8339821 1.770000e-69 274.0
65 TraesCS1D01G371600 chr3D 94.857 175 7 2 243 416 240009473 240009300 6.370000e-69 272.0
66 TraesCS1D01G371600 chr3D 93.855 179 9 2 246 422 479607580 479607402 8.240000e-68 268.0
67 TraesCS1D01G371600 chr3D 81.633 98 10 4 2319 2408 35037789 35037886 1.930000e-09 75.0
68 TraesCS1D01G371600 chr7A 85.976 1148 109 24 1294 2408 38746710 38747838 0.000000e+00 1181.0
69 TraesCS1D01G371600 chr7A 88.364 275 21 4 3779 4053 91935238 91934975 2.240000e-83 320.0
70 TraesCS1D01G371600 chr2D 85.702 1147 127 18 1294 2409 620147654 620148794 0.000000e+00 1175.0
71 TraesCS1D01G371600 chr2D 86.874 1059 86 26 1040 2052 619252736 619253787 0.000000e+00 1136.0
72 TraesCS1D01G371600 chr2D 85.113 1021 123 20 1043 2046 628557271 628556263 0.000000e+00 1016.0
73 TraesCS1D01G371600 chr2D 86.742 792 56 16 1043 1800 148815034 148814258 0.000000e+00 835.0
74 TraesCS1D01G371600 chr2D 91.610 584 37 6 1835 2408 148814254 148813673 0.000000e+00 797.0
75 TraesCS1D01G371600 chr2D 94.737 323 15 2 418 739 438855875 438855554 7.460000e-138 501.0
76 TraesCS1D01G371600 chr2D 93.958 331 17 3 418 747 119417479 119417807 9.650000e-137 497.0
77 TraesCS1D01G371600 chr2D 90.559 286 16 7 3776 4053 524013886 524014168 7.900000e-98 368.0
78 TraesCS1D01G371600 chr2D 91.051 257 19 4 3776 4031 7894541 7894794 1.330000e-90 344.0
79 TraesCS1D01G371600 chr2D 96.512 172 5 1 246 416 503882026 503882197 2.940000e-72 283.0
80 TraesCS1D01G371600 chr2D 94.857 175 8 1 243 416 119765253 119765427 6.370000e-69 272.0
81 TraesCS1D01G371600 chr2D 94.382 178 9 1 246 422 373148067 373147890 6.370000e-69 272.0
82 TraesCS1D01G371600 chrUn 86.624 942 96 13 1428 2344 101367111 101368047 0.000000e+00 1014.0
83 TraesCS1D01G371600 chrUn 90.590 542 34 9 216 743 30235182 30235720 0.000000e+00 702.0
84 TraesCS1D01G371600 chrUn 90.541 148 13 1 2637 2784 231827372 231827518 1.420000e-45 195.0
85 TraesCS1D01G371600 chrUn 90.541 148 13 1 2637 2784 474079294 474079440 1.420000e-45 195.0
86 TraesCS1D01G371600 chrUn 94.309 123 6 1 2697 2819 40475771 40475650 2.370000e-43 187.0
87 TraesCS1D01G371600 chrUn 83.333 132 21 1 2188 2319 147141186 147141316 2.440000e-23 121.0
88 TraesCS1D01G371600 chrUn 95.161 62 3 0 2758 2819 364179869 364179930 1.140000e-16 99.0
89 TraesCS1D01G371600 chr5A 84.947 857 97 19 1068 1903 84883733 84884578 0.000000e+00 839.0
90 TraesCS1D01G371600 chr5A 88.412 233 23 3 1039 1268 422230754 422230523 1.370000e-70 278.0
91 TraesCS1D01G371600 chr4D 88.530 558 55 4 1294 1847 490600232 490600784 0.000000e+00 667.0
92 TraesCS1D01G371600 chr4D 95.298 319 14 1 418 736 67180493 67180810 5.770000e-139 505.0
93 TraesCS1D01G371600 chr4D 92.754 276 16 4 3779 4053 264501004 264500732 3.620000e-106 396.0
94 TraesCS1D01G371600 chr4D 75.342 292 53 6 2135 2408 442446419 442446129 6.790000e-24 122.0
95 TraesCS1D01G371600 chr2B 95.556 315 12 2 420 733 69540517 69540830 2.070000e-138 503.0
96 TraesCS1D01G371600 chr5D 94.737 323 15 2 418 739 303182459 303182138 7.460000e-138 501.0
97 TraesCS1D01G371600 chr5D 91.286 241 18 3 3776 4015 327609734 327609972 4.820000e-85 326.0
98 TraesCS1D01G371600 chr5D 91.593 226 17 1 3828 4053 486214975 486214752 1.350000e-80 311.0
99 TraesCS1D01G371600 chr5D 94.915 177 7 2 241 416 75415152 75415327 4.920000e-70 276.0
100 TraesCS1D01G371600 chr5B 85.012 407 32 12 1040 1418 205653885 205654290 2.180000e-103 387.0
101 TraesCS1D01G371600 chr4B 91.197 284 17 6 3776 4053 437224342 437224623 3.650000e-101 379.0
102 TraesCS1D01G371600 chr3B 91.600 250 12 6 3784 4025 780624406 780624654 2.230000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G371600 chr1D 449750092 449755084 4992 False 9221.000000 9221 100.000000 1 4993 1 chr1D.!!$F2 4992
1 TraesCS1D01G371600 chr1D 449922725 449923665 940 True 929.000000 929 84.892000 2471 3418 1 chr1D.!!$R4 947
2 TraesCS1D01G371600 chr1D 449659601 449662374 2773 False 663.266667 1299 84.320333 99 4625 3 chr1D.!!$F5 4526
3 TraesCS1D01G371600 chr1D 449674076 449676838 2762 False 635.825000 1387 87.859000 129 4990 4 chr1D.!!$F6 4861
4 TraesCS1D01G371600 chr1D 449846794 449847740 946 False 488.000000 501 89.382500 2495 3418 2 chr1D.!!$F7 923
5 TraesCS1D01G371600 chr1D 450046509 450047119 610 False 448.000000 448 80.315000 2795 3418 1 chr1D.!!$F3 623
6 TraesCS1D01G371600 chr1D 450044189 450044852 663 True 422.000000 422 79.032000 2919 3569 1 chr1D.!!$R5 650
7 TraesCS1D01G371600 chr1D 449982519 449983434 915 True 415.500000 422 88.099500 2547 3417 2 chr1D.!!$R6 870
8 TraesCS1D01G371600 chr6D 199357450 199358872 1422 True 1428.000000 1428 85.456000 1035 2411 1 chr6D.!!$R1 1376
9 TraesCS1D01G371600 chr6D 448332542 448333670 1128 False 1242.000000 1242 86.819000 1294 2408 1 chr6D.!!$F3 1114
10 TraesCS1D01G371600 chr6D 401169757 401170468 711 True 944.000000 944 90.656000 1335 2046 1 chr6D.!!$R2 711
11 TraesCS1D01G371600 chr1A 544748274 544750609 2335 False 1168.000000 1410 87.047000 2523 4962 2 chr1A.!!$F6 2439
12 TraesCS1D01G371600 chr1A 13032325 13033007 682 False 942.000000 942 91.570000 1294 1978 1 chr1A.!!$F1 684
13 TraesCS1D01G371600 chr1A 545008421 545009498 1077 True 765.000000 765 80.232000 2547 3628 1 chr1A.!!$R1 1081
14 TraesCS1D01G371600 chr1A 545024279 545025252 973 True 619.000000 619 78.952000 2547 3569 1 chr1A.!!$R2 1022
15 TraesCS1D01G371600 chr1A 544933990 544934867 877 False 503.000000 839 86.880500 3595 4764 2 chr1A.!!$F8 1169
16 TraesCS1D01G371600 chr1A 544819039 544819670 631 False 488.000000 488 81.222000 4314 4965 1 chr1A.!!$F4 651
17 TraesCS1D01G371600 chr1A 544927619 544928853 1234 False 463.500000 806 86.047000 905 3593 2 chr1A.!!$F7 2688
