Multiple sequence alignment - TraesCS1D01G370700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G370700 chr1D 100.000 4000 0 0 1 4000 449280806 449284805 0.000000e+00 7387.0
1 TraesCS1D01G370700 chr1D 78.075 374 53 17 3635 3980 401795615 401795243 4.050000e-50 209.0
2 TraesCS1D01G370700 chr1D 91.270 126 11 0 1021 1146 449309780 449309905 5.310000e-39 172.0
3 TraesCS1D01G370700 chr1D 78.733 221 44 3 137 355 7234777 7234558 1.160000e-30 145.0
4 TraesCS1D01G370700 chr1D 77.169 219 49 1 1889 2107 448787600 448787817 4.200000e-25 126.0
5 TraesCS1D01G370700 chr1A 89.996 2489 117 46 620 3050 544486659 544489073 0.000000e+00 3096.0
6 TraesCS1D01G370700 chr1A 78.736 348 48 17 3638 3962 497582545 497582201 4.050000e-50 209.0
7 TraesCS1D01G370700 chr1A 90.152 132 13 0 1015 1146 544492896 544493027 5.310000e-39 172.0
8 TraesCS1D01G370700 chr1A 78.313 249 36 10 2 238 36598092 36598334 1.160000e-30 145.0
9 TraesCS1D01G370700 chr1A 78.241 216 45 2 1893 2107 544390253 544390467 1.940000e-28 137.0
10 TraesCS1D01G370700 chr1A 89.744 78 5 2 3050 3127 544489137 544489211 3.290000e-16 97.1
11 TraesCS1D01G370700 chr1A 77.778 126 24 4 379 503 444135160 444135038 1.540000e-09 75.0
12 TraesCS1D01G370700 chr1B 88.701 2133 159 37 61 2160 614941671 614943754 0.000000e+00 2529.0
13 TraesCS1D01G370700 chr1B 89.423 936 42 25 2157 3047 614943788 614944711 0.000000e+00 1127.0
14 TraesCS1D01G370700 chr1B 90.773 401 34 2 461 861 614795002 614795399 2.120000e-147 532.0
15 TraesCS1D01G370700 chr1B 90.625 128 12 0 1022 1149 614967999 614968126 1.910000e-38 171.0
16 TraesCS1D01G370700 chr1B 89.000 100 11 0 3395 3494 26825802 26825901 1.510000e-24 124.0
17 TraesCS1D01G370700 chr1B 84.921 126 12 5 1028 1149 614499972 614500094 1.950000e-23 121.0
18 TraesCS1D01G370700 chr1B 72.055 365 66 19 1 353 81754143 81754483 4.290000e-10 76.8
19 TraesCS1D01G370700 chr3A 82.979 376 49 10 2 365 527572820 527573192 3.860000e-85 326.0
20 TraesCS1D01G370700 chr3A 79.255 376 65 8 2 365 31668987 31668613 2.390000e-62 250.0
21 TraesCS1D01G370700 chr3A 91.367 139 11 1 1021 1159 13188541 13188678 5.280000e-44 189.0
22 TraesCS1D01G370700 chr3A 83.529 85 14 0 2525 2609 13190170 13190254 3.310000e-11 80.5
23 TraesCS1D01G370700 chr4D 82.199 382 52 14 1 368 449386565 449386186 8.340000e-82 315.0
24 TraesCS1D01G370700 chr4D 81.818 374 54 6 2 361 19338744 19338371 6.500000e-78 302.0
25 TraesCS1D01G370700 chr4D 77.736 265 46 11 99 355 85117797 85118056 2.490000e-32 150.0
