Multiple sequence alignment - TraesCS1D01G371000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G371000 chr1D 100.000 5176 0 0 1 5176 449458824 449453649 0.000000e+00 9559.0
1 TraesCS1D01G371000 chr1D 78.652 534 97 13 76 595 376772433 376771903 6.420000e-89 339.0
2 TraesCS1D01G371000 chr1B 91.260 4325 254 62 1 4257 615114107 615109839 0.000000e+00 5779.0
3 TraesCS1D01G371000 chr1B 90.638 235 13 5 4927 5154 615021302 615021070 2.340000e-78 303.0
4 TraesCS1D01G371000 chr1B 87.448 239 19 4 4293 4530 615021874 615021646 1.110000e-66 265.0
5 TraesCS1D01G371000 chr1A 92.579 3948 181 43 638 4530 544588848 544584958 0.000000e+00 5565.0
6 TraesCS1D01G371000 chr1A 81.498 454 72 10 38 487 584877260 584877705 3.810000e-96 363.0
7 TraesCS1D01G371000 chr1A 90.514 253 9 9 4927 5176 544584561 544584321 2.330000e-83 320.0
8 TraesCS1D01G371000 chr6D 83.362 589 84 9 38 612 393928089 393927501 2.740000e-147 532.0
9 TraesCS1D01G371000 chr6D 80.871 528 83 12 44 556 56920606 56920082 2.900000e-107 399.0
10 TraesCS1D01G371000 chr6D 79.283 251 37 9 318 555 411924789 411925037 1.490000e-35 161.0
11 TraesCS1D01G371000 chr4D 83.303 545 81 8 38 577 39393282 39392743 1.290000e-135 494.0
12 TraesCS1D01G371000 chr4D 82.576 528 82 6 38 556 469197696 469197170 1.700000e-124 457.0
13 TraesCS1D01G371000 chr3B 79.888 537 100 8 45 577 54506905 54506373 2.260000e-103 387.0
14 TraesCS1D01G371000 chr3B 79.898 393 57 16 1033 1417 457970957 457970579 8.540000e-68 268.0
15 TraesCS1D01G371000 chr3B 77.368 380 65 16 1683 2054 457970312 457969946 6.790000e-49 206.0
16 TraesCS1D01G371000 chr4B 82.127 442 66 12 38 467 389122329 389121889 2.940000e-97 366.0
17 TraesCS1D01G371000 chr7D 80.738 488 70 13 38 514 567516095 567515621 4.930000e-95 359.0
18 TraesCS1D01G371000 chr7D 85.044 341 49 2 38 377 227296511 227296172 3.840000e-91 346.0
19 TraesCS1D01G371000 chr3D 79.233 443 84 7 38 476 167562608 167562170 8.420000e-78 302.0
20 TraesCS1D01G371000 chr3D 79.854 412 61 19 1015 1417 356827861 356827463 1.100000e-71 281.0
21 TraesCS1D01G371000 chr3D 76.823 384 67 16 1683 2054 356827196 356826823 4.090000e-46 196.0
22 TraesCS1D01G371000 chr3A 79.644 393 60 14 1033 1417 475722319 475721939 1.110000e-66 265.0
23 TraesCS1D01G371000 chr3A 77.083 384 66 16 1683 2054 475721672 475721299 8.790000e-48 202.0
24 TraesCS1D01G371000 chrUn 78.906 128 25 2 507 634 86811282 86811157 9.230000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G371000 chr1D 449453649 449458824 5175 True 9559.0 9559 100.0000 1 5176 1 chr1D.!!$R2 5175
1 TraesCS1D01G371000 chr1D 376771903 376772433 530 True 339.0 339 78.6520 76 595 1 chr1D.!!$R1 519
2 TraesCS1D01G371000 chr1B 615109839 615114107 4268 True 5779.0 5779 91.2600 1 4257 1 chr1B.!!$R1 4256
3 TraesCS1D01G371000 chr1B 615021070 615021874 804 True 284.0 303 89.0430 4293 5154 2 chr1B.!!$R2 861
4 TraesCS1D01G371000 chr1A 544584321 544588848 4527 True 2942.5 5565 91.5465 638 5176 2 chr1A.!!$R1 4538
5 TraesCS1D01G371000 chr6D 393927501 393928089 588 True 532.0 532 83.3620 38 612 1 chr6D.!!$R2 574
6 TraesCS1D01G371000 chr6D 56920082 56920606 524 True 399.0 399 80.8710 44 556 1 chr6D.!!$R1 512
7 TraesCS1D01G371000 chr4D 39392743 39393282 539 True 494.0 494 83.3030 38 577 1 chr4D.!!$R1 539
8 TraesCS1D01G371000 chr4D 469197170 469197696 526 True 457.0 457 82.5760 38 556 1 chr4D.!!$R2 518
9 TraesCS1D01G371000 chr3B 54506373 54506905 532 True 387.0 387 79.8880 45 577 1 chr3B.!!$R1 532
10 TraesCS1D01G371000 chr3B 457969946 457970957 1011 True 237.0 268 78.6330 1033 2054 2 chr3B.!!$R2 1021
11 TraesCS1D01G371000 chr3D 356826823 356827861 1038 True 238.5 281 78.3385 1015 2054 2 chr3D.!!$R2 1039
12 TraesCS1D01G371000 chr3A 475721299 475722319 1020 True 233.5 265 78.3635 1033 2054 2 chr3A.!!$R1 1021

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 634 0.031585 TTTCGTGACTGGACTGTCCG 59.968 55.000 21.15 17.33 40.17 4.79 F
755 771 0.316204 CAAAGCCAGGAACCAAGCAG 59.684 55.000 0.00 0.00 0.00 4.24 F
1605 1760 1.654137 GTGGTGCGTTTCTGCGTTG 60.654 57.895 0.00 0.00 37.81 4.10 F
2540 2776 0.470766 TGCCCGAGTGTAAACTTGGT 59.529 50.000 16.99 0.00 39.20 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1944 0.752658 TGACCTCCATCCTGTATGCG 59.247 55.000 0.00 0.0 33.92 4.73 R
2010 2210 2.580470 CGCGCCGATGATGTCAGAC 61.580 63.158 0.00 0.0 0.00 3.51 R
3118 3359 0.746659 GGTTTGTGGCATCATAGGGC 59.253 55.000 0.00 0.0 0.00 5.19 R
4485 4750 0.031857 TTGATTTGCGCCACTGGTTG 59.968 50.000 4.18 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.022416 AGCAAGCGAAACAATTCCACAATA 60.022 37.500 0.00 0.00 31.52 1.90
144 146 4.907034 CGGATCGCACCGTCTCCG 62.907 72.222 13.51 13.51 46.70 4.63
171 173 2.087009 GTGACGACACACCTAGCGC 61.087 63.158 13.14 0.00 45.32 5.92
172 174 2.506438 GACGACACACCTAGCGCC 60.506 66.667 2.29 0.00 0.00 6.53
173 175 4.415332 ACGACACACCTAGCGCCG 62.415 66.667 2.29 0.00 0.00 6.46
190 192 1.008194 CGGATCCATGCGCCATTTG 60.008 57.895 13.41 0.00 34.26 2.32
191 193 1.446516 CGGATCCATGCGCCATTTGA 61.447 55.000 13.41 0.00 34.26 2.69
193 195 0.318445 GATCCATGCGCCATTTGAGC 60.318 55.000 4.18 0.00 0.00 4.26
200 202 3.880846 GCCATTTGAGCGGAGGCG 61.881 66.667 0.00 0.00 46.35 5.52
201 203 3.204827 CCATTTGAGCGGAGGCGG 61.205 66.667 0.00 0.00 46.35 6.13
210 212 3.470888 CGGAGGCGGTGGATTCCT 61.471 66.667 3.95 0.00 0.00 3.36
211 213 2.190578 GGAGGCGGTGGATTCCTG 59.809 66.667 3.95 0.00 0.00 3.86
292 295 1.698506 GGACGTCCATCTCCTCATCT 58.301 55.000 29.75 0.00 35.64 2.90
298 301 1.370437 CATCTCCTCATCTGGGCCG 59.630 63.158 0.00 0.00 0.00 6.13
303 306 4.147449 CTCATCTGGGCCGCGTGA 62.147 66.667 4.92 1.47 0.00 4.35
306 309 4.148825 ATCTGGGCCGCGTGAGAC 62.149 66.667 4.92 0.00 0.00 3.36
321 324 1.646624 GAGACGAGGTCAGGGTCGAC 61.647 65.000 7.13 7.13 39.53 4.20
322 325 3.036783 GACGAGGTCAGGGTCGACG 62.037 68.421 9.92 0.00 39.53 5.12
323 326 2.745100 CGAGGTCAGGGTCGACGA 60.745 66.667 9.92 0.00 38.50 4.20
324 327 2.330372 CGAGGTCAGGGTCGACGAA 61.330 63.158 9.92 0.00 38.50 3.85
325 328 1.654954 CGAGGTCAGGGTCGACGAAT 61.655 60.000 9.92 0.00 38.50 3.34
329 332 0.179134 GTCAGGGTCGACGAATCTGG 60.179 60.000 21.08 9.02 0.00 3.86
335 338 0.179134 GTCGACGAATCTGGAGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
355 358 4.593864 GACTCGGATCCGCTGCCC 62.594 72.222 29.62 14.74 39.59 5.36
361 364 4.314440 GATCCGCTGCCCGCCATA 62.314 66.667 0.00 0.00 35.03 2.74
370 383 1.302033 GCCCGCCATACCAGAGATG 60.302 63.158 0.00 0.00 0.00 2.90
372 385 1.410850 CCCGCCATACCAGAGATGGT 61.411 60.000 5.12 5.12 44.96 3.55
374 387 0.319040 CGCCATACCAGAGATGGTCG 60.319 60.000 2.59 0.00 44.96 4.79