18 TraesCS1D01G371600 chr1A 544999946 545001084 1138 False 347.000000 531 87.466500 907 3418 2 chr1A.!!$F9 2511
19 TraesCS1D01G371600 chr1B 615744316 615745197 881 True 832.000000 832 84.396000 2547 3417 1 chr1B.!!$R1 870
20 TraesCS1D01G371600 chr1B 615581714 615583984 2270 False 648.333333 1375 85.924667 2523 4872 3 chr1B.!!$F1 2349
21 TraesCS1D01G371600 chr1B 615624983 615627995 3012 False 505.975000 1105 86.026250 108 4969 4 chr1B.!!$F2 4861
22 TraesCS1D01G371600 chr1B 616565222 616565735 513 True 366.000000 366 80.639000 2919 3418 1 chr1B.!!$R2 499
23 TraesCS1D01G371600 chr1B 615731427 615733015 1588 False 341.500000 540 86.766500 1 3418 4 chr1B.!!$F3 3417
24 TraesCS1D01G371600 chr2A 102452313 102453730 1417 True 1341.000000 1341 84.443000 1043 2408 1 chr2A.!!$R1 1365
25 TraesCS1D01G371600 chr2A 139181758 139182910 1152 True 1212.000000 1212 86.258000 1296 2408 1 chr2A.!!$R2 1112
26 TraesCS1D01G371600 chr2A 700527344 700528160 816 False 869.000000 869 86.618000 1037 1820 1 chr2A.!!$F1 783
27 TraesCS1D01G371600 chr7D 46700427 46701813 1386 False 1332.000000 1332 84.468000 1039 2408 1 chr7D.!!$F1 1369
28 TraesCS1D01G371600 chr7D 576076136 576077156 1020 True 1053.000000 1053 86.089000 1043 2020 1 chr7D.!!$R2 977
29 TraesCS1D01G371600 chr7D 61501722 61502457 735 False 870.000000 870 88.054000 1294 2033 1 chr7D.!!$F2 739
30 TraesCS1D01G371600 chr6A 265859088 265860237 1149 False 1266.000000 1266 87.111000 1294 2408 1 chr6A.!!$F1 1114
31 TraesCS1D01G371600 chr3D 564315049 564316157 1108 False 1206.000000 1206 86.460000 1294 2408 1 chr3D.!!$F2 1114
32 TraesCS1D01G371600 chr3D 612056170 612056956 786 False 811.000000 811 85.894000 1040 1803 1 chr3D.!!$F3 763
33 TraesCS1D01G371600 chr7A 38746710 38747838 1128 False 1181.000000 1181 85.976000 1294 2408 1 chr7A.!!$F1 1114
34 TraesCS1D01G371600 chr2D 620147654 620148794 1140 False 1175.000000 1175 85.702000 1294 2409 1 chr2D.!!$F7 1115
35 TraesCS1D01G371600 chr2D 619252736 619253787 1051 False 1136.000000 1136 86.874000 1040 2052 1 chr2D.!!$F6 1012
36 TraesCS1D01G371600 chr2D 628556263 628557271 1008 True 1016.000000 1016 85.113000 1043 2046 1 chr2D.!!$R3 1003
37 TraesCS1D01G371600 chr2D 148813673 148815034 1361 True 816.000000 835 89.176000 1043 2408 2 chr2D.!!$R4 1365
38 TraesCS1D01G371600 chrUn 101367111 101368047 936 False 1014.000000 1014 86.624000 1428 2344 1 chrUn.!!$F2 916
39 TraesCS1D01G371600 chrUn 30235182 30235720 538 False 702.000000 702 90.590000 216 743 1 chrUn.!!$F1 527
40 TraesCS1D01G371600 chr5A 84883733 84884578 845 False 839.000000 839 84.947000 1068 1903 1 chr5A.!!$F1 835
41 TraesCS1D01G371600 chr4D 490600232 490600784 552 False 667.000000 667 88.530000 1294 1847 1 chr4D.!!$F2 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
902 1280 0.110373 CTAATTTTATCCCGCCGCGC 60.110 55.0 7.42 0.0 0.0 6.86 F
2103 2708 0.179468 TGCCCTATAGTGCCGGTTTC 59.821 55.0 1.90 0.0 0.0 2.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2812 0.625849 CCCATGAGCCCCTTTAGTGT 59.374 55.0 0.0 0.0 0.00 3.55 R
4031 5488 0.035152 TGCCAAGATGCAGTACCCAG 60.035 55.0 0.0 0.0 36.04 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 0.741326 TAGCTCGAGCATGACCTGAC 59.259 55.000 36.87 5.71 45.16 3.51
83 84 1.226802 CTCGAGCATGACCTGACGG 60.227 63.158 0.00 0.00 0.00 4.79
91 92 1.669440 TGACCTGACGGGCAGTAAC 59.331 57.895 10.51 1.35 45.79 2.50
94 95 1.079127 CCTGACGGGCAGTAACCTG 60.079 63.158 10.51 0.00 43.33 4.00
95 96 1.541310 CCTGACGGGCAGTAACCTGA 61.541 60.000 10.51 0.00 43.33 3.86
96 97 0.537188 CTGACGGGCAGTAACCTGAT 59.463 55.000 1.64 0.00 41.50 2.90
97 98 0.535335 TGACGGGCAGTAACCTGATC 59.465 55.000 0.00 0.00 41.50 2.92
104 105 0.249073 CAGTAACCTGATCGGCGAGG 60.249 60.000 17.22 14.10 41.50 4.63
105 158 1.591863 GTAACCTGATCGGCGAGGC 60.592 63.158 17.22 10.74 35.61 4.70
133 186 6.372981 TCGTAATCGAAGCGCATTATTAGTA 58.627 36.000 11.47 0.00 43.34 1.82
218 304 8.586570 CTTAATTAGCACTGTGGATCTAAGAG 57.413 38.462 10.21 5.43 0.00 2.85
327 425 2.707257 ACGGGAGGGACTTTTTCTACAA 59.293 45.455 0.00 0.00 41.55 2.41
437 536 5.412904 CCCCAGTCTGACTAAAAATTGTCTC 59.587 44.000 10.47 0.00 34.57 3.36
489 588 6.296259 CCTGACTAAAGAGGGGCTAAAACTAA 60.296 42.308 0.00 0.00 0.00 2.24
491 590 7.110155 TGACTAAAGAGGGGCTAAAACTAATG 58.890 38.462 0.00 0.00 0.00 1.90
503 602 8.789762 GGGCTAAAACTAATGTTGAGACTAAAA 58.210 33.333 0.00 0.00 36.39 1.52
549 648 7.980099 CGTACTAAAATGTGGATTAGTCCTCTT 59.020 37.037 5.79 0.00 45.32 2.85
565 664 6.941857 AGTCCTCTTTCTCCTCATTTAACTC 58.058 40.000 0.00 0.00 0.00 3.01
571 670 6.957020 TCTTTCTCCTCATTTAACTCCTCTCT 59.043 38.462 0.00 0.00 0.00 3.10
606 705 2.171003 GTTCTGGATTGGAGGGTTTGG 58.829 52.381 0.00 0.00 0.00 3.28
608 707 2.069775 TCTGGATTGGAGGGTTTGGAA 58.930 47.619 0.00 0.00 0.00 3.53
677 776 1.071385 CTAAGCATGGGTGAGGCTAGG 59.929 57.143 0.00 0.00 42.15 3.02
680 779 0.255890 GCATGGGTGAGGCTAGGAAA 59.744 55.000 0.00 0.00 0.00 3.13
710 809 6.497259 AGTCCCACTACTTTTAGTCATGAGAA 59.503 38.462 0.00 0.00 36.31 2.87
748 847 4.081642 GCACCCTCTTAATCTACAGTGTGA 60.082 45.833 5.88 1.85 0.00 3.58
749 848 5.568825 GCACCCTCTTAATCTACAGTGTGAA 60.569 44.000 5.88 0.00 0.00 3.18
794 908 0.250901 AGCGCTTCCTTGTTGTGGAT 60.251 50.000 2.64 0.00 33.09 3.41
813 927 0.834612 TGAAAGTCACGTCCCCAACT 59.165 50.000 0.00 0.00 0.00 3.16
814 928 1.210967 TGAAAGTCACGTCCCCAACTT 59.789 47.619 0.00 0.00 33.53 2.66
829 1011 2.106857 CCAACTTACCCCACACACCTTA 59.893 50.000 0.00 0.00 0.00 2.69
892 1270 3.729004 GCGCGCGCTCTAATTTTAT 57.271 47.368 44.38 0.00 38.26 1.40
893 1271 1.581514 GCGCGCGCTCTAATTTTATC 58.418 50.000 44.38 13.65 38.26 1.75
894 1272 1.721804 GCGCGCGCTCTAATTTTATCC 60.722 52.381 44.38 13.17 38.26 2.59