26 TraesCS1D01G370700 chr5B 82.825 361 37 17 3635 3973 488898472 488898829 2.340000e-77 300.0
27 TraesCS1D01G370700 chr5B 80.214 374 57 13 2 361 679309935 679309565 8.520000e-67 265.0
28 TraesCS1D01G370700 chr5B 77.869 366 69 10 2 356 320384790 320385154 2.420000e-52 217.0
29 TraesCS1D01G370700 chr5B 86.250 160 15 5 3201 3355 488890155 488890312 2.470000e-37 167.0
30 TraesCS1D01G370700 chr5B 88.073 109 12 1 3395 3502 579401415 579401307 1.170000e-25 128.0
31 TraesCS1D01G370700 chr5B 88.350 103 12 0 3392 3494 227944907 227945009 1.510000e-24 124.0
32 TraesCS1D01G370700 chr5B 86.364 110 13 1 3395 3502 612986509 612986400 7.020000e-23 119.0
33 TraesCS1D01G370700 chr4A 82.164 342 49 3 2 331 432530997 432530656 2.350000e-72 283.0
34 TraesCS1D01G370700 chr4A 85.714 147 17 3 3829 3973 686622568 686622424 6.920000e-33 152.0
35 TraesCS1D01G370700 chr4A 87.611 113 12 1 3392 3502 691428521 691428409 3.240000e-26 130.0
36 TraesCS1D01G370700 chr4A 84.524 84 13 0 1 84 246651364 246651447 2.560000e-12 84.2
37 TraesCS1D01G370700 chr3B 78.161 348 52 17 1021 1356 8686887 8686552 2.440000e-47 200.0
38 TraesCS1D01G370700 chr3B 84.071 113 16 1 3392 3502 294496799 294496687 1.520000e-19 108.0
39 TraesCS1D01G370700 chr2B 81.275 251 37 9 3732 3973 16846451 16846700 1.130000e-45 195.0
40 TraesCS1D01G370700 chr5A 87.952 166 17 3 3201 3366 513375579 513375741 4.080000e-45 193.0
41 TraesCS1D01G370700 chr3D 87.261 157 16 4 1021 1174 7124579 7124424 4.110000e-40 176.0
42 TraesCS1D01G370700 chr3D 90.099 101 10 0 3395 3495 382120477 382120377 9.020000e-27 132.0
43 TraesCS1D01G370700 chr3D 81.053 95 18 0 2525 2619 7122998 7122904 4.290000e-10 76.8
44 TraesCS1D01G370700 chr7A 80.328 244 32 5 2 234 736284064 736284302 1.910000e-38 171.0
45 TraesCS1D01G370700 chr2A 75.597 377 75 12 2 361 737793499 737793123 1.910000e-38 171.0
46 TraesCS1D01G370700 chr2A 77.308 260 48 7 102 355 716237466 716237212 4.170000e-30 143.0
47 TraesCS1D01G370700 chr6B 89.320 103 11 0 3392 3494 246940426 246940528 3.240000e-26 130.0
48 TraesCS1D01G370700 chr4B 87.069 116 12 3 3388 3502 632858980 632859093 1.170000e-25 128.0
49 TraesCS1D01G370700 chr4B 95.652 46 2 0 3922 3967 654133380 654133425 1.540000e-09 75.0
50 TraesCS1D01G370700 chr7B 88.119 101 12 0 3394 3494 113478794 113478694 1.950000e-23 121.0
51 TraesCS1D01G370700 chr7B 84.000 75 11 1 3125 3199 526872457 526872384 1.990000e-08 71.3
52 TraesCS1D01G370700 chr7B 81.333 75 12 2 3125 3199 526880416 526880344 4.320000e-05 60.2