375 388 0.034059 GCCATACCAGAGATGGTCGG 59.966 60.000 2.59 7.25 44.96 4.79
383 396 2.442272 AGATGGTCGGACGGGAGG 60.442 66.667 1.43 0.00 0.00 4.30
390 403 4.388499 CGGACGGGAGGTTGGGTG 62.388 72.222 0.00 0.00 0.00 4.61
394 407 3.307906 CGGGAGGTTGGGTGACGA 61.308 66.667 0.00 0.00 0.00 4.20
415 428 0.034089 GGGGAGTGGATTGAAGTGGG 60.034 60.000 0.00 0.00 0.00 4.61
418 431 2.092914 GGGAGTGGATTGAAGTGGGTAG 60.093 54.545 0.00 0.00 0.00 3.18
420 433 2.838202 GAGTGGATTGAAGTGGGTAGGA 59.162 50.000 0.00 0.00 0.00 2.94
421 434 2.572104 AGTGGATTGAAGTGGGTAGGAC 59.428 50.000 0.00 0.00 0.00 3.85
427 440 1.906574 TGAAGTGGGTAGGACATGGTC 59.093 52.381 0.00 0.00 0.00 4.02
446 459 3.849951 GGCGAGCGGATGGGAGAA 61.850 66.667 0.00 0.00 0.00 2.87
448 461 1.227674 GCGAGCGGATGGGAGAAAT 60.228 57.895 0.00 0.00 0.00 2.17
449 462 0.033504 GCGAGCGGATGGGAGAAATA 59.966 55.000 0.00 0.00 0.00 1.40
450 463 1.338200 GCGAGCGGATGGGAGAAATAT 60.338 52.381 0.00 0.00 0.00 1.28
451 464 2.094182 GCGAGCGGATGGGAGAAATATA 60.094 50.000 0.00 0.00 0.00 0.86
452 465 3.430929 GCGAGCGGATGGGAGAAATATAT 60.431 47.826 0.00 0.00 0.00 0.86
453 466 4.115516 CGAGCGGATGGGAGAAATATATG 58.884 47.826 0.00 0.00 0.00 1.78
454 467 4.382040 CGAGCGGATGGGAGAAATATATGT 60.382 45.833 0.00 0.00 0.00 2.29
459 474 5.514834 CGGATGGGAGAAATATATGTGGGTT 60.515 44.000 0.00 0.00 0.00 4.11
462 477 4.141041 TGGGAGAAATATATGTGGGTTGGG 60.141 45.833 0.00 0.00 0.00 4.12
464 479 4.827284 GGAGAAATATATGTGGGTTGGGTG 59.173 45.833 0.00 0.00 0.00 4.61
468 483 1.221213 ATATGTGGGTTGGGTGGGCT 61.221 55.000 0.00 0.00 0.00 5.19
502 517 4.760047 GATGTGGTGGACGCGCCT 62.760 66.667 18.14 0.00 37.63 5.52
518 533 2.047844 CTGAGCGCCCCATATCCG 60.048 66.667 2.29 0.00 0.00 4.18
542 557 3.616219 CCATATTTGGGTTGGAGACGAA 58.384 45.455 0.00 0.00 39.56 3.85
556 571 4.760047 CGAAGGGTGCCGGTCAGG 62.760 72.222 1.90 0.00 44.97 3.86
566 581 1.746615 CCGGTCAGGCCAGATGTTG 60.747 63.158 5.01 0.00 36.97 3.33
577 592 0.251916 CAGATGTTGGAGGCCCGTTA 59.748 55.000 0.00 0.00 34.29 3.18
581 596 0.475044 TGTTGGAGGCCCGTTAAAGT 59.525 50.000 0.00 0.00 34.29 2.66
585 600 0.738762 GGAGGCCCGTTAAAGTCGTC 60.739 60.000 0.00 0.00 0.00 4.20
589 604 0.788391 GCCCGTTAAAGTCGTCAGTG 59.212 55.000 0.00 0.00 0.00 3.66
593 608 1.790623 CGTTAAAGTCGTCAGTGTGGG 59.209 52.381 0.00 0.00 0.00 4.61
595 610 3.200483 GTTAAAGTCGTCAGTGTGGGTT 58.800 45.455 0.00 0.00 0.00 4.11
596 611 1.663695 AAAGTCGTCAGTGTGGGTTG 58.336 50.000 0.00 0.00 0.00 3.77
604 619 1.336440 TCAGTGTGGGTTGCATTTTCG 59.664 47.619 0.00 0.00 0.00 3.46
608 623 1.066303 TGTGGGTTGCATTTTCGTGAC 59.934 47.619 0.00 0.00 0.00 3.67
612 627 1.606668 GGTTGCATTTTCGTGACTGGA 59.393 47.619 0.00 0.00 0.00 3.86
614 629 2.254546 TGCATTTTCGTGACTGGACT 57.745 45.000 0.00 0.00 0.00 3.85
616 631 1.873591 GCATTTTCGTGACTGGACTGT 59.126 47.619 0.00 0.00 0.00 3.55
617 632 2.096218 GCATTTTCGTGACTGGACTGTC 60.096 50.000 0.00 0.00 37.47 3.51
618 633 2.234300 TTTTCGTGACTGGACTGTCC 57.766 50.000 19.96 19.96 36.21 4.02
619 634 0.031585 TTTCGTGACTGGACTGTCCG 59.968 55.000 21.15 17.33 40.17 4.79
621 636 2.920645 CGTGACTGGACTGTCCGCT 61.921 63.158 21.15 8.95 40.17 5.52
622 637 1.367840 GTGACTGGACTGTCCGCTT 59.632 57.895 21.15 8.25 40.17 4.68
623 638 0.946221 GTGACTGGACTGTCCGCTTG 60.946 60.000 21.15 13.32 40.17 4.01
624 639 1.374758 GACTGGACTGTCCGCTTGG 60.375 63.158 21.15 11.08 40.17 3.61
625 640 2.046892 CTGGACTGTCCGCTTGGG 60.047 66.667 21.15 4.28 40.17 4.12
626 641 4.329545 TGGACTGTCCGCTTGGGC 62.330 66.667 21.15 0.00 40.17 5.36
636 651 3.981308 GCTTGGGCGTTTGAGCTA 58.019 55.556 0.00 0.00 37.29 3.32
659 674 3.748863 CGTCTGGCTGTAGATGCTT 57.251 52.632 0.00 0.00 0.00 3.91
663 678 4.122776 CGTCTGGCTGTAGATGCTTTTAT 58.877 43.478 0.00 0.00 0.00 1.40
673 688 7.875041 GCTGTAGATGCTTTTATCTTGATCCTA 59.125 37.037 0.00 0.00 38.35 2.94
674 689 9.770097 CTGTAGATGCTTTTATCTTGATCCTAA 57.230 33.333 0.00 0.00 38.35 2.69
755 771 0.316204 CAAAGCCAGGAACCAAGCAG 59.684 55.000 0.00 0.00 0.00 4.24
859 878 3.299190 CGGCTCCGATCTCCCCTC 61.299 72.222 1.35 0.00 42.83 4.30
1184 1333 4.803426 CAGTGCGCCCGTCCTCTC 62.803 72.222 4.18 0.00 0.00 3.20
1191 1340 4.862823 CCCGTCCTCTCCTCCCCC 62.863 77.778 0.00 0.00 0.00 5.40
1260 1410 2.521958 CTTCCGCTTCCCGTGGTCAT 62.522 60.000 0.00 0.00 43.94 3.06
1419 1569 3.017314 CGCCTCGTCGATGTACGC 61.017 66.667 4.21 4.13 42.56 4.42
1431 1581 3.795342 GTACGCACGCCGCCATTT 61.795 61.111 0.00 0.00 41.76 2.32
1605 1760 1.654137 GTGGTGCGTTTCTGCGTTG 60.654 57.895 0.00 0.00 37.81 4.10
1678 1833 2.396590 TATGGACGCCCTTTGTTCTC 57.603 50.000 0.00 0.00 0.00 2.87
1767 1944 4.806330 TGAGTGAGTTCATTAAGACCGAC 58.194 43.478 0.00 0.00 0.00 4.79
1971 2171 2.479566 TCTTGGATGTGGTTGAGAGC 57.520 50.000 0.00 0.00 0.00 4.09
2010 2210 1.442526 GCAATGGGCAGATCGTGAGG 61.443 60.000 0.00 0.00 43.97 3.86
2088 2288 3.320826 TCATCCCATACAGTCATACCACG 59.679 47.826 0.00 0.00 0.00 4.94
2089 2289 2.742348 TCCCATACAGTCATACCACGT 58.258 47.619 0.00 0.00 0.00 4.49
2109 2309 7.982919 ACCACGTATTCACACTATGCTTATAAA 59.017 33.333 0.00 0.00 0.00 1.40
2204 2427 9.444600 TGTATCCTTTTAAATTAGGAGTGTGTC 57.555 33.333 12.92 3.07 43.46 3.67
2206 2429 5.410439 TCCTTTTAAATTAGGAGTGTGTCGC 59.590 40.000 4.76 0.00 35.66 5.19
2207 2430 5.411669 CCTTTTAAATTAGGAGTGTGTCGCT 59.588 40.000 0.20 0.00 33.13 4.93
2230 2453 6.201226 TGCAGTTGAAACAAATTGACAGTA 57.799 33.333 0.00 0.00 0.00 2.74
2232 2455 7.264221 TGCAGTTGAAACAAATTGACAGTAAT 58.736 30.769 0.00 0.00 0.00 1.89
2233 2456 8.409371 TGCAGTTGAAACAAATTGACAGTAATA 58.591 29.630 0.00 0.00 0.00 0.98
2266 2499 8.251383 ACTATACATACTCTGCCAACTACAAT 57.749 34.615 0.00 0.00 0.00 2.71
2272 2505 8.651389 ACATACTCTGCCAACTACAATATATGT 58.349 33.333 0.00 0.00 46.36 2.29
2302 2535 3.206150 AGTGTGCCTTGAACAAGTACAG 58.794 45.455 16.28 4.15 35.64 2.74
2305 2538 3.625764 TGTGCCTTGAACAAGTACAGTTC 59.374 43.478 18.80 18.80 44.26 3.01
2345 2578 6.713903 CAGATAATATCATCAAGTTGTGCCCT 59.286 38.462 2.11 0.00 0.00 5.19
2346 2579 6.713903 AGATAATATCATCAAGTTGTGCCCTG 59.286 38.462 2.11 0.00 0.00 4.45
2426 2659 5.527582 GCTGGTTTCAACTTCTAGTCTTTCA 59.472 40.000 0.00 0.00 0.00 2.69
2434 2667 7.788026 TCAACTTCTAGTCTTTCAGGTTAACA 58.212 34.615 8.10 0.00 0.00 2.41
2436 2669 7.362802 ACTTCTAGTCTTTCAGGTTAACAGT 57.637 36.000 8.10 0.00 0.00 3.55
2465 2699 9.503399 AAATATTATCCGACTATGTTTTCCCTC 57.497 33.333 0.00 0.00 0.00 4.30
2494 2730 5.784906 TCCTGTGGTATATTCATCATGGCTA 59.215 40.000 0.00 0.00 0.00 3.93
2504 2740 4.976224 TCATCATGGCTAATATGCATGC 57.024 40.909 11.82 11.82 34.04 4.06
2540 2776 0.470766 TGCCCGAGTGTAAACTTGGT 59.529 50.000 16.99 0.00 39.20 3.67
