Multiple sequence alignment - TraesCS1D01G371400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G371400 chr1D 100.000 2358 0 0 671 3028 449660066 449662423 0.000000e+00 4355.0
1 TraesCS1D01G371400 chr1D 88.181 1506 107 30 695 2179 449674357 449675812 0.000000e+00 1729.0
2 TraesCS1D01G371400 chr1D 88.534 1221 101 22 679 1869 449846529 449847740 0.000000e+00 1443.0
3 TraesCS1D01G371400 chr1D 85.212 1366 89 46 871 2180 449752500 449753808 0.000000e+00 1299.0
4 TraesCS1D01G371400 chr1D 86.240 1141 121 27 742 1869 449923842 449922725 0.000000e+00 1205.0
5 TraesCS1D01G371400 chr1D 100.000 437 0 0 1 437 449659396 449659832 0.000000e+00 808.0
6 TraesCS1D01G371400 chr1D 86.308 577 50 14 2417 2979 449754155 449754716 4.320000e-168 601.0
7 TraesCS1D01G371400 chr1D 81.903 641 81 19 679 1305 449983747 449983128 2.690000e-140 508.0
8 TraesCS1D01G371400 chr1D 88.770 374 36 4 2417 2789 449675879 449676247 1.280000e-123 453.0
9 TraesCS1D01G371400 chr1D 94.079 152 9 0 2182 2333 334248408 334248257 6.530000e-57 231.0
10 TraesCS1D01G371400 chr1D 94.000 150 9 0 2182 2331 371214906 371215055 8.450000e-56 228.0
11 TraesCS1D01G371400 chr1D 92.949 156 8 3 1 155 84781472 84781319 1.090000e-54 224.0
12 TraesCS1D01G371400 chr1D 92.763 152 11 0 2181 2332 114352321 114352170 1.410000e-53 220.0
13 TraesCS1D01G371400 chr1D 90.446 157 12 3 1 155 213336585 213336430 1.420000e-48 204.0
14 TraesCS1D01G371400 chr1D 88.043 92 1 2 236 327 449674076 449674157 1.920000e-17 100.0
15 TraesCS1D01G371400 chr1D 81.452 124 9 2 206 329 449750190 449750299 4.160000e-14 89.8
16 TraesCS1D01G371400 chr1B 88.014 1385 88 46 833 2180 615581593 615582936 0.000000e+00 1567.0
17 TraesCS1D01G371400 chr1B 88.230 1181 85 20 699 1869 615731879 615733015 0.000000e+00 1362.0
18 TraesCS1D01G371400 chr1B 92.320 625 43 3 1371 1994 615626000 615626620 0.000000e+00 883.0
19 TraesCS1D01G371400 chr1B 89.194 583 40 12 707 1271 615625319 615625896 0.000000e+00 706.0
20 TraesCS1D01G371400 chr1B 79.739 612 77 25 679 1281 616136954 616136381 1.690000e-107 399.0
21 TraesCS1D01G371400 chr1B 89.655 290 18 5 2332 2609 615582929 615583218 2.870000e-95 359.0
22 TraesCS1D01G371400 chr1B 90.146 274 19 4 150 419 615624919 615625188 1.730000e-92 350.0
23 TraesCS1D01G371400 chr1B 89.516 248 23 3 2458 2703 615627111 615627357 8.150000e-81 311.0
24 TraesCS1D01G371400 chr1B 90.043 231 17 4 2796 3021 615583582 615583811 8.210000e-76 294.0
25 TraesCS1D01G371400 chr1B 86.111 180 22 2 2802 2979 615627461 615627639 1.110000e-44 191.0
26 TraesCS1D01G371400 chr1B 90.323 62 6 0 1957 2018 615744284 615744223 6.960000e-12 82.4
27 TraesCS1D01G371400 chr1B 97.778 45 1 0 2653 2697 615583216 615583260 9.000000e-11 78.7
28 TraesCS1D01G371400 chr1A 87.924 1209 74 28 976 2152 544748274 544749442 0.000000e+00 1358.0
29 TraesCS1D01G371400 chr1A 85.772 1237 90 46 679 1869 544999888 545001084 0.000000e+00 1230.0
30 TraesCS1D01G371400 chr1A 90.111 809 50 16 1130 1938 544927968 544928746 0.000000e+00 1024.0
31 TraesCS1D01G371400 chr1A 83.408 1115 127 36 785 1869 545009701 545008615 0.000000e+00 981.0
32 TraesCS1D01G371400 chr1A 85.913 575 61 10 2417 2979 544934168 544934734 2.010000e-166 595.0
33 TraesCS1D01G371400 chr1A 84.634 410 43 9 679 1076 544927564 544927965 1.020000e-104 390.0
34 TraesCS1D01G371400 chr1A 83.014 365 43 10 2670 3021 544819039 544819397 2.270000e-81 313.0
35 TraesCS1D01G371400 chr1A 90.452 199 16 2 150 348 544765020 544764825 2.990000e-65 259.0
36 TraesCS1D01G371400 chr1A 84.758 269 25 8 152 419 544999547 544999800 3.870000e-64 255.0
37 TraesCS1D01G371400 chr1A 84.541 207 8 12 150 355 544747703 544747886 1.850000e-42 183.0
38 TraesCS1D01G371400 chr1A 90.741 108 9 1 2056 2163 544933988 544934094 3.150000e-30 143.0
39 TraesCS1D01G371400 chr1A 81.319 182 14 11 1927 2091 545008599 545008421 2.450000e-26 130.0
40 TraesCS1D01G371400 chr3B 92.258 155 8 4 1 153 797124406 797124254 1.830000e-52 217.0
41 TraesCS1D01G371400 chr4D 91.139 158 11 3 4 159 46884713 46884557 8.510000e-51 211.0
42 TraesCS1D01G371400 chr4D 89.333 150 10 1 2182 2331 75272912 75272769 1.850000e-42 183.0
43 TraesCS1D01G371400 chr6D 91.333 150 8 1 2183 2332 324597200 324597056 1.840000e-47 200.0
44 TraesCS1D01G371400 chr6D 88.957 163 13 5 1 159 107835200 107835361 2.380000e-46 196.0
45 TraesCS1D01G371400 chr7D 90.260 154 11 4 1 152 150651331 150651482 6.620000e-47 198.0
46 TraesCS1D01G371400 chr7D 88.415 164 16 3 1 162 48844687 48844525 8.570000e-46 195.0
47 TraesCS1D01G371400 chr2D 90.132 152 12 3 1 150 103019770 103019620 8.570000e-46 195.0
48 TraesCS1D01G371400 chr2D 90.604 149 10 4 1 147 502845762 502845908 8.570000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G371400 chr1D 449659396 449662423 3027 False 2581.500000 4355 100.000000 1 3028 2 chr1D.!!$F3 3027
1 TraesCS1D01G371400 chr1D 449846529 449847740 1211 False 1443.000000 1443 88.534000 679 1869 1 chr1D.!!$F2 1190
2 TraesCS1D01G371400 chr1D 449922725 449923842 1117 True 1205.000000 1205 86.240000 742 1869 1 chr1D.!!$R5 1127
3 TraesCS1D01G371400 chr1D 449674076 449676247 2171 False 760.666667 1729 88.331333 236 2789 3 chr1D.!!$F4 2553
4 TraesCS1D01G371400 chr1D 449750190 449754716 4526 False 663.266667 1299 84.324000 206 2979 3 chr1D.!!$F5 2773
5 TraesCS1D01G371400 chr1D 449983128 449983747 619 True 508.000000 508 81.903000 679 1305 1 chr1D.!!$R6 626
6 TraesCS1D01G371400 chr1B 615731879 615733015 1136 False 1362.000000 1362 88.230000 699 1869 1 chr1B.!!$F1 1170
7 TraesCS1D01G371400 chr1B 615581593 615583811 2218 False 574.675000 1567 91.372500 833 3021 4 chr1B.!!$F2 2188