53 TraesCS1D01G370700 chr2D 76.389 216 49 2 141 355 639675111 639674897 9.080000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G370700 chr1D 449280806 449284805 3999 False 7387.0 7387 100.000 1 4000 1 chr1D.!!$F2 3999
1 TraesCS1D01G370700 chr1A 544486659 544493027 6368 False 1121.7 3096 89.964 620 3127 3 chr1A.!!$F3 2507
2 TraesCS1D01G370700 chr1B 614941671 614944711 3040 False 1828.0 2529 89.062 61 3047 2 chr1B.!!$F6 2986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.036732 GGATCCAACCTGCAGACACA 59.963 55.0 17.39 0.0 0.00 3.72 F
45 46 0.095935 ACGTAGACGAACGATGACCG 59.904 55.0 9.41 0.0 45.68 4.79 F
168 169 0.106894 GCTGGGAGGACCTTATTCCG 59.893 60.0 0.00 0.0 41.04 4.30 F
1837 1869 0.329261 TTTGCTCCAGTGGGATCAGG 59.671 55.0 9.92 0.0 43.91 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1874 1906 0.527113 CATGCATCCGCCAAGAACAA 59.473 50.000 0.00 0.00 37.32 2.83 R
1876 1908 1.226773 GCATGCATCCGCCAAGAAC 60.227 57.895 14.21 0.00 37.32 3.01 R
1886 1918 2.025727 GAAGCGCCTGCATGCATC 59.974 61.111 22.97 14.95 46.23 3.91 R
3169 3406 0.031721 ACGAGTTCGGGTCAGTTGAC 59.968 55.000 6.48 3.67 44.95 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.206576 AAAGGATCCAACCTGCAGAC 57.793 50.000 17.39 0.00 40.49 3.51
20 21 1.067295 AAGGATCCAACCTGCAGACA 58.933 50.000 17.39 0.00 40.49 3.41
21 22 0.326264 AGGATCCAACCTGCAGACAC 59.674 55.000 17.39 0.00 39.01 3.67
22 23 0.036732 GGATCCAACCTGCAGACACA 59.963 55.000 17.39 0.00 0.00 3.72
23 24 1.160137 GATCCAACCTGCAGACACAC 58.840 55.000 17.39 0.00 0.00 3.82
24 25 0.473755 ATCCAACCTGCAGACACACA 59.526 50.000 17.39 0.00 0.00 3.72
25 26 0.473755 TCCAACCTGCAGACACACAT 59.526 50.000 17.39 0.00 0.00 3.21
26 27 1.696884 TCCAACCTGCAGACACACATA 59.303 47.619 17.39 0.00 0.00 2.29
27 28 1.806542 CCAACCTGCAGACACACATAC 59.193 52.381 17.39 0.00 0.00 2.39
28 29 1.460743 CAACCTGCAGACACACATACG 59.539 52.381 17.39 0.00 0.00 3.06
29 30 0.679505 ACCTGCAGACACACATACGT 59.320 50.000 17.39 0.00 0.00 3.57
30 31 1.890489 ACCTGCAGACACACATACGTA 59.110 47.619 17.39 0.00 0.00 3.57
31 32 2.094700 ACCTGCAGACACACATACGTAG 60.095 50.000 17.39 0.00 0.00 3.51
32 33 2.163613 CCTGCAGACACACATACGTAGA 59.836 50.000 17.39 0.00 0.00 2.59
33 34 3.172050 CTGCAGACACACATACGTAGAC 58.828 50.000 8.42 0.00 0.00 2.59
34 35 2.174764 GCAGACACACATACGTAGACG 58.825 52.381 0.08 0.00 46.33 4.18
35 36 2.159612 GCAGACACACATACGTAGACGA 60.160 50.000 9.41 0.00 43.02 4.20
36 37 3.668757 GCAGACACACATACGTAGACGAA 60.669 47.826 9.41 0.00 43.02 3.85
37 38 3.844657 CAGACACACATACGTAGACGAAC 59.155 47.826 9.41 0.00 43.02 3.95