895 1273 1.136336 CGCGCGCTCTAATTTTATCCC 60.136 52.381 30.48 0.00 0.00 3.85
897 1275 1.136336 CGCGCTCTAATTTTATCCCGC 60.136 52.381 5.56 0.00 37.14 6.13
899 1277 1.459592 CGCTCTAATTTTATCCCGCCG 59.540 52.381 0.00 0.00 0.00 6.46
900 1278 1.197036 GCTCTAATTTTATCCCGCCGC 59.803 52.381 0.00 0.00 0.00 6.53
902 1280 0.110373 CTAATTTTATCCCGCCGCGC 60.110 55.000 7.42 0.00 0.00 6.86
958 1371 0.686112 CCTCACCTCACTCCCTCTCC 60.686 65.000 0.00 0.00 0.00 3.71
1000 1427 3.741830 TTGTCACGCACGCTTCCCA 62.742 57.895 0.00 0.00 0.00 4.37
1028 1455 3.666975 ACCCCACCATATATACCCACT 57.333 47.619 0.00 0.00 0.00 4.00
1041 1468 0.990282 ACCCACTAGGCAGCCATCAT 60.990 55.000 15.80 0.00 40.58 2.45
1060 1487 6.018669 CCATCATTAGTAGAAAACGGAGCTTC 60.019 42.308 0.00 0.00 0.00 3.86
1078 1505 2.298411 TCATTACCGGTTCGTAAGGC 57.702 50.000 15.04 0.00 31.67 4.35
1093 1520 2.437895 GGCCCTTTAGTGCCGGTC 60.438 66.667 1.90 0.00 38.00 4.79
1204 1636 4.155733 CGCGCTGTGGTATGGGGA 62.156 66.667 5.56 0.00 0.00 4.81
1349 1827 6.115446 GTGGACCACTCATTCTAAATCATCA 58.885 40.000 17.84 0.00 0.00 3.07
1388 1867 2.358721 CCCATCCTCTCACTACTCCAGT 60.359 54.545 0.00 0.00 38.32 4.00
1616 2153 8.380099 AGTAGTTTGACCATAGTTTGACCATAA 58.620 33.333 0.00 0.00 0.00 1.90
1624 2161 7.182060 ACCATAGTTTGACCATAATTTGACCT 58.818 34.615 0.00 0.00 0.00 3.85
1832 2420 4.268655 CGTCAAAATCGGATGCGC 57.731 55.556 0.00 0.00 0.00 6.09
1833 2421 1.297598 CGTCAAAATCGGATGCGCC 60.298 57.895 4.18 0.00 0.00 6.53
1949 2547 7.914465 TGCAAAACATGTCCAAATTTAAGTTC 58.086 30.769 0.00 0.00 0.00 3.01
2073 2678 3.777910 GATACACGCGGGGGTGGT 61.778 66.667 18.86 5.92 42.23 4.16
2103 2708 0.179468 TGCCCTATAGTGCCGGTTTC 59.821 55.000 1.90 0.00 0.00 2.78
2113 2718 0.400213 TGCCGGTTTCTGTCTCCAAT 59.600 50.000 1.90 0.00 0.00 3.16
2116 2721 1.067142 CCGGTTTCTGTCTCCAATCGA 60.067 52.381 0.00 0.00 0.00 3.59
2335 2940 4.955450 ACTAATGCATAGCCATTCAAACCA 59.045 37.500 0.00 0.00 36.80 3.67
2344 2949 4.599041 AGCCATTCAAACCAGCACTAATA 58.401 39.130 0.00 0.00 0.00 0.98
2345 2950 4.399303 AGCCATTCAAACCAGCACTAATAC 59.601 41.667 0.00 0.00 0.00 1.89
2346 2951 4.157656 GCCATTCAAACCAGCACTAATACA 59.842 41.667 0.00 0.00 0.00 2.29
2347 2952 5.163519 GCCATTCAAACCAGCACTAATACAT 60.164 40.000 0.00 0.00 0.00 2.29
2349 2954 7.642669 CCATTCAAACCAGCACTAATACATAG 58.357 38.462 0.00 0.00 37.66 2.23
2350 2955 6.677781 TTCAAACCAGCACTAATACATAGC 57.322 37.500 0.00 0.00 34.78 2.97
2351 2956 5.123227 TCAAACCAGCACTAATACATAGCC 58.877 41.667 0.00 0.00 34.78 3.93
2352 2957 4.771114 AACCAGCACTAATACATAGCCA 57.229 40.909 0.00 0.00 34.78 4.75
2399 3012 6.272318 TGTGCTTCACAATAGTTCCTTTTTG 58.728 36.000 0.00 0.00 41.69 2.44
2411 3024 6.803154 AGTTCCTTTTTGTACTAGTGCATC 57.197 37.500 14.75 0.00 0.00 3.91
2412 3025 5.408604 AGTTCCTTTTTGTACTAGTGCATCG 59.591 40.000 14.75 3.87 0.00 3.84
2413 3026 5.142061 TCCTTTTTGTACTAGTGCATCGA 57.858 39.130 14.75 0.00 0.00 3.59
2414 3027 5.730550 TCCTTTTTGTACTAGTGCATCGAT 58.269 37.500 14.75 0.00 0.00 3.59
2415 3028 5.810587 TCCTTTTTGTACTAGTGCATCGATC 59.189 40.000 14.75 0.00 0.00 3.69
2433 3046 2.032071 CGGGAGGAAGCAAACCGT 59.968 61.111 0.00 0.00 39.70 4.83
2436 3049 2.033194 GGAGGAAGCAAACCGTCGG 61.033 63.158 10.48 10.48 0.00 4.79
2877 3578 1.134530 CACTGCGGAGATCGAACGAC 61.135 60.000 12.26 3.60 42.43 4.34
2893 3594 4.143179 CGAACGACTTAGCGGAAAGATTTT 60.143 41.667 0.00 0.00 35.12 1.82
2920 3672 0.790207 ATGTTGATGCGTGTCGTGTC 59.210 50.000 0.00 0.00 0.00 3.67
2921 3673 1.127817 GTTGATGCGTGTCGTGTCG 59.872 57.895 0.00 0.00 0.00 4.35
2922 3674 1.299544 TTGATGCGTGTCGTGTCGT 60.300 52.632 0.00 0.00 0.00 4.34
2923 3675 1.544777 TTGATGCGTGTCGTGTCGTG 61.545 55.000 0.00 0.00 0.00 4.35
2924 3676 2.014554 GATGCGTGTCGTGTCGTGT 61.015 57.895 0.00 0.00 0.00 4.49
3026 3780 2.434428 ACAGCTGCATCAAGAAGAAGG 58.566 47.619 15.27 0.00 0.00 3.46
3035 3789 0.674895 CAAGAAGAAGGTCCGGCAGG 60.675 60.000 0.00 0.00 39.46 4.85
3126 3897 2.802106 GACGCGGAAGAGGAGGAG 59.198 66.667 12.47 0.00 34.13 3.69
3277 4078 4.083862 GAAAGGAGGGCGCGGACT 62.084 66.667 8.83 0.00 0.00 3.85
3278 4079 3.607370 GAAAGGAGGGCGCGGACTT 62.607 63.158 8.83 0.00 0.00 3.01
3295 4096 2.488087 CTTCGAAGACGCCGGGTTCT 62.488 60.000 20.74 0.00 39.58 3.01
3477 4284 4.537433 GAGCTGGCCTTCGCGGAT 62.537 66.667 6.13 0.00 35.02 4.18
3541 4383 3.568007 CCTCCCAAATTTCGAGTTCAACA 59.432 43.478 9.77 0.00 0.00 3.33
3707 4980 8.621286 CATTTCCAATTTTATAGGCGAGTTAGT 58.379 33.333 0.00 0.00 0.00 2.24
3777 5234 9.449719 AACTGTATTTTACTAGTAAGCATGCTT 57.550 29.630 33.70 33.70 39.83 3.91
3778 5235 8.883731 ACTGTATTTTACTAGTAAGCATGCTTG 58.116 33.333 37.21 24.69 37.47 4.01
3779 5236 9.098355 CTGTATTTTACTAGTAAGCATGCTTGA 57.902 33.333 37.21 22.81 37.47 3.02
3780 5237 8.879759 TGTATTTTACTAGTAAGCATGCTTGAC 58.120 33.333 37.21 28.52 37.47 3.18
3781 5238 9.099454 GTATTTTACTAGTAAGCATGCTTGACT 57.901 33.333 37.21 32.23 37.47 3.41
3783 5240 9.667107 ATTTTACTAGTAAGCATGCTTGACTAA 57.333 29.630 37.21 24.22 37.47 2.24
3784 5241 9.496873 TTTTACTAGTAAGCATGCTTGACTAAA 57.503 29.630 37.21 25.94 37.47 1.85
3785 5242 9.496873 TTTACTAGTAAGCATGCTTGACTAAAA 57.503 29.630 37.21 27.98 37.47 1.52
3786 5243 9.667107 TTACTAGTAAGCATGCTTGACTAAAAT 57.333 29.630 37.21 25.20 37.47 1.82
3788 5245 9.838339 ACTAGTAAGCATGCTTGACTAAAATAT 57.162 29.630 37.21 19.31 37.47 1.28
3844 5301 9.979578 TTATAACGTAAACCTACTTTCTGTGAA 57.020 29.630 0.00 0.00 0.00 3.18
3845 5302 6.839820 AACGTAAACCTACTTTCTGTGAAG 57.160 37.500 0.00 0.00 0.00 3.02
3846 5303 4.748600 ACGTAAACCTACTTTCTGTGAAGC 59.251 41.667 0.00 0.00 0.00 3.86
3847 5304 4.989168 CGTAAACCTACTTTCTGTGAAGCT 59.011 41.667 0.00 0.00 0.00 3.74