3062 3303 5.948758 TGGCATGAATGACCAACTTACATAA 59.051 36.000 0.00 0.00 33.92 1.90
3118 3359 8.567948 ACAAATGTAGAAATTGAAGTACCTGTG 58.432 33.333 0.00 0.00 0.00 3.66
3175 3416 2.633657 GGTTCTGCGGCATATGCG 59.366 61.111 21.04 16.58 43.26 4.73
3205 3446 2.749621 AGACGCAATGGTCTGGAAAATC 59.250 45.455 4.07 0.00 45.24 2.17
3269 3510 7.744733 TCCATATGAACACTTATGCTTCCATA 58.255 34.615 3.65 0.00 32.85 2.74
3280 3521 8.043113 CACTTATGCTTCCATATTATGCTAGGA 58.957 37.037 0.00 0.00 34.10 2.94
3309 3550 4.103153 TGCTCTAATTCCCTGGACCTATTG 59.897 45.833 0.00 0.00 0.00 1.90
3387 3628 3.642141 AGAAGCAACCCCTGAAAAGAAA 58.358 40.909 0.00 0.00 0.00 2.52
3454 3695 2.435805 GGCATTCAGGTACTCCATCAGA 59.564 50.000 0.00 0.00 34.60 3.27
3459 3700 6.239430 GCATTCAGGTACTCCATCAGATCTTA 60.239 42.308 0.00 0.00 34.60 2.10
3460 3701 6.716934 TTCAGGTACTCCATCAGATCTTAC 57.283 41.667 0.00 0.00 34.60 2.34
3467 3708 7.502895 GGTACTCCATCAGATCTTACTGTAGAA 59.497 40.741 0.00 0.00 38.79 2.10
3496 3738 3.058639 CCAGTTAGCTGCTTCACAACTTC 60.059 47.826 7.79 0.00 41.26 3.01
3501 3743 2.158696 AGCTGCTTCACAACTTCCTCTT 60.159 45.455 0.00 0.00 0.00 2.85
3659 3904 3.295585 TCTGATCTCTGCTCTAGCTGT 57.704 47.619 0.00 0.00 42.66 4.40
3664 3909 2.529632 TCTCTGCTCTAGCTGTTGGAA 58.470 47.619 0.00 0.00 42.66 3.53
3692 3938 4.241681 GAGCAGTTTGTTAGAGTCTGAGG 58.758 47.826 1.86 0.00 0.00 3.86
3693 3939 3.898123 AGCAGTTTGTTAGAGTCTGAGGA 59.102 43.478 1.86 0.00 0.00 3.71
3694 3940 4.021544 AGCAGTTTGTTAGAGTCTGAGGAG 60.022 45.833 1.86 0.00 0.00 3.69
3695 3941 4.815269 CAGTTTGTTAGAGTCTGAGGAGG 58.185 47.826 1.86 0.00 0.00 4.30
3696 3942 3.259625 AGTTTGTTAGAGTCTGAGGAGGC 59.740 47.826 1.86 0.00 0.00 4.70
3734 3980 1.826385 AGTGCTGCACCTGAATTACC 58.174 50.000 27.74 0.11 34.49 2.85
3799 4045 1.340114 CCTAAAGCTCCACCCTTCCAC 60.340 57.143 0.00 0.00 0.00 4.02
3847 4093 7.768807 TTTACCCATGTTTGCTGTAAGTTAT 57.231 32.000 0.00 0.00 35.30 1.89
3856 4103 6.883756 TGTTTGCTGTAAGTTATCATCCATCA 59.116 34.615 0.00 0.00 35.30 3.07
3985 4232 7.973944 GGCCCTGTTTCTAATGTTACTATTTTG 59.026 37.037 0.00 0.00 0.00 2.44
4032 4282 3.825014 TGTATTACCCTCTGATACCTCGC 59.175 47.826 0.00 0.00 0.00 5.03
4090 4343 2.171237 TGTATTCCCTGTGGAGCATCTG 59.829 50.000 0.00 0.00 43.07 2.90
4131 4390 7.619965 TCTTACCAGTGTGAATGTATGATGAA 58.380 34.615 0.00 0.00 0.00 2.57
4158 4417 1.625315 TGCAGACACCAGCAAGTCTAT 59.375 47.619 0.00 0.00 42.87 1.98
4162 4421 4.878397 GCAGACACCAGCAAGTCTATAAAT 59.122 41.667 0.00 0.00 42.87 1.40
4257 4516 2.028112 TCGCATGGAGTTTCTTAGTGCT 60.028 45.455 0.00 0.00 0.00 4.40
4273 4532 3.642755 CTGTTGGTGACGGCTGTC 58.357 61.111 19.20 19.20 45.71 3.51
4286 4545 1.281960 GCTGTCATCATGATGCCGC 59.718 57.895 27.68 23.80 38.65 6.53
4288 4547 2.250485 GTCATCATGATGCCGCGC 59.750 61.111 27.68 12.73 38.65 6.86
4337 4596 7.230712 CCTTATGGGAGGAATGTATTGGTTAAC 59.769 40.741 0.00 0.00 39.25 2.01
4338 4597 5.522315 TGGGAGGAATGTATTGGTTAACA 57.478 39.130 8.10 0.00 0.00 2.41
4371 4630 5.334414 GCTCATCATTCGTGAAGAACAGTTT 60.334 40.000 0.00 0.00 42.39 2.66
4402 4667 1.617850 TGGGTAGCTGCACCAAATTTG 59.382 47.619 11.40 11.40 40.65 2.32
4426 4691 5.105997 GGTGATTTGATCTCCCAAACTGAAG 60.106 44.000 0.00 0.00 38.65 3.02
4431 4696 2.957402 TCTCCCAAACTGAAGCACAT 57.043 45.000 0.00 0.00 0.00 3.21
4449 4714 5.091910 CACATCATAAGTGCATAGCTGTG 57.908 43.478 6.03 6.03 0.00 3.66
4450 4715 4.812626 CACATCATAAGTGCATAGCTGTGA 59.187 41.667 15.47 0.00 0.00 3.58
4451 4716 5.050295 CACATCATAAGTGCATAGCTGTGAG 60.050 44.000 15.47 0.00 0.00 3.51
4452 4717 4.063998 TCATAAGTGCATAGCTGTGAGG 57.936 45.455 15.47 0.00 0.00 3.86
4453 4718 2.315925 TAAGTGCATAGCTGTGAGGC 57.684 50.000 15.47 0.00 0.00 4.70
4454 4719 0.742281 AAGTGCATAGCTGTGAGGCG 60.742 55.000 15.47 0.00 37.29 5.52
4455 4720 2.512286 TGCATAGCTGTGAGGCGC 60.512 61.111 15.47 0.00 37.29 6.53
4508 4776 1.994779 CCAGTGGCGCAAATCAAAATC 59.005 47.619 10.83 0.00 0.00 2.17
4512 4780 1.135431 TGGCGCAAATCAAAATCGAGG 60.135 47.619 10.83 0.00 0.00 4.63
4516 4784 1.798813 GCAAATCAAAATCGAGGGCGG 60.799 52.381 0.00 0.00 38.28 6.13
4521 4789 0.535102 CAAAATCGAGGGCGGCCTAT 60.535 55.000 32.93 19.49 38.28 2.57
4527 4795 1.004440 GAGGGCGGCCTATCATCAC 60.004 63.158 32.93 13.07 0.00 3.06
4530 4798 1.376466 GGCGGCCTATCATCACCAT 59.624 57.895 12.87 0.00 0.00 3.55
4531 4799 0.674895 GGCGGCCTATCATCACCATC 60.675 60.000 12.87 0.00 0.00 3.51
4533 4801 0.979665 CGGCCTATCATCACCATCCT 59.020 55.000 0.00 0.00 0.00 3.24
4536 4804 3.177228 GGCCTATCATCACCATCCTACT 58.823 50.000 0.00 0.00 0.00 2.57
4537 4805 3.055530 GGCCTATCATCACCATCCTACTG 60.056 52.174 0.00 0.00 0.00 2.74
4540 4808 5.221722 GCCTATCATCACCATCCTACTGAAA 60.222 44.000 0.00 0.00 0.00 2.69
4541 4809 6.226787 CCTATCATCACCATCCTACTGAAAC 58.773 44.000 0.00 0.00 0.00 2.78
4542 4810 5.965033 ATCATCACCATCCTACTGAAACT 57.035 39.130 0.00 0.00 0.00 2.66
4543 4811 5.344743 TCATCACCATCCTACTGAAACTC 57.655 43.478 0.00 0.00 0.00 3.01
4544 4812 3.868757 TCACCATCCTACTGAAACTCG 57.131 47.619 0.00 0.00 0.00 4.18
4545 4813 3.427573 TCACCATCCTACTGAAACTCGA 58.572 45.455 0.00 0.00 0.00 4.04
4546 4814 4.023980 TCACCATCCTACTGAAACTCGAT 58.976 43.478 0.00 0.00 0.00 3.59
4547 4815 4.115516 CACCATCCTACTGAAACTCGATG 58.884 47.826 0.00 0.00 0.00 3.84
4548 4816 4.023980 ACCATCCTACTGAAACTCGATGA 58.976 43.478 0.00 0.00 30.91 2.92
4549 4817 4.466370 ACCATCCTACTGAAACTCGATGAA 59.534 41.667 0.00 0.00 30.91 2.57
4550 4818 5.046591 ACCATCCTACTGAAACTCGATGAAA 60.047 40.000 0.00 0.00 30.91 2.69
4551 4819 6.051717 CCATCCTACTGAAACTCGATGAAAT 58.948 40.000 0.00 0.00 30.91 2.17
4552 4820 6.018425 CCATCCTACTGAAACTCGATGAAATG 60.018 42.308 0.00 0.00 30.91 2.32
4553 4821 6.280855 TCCTACTGAAACTCGATGAAATGA 57.719 37.500 0.00 0.00 0.00 2.57
4554 4822 6.333416 TCCTACTGAAACTCGATGAAATGAG 58.667 40.000 0.00 0.00 38.21 2.90
4555 4823 6.152831 TCCTACTGAAACTCGATGAAATGAGA 59.847 38.462 0.00 0.00 36.11 3.27
4556 4824 6.475076 CCTACTGAAACTCGATGAAATGAGAG 59.525 42.308 0.00 0.00 36.11 3.20
4557 4825 5.788450 ACTGAAACTCGATGAAATGAGAGT 58.212 37.500 0.00 0.00 41.00 3.24
4558 4826 5.636965 ACTGAAACTCGATGAAATGAGAGTG 59.363 40.000 0.00 0.00 39.17 3.51
4559 4827 5.783111 TGAAACTCGATGAAATGAGAGTGA 58.217 37.500 0.00 0.00 39.17 3.41
4562 4830 6.473397 AACTCGATGAAATGAGAGTGAAAC 57.527 37.500 0.00 0.00 39.17 2.78
4563 4831 5.541845 ACTCGATGAAATGAGAGTGAAACA 58.458 37.500 0.00 0.00 38.81 2.83
4565 4833 6.073548 ACTCGATGAAATGAGAGTGAAACAAC 60.074 38.462 0.00 0.00 38.81 3.32
4566 4834 5.991606 TCGATGAAATGAGAGTGAAACAACT 59.008 36.000 0.00 0.00 41.43 3.16
4567 4835 6.146184 TCGATGAAATGAGAGTGAAACAACTC 59.854 38.462 0.00 0.00 45.82 3.01