39 40 2.480037 ACACACATACGTAGACGAACGA 59.520 45.455 9.41 2.05 45.68 3.85
40 41 3.125829 ACACACATACGTAGACGAACGAT 59.874 43.478 9.41 3.86 45.68 3.73
41 42 3.477446 CACACATACGTAGACGAACGATG 59.523 47.826 9.41 14.18 45.68 3.84
42 43 3.371898 ACACATACGTAGACGAACGATGA 59.628 43.478 9.41 2.82 45.68 2.92
43 44 3.717890 CACATACGTAGACGAACGATGAC 59.282 47.826 9.41 0.00 45.68 3.06
44 45 3.242543 ACATACGTAGACGAACGATGACC 60.243 47.826 9.41 0.00 45.68 4.02
45 46 0.095935 ACGTAGACGAACGATGACCG 59.904 55.000 9.41 0.00 45.68 4.79
46 47 0.588233 CGTAGACGAACGATGACCGG 60.588 60.000 0.00 0.00 45.68 5.28
47 48 0.729116 GTAGACGAACGATGACCGGA 59.271 55.000 9.46 0.00 43.93 5.14
48 49 1.332997 GTAGACGAACGATGACCGGAT 59.667 52.381 9.46 0.00 43.93 4.18
49 50 0.381089 AGACGAACGATGACCGGATC 59.619 55.000 9.46 0.00 43.93 3.36
50 51 0.594284 GACGAACGATGACCGGATCC 60.594 60.000 9.46 0.00 43.93 3.36
51 52 1.317431 ACGAACGATGACCGGATCCA 61.317 55.000 9.46 2.98 43.93 3.41
52 53 0.595053 CGAACGATGACCGGATCCAG 60.595 60.000 9.46 2.18 43.93 3.86
53 54 0.744874 GAACGATGACCGGATCCAGA 59.255 55.000 9.46 0.00 43.93 3.86
54 55 0.460311 AACGATGACCGGATCCAGAC 59.540 55.000 9.46 0.89 43.93 3.51
55 56 1.008424 CGATGACCGGATCCAGACG 60.008 63.158 9.46 9.40 33.91 4.18
76 77 0.958822 ATCCACCAAAGACAAACGCC 59.041 50.000 0.00 0.00 0.00 5.68
79 80 0.591170 CACCAAAGACAAACGCCGAT 59.409 50.000 0.00 0.00 0.00 4.18
81 82 0.179225 CCAAAGACAAACGCCGATCG 60.179 55.000 8.51 8.51 45.38 3.69
96 97 1.401670 CGATCGAATCCCACGAGATCC 60.402 57.143 10.26 0.00 42.81 3.36
99 100 1.301009 GAATCCCACGAGATCCGCC 60.301 63.158 0.00 0.00 43.32 6.13
126 127 1.828660 CCCTCCGGCGACAGTAGAT 60.829 63.158 9.30 0.00 0.00 1.98
135 136 0.249031 CGACAGTAGATGCATCGCCA 60.249 55.000 20.67 7.75 0.00 5.69
139 140 1.001746 CAGTAGATGCATCGCCAGGAT 59.998 52.381 20.67 4.37 35.09 3.24
154 155 2.524204 GGATGGGAGCTAGGCTGGG 61.524 68.421 0.00 0.00 39.88 4.45
166 167 1.512735 AGGCTGGGAGGACCTTATTC 58.487 55.000 0.00 0.00 41.11 1.75
168 169 0.106894 GCTGGGAGGACCTTATTCCG 59.893 60.000 0.00 0.00 41.04 4.30
176 177 4.434520 GAGGACCTTATTCCGTCTTCAAG 58.565 47.826 0.00 0.00 41.04 3.02
183 184 1.223187 TTCCGTCTTCAAGAAACCGC 58.777 50.000 0.00 0.00 0.00 5.68
184 185 0.601841 TCCGTCTTCAAGAAACCGCC 60.602 55.000 0.00 0.00 0.00 6.13
188 189 1.207593 CTTCAAGAAACCGCCGCTG 59.792 57.895 0.00 0.00 0.00 5.18
207 208 3.388308 CTGCCTCGTCTTCTTATCATGG 58.612 50.000 0.00 0.00 0.00 3.66
210 211 3.805108 GCCTCGTCTTCTTATCATGGCAT 60.805 47.826 0.00 0.00 37.91 4.40