3848 5305 5.107453 CGTAAACCTACTTTCTGTGAAGCTG 60.107 44.000 0.00 0.00 0.00 4.24
3849 5306 4.689612 AACCTACTTTCTGTGAAGCTGA 57.310 40.909 0.00 0.00 0.00 4.26
3850 5307 4.689612 ACCTACTTTCTGTGAAGCTGAA 57.310 40.909 0.00 0.00 34.00 3.02
3851 5308 5.036117 ACCTACTTTCTGTGAAGCTGAAA 57.964 39.130 0.00 0.00 40.92 2.69
3852 5309 5.625150 ACCTACTTTCTGTGAAGCTGAAAT 58.375 37.500 0.00 0.00 41.80 2.17
3853 5310 5.703130 ACCTACTTTCTGTGAAGCTGAAATC 59.297 40.000 0.00 0.00 41.80 2.17
3854 5311 5.936956 CCTACTTTCTGTGAAGCTGAAATCT 59.063 40.000 0.00 0.00 41.80 2.40
3855 5312 7.099764 CCTACTTTCTGTGAAGCTGAAATCTA 58.900 38.462 0.00 0.00 41.80 1.98
3856 5313 7.604164 CCTACTTTCTGTGAAGCTGAAATCTAA 59.396 37.037 0.00 0.00 41.80 2.10
3857 5314 7.992754 ACTTTCTGTGAAGCTGAAATCTAAT 57.007 32.000 0.00 0.00 41.80 1.73
3858 5315 7.814642 ACTTTCTGTGAAGCTGAAATCTAATG 58.185 34.615 0.00 0.00 41.80 1.90
3859 5316 5.808042 TCTGTGAAGCTGAAATCTAATGC 57.192 39.130 0.00 0.00 0.00 3.56
3860 5317 5.247862 TCTGTGAAGCTGAAATCTAATGCA 58.752 37.500 0.00 0.00 0.00 3.96
3861 5318 5.706833 TCTGTGAAGCTGAAATCTAATGCAA 59.293 36.000 0.00 0.00 0.00 4.08
3862 5319 6.207221 TCTGTGAAGCTGAAATCTAATGCAAA 59.793 34.615 0.00 0.00 0.00 3.68
3863 5320 6.384224 TGTGAAGCTGAAATCTAATGCAAAG 58.616 36.000 0.00 0.00 0.00 2.77
3864 5321 6.207221 TGTGAAGCTGAAATCTAATGCAAAGA 59.793 34.615 4.75 4.75 0.00 2.52
3865 5322 6.746364 GTGAAGCTGAAATCTAATGCAAAGAG 59.254 38.462 8.00 0.00 0.00 2.85
3866 5323 5.246145 AGCTGAAATCTAATGCAAAGAGC 57.754 39.130 8.00 5.67 45.96 4.09
3884 5341 9.061435 GCAAAGAGCATATAATTTCTAAGTCCT 57.939 33.333 0.00 0.00 44.79 3.85
3925 5382 5.710513 TCATGCTTTATGAATACATGCCC 57.289 39.130 0.00 0.00 42.69 5.36
3926 5383 5.139001 TCATGCTTTATGAATACATGCCCA 58.861 37.500 0.00 0.00 42.69 5.36
3927 5384 5.597594 TCATGCTTTATGAATACATGCCCAA 59.402 36.000 0.00 0.00 42.69 4.12
3928 5385 5.518848 TGCTTTATGAATACATGCCCAAG 57.481 39.130 0.00 0.00 37.87 3.61
3929 5386 4.955450 TGCTTTATGAATACATGCCCAAGT 59.045 37.500 0.00 0.00 37.87 3.16
3930 5387 5.067674 TGCTTTATGAATACATGCCCAAGTC 59.932 40.000 0.00 0.00 37.87 3.01
3931 5388 5.507985 GCTTTATGAATACATGCCCAAGTCC 60.508 44.000 0.00 0.00 37.87 3.85
3932 5389 3.668141 ATGAATACATGCCCAAGTCCA 57.332 42.857 0.00 0.00 35.21 4.02
3933 5390 3.668141 TGAATACATGCCCAAGTCCAT 57.332 42.857 0.00 0.00 0.00 3.41
3934 5391 3.979911 TGAATACATGCCCAAGTCCATT 58.020 40.909 0.00 0.00 0.00 3.16
3935 5392 3.700539 TGAATACATGCCCAAGTCCATTG 59.299 43.478 0.00 0.00 38.74 2.82
3936 5393 1.473258 TACATGCCCAAGTCCATTGC 58.527 50.000 0.00 0.00 37.60 3.56
3937 5394 1.140161 CATGCCCAAGTCCATTGCG 59.860 57.895 0.00 0.00 37.60 4.85
3938 5395 1.304381 ATGCCCAAGTCCATTGCGT 60.304 52.632 0.00 0.00 37.60 5.24
3939 5396 0.034574 ATGCCCAAGTCCATTGCGTA 60.035 50.000 0.00 0.00 37.60 4.42
3940 5397 0.250945 TGCCCAAGTCCATTGCGTAA 60.251 50.000 0.00 0.00 37.60 3.18
3941 5398 0.170339 GCCCAAGTCCATTGCGTAAC 59.830 55.000 0.00 0.00 37.60 2.50
3942 5399 1.529226 CCCAAGTCCATTGCGTAACA 58.471 50.000 0.00 0.00 37.60 2.41
3943 5400 1.883275 CCCAAGTCCATTGCGTAACAA 59.117 47.619 0.00 0.00 44.01 2.83
3944 5401 2.351350 CCCAAGTCCATTGCGTAACAAC 60.351 50.000 0.00 0.00 42.27 3.32
3945 5402 2.552315 CCAAGTCCATTGCGTAACAACT 59.448 45.455 0.00 0.00 42.27 3.16
3946 5403 3.749088 CCAAGTCCATTGCGTAACAACTA 59.251 43.478 0.00 0.00 42.27 2.24
3947 5404 4.394920 CCAAGTCCATTGCGTAACAACTAT 59.605 41.667 0.00 0.00 42.27 2.12
3948 5405 5.447279 CCAAGTCCATTGCGTAACAACTATC 60.447 44.000 0.00 0.00 42.27 2.08
3949 5406 4.827692 AGTCCATTGCGTAACAACTATCA 58.172 39.130 0.00 0.00 42.27 2.15
3950 5407 5.242434 AGTCCATTGCGTAACAACTATCAA 58.758 37.500 0.00 0.00 42.27 2.57
3951 5408 5.703592 AGTCCATTGCGTAACAACTATCAAA 59.296 36.000 0.00 0.00 42.27 2.69
3952 5409 6.374333 AGTCCATTGCGTAACAACTATCAAAT 59.626 34.615 0.00 0.00 42.27 2.32
3953 5410 7.551262 AGTCCATTGCGTAACAACTATCAAATA 59.449 33.333 0.00 0.00 42.27 1.40
3954 5411 8.342634 GTCCATTGCGTAACAACTATCAAATAT 58.657 33.333 0.00 0.00 42.27 1.28
3955 5412 8.556194 TCCATTGCGTAACAACTATCAAATATC 58.444 33.333 0.00 0.00 42.27 1.63
3956 5413 7.530525 CCATTGCGTAACAACTATCAAATATCG 59.469 37.037 0.00 0.00 42.27 2.92
3957 5414 7.528481 TTGCGTAACAACTATCAAATATCGT 57.472 32.000 0.00 0.00 31.73 3.73
3958 5415 7.528481 TGCGTAACAACTATCAAATATCGTT 57.472 32.000 0.00 0.00 0.00 3.85
3959 5416 8.631676 TGCGTAACAACTATCAAATATCGTTA 57.368 30.769 0.00 0.00 0.00 3.18
3960 5417 9.085250 TGCGTAACAACTATCAAATATCGTTAA 57.915 29.630 0.00 0.00 0.00 2.01
3961 5418 9.349787 GCGTAACAACTATCAAATATCGTTAAC 57.650 33.333 0.00 0.00 0.00 2.01
3986 5443 9.645128 ACTAATTGATACAAATTCATCCCATGA 57.355 29.630 0.00 0.00 37.55 3.07
4002 5459 9.656040 TCATCCCATGAAGAAAATTAAATTGTG 57.344 29.630 0.00 0.00 36.11 3.33
4003 5460 8.885722 CATCCCATGAAGAAAATTAAATTGTGG 58.114 33.333 0.00 0.00 0.00 4.17
4004 5461 6.878389 TCCCATGAAGAAAATTAAATTGTGGC 59.122 34.615 0.00 0.00 0.00 5.01
4005 5462 6.093909 CCCATGAAGAAAATTAAATTGTGGCC 59.906 38.462 0.00 0.00 0.00 5.36
4006 5463 6.654161 CCATGAAGAAAATTAAATTGTGGCCA 59.346 34.615 0.00 0.00 0.00 5.36
4007 5464 7.174599 CCATGAAGAAAATTAAATTGTGGCCAA 59.825 33.333 7.24 0.00 34.45 4.52
4008 5465 7.727331 TGAAGAAAATTAAATTGTGGCCAAG 57.273 32.000 7.24 0.00 33.17 3.61
4009 5466 7.278875 TGAAGAAAATTAAATTGTGGCCAAGT 58.721 30.769 7.24 0.00 33.17 3.16
4010 5467 8.424918 TGAAGAAAATTAAATTGTGGCCAAGTA 58.575 29.630 7.24 0.00 33.17 2.24
4011 5468 9.435688 GAAGAAAATTAAATTGTGGCCAAGTAT 57.564 29.630 7.24 0.00 33.17 2.12
4028 5485 6.560253 CAAGTATATTTGGACTATGCACCC 57.440 41.667 0.00 0.00 0.00 4.61
4029 5486 5.242795 AGTATATTTGGACTATGCACCCC 57.757 43.478 0.00 0.00 0.00 4.95
4030 5487 3.525800 ATATTTGGACTATGCACCCCC 57.474 47.619 0.00 0.00 0.00 5.40