8 TraesCS1D01G371400 chr1B 615624919 615627639 2720 False 488.200000 883 89.457400 150 2979 5 chr1B.!!$F3 2829
9 TraesCS1D01G371400 chr1B 616136381 616136954 573 True 399.000000 399 79.739000 679 1281 1 chr1B.!!$R2 602
10 TraesCS1D01G371400 chr1A 544747703 544749442 1739 False 770.500000 1358 86.232500 150 2152 2 chr1A.!!$F2 2002
11 TraesCS1D01G371400 chr1A 544999547 545001084 1537 False 742.500000 1230 85.265000 152 1869 2 chr1A.!!$F5 1717
12 TraesCS1D01G371400 chr1A 544927564 544928746 1182 False 707.000000 1024 87.372500 679 1938 2 chr1A.!!$F3 1259
13 TraesCS1D01G371400 chr1A 545008421 545009701 1280 True 555.500000 981 82.363500 785 2091 2 chr1A.!!$R2 1306
14 TraesCS1D01G371400 chr1A 544933988 544934734 746 False 369.000000 595 88.327000 2056 2979 2 chr1A.!!$F4 923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.110147 TACGTTTGAATTTGCCGCGG 60.110 50.0 24.05 24.05 0.0 6.46 F
436 1019 0.178950 TCTCTCCCTGACACAGTGCT 60.179 55.0 0.00 0.00 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 3822 0.324943 AGAACTGGCCGTACAATGCT 59.675 50.0 0.0 0.0 0.00 3.79 R
2253 4652 0.039527 GGTGTGTTGCCGTTTGGATC 60.040 55.0 0.0 0.0 37.49 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.529634 TGACTACGTTTGAATTTGCCG 57.470 42.857 0.00 0.00 0.00 5.69
23 24 2.239201 GACTACGTTTGAATTTGCCGC 58.761 47.619 0.00 0.00 0.00 6.53
24 25 1.246970 CTACGTTTGAATTTGCCGCG 58.753 50.000 0.00 0.00 0.00 6.46
25 26 0.110147 TACGTTTGAATTTGCCGCGG 60.110 50.000 24.05 24.05 0.00 6.46
26 27 2.715849 CGTTTGAATTTGCCGCGGC 61.716 57.895 42.35 42.35 42.35 6.53
27 28 1.372872 GTTTGAATTTGCCGCGGCT 60.373 52.632 45.79 29.96 42.51 5.52
28 29 0.943835 GTTTGAATTTGCCGCGGCTT 60.944 50.000 45.79 34.00 42.51 4.35
29 30 0.943359 TTTGAATTTGCCGCGGCTTG 60.943 50.000 45.79 14.15 42.51 4.01
30 31 2.506881 GAATTTGCCGCGGCTTGG 60.507 61.111 45.79 13.73 42.51 3.61
31 32 3.987863 GAATTTGCCGCGGCTTGGG 62.988 63.158 45.79 12.90 42.51 4.12
68 69 3.911137 GCTTGGGAGCTAGGTTGC 58.089 61.111 0.00 0.00 45.65 4.17
69 70 1.750780 GCTTGGGAGCTAGGTTGCC 60.751 63.158 0.00 0.00 45.65 4.52
70 71 1.077429 CTTGGGAGCTAGGTTGCCC 60.077 63.158 11.02 11.02 41.08 5.36
71 72 2.558380 CTTGGGAGCTAGGTTGCCCC 62.558 65.000 14.45 12.14 39.93 5.80
72 73 3.810188 GGGAGCTAGGTTGCCCCC 61.810 72.222 7.35 4.25 43.65 5.40
86 87 3.626924 CCCCCGGGGCGAATCTAG 61.627 72.222 36.20 14.45 35.35 2.43
87 88 4.315941 CCCCGGGGCGAATCTAGC 62.316 72.222 31.01 0.00 0.00 3.42
88 89 3.546543 CCCGGGGCGAATCTAGCA 61.547 66.667 14.71 0.00 36.08 3.49
89 90 2.504032 CCGGGGCGAATCTAGCAA 59.496 61.111 0.00 0.00 36.08 3.91
90 91 1.887707 CCGGGGCGAATCTAGCAAC 60.888 63.158 0.00 0.00 36.08 4.17
91 92 2.237751 CGGGGCGAATCTAGCAACG 61.238 63.158 0.00 0.00 36.08 4.10
92 93 1.887707 GGGGCGAATCTAGCAACGG 60.888 63.158 0.00 0.00 36.08 4.44
93 94 1.153429 GGGCGAATCTAGCAACGGT 60.153 57.895 0.00 0.00 36.08 4.83
94 95 0.743345 GGGCGAATCTAGCAACGGTT 60.743 55.000 0.00 0.00 36.08 4.44
95 96 0.651031 GGCGAATCTAGCAACGGTTC 59.349 55.000 0.00 0.00 36.08 3.62
96 97 0.297820 GCGAATCTAGCAACGGTTCG 59.702 55.000 9.90 9.90 43.10 3.95
97 98 0.297820 CGAATCTAGCAACGGTTCGC 59.702 55.000 3.08 7.05 35.83 4.70
98 99 0.651031 GAATCTAGCAACGGTTCGCC 59.349 55.000 10.32 0.00 0.00 5.54
114 115 3.365265 CCGCAGGCCGCTCTTTTT 61.365 61.111 15.78 0.00 46.14 1.94
115 116 2.176792 CGCAGGCCGCTCTTTTTC 59.823 61.111 15.78 0.00 39.08 2.29
116 117 2.176792 GCAGGCCGCTCTTTTTCG 59.823 61.111 11.61 0.00 37.77 3.46
121 122 4.460873 CCGCTCTTTTTCGGCGCC 62.461 66.667 19.07 19.07 46.29 6.53
122 123 4.460873 CGCTCTTTTTCGGCGCCC 62.461 66.667 23.46 2.84 42.28 6.13
123 124 3.056328 GCTCTTTTTCGGCGCCCT 61.056 61.111 23.46 0.00 0.00 5.19
124 125 2.870372 CTCTTTTTCGGCGCCCTG 59.130 61.111 23.46 8.15 0.00 4.45
125 126 1.671054 CTCTTTTTCGGCGCCCTGA 60.671 57.895 23.46 10.94 0.00 3.86
126 127 1.639298 CTCTTTTTCGGCGCCCTGAG 61.639 60.000 23.46 14.68 0.00 3.35
127 128 2.671619 TTTTTCGGCGCCCTGAGG 60.672 61.111 23.46 6.36 0.00 3.86
137 138 4.785453 CCCTGAGGGCTGAACGGC 62.785 72.222 3.66 0.00 35.35 5.68
138 139 3.710722 CCTGAGGGCTGAACGGCT 61.711 66.667 5.60 0.00 38.46 5.52
139 140 2.435586 CTGAGGGCTGAACGGCTG 60.436 66.667 5.60 0.00 38.46 4.85
140 141 3.965539 CTGAGGGCTGAACGGCTGG 62.966 68.421 0.00 0.00 38.46 4.85
141 142 3.706373 GAGGGCTGAACGGCTGGA 61.706 66.667 0.00 0.00 38.46 3.86
142 143 3.672295 GAGGGCTGAACGGCTGGAG 62.672 68.421 0.00 0.00 38.46 3.86
143 144 3.706373 GGGCTGAACGGCTGGAGA 61.706 66.667 0.00 0.00 38.46 3.71
144 145 2.586792 GGCTGAACGGCTGGAGAT 59.413 61.111 0.00 0.00 34.85 2.75
145 146 1.817099 GGCTGAACGGCTGGAGATG 60.817 63.158 0.00 0.00 34.85 2.90
146 147 2.467826 GCTGAACGGCTGGAGATGC 61.468 63.158 0.00 0.00 0.00 3.91
147 148 1.220206 CTGAACGGCTGGAGATGCT 59.780 57.895 0.00 0.00 0.00 3.79
148 149 0.809241 CTGAACGGCTGGAGATGCTC 60.809 60.000 0.00 0.00 0.00 4.26
194 195 3.131933 GCAGTAATCTCTCCTTCTCAGCA 59.868 47.826 0.00 0.00 0.00 4.41
196 197 3.960102 AGTAATCTCTCCTTCTCAGCAGG 59.040 47.826 0.00 0.00 0.00 4.85
273 274 2.633299 GCGATTCTTAATTGCAGAGCG 58.367 47.619 6.93 0.00 45.70 5.03
311 312 2.192175 GATGGGCTACCGTTGGGG 59.808 66.667 0.00 0.00 40.75 4.96
335 864 4.506838 CTTAATTAGCAGTGTCGCACTC 57.493 45.455 9.15 5.74 43.43 3.51
360 893 3.827898 AGTGTCCGGCGAGCTAGC 61.828 66.667 9.30 10.75 0.00 3.42
374 907 3.788616 CTAGCAGCTGGGCTCTCGC 62.789 68.421 17.12 0.00 44.54 5.03
436 1019 0.178950 TCTCTCCCTGACACAGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
693 1276 4.549458 GCGTACTACTATTTTATCCCGCA 58.451 43.478 0.00 0.00 37.52 5.69
795 1415 0.451383 CTCGCTCACTCACTCCTCTG 59.549 60.000 0.00 0.00 0.00 3.35