212 213 5.167121 CCTCGTCTTCTTATCATGGCATAG 58.833 45.833 0.00 0.00 0.00 2.23
215 216 4.926238 CGTCTTCTTATCATGGCATAGACC 59.074 45.833 15.17 2.86 0.00 3.85
227 228 4.585879 TGGCATAGACCCTAACAAAACTC 58.414 43.478 0.00 0.00 0.00 3.01
252 253 2.180432 AACACCTAAAACCGGAGCTC 57.820 50.000 9.46 4.71 0.00 4.09
258 259 0.901580 TAAAACCGGAGCTCTCCCGT 60.902 55.000 9.46 7.16 46.96 5.28
260 261 3.881019 AACCGGAGCTCTCCCGTCA 62.881 63.158 9.46 0.00 46.96 4.35
261 262 3.068691 CCGGAGCTCTCCCGTCAA 61.069 66.667 14.64 0.00 46.96 3.18
291 292 3.047807 ATCCACCGCACCTCCATGG 62.048 63.158 4.97 4.97 42.93 3.66
313 314 2.879026 TCCAACGATCATAGGAGACGAG 59.121 50.000 12.27 5.75 33.27 4.18
314 315 2.030717 CCAACGATCATAGGAGACGAGG 60.031 54.545 12.27 9.76 33.27 4.63
350 351 0.456995 CCGACGAGAGGCAGAGAAAC 60.457 60.000 0.00 0.00 41.50 2.78
357 358 2.429250 GAGAGGCAGAGAAACCCTAGAC 59.571 54.545 0.00 0.00 0.00 2.59
379 380 6.085555 ACGAGAGTTCTTCATGTAAACAGA 57.914 37.500 0.00 0.00 46.40 3.41
411 412 6.925718 CGATGGATTAGAGTTAGATGCAAAGA 59.074 38.462 0.00 0.00 0.00 2.52
415 416 8.758829 TGGATTAGAGTTAGATGCAAAGAGTTA 58.241 33.333 0.00 0.00 0.00 2.24
430 431 5.991328 AAGAGTTACATCAATATGCGGTG 57.009 39.130 0.00 0.00 36.50 4.94
474 476 6.307031 TGTAAGTGTTATGTGCAAAATCGT 57.693 33.333 0.00 0.00 0.00 3.73
477 479 3.190535 AGTGTTATGTGCAAAATCGTCCC 59.809 43.478 0.00 0.00 0.00 4.46
483 485 2.752354 TGTGCAAAATCGTCCCCAATAG 59.248 45.455 0.00 0.00 0.00 1.73
497 499 3.368323 CCCCAATAGTTGATGGTTTGTGC 60.368 47.826 0.00 0.00 34.79 4.57
508 510 4.809958 TGATGGTTTGTGCAATTTTGTCTG 59.190 37.500 0.00 0.00 0.00 3.51
512 514 4.810491 GGTTTGTGCAATTTTGTCTGTCAT 59.190 37.500 0.00 0.00 0.00 3.06
515 517 7.336975 GTTTGTGCAATTTTGTCTGTCATTAC 58.663 34.615 0.00 0.00 0.00 1.89
521 523 4.782019 TTTTGTCTGTCATTACCATGCC 57.218 40.909 0.00 0.00 0.00 4.40
522 524 2.418368 TGTCTGTCATTACCATGCCC 57.582 50.000 0.00 0.00 0.00 5.36
532 534 2.396590 TACCATGCCCGAAAACTCTC 57.603 50.000 0.00 0.00 0.00 3.20
533 535 0.693049 ACCATGCCCGAAAACTCTCT 59.307 50.000 0.00 0.00 0.00 3.10
547 549 1.973515 ACTCTCTTGTGTGATGCCTCA 59.026 47.619 0.00 0.00 0.00 3.86
558 560 3.841643 GTGATGCCTCACTGAAAATTGG 58.158 45.455 14.17 0.00 46.84 3.16
565 567 4.807643 GCCTCACTGAAAATTGGTACTCCT 60.808 45.833 0.00 0.00 34.23 3.69
566 568 4.938226 CCTCACTGAAAATTGGTACTCCTC 59.062 45.833 0.00 0.00 34.23 3.71
568 570 5.551233 TCACTGAAAATTGGTACTCCTCTG 58.449 41.667 0.00 0.00 34.23 3.35
569 571 5.071788 TCACTGAAAATTGGTACTCCTCTGT 59.928 40.000 0.00 0.00 34.23 3.41