4044 5501 2.919043 CCCCCTGGGTACTGCATC 59.081 66.667 12.71 0.00 38.25 3.91
4052 5509 0.811281 GGGTACTGCATCTTGGCAAC 59.189 55.000 0.00 0.00 44.40 4.17
4077 5534 4.810790 ACACAGATGTACACACTTCTAGC 58.189 43.478 0.00 0.00 37.13 3.42
4086 5543 0.951040 ACACTTCTAGCGCAGTTGCC 60.951 55.000 11.47 0.00 37.91 4.52
4110 5567 3.571590 TCATAGCCAACAAACCAAACCT 58.428 40.909 0.00 0.00 0.00 3.50
4121 5578 1.241315 ACCAAACCTCGCGAATTGGG 61.241 55.000 33.24 27.40 45.22 4.12
4122 5579 1.506262 CAAACCTCGCGAATTGGGG 59.494 57.895 11.33 10.32 0.00 4.96
4267 5734 2.578021 TCCCTAGCAATTCCTGAAAGCT 59.422 45.455 12.70 12.70 38.60 3.74
4382 5878 4.069304 TGGAGTTATCCCGACAAAAGTTG 58.931 43.478 0.00 0.00 46.04 3.16
4384 5880 2.482721 AGTTATCCCGACAAAAGTTGCG 59.517 45.455 0.00 0.00 0.00 4.85
4461 6174 2.987413 GTGACGCACCATCAAATTGA 57.013 45.000 0.00 0.00 0.00 2.57
4639 6374 7.496346 AACTACCACATCTCTAGGATTTCAA 57.504 36.000 0.00 0.00 31.27 2.69
4641 6376 8.095452 ACTACCACATCTCTAGGATTTCAAAT 57.905 34.615 0.00 0.00 31.27 2.32
4754 6494 8.801715 AATGCCATCAAATAAAATCATACGTC 57.198 30.769 0.00 0.00 0.00 4.34
4755 6495 7.566760 TGCCATCAAATAAAATCATACGTCT 57.433 32.000 0.00 0.00 0.00 4.18
4771 6511 9.900710 ATCATACGTCTCAGATTTCTGTATTAC 57.099 33.333 7.42 2.19 44.12 1.89
4808 6549 3.676291 AAAAATTGCCGGCATACACTT 57.324 38.095 33.25 17.05 0.00 3.16
4813 6568 4.792521 ATTGCCGGCATACACTTAAAAA 57.207 36.364 33.25 11.26 0.00 1.94
4814 6569 3.562567 TGCCGGCATACACTTAAAAAC 57.437 42.857 29.03 0.00 0.00 2.43
4815 6570 2.885266 TGCCGGCATACACTTAAAAACA 59.115 40.909 29.03 0.00 0.00 2.83
4816 6571 3.508012 TGCCGGCATACACTTAAAAACAT 59.492 39.130 29.03 0.00 0.00 2.71
4817 6572 3.857093 GCCGGCATACACTTAAAAACATG 59.143 43.478 24.80 0.00 0.00 3.21
4818 6573 4.617298 GCCGGCATACACTTAAAAACATGT 60.617 41.667 24.80 0.00 0.00 3.21
4819 6574 5.392165 GCCGGCATACACTTAAAAACATGTA 60.392 40.000 24.80 0.00 32.38 2.29
4956 6718 5.932619 AAAACTAGGGAAATTACCATGGC 57.067 39.130 13.04 0.00 0.00 4.40
4969 6731 3.280197 ACCATGGCCAATAAAAATGCC 57.720 42.857 10.96 0.00 44.27 4.40
4970 6732 2.092484 ACCATGGCCAATAAAAATGCCC 60.092 45.455 10.96 0.00 43.35 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 2.223829 ACTTAATCTCGCCGATCACCTG 60.224 50.000 0.00 0.00 0.00 4.00
67 68 2.202797 CCCGTCAGGTCATGCTCG 60.203 66.667 0.00 0.00 35.12 5.03
69 70 3.320879 CTGCCCGTCAGGTCATGCT 62.321 63.158 0.00 0.00 39.15 3.79
70 71 2.821366 CTGCCCGTCAGGTCATGC 60.821 66.667 0.00 0.00 39.15 4.06
81 82 1.227263 CCGATCAGGTTACTGCCCG 60.227 63.158 0.00 0.00 44.54 6.13
83 84 1.883084 CGCCGATCAGGTTACTGCC 60.883 63.158 0.00 0.00 44.54 4.85
91 92 1.432270 GAAAAGCCTCGCCGATCAGG 61.432 60.000 0.00 0.00 44.97 3.86
94 95 0.526954 TACGAAAAGCCTCGCCGATC 60.527 55.000 0.00 0.00 42.69 3.69
95 96 0.108520 TTACGAAAAGCCTCGCCGAT 60.109 50.000 0.00 0.00 42.69 4.18
96 97 0.108520 ATTACGAAAAGCCTCGCCGA 60.109 50.000 0.00 0.00 42.69 5.54
97 98 0.300789 GATTACGAAAAGCCTCGCCG 59.699 55.000 0.00 0.00 42.69 6.46
120 173 5.854866 TCACGACAGTATACTAATAATGCGC 59.145 40.000 4.74 0.00 37.20 6.09
204 290 3.529533 CAAGCACCTCTTAGATCCACAG 58.470 50.000 0.00 0.00 32.74 3.66
206 292 2.501723 TCCAAGCACCTCTTAGATCCAC 59.498 50.000 0.00 0.00 32.74 4.02
208 294 4.141620 TGAATCCAAGCACCTCTTAGATCC 60.142 45.833 0.00 0.00 33.05 3.36
210 296 5.435291 CTTGAATCCAAGCACCTCTTAGAT 58.565 41.667 0.00 0.00 42.72 1.98
211 297 4.323792 CCTTGAATCCAAGCACCTCTTAGA 60.324 45.833 0.00 0.00 46.42 2.10
212 298 3.944015 CCTTGAATCCAAGCACCTCTTAG 59.056 47.826 0.00 0.00 46.42 2.18
214 300 2.556114 CCCTTGAATCCAAGCACCTCTT 60.556 50.000 0.00 0.00 46.42 2.85
215 301 1.005215 CCCTTGAATCCAAGCACCTCT 59.995 52.381 0.00 0.00 46.42 3.69
216 302 1.004745 TCCCTTGAATCCAAGCACCTC 59.995 52.381 0.00 0.00 46.42 3.85
217 303 1.075601 TCCCTTGAATCCAAGCACCT 58.924 50.000 0.00 0.00 46.42 4.00
218 304 1.177401 GTCCCTTGAATCCAAGCACC 58.823 55.000 0.00 0.00 46.42 5.01
229 315 2.580783 CCCCCTGAAATAAGTCCCTTGA 59.419 50.000 0.00 0.00 0.00 3.02
244 330 0.827507 CCTGAACCAAACACCCCCTG 60.828 60.000 0.00 0.00 0.00 4.45
249 335 2.067365 AAGTCCCTGAACCAAACACC 57.933 50.000 0.00 0.00 0.00 4.16
294 392 1.669440 CTCCCGTTTGGTTCCGAGA 59.331 57.895 0.00 0.00 34.77 4.04
297 395 2.359478 CCCTCCCGTTTGGTTCCG 60.359 66.667 0.00 0.00 34.77 4.30
298 396 1.303074 GTCCCTCCCGTTTGGTTCC 60.303 63.158 0.00 0.00 34.77 3.62
432 531 6.042781 TGGAACTTTAGCCTCTTAAAGAGACA 59.957 38.462 11.30 5.23 45.07 3.41
437 536 5.473504 TGCTTGGAACTTTAGCCTCTTAAAG 59.526 40.000 4.46 4.46 43.21 1.85
549 648 7.560796 AAAGAGAGGAGTTAAATGAGGAGAA 57.439 36.000 0.00 0.00 0.00 2.87
565 664 6.758886 AGAACTCGCATATGTTAAAAGAGAGG 59.241 38.462 4.29 0.00 31.64 3.69
571 670 7.415095 CCAATCCAGAACTCGCATATGTTAAAA 60.415 37.037 4.29 0.00 0.00 1.52
580 679 1.134280 CCTCCAATCCAGAACTCGCAT 60.134 52.381 0.00 0.00 0.00 4.73
581 680 0.250234 CCTCCAATCCAGAACTCGCA 59.750 55.000 0.00 0.00 0.00 5.10
650 749 4.272489 CCTCACCCATGCTTAGATCAAAA 58.728 43.478 0.00 0.00 0.00 2.44
653 752 1.141657 GCCTCACCCATGCTTAGATCA 59.858 52.381 0.00 0.00 0.00 2.92
654 753 1.419387 AGCCTCACCCATGCTTAGATC 59.581 52.381 0.00 0.00 29.17 2.75
658 757 1.131638 CCTAGCCTCACCCATGCTTA 58.868 55.000 0.00 0.00 36.57 3.09
680 779 9.449719 CATGACTAAAAGTAGTGGGACTAAAAT 57.550 33.333 0.00 0.00 40.82 1.82
710 809 4.080526 AGAGGGTGCTTGGATACGTTTTAT 60.081 41.667 0.00 0.00 42.51 1.40
721 820 4.080863 ACTGTAGATTAAGAGGGTGCTTGG 60.081 45.833 0.00 0.00 0.00 3.61
763 875 0.995728 GAAGCGCTTCTTTCCTCTCG 59.004 55.000 36.70 0.00 36.69 4.04
777 891 1.522668 TCATCCACAACAAGGAAGCG 58.477 50.000 0.00 0.00 38.93 4.68
794 908 0.834612 AGTTGGGGACGTGACTTTCA 59.165 50.000 0.00 0.00 0.00 2.69