1258 3312 3.068064 TCGCGCTCCACCAGATCA 61.068 61.111 5.56 0.00 0.00 2.92
1314 3369 2.225491 TGCAATGCGTTCTTCAGTTACC 59.775 45.455 0.00 0.00 0.00 2.85
1330 3385 7.048629 TCAGTTACCATTGCAATTTTTCAGA 57.951 32.000 9.83 0.29 0.00 3.27
1336 3429 4.449743 CCATTGCAATTTTTCAGACAGTGG 59.550 41.667 9.83 0.42 0.00 4.00
1342 3435 2.260844 TTTTCAGACAGTGGGCTGAG 57.739 50.000 14.89 0.00 45.28 3.35
1343 3436 1.131638 TTTCAGACAGTGGGCTGAGT 58.868 50.000 14.89 0.00 45.28 3.41
1345 3438 0.760567 TCAGACAGTGGGCTGAGTGT 60.761 55.000 12.34 0.00 45.28 3.55
1659 3793 3.291101 GACTACGGCGCTGGGTTCA 62.291 63.158 22.44 0.00 0.00 3.18
1671 3805 2.273912 GGGTTCACCGACGACCTCT 61.274 63.158 0.00 0.00 36.71 3.69
1674 3808 2.927580 TTCACCGACGACCTCTGCC 61.928 63.158 0.00 0.00 0.00 4.85
2028 4177 7.409465 AATTTCGAGTTCAACTACTTCTGAC 57.591 36.000 0.00 0.00 0.00 3.51
2152 4551 7.446319 TGAGGTCATTTATAGCATCATTTCCAG 59.554 37.037 0.00 0.00 0.00 3.86
2180 4579 4.473477 AGGCGAGTTAGCTTACTTCATT 57.527 40.909 6.86 0.00 37.29 2.57
2181 4580 4.184629 AGGCGAGTTAGCTTACTTCATTG 58.815 43.478 6.86 0.00 37.29 2.82
2182 4581 4.081642 AGGCGAGTTAGCTTACTTCATTGA 60.082 41.667 6.86 0.00 37.29 2.57
2183 4582 4.268884 GGCGAGTTAGCTTACTTCATTGAG 59.731 45.833 6.86 0.00 37.29 3.02
2184 4583 4.865365 GCGAGTTAGCTTACTTCATTGAGT 59.135 41.667 6.86 0.00 0.00 3.41
2185 4584 5.004916 GCGAGTTAGCTTACTTCATTGAGTC 59.995 44.000 6.86 0.00 0.00 3.36
2186 4585 6.326375 CGAGTTAGCTTACTTCATTGAGTCT 58.674 40.000 6.86 0.00 0.00 3.24
2187 4586 6.252441 CGAGTTAGCTTACTTCATTGAGTCTG 59.748 42.308 6.86 0.00 0.00 3.51
2188 4587 6.402222 AGTTAGCTTACTTCATTGAGTCTGG 58.598 40.000 0.00 0.00 0.00 3.86
2189 4588 3.604582 AGCTTACTTCATTGAGTCTGGC 58.395 45.455 0.00 0.00 0.00 4.85
2190 4589 3.262915 AGCTTACTTCATTGAGTCTGGCT 59.737 43.478 0.00 0.00 0.00 4.75
2191 4590 4.467795 AGCTTACTTCATTGAGTCTGGCTA 59.532 41.667 0.00 0.00 31.78 3.93
2192 4591 5.130145 AGCTTACTTCATTGAGTCTGGCTAT 59.870 40.000 0.00 0.00 31.78 2.97
2193 4592 5.236047 GCTTACTTCATTGAGTCTGGCTATG 59.764 44.000 0.00 0.00 0.00 2.23
2194 4593 3.539604 ACTTCATTGAGTCTGGCTATGC 58.460 45.455 0.00 0.00 0.00 3.14
2195 4594 2.229675 TCATTGAGTCTGGCTATGCG 57.770 50.000 0.00 0.00 0.00 4.73
2196 4595 1.482182 TCATTGAGTCTGGCTATGCGT 59.518 47.619 0.00 0.00 0.00 5.24
2197 4596 2.693074 TCATTGAGTCTGGCTATGCGTA 59.307 45.455 0.00 0.00 0.00 4.42
2198 4597 2.579207 TTGAGTCTGGCTATGCGTAC 57.421 50.000 0.00 0.00 0.00 3.67
2199 4598 0.380733 TGAGTCTGGCTATGCGTACG 59.619 55.000 11.84 11.84 0.00 3.67
2200 4599 0.661552 GAGTCTGGCTATGCGTACGA 59.338 55.000 21.65 4.52 0.00 3.43
2201 4600 1.267261 GAGTCTGGCTATGCGTACGAT 59.733 52.381 21.65 12.04 0.00 3.73
2202 4601 1.681793 AGTCTGGCTATGCGTACGATT 59.318 47.619 21.65 7.58 0.00 3.34
2203 4602 2.052157 GTCTGGCTATGCGTACGATTC 58.948 52.381 21.65 1.31 0.00 2.52
2204 4603 1.954382 TCTGGCTATGCGTACGATTCT 59.046 47.619 21.65 1.90 0.00 2.40
2205 4604 2.361119 TCTGGCTATGCGTACGATTCTT 59.639 45.455 21.65 2.20 0.00 2.52
2206 4605 2.469826 TGGCTATGCGTACGATTCTTG 58.530 47.619 21.65 4.33 0.00 3.02
2207 4606 1.192534 GGCTATGCGTACGATTCTTGC 59.807 52.381 21.65 13.75 0.00 4.01
2208 4607 2.128035 GCTATGCGTACGATTCTTGCT 58.872 47.619 21.65 0.00 0.00 3.91
2209 4608 2.540101 GCTATGCGTACGATTCTTGCTT 59.460 45.455 21.65 0.00 0.00 3.91
2210 4609 3.602491 GCTATGCGTACGATTCTTGCTTG 60.602 47.826 21.65 0.00 0.00 4.01
2211 4610 1.790755 TGCGTACGATTCTTGCTTGT 58.209 45.000 21.65 0.00 0.00 3.16
2212 4611 1.724623 TGCGTACGATTCTTGCTTGTC 59.275 47.619 21.65 0.00 0.00 3.18
2213 4612 1.060698 GCGTACGATTCTTGCTTGTCC 59.939 52.381 21.65 0.00 0.00 4.02
2214 4613 1.320555 CGTACGATTCTTGCTTGTCCG 59.679 52.381 10.44 0.00 0.00 4.79
2215 4614 2.602878 GTACGATTCTTGCTTGTCCGA 58.397 47.619 0.00 0.00 0.00 4.55
2216 4615 2.386661 ACGATTCTTGCTTGTCCGAT 57.613 45.000 0.00 0.00 0.00 4.18
2217 4616 2.699954 ACGATTCTTGCTTGTCCGATT 58.300 42.857 0.00 0.00 0.00 3.34
2218 4617 3.074412 ACGATTCTTGCTTGTCCGATTT 58.926 40.909 0.00 0.00 0.00 2.17
2219 4618 3.120199 ACGATTCTTGCTTGTCCGATTTG 60.120 43.478 0.00 0.00 0.00 2.32
2220 4619 3.125146 CGATTCTTGCTTGTCCGATTTGA 59.875 43.478 0.00 0.00 0.00 2.69
2221 4620 4.201851 CGATTCTTGCTTGTCCGATTTGAT 60.202 41.667 0.00 0.00 0.00 2.57
2222 4621 5.006649 CGATTCTTGCTTGTCCGATTTGATA 59.993 40.000 0.00 0.00 0.00 2.15
2223 4622 5.545658 TTCTTGCTTGTCCGATTTGATAC 57.454 39.130 0.00 0.00 0.00 2.24
2224 4623 3.616821 TCTTGCTTGTCCGATTTGATACG 59.383 43.478 0.00 0.00 0.00 3.06
2225 4624 3.239587 TGCTTGTCCGATTTGATACGA 57.760 42.857 0.00 0.00 0.00 3.43
2226 4625 2.927477 TGCTTGTCCGATTTGATACGAC 59.073 45.455 0.00 0.00 0.00 4.34
2227 4626 2.927477 GCTTGTCCGATTTGATACGACA 59.073 45.455 0.00 0.00 0.00 4.35
2228 4627 3.555956 GCTTGTCCGATTTGATACGACAT 59.444 43.478 0.00 0.00 0.00 3.06
2229 4628 4.743151 GCTTGTCCGATTTGATACGACATA 59.257 41.667 0.00 0.00 0.00 2.29
2230 4629 5.107837 GCTTGTCCGATTTGATACGACATAG 60.108 44.000 0.00 0.00 0.00 2.23
2231 4630 4.295870 TGTCCGATTTGATACGACATAGC 58.704 43.478 0.00 0.00 0.00 2.97
2232 4631 4.202070 TGTCCGATTTGATACGACATAGCA 60.202 41.667 0.00 0.00 0.00 3.49
2233 4632 4.383052 GTCCGATTTGATACGACATAGCAG 59.617 45.833 0.00 0.00 28.97 4.24
2234 4633 4.277423 TCCGATTTGATACGACATAGCAGA 59.723 41.667 0.00 0.00 28.97 4.26
2235 4634 5.048013 TCCGATTTGATACGACATAGCAGAT 60.048 40.000 0.00 0.00 28.97 2.90
2236 4635 5.287274 CCGATTTGATACGACATAGCAGATC 59.713 44.000 0.00 0.00 37.41 2.75
2237 4636 5.858581 CGATTTGATACGACATAGCAGATCA 59.141 40.000 0.00 0.00 39.58 2.92
2238 4637 6.363357 CGATTTGATACGACATAGCAGATCAA 59.637 38.462 0.00 0.00 39.58 2.57