4576 4844 4.826556 GAGTGAAACAACTCATAGAGGCT 58.173 43.478 0.00 0.00 44.98 4.58
4578 4846 5.971763 AGTGAAACAACTCATAGAGGCTAG 58.028 41.667 0.00 0.00 41.43 3.42
4579 4847 5.482175 AGTGAAACAACTCATAGAGGCTAGT 59.518 40.000 0.00 0.00 41.43 2.57
4584 4852 5.344743 CAACTCATAGAGGCTAGTTGGAA 57.655 43.478 16.00 0.00 43.17 3.53
4586 4854 6.173339 CAACTCATAGAGGCTAGTTGGAAAA 58.827 40.000 16.00 0.00 43.17 2.29
4587 4855 6.374417 ACTCATAGAGGCTAGTTGGAAAAA 57.626 37.500 0.00 0.00 33.35 1.94
4589 4857 6.825721 ACTCATAGAGGCTAGTTGGAAAAATG 59.174 38.462 0.00 0.00 33.35 2.32
4590 4858 6.721318 TCATAGAGGCTAGTTGGAAAAATGT 58.279 36.000 0.00 0.00 0.00 2.71
4591 4859 7.175104 TCATAGAGGCTAGTTGGAAAAATGTT 58.825 34.615 0.00 0.00 0.00 2.71
4592 4860 8.325787 TCATAGAGGCTAGTTGGAAAAATGTTA 58.674 33.333 0.00 0.00 0.00 2.41
4594 4862 7.833285 AGAGGCTAGTTGGAAAAATGTTAAA 57.167 32.000 0.00 0.00 0.00 1.52
4596 4864 8.870116 AGAGGCTAGTTGGAAAAATGTTAAATT 58.130 29.630 0.00 0.00 0.00 1.82
4597 4865 9.489084 GAGGCTAGTTGGAAAAATGTTAAATTT 57.511 29.630 0.00 0.00 0.00 1.82
4598 4866 9.271828 AGGCTAGTTGGAAAAATGTTAAATTTG 57.728 29.630 0.00 0.00 0.00 2.32
4599 4867 9.051679 GGCTAGTTGGAAAAATGTTAAATTTGT 57.948 29.630 0.00 0.00 0.00 2.83
4603 4871 9.237187 AGTTGGAAAAATGTTAAATTTGTTGGT 57.763 25.926 0.00 0.00 0.00 3.67
4613 4881 8.804688 TGTTAAATTTGTTGGTAGAATTTCGG 57.195 30.769 0.00 0.00 35.36 4.30
4614 4882 7.382759 TGTTAAATTTGTTGGTAGAATTTCGGC 59.617 33.333 0.00 0.00 35.36 5.54
4615 4883 3.546002 TTTGTTGGTAGAATTTCGGCG 57.454 42.857 0.00 0.00 0.00 6.46
4616 4884 2.172851 TGTTGGTAGAATTTCGGCGT 57.827 45.000 6.85 0.00 0.00 5.68
4617 4885 3.316071 TGTTGGTAGAATTTCGGCGTA 57.684 42.857 6.85 0.00 0.00 4.42
4618 4886 3.864243 TGTTGGTAGAATTTCGGCGTAT 58.136 40.909 6.85 0.00 0.00 3.06
4619 4887 4.255301 TGTTGGTAGAATTTCGGCGTATT 58.745 39.130 6.85 8.26 0.00 1.89
4620 4888 5.417811 TGTTGGTAGAATTTCGGCGTATTA 58.582 37.500 6.85 0.00 0.00 0.98
4621 4889 5.873712 TGTTGGTAGAATTTCGGCGTATTAA 59.126 36.000 6.85 0.00 0.00 1.40
4622 4890 6.370994 TGTTGGTAGAATTTCGGCGTATTAAA 59.629 34.615 6.85 0.00 0.00 1.52
4623 4891 7.066043 TGTTGGTAGAATTTCGGCGTATTAAAT 59.934 33.333 6.85 2.29 0.00 1.40
4624 4892 7.556733 TGGTAGAATTTCGGCGTATTAAATT 57.443 32.000 14.39 14.39 35.95 1.82
4625 4893 7.987649 TGGTAGAATTTCGGCGTATTAAATTT 58.012 30.769 15.27 0.00 33.99 1.82
4626 4894 7.911205 TGGTAGAATTTCGGCGTATTAAATTTG 59.089 33.333 15.27 0.00 33.99 2.32
4627 4895 7.911727 GGTAGAATTTCGGCGTATTAAATTTGT 59.088 33.333 15.27 10.18 33.99 2.83
4628 4896 9.281075 GTAGAATTTCGGCGTATTAAATTTGTT 57.719 29.630 15.27 9.06 33.99 2.83
4629 4897 8.389586 AGAATTTCGGCGTATTAAATTTGTTC 57.610 30.769 15.27 6.61 33.99 3.18
4630 4898 8.024285 AGAATTTCGGCGTATTAAATTTGTTCA 58.976 29.630 15.27 0.00 33.99 3.18
4631 4899 8.522178 AATTTCGGCGTATTAAATTTGTTCAA 57.478 26.923 6.85 0.00 30.62 2.69
4632 4900 7.925703 TTTCGGCGTATTAAATTTGTTCAAA 57.074 28.000 6.85 0.44 0.00 2.69
4633 4901 6.914760 TCGGCGTATTAAATTTGTTCAAAC 57.085 33.333 6.85 0.00 0.00 2.93
4662 4930 2.880890 CTTGGTCTGGGTGAAGACAAAG 59.119 50.000 7.00 7.00 46.61 2.77
4669 4942 4.530553 TCTGGGTGAAGACAAAGTAGCATA 59.469 41.667 0.00 0.00 0.00 3.14
4672 4945 6.953101 TGGGTGAAGACAAAGTAGCATATAA 58.047 36.000 0.00 0.00 0.00 0.98
4698 4972 9.515226 AGTTGTTATTTATAGGAGAACTTGCAA 57.485 29.630 0.00 0.00 0.00 4.08
4720 4994 3.747099 GCAAGAGCATGTAAATCGTGT 57.253 42.857 0.00 0.00 41.58 4.49
4736 5010 2.304470 TCGTGTGATCTTTCCCATTCCA 59.696 45.455 0.00 0.00 0.00 3.53
4737 5011 2.420022 CGTGTGATCTTTCCCATTCCAC 59.580 50.000 0.00 0.00 0.00 4.02
4742 5016 3.181424 TGATCTTTCCCATTCCACCAACA 60.181 43.478 0.00 0.00 0.00 3.33
4758 5035 4.984161 CACCAACAAATGTGGAATGTTCTC 59.016 41.667 0.00 0.00 35.22 2.87
4766 5043 7.173907 ACAAATGTGGAATGTTCTCTCAGTAAG 59.826 37.037 0.00 0.00 0.00 2.34
4768 5045 4.284490 TGTGGAATGTTCTCTCAGTAAGCT 59.716 41.667 0.00 0.00 0.00 3.74
4773 5050 6.257630 GGAATGTTCTCTCAGTAAGCTCAATC 59.742 42.308 0.00 0.00 0.00 2.67
4776 5054 6.705302 TGTTCTCTCAGTAAGCTCAATCAAT 58.295 36.000 0.00 0.00 0.00 2.57
4778 5056 8.314021 TGTTCTCTCAGTAAGCTCAATCAATTA 58.686 33.333 0.00 0.00 0.00 1.40
4781 5059 8.699130 TCTCTCAGTAAGCTCAATCAATTATGA 58.301 33.333 0.00 0.00 40.57 2.15
4783 5061 9.842775 TCTCAGTAAGCTCAATCAATTATGAAT 57.157 29.630 0.00 0.00 39.49 2.57
4786 5064 9.459640 CAGTAAGCTCAATCAATTATGAATTGG 57.540 33.333 11.06 0.00 46.40 3.16
4787 5065 8.636213 AGTAAGCTCAATCAATTATGAATTGGG 58.364 33.333 11.06 0.00 46.40 4.12
4790 5068 7.667557 AGCTCAATCAATTATGAATTGGGATG 58.332 34.615 11.06 8.36 46.40 3.51
4791 5069 6.367969 GCTCAATCAATTATGAATTGGGATGC 59.632 38.462 11.06 6.94 46.40 3.91
4792 5070 7.606135 TCAATCAATTATGAATTGGGATGCT 57.394 32.000 11.06 0.00 46.40 3.79
4793 5071 8.709272 TCAATCAATTATGAATTGGGATGCTA 57.291 30.769 11.06 0.00 46.40 3.49
4794 5072 9.316594 TCAATCAATTATGAATTGGGATGCTAT 57.683 29.630 11.06 0.00 46.40 2.97
4799 5079 9.991906 CAATTATGAATTGGGATGCTATTTTCT 57.008 29.630 4.35 0.00 43.50 2.52
4803 5083 5.536161 TGAATTGGGATGCTATTTTCTAGCC 59.464 40.000 2.07 0.00 39.69 3.93
4805 5085 2.703536 TGGGATGCTATTTTCTAGCCGA 59.296 45.455 2.07 0.00 39.69 5.54
4809 5150 6.116126 GGGATGCTATTTTCTAGCCGAATAT 58.884 40.000 2.07 0.00 39.69 1.28
4829 5170 9.599322 CGAATATTGTGGCATTTTATAGAAGAC 57.401 33.333 0.00 0.00 0.00 3.01
4837 5178 7.702348 GTGGCATTTTATAGAAGACCATCAAAC 59.298 37.037 0.00 0.00 0.00 2.93
4838 5179 7.395772 TGGCATTTTATAGAAGACCATCAAACA 59.604 33.333 0.00 0.00 0.00 2.83
4840 5181 8.677300 GCATTTTATAGAAGACCATCAAACAGA 58.323 33.333 0.00 0.00 0.00 3.41
4851 5192 6.721208 AGACCATCAAACAGAAAATACCACAT 59.279 34.615 0.00 0.00 0.00 3.21
4874 5216 7.882791 ACATAAAGAAAGATGTCATGTACCACA 59.117 33.333 0.00 0.00 30.32 4.17
4875 5217 8.896744 CATAAAGAAAGATGTCATGTACCACAT 58.103 33.333 0.00 0.00 39.91 3.21
4877 5219 8.862325 AAAGAAAGATGTCATGTACCACATAA 57.138 30.769 0.00 0.00 36.53 1.90
4878 5220 9.466497 AAAGAAAGATGTCATGTACCACATAAT 57.534 29.630 0.00 0.00 36.53 1.28
4879 5221 9.466497 AAGAAAGATGTCATGTACCACATAATT 57.534 29.630 0.00 0.00 36.53 1.40
4883 5225 8.853077 AGATGTCATGTACCACATAATTATGG 57.147 34.615 25.45 15.28 36.53 2.74
4884 5226 8.659527 AGATGTCATGTACCACATAATTATGGA 58.340 33.333 25.45 10.51 36.53 3.41
4885 5227 8.853077 ATGTCATGTACCACATAATTATGGAG 57.147 34.615 25.45 18.78 36.53 3.86
4886 5228 7.801104 TGTCATGTACCACATAATTATGGAGT 58.199 34.615 25.45 22.45 36.53 3.85
4887 5229 8.929487 TGTCATGTACCACATAATTATGGAGTA 58.071 33.333 25.45 21.62 36.53 2.59
4888 5230 9.204570 GTCATGTACCACATAATTATGGAGTAC 57.795 37.037 30.35 30.35 41.55 2.73