813 927 3.773119 GAGAGATAAGGTGTGTGGGGTAA 59.227 47.826 0.00 0.00 0.00 2.85
814 928 3.012502 AGAGAGATAAGGTGTGTGGGGTA 59.987 47.826 0.00 0.00 0.00 3.69
829 1011 0.901124 GGGCACTGTGTCAGAGAGAT 59.099 55.000 15.06 0.00 35.18 2.75
882 1260 1.504359 CGCGGCGGGATAAAATTAGA 58.496 50.000 20.10 0.00 0.00 2.10
883 1261 0.110373 GCGCGGCGGGATAAAATTAG 60.110 55.000 28.78 0.00 0.00 1.73
884 1262 1.943293 GCGCGGCGGGATAAAATTA 59.057 52.632 28.78 0.00 0.00 1.40
905 1283 2.643272 TCGAAGCAACGCGAGAGT 59.357 55.556 15.93 0.00 32.13 3.24
909 1287 2.985117 TAGGCTCGAAGCAACGCGA 61.985 57.895 15.93 0.00 44.75 5.87
910 1288 2.506217 TAGGCTCGAAGCAACGCG 60.506 61.111 3.53 3.53 44.75 6.01
958 1371 2.507992 CAAGCTCACTCGGCGAGG 60.508 66.667 36.81 25.91 33.35 4.63
1000 1427 8.533329 TGGGTATATATGGTGGGGTATATATGT 58.467 37.037 0.00 0.00 35.31 2.29
1028 1455 5.887214 TTTCTACTAATGATGGCTGCCTA 57.113 39.130 21.03 6.76 0.00 3.93
1041 1468 6.815142 GGTAATGAAGCTCCGTTTTCTACTAA 59.185 38.462 0.00 0.00 0.00 2.24
1060 1487 1.292992 GGCCTTACGAACCGGTAATG 58.707 55.000 8.00 2.78 32.36 1.90
1078 1505 0.108138 CAGAGACCGGCACTAAAGGG 60.108 60.000 0.00 0.00 0.00 3.95
1155 1587 0.178973 GTGGTGGGCCTTTAGTGGTT 60.179 55.000 4.53 0.00 35.27 3.67
1283 1733 7.730332 AGGGGTGATTAGAGACTTTTGAAAATT 59.270 33.333 0.00 0.00 0.00 1.82
1284 1734 7.241628 AGGGGTGATTAGAGACTTTTGAAAAT 58.758 34.615 0.00 0.00 0.00 1.82
1289 1750 5.165961 TGAGGGGTGATTAGAGACTTTTG 57.834 43.478 0.00 0.00 0.00 2.44
1290 1751 7.182930 AGTTATGAGGGGTGATTAGAGACTTTT 59.817 37.037 0.00 0.00 0.00 2.27
1291 1752 6.674419 AGTTATGAGGGGTGATTAGAGACTTT 59.326 38.462 0.00 0.00 0.00 2.66
1292 1753 6.098982 CAGTTATGAGGGGTGATTAGAGACTT 59.901 42.308 0.00 0.00 0.00 3.01
1340 1818 3.020984 GGCCGGGAAGTTTGATGATTTA 58.979 45.455 2.18 0.00 0.00 1.40
1364 1842 2.035632 GAGTAGTGAGAGGATGGGTGG 58.964 57.143 0.00 0.00 0.00 4.61
1388 1867 3.701205 TGGAAGTTAAGCATGCTCAGA 57.299 42.857 22.93 6.75 0.00 3.27
1616 2153 7.507829 TGAATTTTGGTCAAATCAGGTCAAAT 58.492 30.769 0.00 0.00 33.60 2.32
1784 2372 6.262049 AGGCCGTTTTGCAAATTTTTAGAATT 59.738 30.769 13.65 0.00 0.00 2.17
1832 2420 4.358851 TCAAAATGTTCAGCACGAAAAGG 58.641 39.130 0.00 0.00 34.69 3.11
1833 2421 7.801547 ATATCAAAATGTTCAGCACGAAAAG 57.198 32.000 0.00 0.00 34.69 2.27
2064 2667 1.044611 ATTTTCAAACACCACCCCCG 58.955 50.000 0.00 0.00 0.00 5.73
2071 2676 6.099341 CACTATAGGGCAATTTTCAAACACC 58.901 40.000 4.43 0.00 0.00 4.16
2073 2678 5.337169 GGCACTATAGGGCAATTTTCAAACA 60.337 40.000 27.65 0.00 0.00 2.83
2113 2718 4.414846 AGGGGTCTTAACCTATAGTCTCGA 59.585 45.833 0.00 0.00 45.66 4.04
2116 2721 7.564292 CACTAAAGGGGTCTTAACCTATAGTCT 59.436 40.741 0.00 0.00 45.66 3.24
2184 2789 1.384525 TTTGTGACACAAACCGGGAG 58.615 50.000 26.08 0.00 42.55 4.30
2207 2812 0.625849 CCCATGAGCCCCTTTAGTGT 59.374 55.000 0.00 0.00 0.00 3.55
2330 2935 5.110814 TGGCTATGTATTAGTGCTGGTTT 57.889 39.130 0.00 0.00 0.00 3.27
2335 2940 6.179906 ACTGAATGGCTATGTATTAGTGCT 57.820 37.500 0.00 0.00 0.00 4.40
2344 2949 5.321102 TGGTTTGTAACTGAATGGCTATGT 58.679 37.500 0.00 0.00 0.00 2.29
2345 2950 5.163622 CCTGGTTTGTAACTGAATGGCTATG 60.164 44.000 0.00 0.00 0.00 2.23
2346 2951 4.949856 CCTGGTTTGTAACTGAATGGCTAT 59.050 41.667 0.00 0.00 0.00 2.97
2347 2952 4.042311 TCCTGGTTTGTAACTGAATGGCTA 59.958 41.667 0.00 0.00 0.00 3.93
2349 2954 3.057526 GTCCTGGTTTGTAACTGAATGGC 60.058 47.826 0.00 0.00 0.00 4.40
2350 2955 4.398319 AGTCCTGGTTTGTAACTGAATGG 58.602 43.478 0.00 0.00 0.00 3.16
2351 2956 7.174946 ACATTAGTCCTGGTTTGTAACTGAATG 59.825 37.037 0.00 3.54 0.00 2.67
2352 2957 7.174946 CACATTAGTCCTGGTTTGTAACTGAAT 59.825 37.037 0.00 0.00 0.00 2.57
2386 2999 7.277981 CGATGCACTAGTACAAAAAGGAACTAT 59.722 37.037 0.00 0.00 38.49 2.12
2390 3003 5.543714 TCGATGCACTAGTACAAAAAGGAA 58.456 37.500 0.00 0.00 0.00 3.36
2399 3012 1.068472 CCCGGATCGATGCACTAGTAC 60.068 57.143 17.54 0.00 0.00 2.73
2411 3024 1.090052 GTTTGCTTCCTCCCGGATCG 61.090 60.000 0.73 0.00 39.58 3.69
2412 3025 0.748367 GGTTTGCTTCCTCCCGGATC 60.748 60.000 0.73 0.00 39.58 3.36
2413 3026 1.303282 GGTTTGCTTCCTCCCGGAT 59.697 57.895 0.73 0.00 39.58 4.18
2414 3027 2.754375 GGTTTGCTTCCTCCCGGA 59.246 61.111 0.73 0.00 37.60 5.14
2415 3028 2.746277 CGGTTTGCTTCCTCCCGG 60.746 66.667 0.00 0.00 35.11 5.73
2456 3069 1.227973 GGATGGAGGGAATGGCGAC 60.228 63.158 0.00 0.00 0.00 5.19
2764 3409 3.005539 GGTCCTCCTCCTGCTGCA 61.006 66.667 0.88 0.88 0.00 4.41
2841 3505 2.894000 CAGTGCGAAAATAACACGAACG 59.106 45.455 0.00 0.00 40.06 3.95
2873 3574 3.435671 CCAAAATCTTTCCGCTAAGTCGT 59.564 43.478 0.00 0.00 0.00 4.34
2877 3578 3.682858 TCGTCCAAAATCTTTCCGCTAAG 59.317 43.478 0.00 0.00 0.00 2.18
2893 3594 2.200899 CACGCATCAACATATCGTCCA 58.799 47.619 0.00 0.00 0.00 4.02
2920 3672 4.627114 GCACGCACACACGACACG 62.627 66.667 0.00 0.00 36.70 4.49
2921 3673 4.627114 CGCACGCACACACGACAC 62.627 66.667 0.00 0.00 36.70 3.67
2923 3675 4.627114 CACGCACGCACACACGAC 62.627 66.667 0.00 0.00 36.70 4.34
2944 3698 1.226688 CGACGCGATCTGTGACCAT 60.227 57.895 15.93 0.00 0.00 3.55
3053 3807 1.430228 GGTTTGTCCGTTTGTGCGT 59.570 52.632 0.00 0.00 0.00 5.24
3054 3808 1.298788 GGGTTTGTCCGTTTGTGCG 60.299 57.895 0.00 0.00 37.00 5.34
3055 3809 0.387565 ATGGGTTTGTCCGTTTGTGC 59.612 50.000 0.00 0.00 37.00 4.57
3056 3810 1.269517 CCATGGGTTTGTCCGTTTGTG 60.270 52.381 2.85 0.00 37.00 3.33
3057 3811 1.036707 CCATGGGTTTGTCCGTTTGT 58.963 50.000 2.85 0.00 37.00 2.83
3058 3812 0.319469 GCCATGGGTTTGTCCGTTTG 60.319 55.000 15.13 0.00 37.00 2.93
3059 3813 1.468506 GGCCATGGGTTTGTCCGTTT 61.469 55.000 15.13 0.00 37.00 3.60
3060 3814 1.906333 GGCCATGGGTTTGTCCGTT 60.906 57.895 15.13 0.00 37.00 4.44
3064 3818 3.758931 GGCGGCCATGGGTTTGTC 61.759 66.667 15.62 0.00 0.00 3.18