2239 4638 7.410193 CGATTTGATACGACATAGCAGATCAAG 60.410 40.741 0.00 0.00 39.58 3.02
2240 4639 4.550422 TGATACGACATAGCAGATCAAGC 58.450 43.478 0.00 0.00 0.00 4.01
2241 4640 4.279420 TGATACGACATAGCAGATCAAGCT 59.721 41.667 15.66 15.66 45.77 3.74
2242 4641 2.819115 ACGACATAGCAGATCAAGCTG 58.181 47.619 19.36 9.52 43.33 4.24
2243 4642 2.167281 ACGACATAGCAGATCAAGCTGT 59.833 45.455 19.36 12.05 43.33 4.40
2244 4643 2.793790 CGACATAGCAGATCAAGCTGTC 59.206 50.000 19.36 17.53 43.33 3.51
2245 4644 3.129871 GACATAGCAGATCAAGCTGTCC 58.870 50.000 19.36 6.54 43.33 4.02
2246 4645 2.502947 ACATAGCAGATCAAGCTGTCCA 59.497 45.455 19.36 3.51 43.33 4.02
2247 4646 3.054875 ACATAGCAGATCAAGCTGTCCAA 60.055 43.478 19.36 3.19 43.33 3.53
2248 4647 1.818642 AGCAGATCAAGCTGTCCAAC 58.181 50.000 11.36 0.00 41.61 3.77
2249 4648 1.350351 AGCAGATCAAGCTGTCCAACT 59.650 47.619 11.36 0.00 41.61 3.16
2250 4649 1.736681 GCAGATCAAGCTGTCCAACTC 59.263 52.381 0.00 0.00 38.17 3.01
2251 4650 2.354259 CAGATCAAGCTGTCCAACTCC 58.646 52.381 0.00 0.00 0.00 3.85
2252 4651 2.027377 CAGATCAAGCTGTCCAACTCCT 60.027 50.000 0.00 0.00 0.00 3.69
2253 4652 2.027377 AGATCAAGCTGTCCAACTCCTG 60.027 50.000 0.00 0.00 0.00 3.86
2254 4653 1.423584 TCAAGCTGTCCAACTCCTGA 58.576 50.000 0.00 0.00 0.00 3.86
2255 4654 1.980765 TCAAGCTGTCCAACTCCTGAT 59.019 47.619 0.00 0.00 0.00 2.90
2256 4655 2.027745 TCAAGCTGTCCAACTCCTGATC 60.028 50.000 0.00 0.00 0.00 2.92
2257 4656 0.908198 AGCTGTCCAACTCCTGATCC 59.092 55.000 0.00 0.00 0.00 3.36
2258 4657 0.615331 GCTGTCCAACTCCTGATCCA 59.385 55.000 0.00 0.00 0.00 3.41
2259 4658 1.003580 GCTGTCCAACTCCTGATCCAA 59.996 52.381 0.00 0.00 0.00 3.53
2260 4659 2.553028 GCTGTCCAACTCCTGATCCAAA 60.553 50.000 0.00 0.00 0.00 3.28
2261 4660 3.077359 CTGTCCAACTCCTGATCCAAAC 58.923 50.000 0.00 0.00 0.00 2.93
2262 4661 2.076863 GTCCAACTCCTGATCCAAACG 58.923 52.381 0.00 0.00 0.00 3.60
2263 4662 1.003118 TCCAACTCCTGATCCAAACGG 59.997 52.381 0.00 0.00 0.00 4.44
2264 4663 0.804989 CAACTCCTGATCCAAACGGC 59.195 55.000 0.00 0.00 0.00 5.68
2265 4664 0.400213 AACTCCTGATCCAAACGGCA 59.600 50.000 0.00 0.00 0.00 5.69
2266 4665 0.400213 ACTCCTGATCCAAACGGCAA 59.600 50.000 0.00 0.00 0.00 4.52
2267 4666 0.804989 CTCCTGATCCAAACGGCAAC 59.195 55.000 0.00 0.00 0.00 4.17
2268 4667 0.109532 TCCTGATCCAAACGGCAACA 59.890 50.000 0.00 0.00 0.00 3.33
2269 4668 0.240945 CCTGATCCAAACGGCAACAC 59.759 55.000 0.00 0.00 0.00 3.32
2270 4669 0.950836 CTGATCCAAACGGCAACACA 59.049 50.000 0.00 0.00 0.00 3.72
2271 4670 0.665835 TGATCCAAACGGCAACACAC 59.334 50.000 0.00 0.00 0.00 3.82
2272 4671 0.039527 GATCCAAACGGCAACACACC 60.040 55.000 0.00 0.00 0.00 4.16
2273 4672 0.753479 ATCCAAACGGCAACACACCA 60.753 50.000 0.00 0.00 0.00 4.17
2274 4673 0.753479 TCCAAACGGCAACACACCAT 60.753 50.000 0.00 0.00 0.00 3.55
2275 4674 0.103937 CCAAACGGCAACACACCATT 59.896 50.000 0.00 0.00 0.00 3.16
2276 4675 1.338337 CCAAACGGCAACACACCATTA 59.662 47.619 0.00 0.00 0.00 1.90
2277 4676 2.223829 CCAAACGGCAACACACCATTAA 60.224 45.455 0.00 0.00 0.00 1.40
2278 4677 3.448686 CAAACGGCAACACACCATTAAA 58.551 40.909 0.00 0.00 0.00 1.52
2279 4678 4.054671 CAAACGGCAACACACCATTAAAT 58.945 39.130 0.00 0.00 0.00 1.40
2280 4679 4.329462 AACGGCAACACACCATTAAATT 57.671 36.364 0.00 0.00 0.00 1.82
2281 4680 5.455056 AACGGCAACACACCATTAAATTA 57.545 34.783 0.00 0.00 0.00 1.40
2282 4681 5.054390 ACGGCAACACACCATTAAATTAG 57.946 39.130 0.00 0.00 0.00 1.73
2283 4682 4.082463 ACGGCAACACACCATTAAATTAGG 60.082 41.667 0.00 0.00 0.00 2.69
2284 4683 4.180817 GGCAACACACCATTAAATTAGGC 58.819 43.478 0.00 0.00 0.00 3.93
2285 4684 4.322349 GGCAACACACCATTAAATTAGGCA 60.322 41.667 0.00 0.00 0.00 4.75
2286 4685 5.418676 GCAACACACCATTAAATTAGGCAT 58.581 37.500 0.00 0.00 0.00 4.40
2287 4686 5.519927 GCAACACACCATTAAATTAGGCATC 59.480 40.000 0.00 0.00 0.00 3.91
2288 4687 5.499139 ACACACCATTAAATTAGGCATCG 57.501 39.130 0.00 0.00 0.00 3.84
2289 4688 4.947388 ACACACCATTAAATTAGGCATCGT 59.053 37.500 0.00 0.00 0.00 3.73
2290 4689 6.116806 ACACACCATTAAATTAGGCATCGTA 58.883 36.000 0.00 0.00 0.00 3.43
2291 4690 6.037830 ACACACCATTAAATTAGGCATCGTAC 59.962 38.462 0.00 0.00 0.00 3.67
2292 4691 6.037720 CACACCATTAAATTAGGCATCGTACA 59.962 38.462 0.00 0.00 0.00 2.90
2293 4692 6.260050 ACACCATTAAATTAGGCATCGTACAG 59.740 38.462 0.00 0.00 0.00 2.74
2294 4693 6.481976 CACCATTAAATTAGGCATCGTACAGA 59.518 38.462 0.00 0.00 0.00 3.41
2295 4694 6.706270 ACCATTAAATTAGGCATCGTACAGAG 59.294 38.462 0.00 0.00 0.00 3.35
2296 4695 6.706270 CCATTAAATTAGGCATCGTACAGAGT 59.294 38.462 0.00 0.00 0.00 3.24
2297 4696 7.095607 CCATTAAATTAGGCATCGTACAGAGTC 60.096 40.741 0.00 0.00 0.00 3.36
2298 4697 3.627732 ATTAGGCATCGTACAGAGTCG 57.372 47.619 0.00 0.00 0.00 4.18
2299 4698 1.306148 TAGGCATCGTACAGAGTCGG 58.694 55.000 0.00 0.00 0.00 4.79
2300 4699 0.393944 AGGCATCGTACAGAGTCGGA 60.394 55.000 0.00 0.00 0.00 4.55
2301 4700 0.669077 GGCATCGTACAGAGTCGGAT 59.331 55.000 0.00 0.00 0.00 4.18
2302 4701 1.878088 GGCATCGTACAGAGTCGGATA 59.122 52.381 0.00 0.00 0.00 2.59
2303 4702 2.095668 GGCATCGTACAGAGTCGGATAG 60.096 54.545 0.00 0.00 0.00 2.08
2304 4703 2.806818 GCATCGTACAGAGTCGGATAGA 59.193 50.000 0.00 0.00 0.00 1.98
2305 4704 3.250280 GCATCGTACAGAGTCGGATAGAA 59.750 47.826 0.00 0.00 0.00 2.10
2306 4705 4.083217 GCATCGTACAGAGTCGGATAGAAT 60.083 45.833 0.00 0.00 0.00 2.40
2307 4706 5.121925 GCATCGTACAGAGTCGGATAGAATA 59.878 44.000 0.00 0.00 0.00 1.75
2308 4707 6.348295 GCATCGTACAGAGTCGGATAGAATAA 60.348 42.308 0.00 0.00 0.00 1.40
2309 4708 7.582352 CATCGTACAGAGTCGGATAGAATAAA 58.418 38.462 0.00 0.00 0.00 1.40
2310 4709 7.558161 TCGTACAGAGTCGGATAGAATAAAA 57.442 36.000 0.00 0.00 0.00 1.52