4889 5231 9.154632 TCATGTACCACATAATTATGGAGTACT 57.845 33.333 32.97 24.56 41.63 2.73
4890 5232 9.778741 CATGTACCACATAATTATGGAGTACTT 57.221 33.333 32.97 28.82 41.63 2.24
4891 5233 9.778741 ATGTACCACATAATTATGGAGTACTTG 57.221 33.333 32.97 21.48 41.63 3.16
4892 5234 8.208224 TGTACCACATAATTATGGAGTACTTGG 58.792 37.037 32.97 27.26 41.63 3.61
4893 5235 7.446106 ACCACATAATTATGGAGTACTTGGA 57.554 36.000 25.45 0.00 39.46 3.53
4894 5236 8.045720 ACCACATAATTATGGAGTACTTGGAT 57.954 34.615 25.45 11.85 39.46 3.41
4895 5237 7.939039 ACCACATAATTATGGAGTACTTGGATG 59.061 37.037 25.45 12.06 39.46 3.51
4896 5238 7.391554 CCACATAATTATGGAGTACTTGGATGG 59.608 40.741 25.45 16.19 38.34 3.51
4897 5239 7.391554 CACATAATTATGGAGTACTTGGATGGG 59.608 40.741 25.45 0.00 38.00 4.00
4898 5240 3.857157 TTATGGAGTACTTGGATGGGC 57.143 47.619 0.00 0.00 0.00 5.36
4899 5241 0.846693 ATGGAGTACTTGGATGGGCC 59.153 55.000 0.00 0.00 37.10 5.80
4900 5242 0.253160 TGGAGTACTTGGATGGGCCT 60.253 55.000 4.53 0.00 37.63 5.19
4901 5243 0.470341 GGAGTACTTGGATGGGCCTC 59.530 60.000 4.53 0.00 37.63 4.70
4902 5244 0.105039 GAGTACTTGGATGGGCCTCG 59.895 60.000 4.53 0.00 37.63 4.63
4903 5245 1.523938 GTACTTGGATGGGCCTCGC 60.524 63.158 4.53 0.00 37.63 5.03
4915 5257 3.449227 CCTCGCCAGTCGCCAGTA 61.449 66.667 0.00 0.00 38.27 2.74
4918 5260 1.148157 CTCGCCAGTCGCCAGTAATG 61.148 60.000 0.00 0.00 38.27 1.90
5031 5380 1.083489 GCTTGCCGTGTTAGCATACA 58.917 50.000 0.00 0.00 40.59 2.29
5032 5381 1.202031 GCTTGCCGTGTTAGCATACAC 60.202 52.381 10.37 10.37 43.86 2.90
5033 5382 2.346803 CTTGCCGTGTTAGCATACACT 58.653 47.619 16.23 0.00 44.85 3.55
5034 5383 3.517602 CTTGCCGTGTTAGCATACACTA 58.482 45.455 16.23 3.81 44.85 2.74
5035 5384 3.159353 TGCCGTGTTAGCATACACTAG 57.841 47.619 16.23 10.25 44.85 2.57
5067 5418 5.163550 GCACTACAAACTTCCTCAAACCTTT 60.164 40.000 0.00 0.00 0.00 3.11
5077 5428 6.431234 ACTTCCTCAAACCTTTGATCACATAC 59.569 38.462 0.00 0.00 45.26 2.39
5080 5431 7.331026 TCCTCAAACCTTTGATCACATACTAG 58.669 38.462 0.00 0.00 45.26 2.57
5081 5432 7.038302 TCCTCAAACCTTTGATCACATACTAGT 60.038 37.037 0.00 0.00 45.26 2.57
5082 5433 8.258007 CCTCAAACCTTTGATCACATACTAGTA 58.742 37.037 4.77 4.77 45.26 1.82
5151 5507 2.489722 GCCCTTCACAAATCAAGAGTCC 59.510 50.000 0.00 0.00 0.00 3.85
5152 5508 3.754965 CCCTTCACAAATCAAGAGTCCA 58.245 45.455 0.00 0.00 0.00 4.02
5153 5509 4.338879 CCCTTCACAAATCAAGAGTCCAT 58.661 43.478 0.00 0.00 0.00 3.41
5154 5510 4.157289 CCCTTCACAAATCAAGAGTCCATG 59.843 45.833 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 8.934825 GCAAACAACATTATATTGTGGAATTGT 58.065 29.630 8.77 3.49 40.16 2.71
30 31 2.159761 CGTCCGACGCAAACAACATTAT 60.160 45.455 8.21 0.00 33.65 1.28
89 91 4.250305 ACAGACGCGCAACCCCTT 62.250 61.111 5.73 0.00 0.00 3.95
139 141 1.095600 CGTCACTTCCTCATCGGAGA 58.904 55.000 0.00 0.00 44.28 3.71
144 146 2.329379 GTGTGTCGTCACTTCCTCATC 58.671 52.381 13.77 0.00 44.14 2.92
154 156 2.257371 GCGCTAGGTGTGTCGTCA 59.743 61.111 0.00 0.00 0.00 4.35
164 166 2.047844 CATGGATCCGGCGCTAGG 60.048 66.667 7.64 12.03 0.00 3.02
165 167 2.740055 GCATGGATCCGGCGCTAG 60.740 66.667 7.64 1.17 0.00 3.42
171 173 2.195567 AAATGGCGCATGGATCCGG 61.196 57.895 10.83 0.00 0.00 5.14
172 174 1.008194 CAAATGGCGCATGGATCCG 60.008 57.895 10.83 0.00 0.00 4.18
173 175 0.313043 CTCAAATGGCGCATGGATCC 59.687 55.000 10.83 4.20 0.00 3.36
184 186 3.204827 CCGCCTCCGCTCAAATGG 61.205 66.667 0.00 0.00 0.00 3.16
190 192 4.162690 AATCCACCGCCTCCGCTC 62.163 66.667 0.00 0.00 0.00 5.03
191 193 4.162690 GAATCCACCGCCTCCGCT 62.163 66.667 0.00 0.00 0.00 5.52
193 195 3.470888 AGGAATCCACCGCCTCCG 61.471 66.667 0.61 0.00 32.91 4.63
197 199 2.511600 CGTCAGGAATCCACCGCC 60.512 66.667 0.61 0.00 34.73 6.13
210 212 1.587043 CGCTCAGACTCCTTCCGTCA 61.587 60.000 0.00 0.00 33.89 4.35
211 213 1.137825 CGCTCAGACTCCTTCCGTC 59.862 63.158 0.00 0.00 0.00 4.79
266 268 3.186047 GATGGACGTCCGGTTGCG 61.186 66.667 28.70 7.84 39.43 4.85
271 273 1.109920 ATGAGGAGATGGACGTCCGG 61.110 60.000 28.70 0.00 37.97 5.14
273 275 1.339610 CAGATGAGGAGATGGACGTCC 59.660 57.143 28.17 28.17 0.00 4.79
275 277 1.407936 CCAGATGAGGAGATGGACGT 58.592 55.000 0.00 0.00 34.60 4.34
276 278 0.678395 CCCAGATGAGGAGATGGACG 59.322 60.000 0.00 0.00 34.60 4.79
277 279 0.396060 GCCCAGATGAGGAGATGGAC 59.604 60.000 0.00 0.00 34.60 4.02
278 280 0.765903 GGCCCAGATGAGGAGATGGA 60.766 60.000 0.00 0.00 34.60 3.41
298 301 2.179517 CCTGACCTCGTCTCACGC 59.820 66.667 0.00 0.00 42.21 5.34
303 306 1.674980 GTCGACCCTGACCTCGTCT 60.675 63.158 3.51 0.00 33.15 4.18
306 309 1.654954 ATTCGTCGACCCTGACCTCG 61.655 60.000 10.58 0.00 35.40 4.63
310 313 0.179134 CCAGATTCGTCGACCCTGAC 60.179 60.000 19.14 0.00 35.49 3.51
313 316 1.038130 CCTCCAGATTCGTCGACCCT 61.038 60.000 10.58 0.00 0.00 4.34
321 324 0.461961 GTCCTCCACCTCCAGATTCG 59.538 60.000 0.00 0.00 0.00 3.34
322 325 1.760029 GAGTCCTCCACCTCCAGATTC 59.240 57.143 0.00 0.00 0.00 2.52
323 326 1.872773 GAGTCCTCCACCTCCAGATT 58.127 55.000 0.00 0.00 0.00 2.40
324 327 0.396417 CGAGTCCTCCACCTCCAGAT 60.396 60.000 0.00 0.00 0.00 2.90
325 328 1.000771 CGAGTCCTCCACCTCCAGA 60.001 63.158 0.00 0.00 0.00 3.86
329 332 1.110518 GGATCCGAGTCCTCCACCTC 61.111 65.000 0.00 0.00 35.32 3.85
335 338 2.725008 CAGCGGATCCGAGTCCTC 59.275 66.667 37.64 18.25 42.83 3.71
370 383 4.078516 CCAACCTCCCGTCCGACC 62.079 72.222 0.00 0.00 0.00 4.79
372 385 4.626402 ACCCAACCTCCCGTCCGA 62.626 66.667 0.00 0.00 0.00 4.55
374 387 2.926242 TCACCCAACCTCCCGTCC 60.926 66.667 0.00 0.00 0.00 4.79
375 388 2.346365 GTCACCCAACCTCCCGTC 59.654 66.667 0.00 0.00 0.00 4.79
383 396 1.003718 CTCCCCTTCGTCACCCAAC 60.004 63.158 0.00 0.00 0.00 3.77
390 403 0.902531 TCAATCCACTCCCCTTCGTC 59.097 55.000 0.00 0.00 0.00 4.20
394 407 1.355720 CCACTTCAATCCACTCCCCTT 59.644 52.381 0.00 0.00 0.00 3.95
430 443 0.033504 TATTTCTCCCATCCGCTCGC 59.966 55.000 0.00 0.00 0.00 5.03
435 448 4.019321 ACCCACATATATTTCTCCCATCCG 60.019 45.833 0.00 0.00 0.00 4.18
443 456 4.387437 CCCACCCAACCCACATATATTTCT 60.387 45.833 0.00 0.00 0.00 2.52
444 457 3.895041 CCCACCCAACCCACATATATTTC 59.105 47.826 0.00 0.00 0.00 2.17
445 458 3.922375 CCCACCCAACCCACATATATTT 58.078 45.455 0.00 0.00 0.00 1.40
446 459 2.425683 GCCCACCCAACCCACATATATT 60.426 50.000 0.00 0.00 0.00 1.28
448 461 0.553819 GCCCACCCAACCCACATATA 59.446 55.000 0.00 0.00 0.00 0.86
449 462 1.221213 AGCCCACCCAACCCACATAT 61.221 55.000 0.00 0.00 0.00 1.78
450 463 0.550393 TAGCCCACCCAACCCACATA 60.550 55.000 0.00 0.00 0.00 2.29
451 464 1.854979 TAGCCCACCCAACCCACAT 60.855 57.895 0.00 0.00 0.00 3.21
452 465 2.450699 TAGCCCACCCAACCCACA 60.451 61.111 0.00 0.00 0.00 4.17