3108 3879 3.114647 CTCCTCCTCTTCCGCGTCG 62.115 68.421 4.92 0.00 0.00 5.12
3276 4077 2.048503 AACCCGGCGTCTTCGAAG 60.049 61.111 19.35 19.35 39.71 3.79
3277 4078 2.048877 GAACCCGGCGTCTTCGAA 60.049 61.111 6.01 0.00 39.71 3.71
3278 4079 2.987547 AGAACCCGGCGTCTTCGA 60.988 61.111 6.01 0.00 39.71 3.71
3307 4108 2.939022 GTCCAACACGCAGCTGTC 59.061 61.111 16.64 6.83 0.00 3.51
3464 4268 2.099652 CTCCATATCCGCGAAGGCCA 62.100 60.000 8.23 0.00 40.77 5.36
3477 4284 3.004839 GCAGCGAGAACTCATACTCCATA 59.995 47.826 2.78 0.00 0.00 2.74
3593 4436 8.893219 AAAAATGGATGGAGAAAGAAAGAAAC 57.107 30.769 0.00 0.00 0.00 2.78
3707 4980 6.631971 TGTTCACATGCAAGATGAAGTAAA 57.368 33.333 10.04 0.00 33.16 2.01
3753 5210 9.098355 TCAAGCATGCTTACTAGTAAAATACAG 57.902 33.333 31.48 13.80 34.50 2.74
3818 5275 9.979578 TTCACAGAAAGTAGGTTTACGTTATAA 57.020 29.630 0.00 0.00 32.70 0.98
3819 5276 9.630098 CTTCACAGAAAGTAGGTTTACGTTATA 57.370 33.333 0.00 0.00 32.70 0.98
3820 5277 7.117379 GCTTCACAGAAAGTAGGTTTACGTTAT 59.883 37.037 0.00 0.00 32.70 1.89
3821 5278 6.421801 GCTTCACAGAAAGTAGGTTTACGTTA 59.578 38.462 0.00 0.00 32.70 3.18
3822 5279 5.235831 GCTTCACAGAAAGTAGGTTTACGTT 59.764 40.000 0.00 0.00 34.77 3.99
3823 5280 4.748600 GCTTCACAGAAAGTAGGTTTACGT 59.251 41.667 0.00 0.00 34.88 3.57
3824 5281 4.989168 AGCTTCACAGAAAGTAGGTTTACG 59.011 41.667 0.00 0.00 34.88 3.18
3825 5282 5.989777 TCAGCTTCACAGAAAGTAGGTTTAC 59.010 40.000 0.00 0.00 0.00 2.01
3826 5283 6.169557 TCAGCTTCACAGAAAGTAGGTTTA 57.830 37.500 0.00 0.00 0.00 2.01
3827 5284 5.036117 TCAGCTTCACAGAAAGTAGGTTT 57.964 39.130 0.00 0.00 0.00 3.27
3828 5285 4.689612 TCAGCTTCACAGAAAGTAGGTT 57.310 40.909 0.00 0.00 0.00 3.50
3829 5286 4.689612 TTCAGCTTCACAGAAAGTAGGT 57.310 40.909 0.00 0.00 0.00 3.08
3830 5287 5.936956 AGATTTCAGCTTCACAGAAAGTAGG 59.063 40.000 3.04 0.00 37.22 3.18
3831 5288 8.539770 TTAGATTTCAGCTTCACAGAAAGTAG 57.460 34.615 3.04 0.00 37.22 2.57
3832 5289 8.939929 CATTAGATTTCAGCTTCACAGAAAGTA 58.060 33.333 3.04 0.00 37.22 2.24
3833 5290 7.574592 GCATTAGATTTCAGCTTCACAGAAAGT 60.575 37.037 3.04 0.00 37.22 2.66
3834 5291 6.746364 GCATTAGATTTCAGCTTCACAGAAAG 59.254 38.462 3.04 0.00 37.22 2.62
3835 5292 6.207221 TGCATTAGATTTCAGCTTCACAGAAA 59.793 34.615 0.00 0.00 38.05 2.52
3836 5293 5.706833 TGCATTAGATTTCAGCTTCACAGAA 59.293 36.000 0.00 0.00 0.00 3.02
3837 5294 5.247862 TGCATTAGATTTCAGCTTCACAGA 58.752 37.500 0.00 0.00 0.00 3.41
3838 5295 5.556355 TGCATTAGATTTCAGCTTCACAG 57.444 39.130 0.00 0.00 0.00 3.66
3839 5296 5.963176 TTGCATTAGATTTCAGCTTCACA 57.037 34.783 0.00 0.00 0.00 3.58
3840 5297 6.615088 TCTTTGCATTAGATTTCAGCTTCAC 58.385 36.000 0.00 0.00 0.00 3.18
3841 5298 6.624423 GCTCTTTGCATTAGATTTCAGCTTCA 60.624 38.462 0.00 0.00 42.31 3.02
3842 5299 5.742926 GCTCTTTGCATTAGATTTCAGCTTC 59.257 40.000 0.00 0.00 42.31 3.86
3843 5300 5.648572 GCTCTTTGCATTAGATTTCAGCTT 58.351 37.500 0.00 0.00 42.31 3.74
3844 5301 5.246145 GCTCTTTGCATTAGATTTCAGCT 57.754 39.130 0.00 0.00 42.31 4.24
3858 5315 9.061435 AGGACTTAGAAATTATATGCTCTTTGC 57.939 33.333 0.00 0.00 43.25 3.68
3898 5355 9.865321 GGCATGTATTCATAAAGCATGATATTT 57.135 29.630 0.00 0.00 43.26 1.40
3899 5356 8.472413 GGGCATGTATTCATAAAGCATGATATT 58.528 33.333 0.00 0.00 43.26 1.28
3900 5357 7.616542 TGGGCATGTATTCATAAAGCATGATAT 59.383 33.333 0.00 0.00 43.26 1.63
3901 5358 6.947158 TGGGCATGTATTCATAAAGCATGATA 59.053 34.615 0.00 0.00 43.26 2.15
3902 5359 5.776208 TGGGCATGTATTCATAAAGCATGAT 59.224 36.000 0.00 0.00 43.26 2.45
3903 5360 5.139001 TGGGCATGTATTCATAAAGCATGA 58.861 37.500 0.00 0.00 42.07 3.07
3904 5361 5.456548 TGGGCATGTATTCATAAAGCATG 57.543 39.130 0.00 0.00 39.68 4.06
3905 5362 5.599656 ACTTGGGCATGTATTCATAAAGCAT 59.400 36.000 0.00 0.00 32.47 3.79
3906 5363 4.955450 ACTTGGGCATGTATTCATAAAGCA 59.045 37.500 0.00 0.00 32.47 3.91
3907 5364 5.507985 GGACTTGGGCATGTATTCATAAAGC 60.508 44.000 0.00 0.00 32.47 3.51
3908 5365 5.593909 TGGACTTGGGCATGTATTCATAAAG 59.406 40.000 0.00 0.00 32.47 1.85
3909 5366 5.514169 TGGACTTGGGCATGTATTCATAAA 58.486 37.500 0.00 0.00 32.47 1.40
3910 5367 5.122707 TGGACTTGGGCATGTATTCATAA 57.877 39.130 0.00 0.00 32.47 1.90
3911 5368 4.787135 TGGACTTGGGCATGTATTCATA 57.213 40.909 0.00 0.00 32.47 2.15
3912 5369 3.668141 TGGACTTGGGCATGTATTCAT 57.332 42.857 0.00 0.00 34.21 2.57
3913 5370 3.668141 ATGGACTTGGGCATGTATTCA 57.332 42.857 0.00 0.00 0.00 2.57
3914 5371 3.491447 GCAATGGACTTGGGCATGTATTC 60.491 47.826 0.00 0.00 35.25 1.75
3915 5372 2.431782 GCAATGGACTTGGGCATGTATT 59.568 45.455 0.00 0.00 35.25 1.89
3916 5373 2.034124 GCAATGGACTTGGGCATGTAT 58.966 47.619 0.00 0.00 35.25 2.29
3917 5374 1.473258 GCAATGGACTTGGGCATGTA 58.527 50.000 0.00 0.00 35.25 2.29
3918 5375 1.597797 CGCAATGGACTTGGGCATGT 61.598 55.000 0.00 0.00 40.41 3.21
3919 5376 1.140161 CGCAATGGACTTGGGCATG 59.860 57.895 0.00 0.00 40.41 4.06
3920 5377 3.607163 CGCAATGGACTTGGGCAT 58.393 55.556 0.00 0.00 40.41 4.40
3924 5381 2.552315 AGTTGTTACGCAATGGACTTGG 59.448 45.455 0.00 0.00 39.55 3.61
3925 5382 3.896648 AGTTGTTACGCAATGGACTTG 57.103 42.857 0.00 0.00 39.55 3.16
3926 5383 5.242434 TGATAGTTGTTACGCAATGGACTT 58.758 37.500 0.00 0.00 39.55 3.01
3927 5384 4.827692 TGATAGTTGTTACGCAATGGACT 58.172 39.130 0.00 0.00 39.55 3.85
3928 5385 5.539582 TTGATAGTTGTTACGCAATGGAC 57.460 39.130 0.00 0.00 39.55 4.02
3929 5386 6.751514 ATTTGATAGTTGTTACGCAATGGA 57.248 33.333 0.00 0.00 39.55 3.41
3930 5387 7.530525 CGATATTTGATAGTTGTTACGCAATGG 59.469 37.037 0.00 0.00 39.55 3.16
3931 5388 8.061857 ACGATATTTGATAGTTGTTACGCAATG 58.938 33.333 0.00 0.00 39.55 2.82
3932 5389 8.138365 ACGATATTTGATAGTTGTTACGCAAT 57.862 30.769 0.00 0.00 39.55 3.56
3933 5390 7.528481 ACGATATTTGATAGTTGTTACGCAA 57.472 32.000 0.00 0.00 34.16 4.85