2311 4710 8.162878 TCGTACAGAGTCGGATAGAATAAAAT 57.837 34.615 0.00 0.00 0.00 1.82
2312 4711 8.288208 TCGTACAGAGTCGGATAGAATAAAATC 58.712 37.037 0.00 0.00 0.00 2.17
2313 4712 7.268659 CGTACAGAGTCGGATAGAATAAAATCG 59.731 40.741 0.00 0.00 0.00 3.34
2314 4713 7.040473 ACAGAGTCGGATAGAATAAAATCGT 57.960 36.000 0.00 0.00 0.00 3.73
2315 4714 8.162878 ACAGAGTCGGATAGAATAAAATCGTA 57.837 34.615 0.00 0.00 0.00 3.43
2316 4715 8.074972 ACAGAGTCGGATAGAATAAAATCGTAC 58.925 37.037 0.00 0.00 0.00 3.67
2317 4716 7.268659 CAGAGTCGGATAGAATAAAATCGTACG 59.731 40.741 9.53 9.53 0.00 3.67
2318 4717 5.855395 AGTCGGATAGAATAAAATCGTACGC 59.145 40.000 11.24 0.00 0.00 4.42
2319 4718 5.626543 GTCGGATAGAATAAAATCGTACGCA 59.373 40.000 11.24 0.00 0.00 5.24
2320 4719 5.854866 TCGGATAGAATAAAATCGTACGCAG 59.145 40.000 11.24 0.00 0.00 5.18
2321 4720 5.854866 CGGATAGAATAAAATCGTACGCAGA 59.145 40.000 11.24 0.00 0.00 4.26
2322 4721 6.032565 CGGATAGAATAAAATCGTACGCAGAG 59.967 42.308 11.24 0.00 0.00 3.35
2323 4722 6.862090 GGATAGAATAAAATCGTACGCAGAGT 59.138 38.462 11.24 0.00 0.00 3.24
2324 4723 8.019669 GGATAGAATAAAATCGTACGCAGAGTA 58.980 37.037 11.24 0.00 0.00 2.59
2325 4724 8.951954 ATAGAATAAAATCGTACGCAGAGTAG 57.048 34.615 11.24 0.00 35.72 2.57
2326 4725 6.793349 AGAATAAAATCGTACGCAGAGTAGT 58.207 36.000 11.24 0.00 35.72 2.73
2327 4726 7.256286 AGAATAAAATCGTACGCAGAGTAGTT 58.744 34.615 11.24 0.00 35.72 2.24
2328 4727 7.431668 AGAATAAAATCGTACGCAGAGTAGTTC 59.568 37.037 11.24 7.96 35.72 3.01
2329 4728 3.417690 AATCGTACGCAGAGTAGTTCC 57.582 47.619 11.24 0.00 35.72 3.62
2330 4729 0.723414 TCGTACGCAGAGTAGTTCCG 59.277 55.000 11.24 0.00 35.72 4.30
2331 4730 0.445436 CGTACGCAGAGTAGTTCCGT 59.555 55.000 0.52 0.00 35.72 4.69
2332 4731 1.660607 CGTACGCAGAGTAGTTCCGTA 59.339 52.381 0.52 0.00 35.72 4.02
2333 4732 2.535732 CGTACGCAGAGTAGTTCCGTAC 60.536 54.545 0.52 10.53 46.19 3.67
2334 4733 1.818642 ACGCAGAGTAGTTCCGTACT 58.181 50.000 0.00 0.00 41.04 2.73
2335 4734 2.157738 ACGCAGAGTAGTTCCGTACTT 58.842 47.619 0.00 0.00 38.33 2.24
2336 4735 2.161211 ACGCAGAGTAGTTCCGTACTTC 59.839 50.000 0.00 0.00 38.33 3.01
2404 4803 5.048013 GGGCAGCTACTTTCAGTTAATTGTT 60.048 40.000 0.00 0.00 0.00 2.83
2405 4804 6.150474 GGGCAGCTACTTTCAGTTAATTGTTA 59.850 38.462 0.00 0.00 0.00 2.41
2469 5162 2.058829 AACAAGCCAAACCGCGTGAG 62.059 55.000 4.92 0.00 40.19 3.51
2592 5288 2.104622 TCATGGTTCTGTGCTTCTGTGA 59.895 45.455 0.00 0.00 0.00 3.58
2617 5313 5.078411 TCTCAAGTCACTAGCAATTCCTC 57.922 43.478 0.00 0.00 0.00 3.71
2618 5314 3.849911 TCAAGTCACTAGCAATTCCTCG 58.150 45.455 0.00 0.00 0.00 4.63
2627 5323 0.248784 GCAATTCCTCGAAGCATGCC 60.249 55.000 15.66 0.00 0.00 4.40
2714 5441 0.460284 AGGTGGCGTAATTCAGCTCG 60.460 55.000 5.26 0.00 37.15 5.03
2739 5466 6.633856 GGAGTTATCCCGACAAAAGTTACTA 58.366 40.000 0.00 0.00 40.03 1.82
2740 5467 6.533012 GGAGTTATCCCGACAAAAGTTACTAC 59.467 42.308 0.00 0.00 40.03 2.73
2741 5468 6.401394 AGTTATCCCGACAAAAGTTACTACC 58.599 40.000 0.00 0.00 0.00 3.18
2765 5655 6.020837 CCGCTAAAAGTAAATACGTCTCTGAC 60.021 42.308 0.00 0.00 0.00 3.51
2768 5658 4.367386 AAGTAAATACGTCTCTGACCCG 57.633 45.455 0.00 0.00 0.00 5.28
2822 5774 9.749490 CAACATCAAATTGCAAATACTCATTTC 57.251 29.630 1.71 0.00 31.82 2.17
2910 5865 9.585099 TTTATGTTCAAATTGATCAGGTATTGC 57.415 29.630 11.70 0.00 30.59 3.56
3022 5977 9.945904 AATATAAGTATAGCAAAACTCCTAGCC 57.054 33.333 0.00 0.00 0.00 3.93
3023 5978 4.323553 AGTATAGCAAAACTCCTAGCCG 57.676 45.455 0.00 0.00 0.00 5.52
3024 5979 1.954927 ATAGCAAAACTCCTAGCCGC 58.045 50.000 0.00 0.00 0.00 6.53
3025 5980 0.107848 TAGCAAAACTCCTAGCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
3026 5981 2.750888 GCAAAACTCCTAGCCGCCG 61.751 63.158 0.00 0.00 0.00 6.46
3027 5982 1.375523 CAAAACTCCTAGCCGCCGT 60.376 57.895 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.472286 CGGCAAATTCAAACGTAGTCATT 58.528 39.130 0.00 0.00 45.00 2.57
1 2 3.669557 GCGGCAAATTCAAACGTAGTCAT 60.670 43.478 0.00 0.00 45.00 3.06
2 3 2.350007 GCGGCAAATTCAAACGTAGTCA 60.350 45.455 0.00 0.00 45.00 3.41
3 4 2.239201 GCGGCAAATTCAAACGTAGTC 58.761 47.619 0.00 0.00 45.00 2.59
5 6 1.246970 CGCGGCAAATTCAAACGTAG 58.753 50.000 0.00 0.00 0.00 3.51
6 7 0.110147 CCGCGGCAAATTCAAACGTA 60.110 50.000 14.67 0.00 0.00 3.57
7 8 1.371145 CCGCGGCAAATTCAAACGT 60.371 52.632 14.67 0.00 0.00 3.99
8 9 2.715849 GCCGCGGCAAATTCAAACG 61.716 57.895 43.55 5.41 41.49 3.60
9 10 3.155424 GCCGCGGCAAATTCAAAC 58.845 55.556 43.55 11.09 41.49 2.93
52 53 4.645809 GGCAACCTAGCTCCCAAG 57.354 61.111 0.00 0.00 34.17 3.61
70 71 4.315941 GCTAGATTCGCCCCGGGG 62.316 72.222 37.09 37.09 38.57 5.73
71 72 3.101796 TTGCTAGATTCGCCCCGGG 62.102 63.158 15.80 15.80 0.00 5.73
72 73 1.887707 GTTGCTAGATTCGCCCCGG 60.888 63.158 0.00 0.00 0.00 5.73
73 74 2.237751 CGTTGCTAGATTCGCCCCG 61.238 63.158 0.00 0.00 0.00 5.73
74 75 1.887707 CCGTTGCTAGATTCGCCCC 60.888 63.158 0.00 0.00 0.00 5.80
75 76 0.743345 AACCGTTGCTAGATTCGCCC 60.743 55.000 0.00 0.00 0.00 6.13
76 77 0.651031 GAACCGTTGCTAGATTCGCC 59.349 55.000 0.00 0.00 0.00 5.54
77 78 0.297820 CGAACCGTTGCTAGATTCGC 59.702 55.000 0.00 0.00 36.16 4.70
78 79 0.297820 GCGAACCGTTGCTAGATTCG 59.702 55.000 0.00 0.00 43.77 3.34
79 80 0.651031 GGCGAACCGTTGCTAGATTC 59.349 55.000 0.00 0.00 0.00 2.52
80 81 2.763651 GGCGAACCGTTGCTAGATT 58.236 52.632 0.00 0.00 0.00 2.40
81 82 4.515404 GGCGAACCGTTGCTAGAT 57.485 55.556 0.00 0.00 0.00 1.98
99 100 2.176792 CGAAAAAGAGCGGCCTGC 59.823 61.111 11.02 11.02 46.98 4.85
100 101 2.870372 CCGAAAAAGAGCGGCCTG 59.130 61.111 0.00 0.00 41.17 4.85
106 107 3.056328 AGGGCGCCGAAAAAGAGC 61.056 61.111 22.54 2.36 0.00 4.09