453 466 2.355115 CTAGCCCACCCAACCCAC 59.645 66.667 0.00 0.00 0.00 4.61
454 467 3.657350 GCTAGCCCACCCAACCCA 61.657 66.667 2.29 0.00 0.00 4.51
502 517 4.314440 GCGGATATGGGGCGCTCA 62.314 66.667 10.74 8.16 0.00 4.26
532 547 2.747686 GGCACCCTTCGTCTCCAA 59.252 61.111 0.00 0.00 0.00 3.53
535 550 3.644399 GACCGGCACCCTTCGTCTC 62.644 68.421 0.00 0.00 0.00 3.36
556 571 2.440980 GGGCCTCCAACATCTGGC 60.441 66.667 0.84 0.00 45.98 4.85
558 573 0.251916 TAACGGGCCTCCAACATCTG 59.748 55.000 0.84 0.00 0.00 2.90
559 574 0.988832 TTAACGGGCCTCCAACATCT 59.011 50.000 0.84 0.00 0.00 2.90
562 577 0.475044 ACTTTAACGGGCCTCCAACA 59.525 50.000 0.84 0.00 0.00 3.33
566 581 0.738762 GACGACTTTAACGGGCCTCC 60.739 60.000 0.84 0.00 34.93 4.30
569 584 0.320160 ACTGACGACTTTAACGGGCC 60.320 55.000 0.00 0.00 34.93 5.80
571 586 1.790623 CACACTGACGACTTTAACGGG 59.209 52.381 0.00 0.00 34.93 5.28
573 588 1.790623 CCCACACTGACGACTTTAACG 59.209 52.381 0.00 0.00 0.00 3.18
577 592 1.663695 CAACCCACACTGACGACTTT 58.336 50.000 0.00 0.00 0.00 2.66
581 596 0.179032 AATGCAACCCACACTGACGA 60.179 50.000 0.00 0.00 0.00 4.20
585 600 1.066908 ACGAAAATGCAACCCACACTG 59.933 47.619 0.00 0.00 0.00 3.66
589 604 1.336755 AGTCACGAAAATGCAACCCAC 59.663 47.619 0.00 0.00 0.00 4.61
593 608 2.290641 AGTCCAGTCACGAAAATGCAAC 59.709 45.455 0.00 0.00 0.00 4.17
595 610 1.872952 CAGTCCAGTCACGAAAATGCA 59.127 47.619 0.00 0.00 0.00 3.96
596 611 1.873591 ACAGTCCAGTCACGAAAATGC 59.126 47.619 0.00 0.00 0.00 3.56
604 619 0.946221 CAAGCGGACAGTCCAGTCAC 60.946 60.000 20.13 3.19 40.29 3.67
608 623 2.046892 CCCAAGCGGACAGTCCAG 60.047 66.667 20.13 12.91 35.91 3.86
619 634 1.648467 CCTAGCTCAAACGCCCAAGC 61.648 60.000 0.00 0.00 34.95 4.01
621 636 1.002624 CCCTAGCTCAAACGCCCAA 60.003 57.895 0.00 0.00 0.00 4.12
622 637 2.668632 CCCTAGCTCAAACGCCCA 59.331 61.111 0.00 0.00 0.00 5.36
623 638 2.124695 CCCCTAGCTCAAACGCCC 60.125 66.667 0.00 0.00 0.00 6.13
624 639 2.824489 GCCCCTAGCTCAAACGCC 60.824 66.667 0.00 0.00 38.99 5.68
625 640 3.195698 CGCCCCTAGCTCAAACGC 61.196 66.667 0.00 0.00 40.39 4.84
626 641 1.810030 GACGCCCCTAGCTCAAACG 60.810 63.158 0.00 0.00 40.39 3.60
627 642 0.741221 CAGACGCCCCTAGCTCAAAC 60.741 60.000 0.00 0.00 40.39 2.93
628 643 1.596934 CAGACGCCCCTAGCTCAAA 59.403 57.895 0.00 0.00 40.39 2.69
629 644 2.359169 CCAGACGCCCCTAGCTCAA 61.359 63.158 0.00 0.00 40.39 3.02
630 645 2.759973 CCAGACGCCCCTAGCTCA 60.760 66.667 0.00 0.00 40.39 4.26
631 646 4.228567 GCCAGACGCCCCTAGCTC 62.229 72.222 0.00 0.00 40.39 4.09
632 647 4.787280 AGCCAGACGCCCCTAGCT 62.787 66.667 0.00 0.00 40.39 3.32
633 648 4.537433 CAGCCAGACGCCCCTAGC 62.537 72.222 0.00 0.00 38.78 3.42
634 649 1.739338 CTACAGCCAGACGCCCCTAG 61.739 65.000 0.00 0.00 38.78 3.02
635 650 1.756950 CTACAGCCAGACGCCCCTA 60.757 63.158 0.00 0.00 38.78 3.53
636 651 2.880629 ATCTACAGCCAGACGCCCCT 62.881 60.000 0.00 0.00 38.78 4.79
645 660 5.744171 TCAAGATAAAAGCATCTACAGCCA 58.256 37.500 0.00 0.00 34.08 4.75
859 878 3.009115 TTTGAGCGAGGGAGGGGG 61.009 66.667 0.00 0.00 0.00 5.40
985 1005 0.951040 GGTGTAGTGGCTGACTGTGC 60.951 60.000 0.00 0.00 35.96 4.57
995 1015 1.144057 GGATCTGCCGGTGTAGTGG 59.856 63.158 1.90 0.00 0.00 4.00
1191 1340 1.409790 CTGCACAGATCTGAGAGGAGG 59.590 57.143 29.27 9.72 0.00 4.30
1419 1569 1.442520 CAGTGAAAATGGCGGCGTG 60.443 57.895 9.37 0.00 0.00 5.34
1605 1760 1.686052 TGAACCAAACCCAACTCATGC 59.314 47.619 0.00 0.00 0.00 4.06
1678 1833 1.725641 TCAAGCAACTCATACTGCGG 58.274 50.000 0.00 0.00 43.51 5.69
1767 1944 0.752658 TGACCTCCATCCTGTATGCG 59.247 55.000 0.00 0.00 33.92 4.73
1971 2171 5.281693 TGCTATTGACAAGAATGTTGACG 57.718 39.130 0.00 0.00 40.74 4.35
2010 2210 2.580470 CGCGCCGATGATGTCAGAC 61.580 63.158 0.00 0.00 0.00 3.51
2111 2311 9.797642 AGCTACATGGATGTGATTCATAATAAA 57.202 29.630 2.38 0.00 41.89 1.40
2112 2312 9.440773 GAGCTACATGGATGTGATTCATAATAA 57.559 33.333 2.38 0.00 41.89 1.40
2113 2313 8.819845 AGAGCTACATGGATGTGATTCATAATA 58.180 33.333 2.38 0.00 41.89 0.98
2114 2314 7.606839 CAGAGCTACATGGATGTGATTCATAAT 59.393 37.037 2.38 0.00 41.89 1.28
2162 2384 5.930135 AGGATACAGGAATGTGTTGGATAC 58.070 41.667 0.00 0.00 41.41 2.24
2182 2404 5.410439 GCGACACACTCCTAATTTAAAAGGA 59.590 40.000 8.12 8.12 39.63 3.36
2204 2427 3.061006 GTCAATTTGTTTCAACTGCAGCG 60.061 43.478 15.27 5.38 0.00 5.18
2206 2429 5.104374 ACTGTCAATTTGTTTCAACTGCAG 58.896 37.500 13.48 13.48 0.00 4.41
2207 2430 5.070770 ACTGTCAATTTGTTTCAACTGCA 57.929 34.783 0.00 0.00 0.00 4.41
2298 2531 8.687292 TCTGTAAGAGAACTAACTGAACTGTA 57.313 34.615 0.00 0.00 38.67 2.74
2341 2574 5.594317 ACATAATCCAGTTCATTTACAGGGC 59.406 40.000 0.00 0.00 0.00 5.19
2375 2608 8.134895 TGGTTCAAGTCAAAGTTCAATTATCAC 58.865 33.333 0.00 0.00 0.00 3.06
2418 2651 7.881775 ATTTGAACTGTTAACCTGAAAGACT 57.118 32.000 2.48 0.00 34.07 3.24
2426 2659 9.106070 GTCGGATAATATTTGAACTGTTAACCT 57.894 33.333 2.48 0.00 0.00 3.50
2465 2699 9.993454 CCATGATGAATATACCACAGGATATAG 57.007 37.037 0.00 0.00 0.00 1.31
2494 2730 6.044046 CCACTGTTACAAATGCATGCATATT 58.956 36.000 32.36 23.41 35.31 1.28
2504 2740 3.673052 CGGGCATTCCACTGTTACAAATG 60.673 47.826 3.82 3.82 34.36 2.32
2540 2776 8.299570 GCTTCCAAAAGAACTCTATCATTCAAA 58.700 33.333 0.00 0.00 34.14 2.69
2953 3194 2.094286 CACCATGATCTCTATCCGGCTC 60.094 54.545 0.00 0.00 30.28 4.70
3062 3303 6.258507 GTGCTGGAAATGAGAAAAACAAATGT 59.741 34.615 0.00 0.00 0.00 2.71
3118 3359 0.746659 GGTTTGTGGCATCATAGGGC 59.253 55.000 0.00 0.00 0.00 5.19
3175 3416 0.809241 CCATTGCGTCTCTCTCAGGC 60.809 60.000 0.00 0.00 0.00 4.85
3205 3446 3.592059 CTTGCCACCAGGAAATGATTTG 58.408 45.455 0.00 0.00 36.89 2.32
3259 3500 6.159222 TCCATCCTAGCATAATATGGAAGCAT 59.841 38.462 2.13 0.00 38.36 3.79
3269 3510 5.775813 AGAGCAATCCATCCTAGCATAAT 57.224 39.130 0.00 0.00 0.00 1.28
3280 3521 3.723681 TCCAGGGAATTAGAGCAATCCAT 59.276 43.478 0.00 0.00 0.00 3.41
3309 3550 8.134895 GCTCTACACATATATTCCTGATAGAGC 58.865 40.741 19.60 19.60 42.81 4.09
3387 3628 4.759693 TCAAATTTCACACGTATTGGAGCT 59.240 37.500 0.00 0.00 0.00 4.09
3486 3727 3.118261 AGACTGCAAGAGGAAGTTGTGAA 60.118 43.478 0.00 0.00 37.43 3.18
3659 3904 2.948979 ACAAACTGCTCGATTGTTCCAA 59.051 40.909 0.00 0.00 35.38 3.53
3664 3909 4.632153 ACTCTAACAAACTGCTCGATTGT 58.368 39.130 0.00 0.00 39.92 2.71
3695 3941 4.521062 ATGTGCTCCTCGCCTCGC 62.521 66.667 0.00 0.00 38.05 5.03
3696 3942 2.004808 TACATGTGCTCCTCGCCTCG 62.005 60.000 9.11 0.00 38.05 4.63
3734 3980 2.740055 GCCATCTATCCTGCCGCG 60.740 66.667 0.00 0.00 0.00 6.46
3799 4045 3.055530 ACCACTAAGAGAACTCTGCATGG 60.056 47.826 18.54 18.54 40.36 3.66
3847 4093 3.266510 GGCAACTGTACTGATGGATGA 57.733 47.619 6.77 0.00 0.00 2.92