3934 5391 7.528481 AACGATATTTGATAGTTGTTACGCA 57.472 32.000 0.00 0.00 0.00 5.24
3935 5392 9.349787 GTTAACGATATTTGATAGTTGTTACGC 57.650 33.333 0.00 0.00 0.00 4.42
3960 5417 9.645128 TCATGGGATGAATTTGTATCAATTAGT 57.355 29.630 0.00 0.00 36.11 2.24
3976 5433 9.656040 CACAATTTAATTTTCTTCATGGGATGA 57.344 29.630 0.00 0.00 37.55 2.92
3977 5434 8.885722 CCACAATTTAATTTTCTTCATGGGATG 58.114 33.333 0.00 0.00 0.00 3.51
3978 5435 7.553760 GCCACAATTTAATTTTCTTCATGGGAT 59.446 33.333 0.00 0.00 0.00 3.85
3979 5436 6.878389 GCCACAATTTAATTTTCTTCATGGGA 59.122 34.615 0.00 0.00 0.00 4.37
3980 5437 6.093909 GGCCACAATTTAATTTTCTTCATGGG 59.906 38.462 0.00 0.00 0.00 4.00
3981 5438 6.654161 TGGCCACAATTTAATTTTCTTCATGG 59.346 34.615 0.00 0.00 0.00 3.66
3982 5439 7.670009 TGGCCACAATTTAATTTTCTTCATG 57.330 32.000 0.00 0.00 0.00 3.07
3983 5440 7.938490 ACTTGGCCACAATTTAATTTTCTTCAT 59.062 29.630 3.88 0.00 35.73 2.57
3984 5441 7.278875 ACTTGGCCACAATTTAATTTTCTTCA 58.721 30.769 3.88 0.00 35.73 3.02
3985 5442 7.728847 ACTTGGCCACAATTTAATTTTCTTC 57.271 32.000 3.88 0.00 35.73 2.87
3991 5448 9.612066 CCAAATATACTTGGCCACAATTTAATT 57.388 29.630 3.88 0.00 39.55 1.40
3992 5449 8.986991 TCCAAATATACTTGGCCACAATTTAAT 58.013 29.630 3.88 0.00 44.79 1.40
3993 5450 8.254508 GTCCAAATATACTTGGCCACAATTTAA 58.745 33.333 3.88 0.00 44.79 1.52
3994 5451 7.617723 AGTCCAAATATACTTGGCCACAATTTA 59.382 33.333 3.88 0.00 44.79 1.40
3995 5452 6.440328 AGTCCAAATATACTTGGCCACAATTT 59.560 34.615 3.88 4.53 44.79 1.82
3996 5453 5.957774 AGTCCAAATATACTTGGCCACAATT 59.042 36.000 3.88 0.00 44.79 2.32
3997 5454 5.518865 AGTCCAAATATACTTGGCCACAAT 58.481 37.500 3.88 1.24 44.79 2.71
3998 5455 4.929479 AGTCCAAATATACTTGGCCACAA 58.071 39.130 3.88 0.00 44.79 3.33
3999 5456 4.584638 AGTCCAAATATACTTGGCCACA 57.415 40.909 3.88 0.00 44.79 4.17
4000 5457 5.048713 GCATAGTCCAAATATACTTGGCCAC 60.049 44.000 3.88 2.67 44.79 5.01
4001 5458 5.070001 GCATAGTCCAAATATACTTGGCCA 58.930 41.667 8.12 0.00 44.79 5.36
4002 5459 5.048713 GTGCATAGTCCAAATATACTTGGCC 60.049 44.000 8.12 0.00 44.79 5.36
4003 5460 5.048713 GGTGCATAGTCCAAATATACTTGGC 60.049 44.000 8.12 4.00 44.79 4.52
4004 5461 5.473504 GGGTGCATAGTCCAAATATACTTGG 59.526 44.000 6.62 6.62 46.27 3.61
4005 5462 5.473504 GGGGTGCATAGTCCAAATATACTTG 59.526 44.000 0.00 0.00 0.00 3.16
4006 5463 5.457633 GGGGGTGCATAGTCCAAATATACTT 60.458 44.000 0.00 0.00 0.00 2.24
4007 5464 4.042934 GGGGGTGCATAGTCCAAATATACT 59.957 45.833 0.00 0.00 0.00 2.12
4008 5465 4.332828 GGGGGTGCATAGTCCAAATATAC 58.667 47.826 0.00 0.00 0.00 1.47
4009 5466 4.650972 GGGGGTGCATAGTCCAAATATA 57.349 45.455 0.00 0.00 0.00 0.86
4010 5467 3.525800 GGGGGTGCATAGTCCAAATAT 57.474 47.619 0.00 0.00 0.00 1.28
4012 5469 3.924576 GGGGGTGCATAGTCCAAAT 57.075 52.632 0.00 0.00 0.00 2.32
4028 5485 0.107017 CAAGATGCAGTACCCAGGGG 60.107 60.000 11.37 6.87 42.03 4.79
4029 5486 0.107017 CCAAGATGCAGTACCCAGGG 60.107 60.000 2.85 2.85 0.00 4.45
4030 5487 0.749454 GCCAAGATGCAGTACCCAGG 60.749 60.000 0.00 0.00 0.00 4.45
4031 5488 0.035152 TGCCAAGATGCAGTACCCAG 60.035 55.000 0.00 0.00 36.04 4.45
4032 5489 0.403655 TTGCCAAGATGCAGTACCCA 59.596 50.000 0.00 0.00 43.21 4.51
4033 5490 0.811281 GTTGCCAAGATGCAGTACCC 59.189 55.000 0.00 0.00 43.21 3.69
4034 5491 1.826385 AGTTGCCAAGATGCAGTACC 58.174 50.000 0.00 0.00 43.21 3.34
4035 5492 3.751175 TGTAAGTTGCCAAGATGCAGTAC 59.249 43.478 0.00 0.00 43.21 2.73
4036 5493 3.751175 GTGTAAGTTGCCAAGATGCAGTA 59.249 43.478 0.00 0.00 43.21 2.74
4037 5494 2.554032 GTGTAAGTTGCCAAGATGCAGT 59.446 45.455 0.00 0.00 43.21 4.40
4038 5495 2.553602 TGTGTAAGTTGCCAAGATGCAG 59.446 45.455 0.00 0.00 43.21 4.41
4039 5496 2.553602 CTGTGTAAGTTGCCAAGATGCA 59.446 45.455 0.00 0.00 40.07 3.96
4040 5497 2.813754 TCTGTGTAAGTTGCCAAGATGC 59.186 45.455 0.00 0.00 0.00 3.91
4041 5498 4.456911 ACATCTGTGTAAGTTGCCAAGATG 59.543 41.667 21.23 21.23 36.63 2.90
4042 5499 4.655963 ACATCTGTGTAAGTTGCCAAGAT 58.344 39.130 1.26 1.26 36.63 2.40
4043 5500 4.085357 ACATCTGTGTAAGTTGCCAAGA 57.915 40.909 0.00 0.00 36.63 3.02
4044 5501 4.754618 TGTACATCTGTGTAAGTTGCCAAG 59.245 41.667 0.00 0.00 42.18 3.61
4052 5509 6.528423 GCTAGAAGTGTGTACATCTGTGTAAG 59.472 42.308 0.00 0.00 42.18 2.34
4077 5534 1.650912 GCTATGATGGGCAACTGCG 59.349 57.895 0.00 0.00 43.26 5.18
4086 5543 4.244862 GTTTGGTTTGTTGGCTATGATGG 58.755 43.478 0.00 0.00 0.00 3.51
4110 5567 5.640357 GTCAATATATTACCCCAATTCGCGA 59.360 40.000 3.71 3.71 0.00 5.87
4121 5578 9.939802 AAAGTAATCGAGGGTCAATATATTACC 57.060 33.333 0.00 6.60 31.70 2.85
4267 5734 0.178068 GTGCCTATCCTCCGAAGCAA 59.822 55.000 0.00 0.00 31.03 3.91
4346 5842 1.306642 ACTCCAGAGCTGACGTACGG 61.307 60.000 21.06 2.64 0.00 4.02
4382 5878 4.802563 AGAGACGTATTTACTTTTAGCCGC 59.197 41.667 0.00 0.00 0.00 6.53
4384 5880 6.019720 GCTCAGAGACGTATTTACTTTTAGCC 60.020 42.308 0.00 0.00 0.00 3.93
4755 6495 9.582431 CGTTTCTTAGGTAATACAGAAATCTGA 57.418 33.333 16.93 1.78 46.59 3.27
4771 6511 6.195798 GCAATTTTTATACGCCGTTTCTTAGG 59.804 38.462 0.00 0.00 0.00 2.69
4813 6568 8.038944 AGAACCACGACAAGTTAATATACATGT 58.961 33.333 2.69 2.69 33.11 3.21
4814 6569 8.420374 AGAACCACGACAAGTTAATATACATG 57.580 34.615 0.00 0.00 0.00 3.21
4827 6587 7.572353 GCAACTCAAAATATAGAACCACGACAA 60.572 37.037 0.00 0.00 0.00 3.18
4828 6588 6.128391 GCAACTCAAAATATAGAACCACGACA 60.128 38.462 0.00 0.00 0.00 4.35
4937 6699 2.856231 TGGCCATGGTAATTTCCCTAGT 59.144 45.455 14.67 0.00 0.00 2.57
4938 6700 3.593442 TGGCCATGGTAATTTCCCTAG 57.407 47.619 14.67 0.00 0.00 3.02
4939 6701 4.551215 ATTGGCCATGGTAATTTCCCTA 57.449 40.909 14.67 1.11 0.00 3.53
4956 6718 5.356291 TTGGATCAGGGCATTTTTATTGG 57.644 39.130 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.