107 108 1.639298 CTCAGGGCGCCGAAAAAGAG 61.639 60.000 22.54 15.96 0.00 2.85
108 109 1.671054 CTCAGGGCGCCGAAAAAGA 60.671 57.895 22.54 10.39 0.00 2.52
109 110 2.690778 CCTCAGGGCGCCGAAAAAG 61.691 63.158 22.54 12.76 0.00 2.27
110 111 2.671619 CCTCAGGGCGCCGAAAAA 60.672 61.111 22.54 2.68 0.00 1.94
111 112 4.715523 CCCTCAGGGCGCCGAAAA 62.716 66.667 22.54 4.69 35.35 2.29
121 122 3.710722 AGCCGTTCAGCCCTCAGG 61.711 66.667 0.00 0.00 0.00 3.86
122 123 2.435586 CAGCCGTTCAGCCCTCAG 60.436 66.667 0.00 0.00 0.00 3.35
123 124 4.020617 CCAGCCGTTCAGCCCTCA 62.021 66.667 0.00 0.00 0.00 3.86
124 125 3.672295 CTCCAGCCGTTCAGCCCTC 62.672 68.421 0.00 0.00 0.00 4.30
125 126 3.710722 CTCCAGCCGTTCAGCCCT 61.711 66.667 0.00 0.00 0.00 5.19
126 127 3.036429 ATCTCCAGCCGTTCAGCCC 62.036 63.158 0.00 0.00 0.00 5.19
127 128 1.817099 CATCTCCAGCCGTTCAGCC 60.817 63.158 0.00 0.00 0.00 4.85
128 129 2.467826 GCATCTCCAGCCGTTCAGC 61.468 63.158 0.00 0.00 0.00 4.26
129 130 0.809241 GAGCATCTCCAGCCGTTCAG 60.809 60.000 0.00 0.00 0.00 3.02
130 131 1.219124 GAGCATCTCCAGCCGTTCA 59.781 57.895 0.00 0.00 0.00 3.18
131 132 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
146 147 1.761784 AGGTCATGCTCCAGCTAAGAG 59.238 52.381 8.30 8.30 42.66 2.85
147 148 1.483827 CAGGTCATGCTCCAGCTAAGA 59.516 52.381 0.00 0.00 42.66 2.10
148 149 1.483827 TCAGGTCATGCTCCAGCTAAG 59.516 52.381 0.00 0.00 42.66 2.18
194 195 4.871933 AAAAACTCGCCATGATTTTCCT 57.128 36.364 0.00 0.00 29.06 3.36
222 223 3.494626 AGTGCACTAATAATGCGATTCGG 59.505 43.478 20.16 0.00 46.49 4.30
335 864 2.743752 CGCCGGACACTGCTGATTG 61.744 63.158 5.05 0.00 0.00 2.67
374 907 2.822561 GGAAGCCCTTCTTTTTCCTCTG 59.177 50.000 7.85 0.00 39.45 3.35
670 1253 3.605486 GCGGGATAAAATAGTAGTACGCG 59.395 47.826 3.53 3.53 33.93 6.01
671 1254 4.549458 TGCGGGATAAAATAGTAGTACGC 58.451 43.478 0.00 0.00 43.10 4.42
672 1255 4.620184 GCTGCGGGATAAAATAGTAGTACG 59.380 45.833 0.00 0.00 0.00 3.67
673 1256 4.620184 CGCTGCGGGATAAAATAGTAGTAC 59.380 45.833 15.40 0.00 0.00 2.73
674 1257 4.801891 CGCTGCGGGATAAAATAGTAGTA 58.198 43.478 15.40 0.00 0.00 1.82
675 1258 3.650139 CGCTGCGGGATAAAATAGTAGT 58.350 45.455 15.40 0.00 0.00 2.73
676 1259 2.412089 GCGCTGCGGGATAAAATAGTAG 59.588 50.000 24.61 0.00 0.00 2.57
677 1260 2.409975 GCGCTGCGGGATAAAATAGTA 58.590 47.619 24.61 0.00 0.00 1.82
795 1415 0.955919 AACTGCAAGCTAACTCGGCC 60.956 55.000 0.00 0.00 37.60 6.13
1314 3369 4.449743 CCCACTGTCTGAAAAATTGCAATG 59.550 41.667 13.82 0.00 0.00 2.82
1330 3385 1.392589 CAAAACACTCAGCCCACTGT 58.607 50.000 0.00 0.00 44.77 3.55
1336 3429 0.534203 TCGTCCCAAAACACTCAGCC 60.534 55.000 0.00 0.00 0.00 4.85
1342 3435 4.933400 AGTACATATGTCGTCCCAAAACAC 59.067 41.667 12.68 0.12 0.00 3.32
1343 3436 4.932799 CAGTACATATGTCGTCCCAAAACA 59.067 41.667 12.68 0.00 0.00 2.83
1345 3438 5.408880 TCAGTACATATGTCGTCCCAAAA 57.591 39.130 12.68 0.00 0.00 2.44
1688 3822 0.324943 AGAACTGGCCGTACAATGCT 59.675 50.000 0.00 0.00 0.00 3.79
2098 4497 6.114221 GCACTAACTTGCGATTTTATGGTA 57.886 37.500 0.00 0.00 31.51 3.25
2152 4551 7.490402 TGAAGTAAGCTAACTCGCCTATAAAAC 59.510 37.037 0.00 0.00 0.00 2.43
2180 4579 0.380733 CGTACGCATAGCCAGACTCA 59.619 55.000 0.52 0.00 0.00 3.41
2181 4580 0.661552 TCGTACGCATAGCCAGACTC 59.338 55.000 11.24 0.00 0.00 3.36
2182 4581 1.319541 ATCGTACGCATAGCCAGACT 58.680 50.000 11.24 0.00 0.00 3.24
2183 4582 2.052157 GAATCGTACGCATAGCCAGAC 58.948 52.381 11.24 0.00 0.00 3.51
2184 4583 1.954382 AGAATCGTACGCATAGCCAGA 59.046 47.619 11.24 0.00 0.00 3.86
2185 4584 2.423926 AGAATCGTACGCATAGCCAG 57.576 50.000 11.24 0.00 0.00 4.85
2186 4585 2.469826 CAAGAATCGTACGCATAGCCA 58.530 47.619 11.24 0.00 0.00 4.75
2187 4586 1.192534 GCAAGAATCGTACGCATAGCC 59.807 52.381 11.24 0.00 0.00 3.93
2188 4587 2.128035 AGCAAGAATCGTACGCATAGC 58.872 47.619 11.24 9.51 0.00 2.97
2189 4588 3.551890 ACAAGCAAGAATCGTACGCATAG 59.448 43.478 11.24 0.00 0.00 2.23
2190 4589 3.517602 ACAAGCAAGAATCGTACGCATA 58.482 40.909 11.24 0.00 0.00 3.14
2191 4590 2.346803 ACAAGCAAGAATCGTACGCAT 58.653 42.857 11.24 0.64 0.00 4.73
2192 4591 1.724623 GACAAGCAAGAATCGTACGCA 59.275 47.619 11.24 0.00 0.00 5.24
2193 4592 1.060698 GGACAAGCAAGAATCGTACGC 59.939 52.381 11.24 0.00 0.00 4.42
2194 4593 1.320555 CGGACAAGCAAGAATCGTACG 59.679 52.381 9.53 9.53 0.00 3.67
2195 4594 2.602878 TCGGACAAGCAAGAATCGTAC 58.397 47.619 0.00 0.00 0.00 3.67
2196 4595 3.520290 ATCGGACAAGCAAGAATCGTA 57.480 42.857 0.00 0.00 0.00 3.43
2197 4596 2.386661 ATCGGACAAGCAAGAATCGT 57.613 45.000 0.00 0.00 0.00 3.73
2198 4597 3.125146 TCAAATCGGACAAGCAAGAATCG 59.875 43.478 0.00 0.00 0.00 3.34
2199 4598 4.685169 TCAAATCGGACAAGCAAGAATC 57.315 40.909 0.00 0.00 0.00 2.52
2200 4599 5.220662 CGTATCAAATCGGACAAGCAAGAAT 60.221 40.000 0.00 0.00 0.00 2.40
2201 4600 4.092821 CGTATCAAATCGGACAAGCAAGAA 59.907 41.667 0.00 0.00 0.00 2.52
2202 4601 3.616821 CGTATCAAATCGGACAAGCAAGA 59.383 43.478 0.00 0.00 0.00 3.02
2203 4602 3.616821 TCGTATCAAATCGGACAAGCAAG 59.383 43.478 0.00 0.00 0.00 4.01
2204 4603 3.369756 GTCGTATCAAATCGGACAAGCAA 59.630 43.478 0.00 0.00 0.00 3.91
2205 4604 2.927477 GTCGTATCAAATCGGACAAGCA 59.073 45.455 0.00 0.00 0.00 3.91
2206 4605 2.927477 TGTCGTATCAAATCGGACAAGC 59.073 45.455 0.00 0.00 0.00 4.01
2207 4606 5.107837 GCTATGTCGTATCAAATCGGACAAG 60.108 44.000 0.00 0.00 0.00 3.16
2208 4607 4.743151 GCTATGTCGTATCAAATCGGACAA 59.257 41.667 0.00 0.00 0.00 3.18
2209 4608 4.202070 TGCTATGTCGTATCAAATCGGACA 60.202 41.667 0.00 0.00 0.00 4.02
2210 4609 4.295870 TGCTATGTCGTATCAAATCGGAC 58.704 43.478 0.00 0.00 0.00 4.79
2211 4610 4.277423 TCTGCTATGTCGTATCAAATCGGA 59.723 41.667 0.00 0.00 0.00 4.55