3932 4179 3.266510 TGTGAGTGACATCAATAGGGC 57.733 47.619 0.00 0.00 0.00 5.19
4090 4343 4.710375 TGGTAAGAGAGGTCAATACAGTCC 59.290 45.833 0.00 0.00 0.00 3.85
4158 4417 7.063662 TGCTCGCGTAAGTTGAAGATTTATTTA 59.936 33.333 5.77 0.00 41.68 1.40
4162 4421 4.239304 TGCTCGCGTAAGTTGAAGATTTA 58.761 39.130 5.77 0.00 41.68 1.40
4177 4436 2.159667 TGATTGTTTCAGATTGCTCGCG 60.160 45.455 0.00 0.00 0.00 5.87
4238 4497 3.077359 ACAGCACTAAGAAACTCCATGC 58.923 45.455 0.00 0.00 0.00 4.06
4273 4532 1.370051 CAAGCGCGGCATCATGATG 60.370 57.895 28.04 28.04 41.60 3.07
4286 4545 2.967459 TGTTGTCACATAAGCAAGCG 57.033 45.000 0.00 0.00 0.00 4.68
4288 4547 5.630680 GGAACATTGTTGTCACATAAGCAAG 59.369 40.000 6.80 0.00 34.06 4.01
4337 4596 3.376234 ACGAATGATGAGCTGGTGAATTG 59.624 43.478 0.00 0.00 0.00 2.32
4338 4597 3.376234 CACGAATGATGAGCTGGTGAATT 59.624 43.478 0.00 0.00 0.00 2.17
4340 4599 2.028203 TCACGAATGATGAGCTGGTGAA 60.028 45.455 0.00 0.00 30.77 3.18
4371 4630 2.491693 GCAGCTACCCATTTTGTGCTAA 59.508 45.455 0.00 0.00 0.00 3.09
4402 4667 4.335416 TCAGTTTGGGAGATCAAATCACC 58.665 43.478 0.00 0.00 38.64 4.02
4403 4668 5.620879 GCTTCAGTTTGGGAGATCAAATCAC 60.621 44.000 0.00 0.00 38.64 3.06
4404 4669 4.460382 GCTTCAGTTTGGGAGATCAAATCA 59.540 41.667 0.00 0.00 38.64 2.57
4405 4670 4.460382 TGCTTCAGTTTGGGAGATCAAATC 59.540 41.667 0.00 0.00 38.64 2.17
4406 4671 4.219288 GTGCTTCAGTTTGGGAGATCAAAT 59.781 41.667 0.00 0.00 38.64 2.32
4407 4672 3.569701 GTGCTTCAGTTTGGGAGATCAAA 59.430 43.478 0.00 0.00 34.64 2.69
4408 4673 3.149196 GTGCTTCAGTTTGGGAGATCAA 58.851 45.455 0.00 0.00 0.00 2.57
4431 4696 3.742327 GCCTCACAGCTATGCACTTATGA 60.742 47.826 0.00 0.00 0.00 2.15
4477 4742 3.119193 CCACTGGTTGGTGTGCAC 58.881 61.111 10.75 10.75 41.10 4.57
4485 4750 0.031857 TTGATTTGCGCCACTGGTTG 59.968 50.000 4.18 0.00 0.00 3.77
4491 4756 1.913403 CTCGATTTTGATTTGCGCCAC 59.087 47.619 4.18 0.00 0.00 5.01
4492 4757 1.135431 CCTCGATTTTGATTTGCGCCA 60.135 47.619 4.18 0.00 0.00 5.69
4493 4758 1.548986 CCTCGATTTTGATTTGCGCC 58.451 50.000 4.18 0.00 0.00 6.53
4496 4764 1.548986 CGCCCTCGATTTTGATTTGC 58.451 50.000 0.00 0.00 38.10 3.68
4508 4776 2.262915 GATGATAGGCCGCCCTCG 59.737 66.667 5.55 0.00 41.75 4.63
4512 4780 0.674895 GATGGTGATGATAGGCCGCC 60.675 60.000 0.00 0.00 0.00 6.13
4516 4784 3.834813 TCAGTAGGATGGTGATGATAGGC 59.165 47.826 0.00 0.00 0.00 3.93
4521 4789 4.142160 CGAGTTTCAGTAGGATGGTGATGA 60.142 45.833 0.00 0.00 0.00 2.92
4527 4795 4.655762 TCATCGAGTTTCAGTAGGATGG 57.344 45.455 0.00 0.00 33.79 3.51
4530 4798 6.152831 TCTCATTTCATCGAGTTTCAGTAGGA 59.847 38.462 0.00 0.00 0.00 2.94
4531 4799 6.333416 TCTCATTTCATCGAGTTTCAGTAGG 58.667 40.000 0.00 0.00 0.00 3.18
4533 4801 6.808704 CACTCTCATTTCATCGAGTTTCAGTA 59.191 38.462 0.00 0.00 34.72 2.74
4536 4804 5.783111 TCACTCTCATTTCATCGAGTTTCA 58.217 37.500 0.00 0.00 34.72 2.69
4537 4805 6.712241 TTCACTCTCATTTCATCGAGTTTC 57.288 37.500 0.00 0.00 34.72 2.78
4540 4808 5.541845 TGTTTCACTCTCATTTCATCGAGT 58.458 37.500 0.00 0.00 37.22 4.18
4541 4809 6.146837 AGTTGTTTCACTCTCATTTCATCGAG 59.853 38.462 0.00 0.00 0.00 4.04
4542 4810 5.991606 AGTTGTTTCACTCTCATTTCATCGA 59.008 36.000 0.00 0.00 0.00 3.59
4543 4811 6.073602 TGAGTTGTTTCACTCTCATTTCATCG 60.074 38.462 2.70 0.00 43.32 3.84
4544 4812 7.194607 TGAGTTGTTTCACTCTCATTTCATC 57.805 36.000 2.70 0.00 43.32 2.92
4545 4813 7.756395 ATGAGTTGTTTCACTCTCATTTCAT 57.244 32.000 2.70 0.00 42.56 2.57
4546 4814 8.150296 TCTATGAGTTGTTTCACTCTCATTTCA 58.850 33.333 10.90 0.00 42.56 2.69
4547 4815 8.539770 TCTATGAGTTGTTTCACTCTCATTTC 57.460 34.615 10.90 0.00 42.56 2.17
4548 4816 7.605691 CCTCTATGAGTTGTTTCACTCTCATTT 59.394 37.037 10.90 0.00 42.56 2.32
4549 4817 7.102346 CCTCTATGAGTTGTTTCACTCTCATT 58.898 38.462 10.90 0.00 42.56 2.57
4550 4818 6.638610 CCTCTATGAGTTGTTTCACTCTCAT 58.361 40.000 10.55 10.55 45.56 2.90
4551 4819 5.567623 GCCTCTATGAGTTGTTTCACTCTCA 60.568 44.000 2.70 0.00 43.32 3.27
4552 4820 4.867608 GCCTCTATGAGTTGTTTCACTCTC 59.132 45.833 2.70 0.00 43.32 3.20
4553 4821 4.530161 AGCCTCTATGAGTTGTTTCACTCT 59.470 41.667 2.70 0.00 43.32 3.24
4554 4822 4.826556 AGCCTCTATGAGTTGTTTCACTC 58.173 43.478 0.00 0.00 43.23 3.51
4555 4823 4.899352 AGCCTCTATGAGTTGTTTCACT 57.101 40.909 0.00 0.00 0.00 3.41
4556 4824 5.725362 ACTAGCCTCTATGAGTTGTTTCAC 58.275 41.667 0.00 0.00 0.00 3.18
4557 4825 6.166279 CAACTAGCCTCTATGAGTTGTTTCA 58.834 40.000 5.63 0.00 42.40 2.69
4558 4826 5.582665 CCAACTAGCCTCTATGAGTTGTTTC 59.417 44.000 11.46 0.00 44.71 2.78
4559 4827 5.248477 TCCAACTAGCCTCTATGAGTTGTTT 59.752 40.000 11.46 0.00 44.71 2.83
4562 4830 5.344743 TTCCAACTAGCCTCTATGAGTTG 57.655 43.478 6.63 6.63 45.41 3.16
4563 4831 6.374417 TTTTCCAACTAGCCTCTATGAGTT 57.626 37.500 0.00 0.00 32.38 3.01
4565 4833 6.825721 ACATTTTTCCAACTAGCCTCTATGAG 59.174 38.462 0.00 0.00 0.00 2.90
4566 4834 6.721318 ACATTTTTCCAACTAGCCTCTATGA 58.279 36.000 0.00 0.00 0.00 2.15
4567 4835 7.396540 AACATTTTTCCAACTAGCCTCTATG 57.603 36.000 0.00 0.00 0.00 2.23
4568 4836 9.528489 TTTAACATTTTTCCAACTAGCCTCTAT 57.472 29.630 0.00 0.00 0.00 1.98
4569 4837 8.927675 TTTAACATTTTTCCAACTAGCCTCTA 57.072 30.769 0.00 0.00 0.00 2.43
4570 4838 7.833285 TTTAACATTTTTCCAACTAGCCTCT 57.167 32.000 0.00 0.00 0.00 3.69
4571 4839 9.489084 AAATTTAACATTTTTCCAACTAGCCTC 57.511 29.630 0.00 0.00 0.00 4.70
4572 4840 9.271828 CAAATTTAACATTTTTCCAACTAGCCT 57.728 29.630 0.00 0.00 0.00 4.58
4573 4841 9.051679 ACAAATTTAACATTTTTCCAACTAGCC 57.948 29.630 0.00 0.00 0.00 3.93
4587 4855 9.418045 CCGAAATTCTACCAACAAATTTAACAT 57.582 29.630 0.00 0.00 33.85 2.71
4589 4857 7.409980 CGCCGAAATTCTACCAACAAATTTAAC 60.410 37.037 0.00 0.00 33.85 2.01
4590 4858 6.583050 CGCCGAAATTCTACCAACAAATTTAA 59.417 34.615 0.00 0.00 33.85 1.52
4591 4859 6.087522 CGCCGAAATTCTACCAACAAATTTA 58.912 36.000 0.00 0.00 33.85 1.40
4592 4860 4.920927 CGCCGAAATTCTACCAACAAATTT 59.079 37.500 0.00 0.00 35.79 1.82
4594 4862 3.504520 ACGCCGAAATTCTACCAACAAAT 59.495 39.130 0.00 0.00 0.00 2.32
4596 4864 2.496111 ACGCCGAAATTCTACCAACAA 58.504 42.857 0.00 0.00 0.00 2.83
4597 4865 2.172851 ACGCCGAAATTCTACCAACA 57.827 45.000 0.00 0.00 0.00 3.33
4598 4866 4.870221 AATACGCCGAAATTCTACCAAC 57.130 40.909 0.00 0.00 0.00 3.77
4599 4867 6.981762 TTTAATACGCCGAAATTCTACCAA 57.018 33.333 0.00 0.00 0.00 3.67
4600 4868 7.556733 AATTTAATACGCCGAAATTCTACCA 57.443 32.000 0.00 0.00 28.93 3.25
4601 4869 7.911727 ACAAATTTAATACGCCGAAATTCTACC 59.088 33.333 0.00 0.00 32.88 3.18
4602 4870 8.831000 ACAAATTTAATACGCCGAAATTCTAC 57.169 30.769 0.00 0.00 32.88 2.59
4603 4871 9.493206 GAACAAATTTAATACGCCGAAATTCTA 57.507 29.630 0.00 0.00 32.88 2.10
4604 4872 8.024285 TGAACAAATTTAATACGCCGAAATTCT 58.976 29.630 0.00 0.00 32.88 2.40
4605 4873 8.164058 TGAACAAATTTAATACGCCGAAATTC 57.836 30.769 0.00 0.00 32.88 2.17
4606 4874 8.522178 TTGAACAAATTTAATACGCCGAAATT 57.478 26.923 0.00 0.00 34.94 1.82
4607 4875 8.429299 GTTTGAACAAATTTAATACGCCGAAAT 58.571 29.630 3.34 0.00 32.36 2.17
4608 4876 7.434307 TGTTTGAACAAATTTAATACGCCGAAA 59.566 29.630 3.34 0.00 35.67 3.46
4609 4877 6.916387 TGTTTGAACAAATTTAATACGCCGAA 59.084 30.769 3.34 0.00 35.67 4.30
4610 4878 6.436261 TGTTTGAACAAATTTAATACGCCGA 58.564 32.000 3.34 0.00 35.67 5.54
4611 4879 6.677027 TGTTTGAACAAATTTAATACGCCG 57.323 33.333 3.34 0.00 35.67 6.46
4638 4906 1.056660 TCTTCACCCAGACCAAGGAC 58.943 55.000 0.00 0.00 0.00 3.85
4643 4911 1.843851 ACTTTGTCTTCACCCAGACCA 59.156 47.619 0.00 0.00 42.39 4.02
4645 4913 3.067833 GCTACTTTGTCTTCACCCAGAC 58.932 50.000 0.00 0.00 43.23 3.51
4647 4915 3.126001 TGCTACTTTGTCTTCACCCAG 57.874 47.619 0.00 0.00 0.00 4.45
4649 4917 7.048512 ACTTATATGCTACTTTGTCTTCACCC 58.951 38.462 0.00 0.00 0.00 4.61
4672 4945 9.515226 TTGCAAGTTCTCCTATAAATAACAACT 57.485 29.630 0.00 0.00 0.00 3.16
4679 4953 7.408756 TTGCATTGCAAGTTCTCCTATAAAT 57.591 32.000 19.77 0.00 43.99 1.40
4698 4972 9.522644 GATCACACGATTTACATGCTCTTGCAT 62.523 40.741 0.00 0.00 45.79 3.96
4706 4980 5.266242 GGAAAGATCACACGATTTACATGC 58.734 41.667 0.00 0.00 29.66 4.06
4715 4989 2.304470 TGGAATGGGAAAGATCACACGA 59.696 45.455 0.00 0.00 43.10 4.35
4717 4991 2.755103 GGTGGAATGGGAAAGATCACAC 59.245 50.000 0.00 0.00 43.10 3.82
4720 4994 3.181424 TGTTGGTGGAATGGGAAAGATCA 60.181 43.478 0.00 0.00 0.00 2.92
4736 5010 4.895297 AGAGAACATTCCACATTTGTTGGT 59.105 37.500 0.00 0.00 33.92 3.67
4737 5011 5.009911 TGAGAGAACATTCCACATTTGTTGG 59.990 40.000 0.00 0.00 33.92 3.77
4742 5016 6.150140 GCTTACTGAGAGAACATTCCACATTT 59.850 38.462 0.00 0.00 0.00 2.32
4751 5025 6.291648 TGATTGAGCTTACTGAGAGAACAT 57.708 37.500 0.00 0.00 0.00 2.71
4753 5027 7.608308 AATTGATTGAGCTTACTGAGAGAAC 57.392 36.000 0.00 0.00 0.00 3.01
4754 5028 9.322773 CATAATTGATTGAGCTTACTGAGAGAA 57.677 33.333 0.00 0.00 0.00 2.87
4773 5050 9.991906 AGAAAATAGCATCCCAATTCATAATTG 57.008 29.630 5.56 5.56 46.09 2.32
4776 5054 8.796475 GCTAGAAAATAGCATCCCAATTCATAA 58.204 33.333 0.00 0.00 40.14 1.90
4778 5056 6.210185 GGCTAGAAAATAGCATCCCAATTCAT 59.790 38.462 8.96 0.00 42.06 2.57
4781 5059 4.520492 CGGCTAGAAAATAGCATCCCAATT 59.480 41.667 8.96 0.00 42.06 2.32
4783 5061 3.135712 TCGGCTAGAAAATAGCATCCCAA 59.864 43.478 8.96 0.00 42.06 4.12
4786 5064 7.119846 ACAATATTCGGCTAGAAAATAGCATCC 59.880 37.037 8.96 0.00 42.91 3.51
4787 5065 7.959651 CACAATATTCGGCTAGAAAATAGCATC 59.040 37.037 8.96 0.00 42.91 3.91
4790 5068 6.603095 CCACAATATTCGGCTAGAAAATAGC 58.397 40.000 0.00 0.00 42.91 2.97
4791 5069 6.204688 TGCCACAATATTCGGCTAGAAAATAG 59.795 38.462 20.79 0.00 46.39 1.73
4792 5070 6.058833 TGCCACAATATTCGGCTAGAAAATA 58.941 36.000 20.79 0.00 46.39 1.40
4793 5071 4.887071 TGCCACAATATTCGGCTAGAAAAT 59.113 37.500 20.79 0.00 46.39 1.82
4794 5072 4.265893 TGCCACAATATTCGGCTAGAAAA 58.734 39.130 20.79 2.98 46.39 2.29
4797 5077 3.769739 ATGCCACAATATTCGGCTAGA 57.230 42.857 20.79 6.66 46.39 2.43
4799 5079 6.892658 ATAAAATGCCACAATATTCGGCTA 57.107 33.333 20.79 11.29 46.39 3.93
4803 5083 9.599322 GTCTTCTATAAAATGCCACAATATTCG 57.401 33.333 0.00 0.00 0.00 3.34
4805 5085 9.420118 TGGTCTTCTATAAAATGCCACAATATT 57.580 29.630 0.00 0.00 0.00 1.28
4809 5150 6.889177 TGATGGTCTTCTATAAAATGCCACAA 59.111 34.615 0.00 0.00 0.00 3.33
4829 5170 9.357652 CTTTATGTGGTATTTTCTGTTTGATGG 57.642 33.333 0.00 0.00 0.00 3.51
4844 5185 9.378551 GTACATGACATCTTTCTTTATGTGGTA 57.621 33.333 0.00 0.00 36.48 3.25
4851 5192 9.952030 TTATGTGGTACATGACATCTTTCTTTA 57.048 29.630 0.00 0.00 44.52 1.85
4874 5216 6.485171 GCCCATCCAAGTACTCCATAATTAT 58.515 40.000 0.00 0.00 0.00 1.28
4875 5217 5.222048 GGCCCATCCAAGTACTCCATAATTA 60.222 44.000 0.00 0.00 34.01 1.40
4876 5218 4.447762 GGCCCATCCAAGTACTCCATAATT 60.448 45.833 0.00 0.00 34.01 1.40
4877 5219 3.074538 GGCCCATCCAAGTACTCCATAAT 59.925 47.826 0.00 0.00 34.01 1.28
4878 5220 2.441750 GGCCCATCCAAGTACTCCATAA 59.558 50.000 0.00 0.00 34.01 1.90
4879 5221 2.054799 GGCCCATCCAAGTACTCCATA 58.945 52.381 0.00 0.00 34.01 2.74
4880 5222 0.846693 GGCCCATCCAAGTACTCCAT 59.153 55.000 0.00 0.00 34.01 3.41
4881 5223 0.253160 AGGCCCATCCAAGTACTCCA 60.253 55.000 0.00 0.00 37.29 3.86
4882 5224 0.470341 GAGGCCCATCCAAGTACTCC 59.530 60.000 0.00 0.00 37.29 3.85
4883 5225 0.105039 CGAGGCCCATCCAAGTACTC 59.895 60.000 0.00 0.00 37.29 2.59
4884 5226 1.972660 GCGAGGCCCATCCAAGTACT 61.973 60.000 0.00 0.00 37.29 2.73
4885 5227 1.523938 GCGAGGCCCATCCAAGTAC 60.524 63.158 0.00 0.00 37.29 2.73
4886 5228 2.742116 GGCGAGGCCCATCCAAGTA 61.742 63.158 0.00 0.00 44.06 2.24
4887 5229 4.115199 GGCGAGGCCCATCCAAGT 62.115 66.667 0.00 0.00 44.06 3.16
4900 5242 1.153647 CATTACTGGCGACTGGCGA 60.154 57.895 7.31 0.00 44.92 5.54
4901 5243 0.739462 TTCATTACTGGCGACTGGCG 60.739 55.000 0.00 0.00 44.92 5.69
4902 5244 1.009829 CTTCATTACTGGCGACTGGC 58.990 55.000 0.00 0.00 42.51 4.85
4903 5245 2.271800 GACTTCATTACTGGCGACTGG 58.728 52.381 0.00 0.00 0.00 4.00
4904 5246 2.959516 TGACTTCATTACTGGCGACTG 58.040 47.619 0.00 0.00 0.00 3.51
4905 5247 3.895232 ATGACTTCATTACTGGCGACT 57.105 42.857 0.00 0.00 31.37 4.18
4906 5248 5.232414 GTCTTATGACTTCATTACTGGCGAC 59.768 44.000 0.00 0.00 39.94 5.19
4907 5249 5.105513 TGTCTTATGACTTCATTACTGGCGA 60.106 40.000 9.87 0.00 43.29 5.54
4908 5250 5.109210 TGTCTTATGACTTCATTACTGGCG 58.891 41.667 9.87 0.00 43.29 5.69
4909 5251 7.559590 AATGTCTTATGACTTCATTACTGGC 57.440 36.000 9.87 0.00 43.29 4.85
4915 5257 7.451255 TGTTGGGAAATGTCTTATGACTTCATT 59.549 33.333 9.87 0.00 43.29 2.57
4918 5260 6.206634 TGTGTTGGGAAATGTCTTATGACTTC 59.793 38.462 9.87 6.33 43.29 3.01
4935 5284 2.224042 GGCTTTCCTTCTTTGTGTTGGG 60.224 50.000 0.00 0.00 0.00 4.12
5031 5380 7.309073 GGAAGTTTGTAGTGCTAGTGTACTAGT 60.309 40.741 17.65 0.00 45.85 2.57
5032 5381 7.028361 GGAAGTTTGTAGTGCTAGTGTACTAG 58.972 42.308 13.43 13.43 46.63 2.57
5033 5382 6.718454 AGGAAGTTTGTAGTGCTAGTGTACTA 59.282 38.462 0.00 0.00 39.73 1.82
5034 5383 5.539193 AGGAAGTTTGTAGTGCTAGTGTACT 59.461 40.000 0.00 0.00 41.81 2.73
5035 5384 5.780984 AGGAAGTTTGTAGTGCTAGTGTAC 58.219 41.667 0.00 0.00 0.00 2.90
5151 5507 1.391787 CGCGTGCTGATTAATGCATG 58.608 50.000 13.17 13.17 45.78 4.06
5152 5508 0.317269 GCGCGTGCTGATTAATGCAT 60.317 50.000 15.02 0.00 41.45 3.96
5153 5509 1.062365 GCGCGTGCTGATTAATGCA 59.938 52.632 15.02 0.00 38.39 3.96
5154 5510 0.927083 CTGCGCGTGCTGATTAATGC 60.927 55.000 23.16 0.00 42.14 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.