2212 4611 4.546570 TCTGCTATGTCGTATCAAATCGG 58.453 43.478 0.00 0.00 0.00 4.18
2213 4612 5.858581 TGATCTGCTATGTCGTATCAAATCG 59.141 40.000 0.00 0.00 0.00 3.34
2214 4613 7.621013 GCTTGATCTGCTATGTCGTATCAAATC 60.621 40.741 0.00 0.00 34.10 2.17
2215 4614 6.146837 GCTTGATCTGCTATGTCGTATCAAAT 59.853 38.462 0.00 0.00 34.10 2.32
2216 4615 5.463392 GCTTGATCTGCTATGTCGTATCAAA 59.537 40.000 0.00 0.00 34.10 2.69
2217 4616 4.984785 GCTTGATCTGCTATGTCGTATCAA 59.015 41.667 0.00 0.00 33.59 2.57
2218 4617 4.279420 AGCTTGATCTGCTATGTCGTATCA 59.721 41.667 11.14 0.00 39.21 2.15
2219 4618 4.620609 CAGCTTGATCTGCTATGTCGTATC 59.379 45.833 12.16 0.00 38.92 2.24
2220 4619 4.038522 ACAGCTTGATCTGCTATGTCGTAT 59.961 41.667 12.16 0.00 38.92 3.06
2221 4620 3.381590 ACAGCTTGATCTGCTATGTCGTA 59.618 43.478 12.16 0.00 38.92 3.43
2222 4621 2.167281 ACAGCTTGATCTGCTATGTCGT 59.833 45.455 12.16 4.97 38.92 4.34
2223 4622 2.793790 GACAGCTTGATCTGCTATGTCG 59.206 50.000 12.16 4.46 38.92 4.35
2224 4623 3.129871 GGACAGCTTGATCTGCTATGTC 58.870 50.000 17.09 17.09 38.92 3.06
2225 4624 2.502947 TGGACAGCTTGATCTGCTATGT 59.497 45.455 12.16 8.90 38.92 2.29
2226 4625 3.189618 TGGACAGCTTGATCTGCTATG 57.810 47.619 12.16 6.32 38.92 2.23
2227 4626 3.199508 AGTTGGACAGCTTGATCTGCTAT 59.800 43.478 12.16 3.06 38.92 2.97
2228 4627 2.568956 AGTTGGACAGCTTGATCTGCTA 59.431 45.455 12.16 0.00 38.92 3.49
2229 4628 1.350351 AGTTGGACAGCTTGATCTGCT 59.650 47.619 7.76 7.76 42.06 4.24
2230 4629 1.736681 GAGTTGGACAGCTTGATCTGC 59.263 52.381 0.00 0.00 37.59 4.26
2231 4630 2.027377 AGGAGTTGGACAGCTTGATCTG 60.027 50.000 0.00 0.00 39.86 2.90
2232 4631 2.027377 CAGGAGTTGGACAGCTTGATCT 60.027 50.000 0.00 0.00 0.00 2.75
2233 4632 2.027745 TCAGGAGTTGGACAGCTTGATC 60.028 50.000 0.00 0.00 0.00 2.92
2234 4633 1.980765 TCAGGAGTTGGACAGCTTGAT 59.019 47.619 0.00 0.00 0.00 2.57
2235 4634 1.423584 TCAGGAGTTGGACAGCTTGA 58.576 50.000 0.00 0.00 0.00 3.02
2236 4635 2.354259 GATCAGGAGTTGGACAGCTTG 58.646 52.381 0.00 0.00 0.00 4.01
2237 4636 1.280421 GGATCAGGAGTTGGACAGCTT 59.720 52.381 0.00 0.00 0.00 3.74
2238 4637 0.908198 GGATCAGGAGTTGGACAGCT 59.092 55.000 0.00 0.00 0.00 4.24
2239 4638 0.615331 TGGATCAGGAGTTGGACAGC 59.385 55.000 0.00 0.00 0.00 4.40
2240 4639 3.077359 GTTTGGATCAGGAGTTGGACAG 58.923 50.000 0.00 0.00 0.00 3.51
2241 4640 2.549992 CGTTTGGATCAGGAGTTGGACA 60.550 50.000 0.00 0.00 0.00 4.02
2242 4641 2.076863 CGTTTGGATCAGGAGTTGGAC 58.923 52.381 0.00 0.00 0.00 4.02
2243 4642 1.003118 CCGTTTGGATCAGGAGTTGGA 59.997 52.381 0.00 0.00 37.49 3.53
2244 4643 1.453155 CCGTTTGGATCAGGAGTTGG 58.547 55.000 0.00 0.00 37.49 3.77
2245 4644 0.804989 GCCGTTTGGATCAGGAGTTG 59.195 55.000 0.00 0.00 37.49 3.16
2246 4645 0.400213 TGCCGTTTGGATCAGGAGTT 59.600 50.000 0.00 0.00 37.49 3.01
2247 4646 0.400213 TTGCCGTTTGGATCAGGAGT 59.600 50.000 0.00 0.00 37.49 3.85
2248 4647 0.804989 GTTGCCGTTTGGATCAGGAG 59.195 55.000 0.00 0.00 37.49 3.69
2249 4648 0.109532 TGTTGCCGTTTGGATCAGGA 59.890 50.000 0.00 0.00 37.49 3.86
2250 4649 0.240945 GTGTTGCCGTTTGGATCAGG 59.759 55.000 0.00 0.00 37.49 3.86
2251 4650 0.950836 TGTGTTGCCGTTTGGATCAG 59.049 50.000 0.00 0.00 37.49 2.90
2252 4651 0.665835 GTGTGTTGCCGTTTGGATCA 59.334 50.000 0.00 0.00 37.49 2.92
2253 4652 0.039527 GGTGTGTTGCCGTTTGGATC 60.040 55.000 0.00 0.00 37.49 3.36
2254 4653 0.753479 TGGTGTGTTGCCGTTTGGAT 60.753 50.000 0.00 0.00 37.49 3.41
2255 4654 0.753479 ATGGTGTGTTGCCGTTTGGA 60.753 50.000 0.00 0.00 37.49 3.53
2256 4655 0.103937 AATGGTGTGTTGCCGTTTGG 59.896 50.000 0.00 0.00 31.68 3.28
2257 4656 2.783828 TAATGGTGTGTTGCCGTTTG 57.216 45.000 0.00 0.00 36.67 2.93
2258 4657 3.802948 TTTAATGGTGTGTTGCCGTTT 57.197 38.095 0.00 0.00 36.67 3.60
2259 4658 4.329462 AATTTAATGGTGTGTTGCCGTT 57.671 36.364 0.00 0.00 38.61 4.44
2260 4659 4.082463 CCTAATTTAATGGTGTGTTGCCGT 60.082 41.667 0.00 0.00 0.00 5.68
2261 4660 4.420168 CCTAATTTAATGGTGTGTTGCCG 58.580 43.478 0.00 0.00 0.00 5.69
2262 4661 4.180817 GCCTAATTTAATGGTGTGTTGCC 58.819 43.478 0.00 0.00 0.00 4.52
2263 4662 4.815269 TGCCTAATTTAATGGTGTGTTGC 58.185 39.130 0.00 0.00 0.00 4.17
2264 4663 5.743398 CGATGCCTAATTTAATGGTGTGTTG 59.257 40.000 0.00 0.00 0.00 3.33
2265 4664 5.417580 ACGATGCCTAATTTAATGGTGTGTT 59.582 36.000 0.00 0.00 0.00 3.32
2266 4665 4.947388 ACGATGCCTAATTTAATGGTGTGT 59.053 37.500 0.00 0.00 0.00 3.72
2267 4666 5.499139 ACGATGCCTAATTTAATGGTGTG 57.501 39.130 0.00 0.00 0.00 3.82
2268 4667 6.116806 TGTACGATGCCTAATTTAATGGTGT 58.883 36.000 0.00 0.00 0.00 4.16
2269 4668 6.481976 TCTGTACGATGCCTAATTTAATGGTG 59.518 38.462 0.00 0.00 0.00 4.17
2270 4669 6.588204 TCTGTACGATGCCTAATTTAATGGT 58.412 36.000 0.00 0.00 0.00 3.55
2271 4670 6.706270 ACTCTGTACGATGCCTAATTTAATGG 59.294 38.462 0.00 0.00 0.00 3.16
2272 4671 7.358435 CGACTCTGTACGATGCCTAATTTAATG 60.358 40.741 0.00 0.00 0.00 1.90
2273 4672 6.641314 CGACTCTGTACGATGCCTAATTTAAT 59.359 38.462 0.00 0.00 0.00 1.40
2274 4673 5.975344 CGACTCTGTACGATGCCTAATTTAA 59.025 40.000 0.00 0.00 0.00 1.52
2275 4674 5.506815 CCGACTCTGTACGATGCCTAATTTA 60.507 44.000 0.00 0.00 0.00 1.40
2276 4675 4.360563 CGACTCTGTACGATGCCTAATTT 58.639 43.478 0.00 0.00 0.00 1.82
2277 4676 3.243434 CCGACTCTGTACGATGCCTAATT 60.243 47.826 0.00 0.00 0.00 1.40
2278 4677 2.293677 CCGACTCTGTACGATGCCTAAT 59.706 50.000 0.00 0.00 0.00 1.73
2279 4678 1.674441 CCGACTCTGTACGATGCCTAA 59.326 52.381 0.00 0.00 0.00 2.69
2280 4679 1.134310 TCCGACTCTGTACGATGCCTA 60.134 52.381 0.00 0.00 0.00 3.93
2281 4680 0.393944 TCCGACTCTGTACGATGCCT 60.394 55.000 0.00 0.00 0.00 4.75
2282 4681 0.669077 ATCCGACTCTGTACGATGCC 59.331 55.000 0.00 0.00 0.00 4.40
2283 4682 2.806818 TCTATCCGACTCTGTACGATGC 59.193 50.000 0.00 0.00 0.00 3.91
2284 4683 5.614923 ATTCTATCCGACTCTGTACGATG 57.385 43.478 0.00 0.00 0.00 3.84
2285 4684 7.741027 TTTATTCTATCCGACTCTGTACGAT 57.259 36.000 0.00 0.00 0.00 3.73
2286 4685 7.558161 TTTTATTCTATCCGACTCTGTACGA 57.442 36.000 0.00 0.00 0.00 3.43
2287 4686 7.268659 CGATTTTATTCTATCCGACTCTGTACG 59.731 40.741 0.00 0.00 0.00 3.67
2288 4687 8.074972 ACGATTTTATTCTATCCGACTCTGTAC 58.925 37.037 0.00 0.00 0.00 2.90
2289 4688 8.162878 ACGATTTTATTCTATCCGACTCTGTA 57.837 34.615 0.00 0.00 0.00 2.74
2290 4689 7.040473 ACGATTTTATTCTATCCGACTCTGT 57.960 36.000 0.00 0.00 0.00 3.41
2291 4690 7.268659 CGTACGATTTTATTCTATCCGACTCTG 59.731 40.741 10.44 0.00 0.00 3.35
2292 4691 7.296660 CGTACGATTTTATTCTATCCGACTCT 58.703 38.462 10.44 0.00 0.00 3.24
2293 4692 6.032251 GCGTACGATTTTATTCTATCCGACTC 59.968 42.308 21.65 0.00 0.00 3.36
2294 4693 5.855395 GCGTACGATTTTATTCTATCCGACT 59.145 40.000 21.65 0.00 0.00 4.18
2295 4694 5.626543 TGCGTACGATTTTATTCTATCCGAC 59.373 40.000 21.65 0.00 0.00 4.79
2296 4695 5.761003 TGCGTACGATTTTATTCTATCCGA 58.239 37.500 21.65 0.00 0.00 4.55
2297 4696 5.854866 TCTGCGTACGATTTTATTCTATCCG 59.145 40.000 21.65 0.00 0.00 4.18
2298 4697 6.862090 ACTCTGCGTACGATTTTATTCTATCC 59.138 38.462 21.65 0.00 0.00 2.59
2299 4698 7.854934 ACTCTGCGTACGATTTTATTCTATC 57.145 36.000 21.65 0.00 0.00 2.08
2300 4699 8.566260 ACTACTCTGCGTACGATTTTATTCTAT 58.434 33.333 21.65 0.00 0.00 1.98
2301 4700 7.923888 ACTACTCTGCGTACGATTTTATTCTA 58.076 34.615 21.65 0.00 0.00 2.10
2302 4701 6.793349 ACTACTCTGCGTACGATTTTATTCT 58.207 36.000 21.65 0.00 0.00 2.40
2303 4702 7.305878 GGAACTACTCTGCGTACGATTTTATTC 60.306 40.741 21.65 11.44 0.00 1.75
2304 4703 6.474751 GGAACTACTCTGCGTACGATTTTATT 59.525 38.462 21.65 2.62 0.00 1.40
2305 4704 5.975939 GGAACTACTCTGCGTACGATTTTAT 59.024 40.000 21.65 1.38 0.00 1.40
2306 4705 5.335127 GGAACTACTCTGCGTACGATTTTA 58.665 41.667 21.65 1.78 0.00 1.52
2307 4706 4.171754 GGAACTACTCTGCGTACGATTTT 58.828 43.478 21.65 0.52 0.00 1.82
2308 4707 3.730061 CGGAACTACTCTGCGTACGATTT 60.730 47.826 21.65 0.00 0.00 2.17
2309 4708 2.223203 CGGAACTACTCTGCGTACGATT 60.223 50.000 21.65 0.00 0.00 3.34
2310 4709 1.329906 CGGAACTACTCTGCGTACGAT 59.670 52.381 21.65 0.40 0.00 3.73
2311 4710 0.723414 CGGAACTACTCTGCGTACGA 59.277 55.000 21.65 3.19 0.00 3.43
2312 4711 0.445436 ACGGAACTACTCTGCGTACG 59.555 55.000 11.84 11.84 33.14 3.67
2313 4712 2.675348 AGTACGGAACTACTCTGCGTAC 59.325 50.000 16.12 16.12 41.60 3.67
2314 4713 2.977914 AGTACGGAACTACTCTGCGTA 58.022 47.619 0.00 0.00 36.36 4.42
2315 4714 1.818642 AGTACGGAACTACTCTGCGT 58.181 50.000 0.00 0.00 36.36 5.24
2316 4715 2.161012 TGAAGTACGGAACTACTCTGCG 59.839 50.000 0.00 0.00 37.50 5.18
2317 4716 3.844577 TGAAGTACGGAACTACTCTGC 57.155 47.619 0.00 0.00 37.50 4.26
2318 4717 6.401153 GCAAAATGAAGTACGGAACTACTCTG 60.401 42.308 0.00 0.00 37.50 3.35
2319 4718 5.638234 GCAAAATGAAGTACGGAACTACTCT 59.362 40.000 0.00 0.00 37.50 3.24
2320 4719 5.407387 TGCAAAATGAAGTACGGAACTACTC 59.593 40.000 0.00 0.00 37.50 2.59
2321 4720 5.302360 TGCAAAATGAAGTACGGAACTACT 58.698 37.500 0.00 0.00 37.50 2.57
2322 4721 5.600908 TGCAAAATGAAGTACGGAACTAC 57.399 39.130 0.00 0.00 37.50 2.73
2323 4722 5.391523 GCATGCAAAATGAAGTACGGAACTA 60.392 40.000 14.21 0.00 37.50 2.24
2324 4723 4.615912 GCATGCAAAATGAAGTACGGAACT 60.616 41.667 14.21 0.00 41.49 3.01
2325 4724 3.608073 GCATGCAAAATGAAGTACGGAAC 59.392 43.478 14.21 0.00 0.00 3.62
2326 4725 3.505680 AGCATGCAAAATGAAGTACGGAA 59.494 39.130 21.98 0.00 0.00 4.30
2327 4726 3.081061 AGCATGCAAAATGAAGTACGGA 58.919 40.909 21.98 0.00 0.00 4.69
2328 4727 3.119884 TCAGCATGCAAAATGAAGTACGG 60.120 43.478 21.98 0.00 34.76 4.02
2329 4728 4.082274 TCAGCATGCAAAATGAAGTACG 57.918 40.909 21.98 0.00 34.76 3.67
2330 4729 5.221880 TGTTCAGCATGCAAAATGAAGTAC 58.778 37.500 21.98 10.22 32.64 2.73
2331 4730 5.450592 TGTTCAGCATGCAAAATGAAGTA 57.549 34.783 21.98 9.77 32.64 2.24
2332 4731 4.325028 TGTTCAGCATGCAAAATGAAGT 57.675 36.364 21.98 0.00 32.64 3.01
2333 4732 5.660629 TTTGTTCAGCATGCAAAATGAAG 57.339 34.783 21.98 0.00 32.64 3.02
2334 4733 6.621316 AATTTGTTCAGCATGCAAAATGAA 57.379 29.167 21.98 17.47 33.09 2.57
2335 4734 6.128499 GCTAATTTGTTCAGCATGCAAAATGA 60.128 34.615 21.98 12.01 33.09 2.57
2336 4735 6.019152 GCTAATTTGTTCAGCATGCAAAATG 58.981 36.000 21.98 9.53 33.09 2.32
2410 4809 6.839657 ACTGCCCTAGAAGTGTATACTGTAAT 59.160 38.462 4.17 0.00 37.19 1.89
2412 4811 5.763355 ACTGCCCTAGAAGTGTATACTGTA 58.237 41.667 4.17 0.00 37.19 2.74
2413 4812 4.611367 ACTGCCCTAGAAGTGTATACTGT 58.389 43.478 4.17 0.00 37.19 3.55
2414 4813 5.352284 CAACTGCCCTAGAAGTGTATACTG 58.648 45.833 4.17 0.00 37.19 2.74
2419 5112 1.067142 CGCAACTGCCCTAGAAGTGTA 60.067 52.381 0.00 0.00 37.91 2.90
2441 5134 2.352715 GGTTTGGCTTGTTGGCTATGAC 60.353 50.000 0.00 0.00 42.34 3.06
2469 5162 8.617290 ATCGAGGGTCAATATATTAAACCAAC 57.383 34.615 21.83 16.01 30.46 3.77
2592 5288 4.323104 GGAATTGCTAGTGACTTGAGAGGT 60.323 45.833 0.00 0.00 0.00 3.85
2617 5313 2.374830 ATCCTCCGAGGCATGCTTCG 62.375 60.000 36.80 36.80 43.65 3.79
2618 5314 0.681733 TATCCTCCGAGGCATGCTTC 59.318 55.000 19.27 19.27 34.61 3.86
2627 5323 0.962489 AATCACGCCTATCCTCCGAG 59.038 55.000 0.00 0.00 0.00 4.63
2641 5337 4.873827 TCACGGATAACTAAGGCAAATCAC 59.126 41.667 0.00 0.00 0.00 3.06
2739 5466 5.803967 CAGAGACGTATTTACTTTTAGCGGT 59.196 40.000 0.00 0.00 0.00 5.68
2740 5467 6.020837 GTCAGAGACGTATTTACTTTTAGCGG 60.021 42.308 0.00 0.00 0.00 5.52
2741 5468 6.020837 GGTCAGAGACGTATTTACTTTTAGCG 60.021 42.308 0.00 0.00 32.65 4.26
3006 5961 0.107848 GGCGGCTAGGAGTTTTGCTA 60.108 55.000 0.00 0.00 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.