570 572 5.409826 CACTGAAAATTGGTACTCCTCTGTC 59.590 44.000 0.00 0.00 34.23 3.51
572 574 3.611766 AAATTGGTACTCCTCTGTCCG 57.388 47.619 0.00 0.00 34.23 4.79
581 584 3.442076 ACTCCTCTGTCCGGAATTACTT 58.558 45.455 5.23 0.00 0.00 2.24
584 587 3.056107 TCCTCTGTCCGGAATTACTTGTG 60.056 47.826 5.23 0.00 0.00 3.33
606 609 3.246226 GGCTCAAACTGTAGATATGCACG 59.754 47.826 0.00 0.00 0.00 5.34
613 616 3.196901 ACTGTAGATATGCACGTTTCCCA 59.803 43.478 0.00 0.00 0.00 4.37
615 618 3.936453 TGTAGATATGCACGTTTCCCAAC 59.064 43.478 0.00 0.00 0.00 3.77
616 619 2.365582 AGATATGCACGTTTCCCAACC 58.634 47.619 0.00 0.00 0.00 3.77
631 634 5.464588 TCCCAACCCAAAATATCTGATCA 57.535 39.130 0.00 0.00 0.00 2.92
749 760 1.745890 CAGGTCAGGTCACGTCCAA 59.254 57.895 0.00 0.00 0.00 3.53
904 915 3.118454 CCGCGCCTCGTCAAATGT 61.118 61.111 0.00 0.00 36.19 2.71
995 1006 3.419759 CACCTGCAACGCGGTACC 61.420 66.667 12.47 0.16 34.79 3.34
1154 1173 0.790866 GACACGCAGGTACGTACGTC 60.791 60.000 26.53 15.93 46.34 4.34
1162 1181 0.590732 GGTACGTACGTCCATGCGAG 60.591 60.000 26.53 0.00 35.59 5.03
1199 1225 3.544684 TGCTCAAACATGACACTGTCTT 58.455 40.909 10.54 1.31 33.15 3.01
1214 1240 1.677576 TGTCTTTTTGGCTCTGCTGTG 59.322 47.619 0.00 0.00 0.00 3.66
1226 1252 2.358003 GCTGTGCAGGCTCTCGTT 60.358 61.111 4.55 0.00 0.00 3.85
1455 1485 1.515521 GAGTCTTGGTTTGTGCCCCG 61.516 60.000 0.00 0.00 0.00 5.73
1652 1684 0.999406 CCGCAACGACAAGGTATGAG 59.001 55.000 0.00 0.00 0.00 2.90
1653 1685 1.403647 CCGCAACGACAAGGTATGAGA 60.404 52.381 0.00 0.00 0.00 3.27
1654 1686 2.333926 CGCAACGACAAGGTATGAGAA 58.666 47.619 0.00 0.00 0.00 2.87
1655 1687 2.930040 CGCAACGACAAGGTATGAGAAT 59.070 45.455 0.00 0.00 0.00 2.40
1656 1688 3.242091 CGCAACGACAAGGTATGAGAATG 60.242 47.826 0.00 0.00 0.00 2.67
1657 1689 3.932710 GCAACGACAAGGTATGAGAATGA 59.067 43.478 0.00 0.00 0.00 2.57
1658 1690 4.391830 GCAACGACAAGGTATGAGAATGAA 59.608 41.667 0.00 0.00 0.00 2.57
1659 1691 5.065218 GCAACGACAAGGTATGAGAATGAAT 59.935 40.000 0.00 0.00 0.00 2.57
1660 1692 6.481134 CAACGACAAGGTATGAGAATGAATG 58.519 40.000 0.00 0.00 0.00 2.67
1661 1693 5.734720 ACGACAAGGTATGAGAATGAATGT 58.265 37.500 0.00 0.00 0.00 2.71
1662 1694 6.173339 ACGACAAGGTATGAGAATGAATGTT 58.827 36.000 0.00 0.00 0.00 2.71
1663 1695 6.092670 ACGACAAGGTATGAGAATGAATGTTG 59.907 38.462 0.00 0.00 0.00 3.33
1664 1696 6.313658 CGACAAGGTATGAGAATGAATGTTGA 59.686 38.462 0.00 0.00 0.00 3.18
1665 1697 7.148423 CGACAAGGTATGAGAATGAATGTTGAA 60.148 37.037 0.00 0.00 0.00 2.69
1666 1698 7.820648 ACAAGGTATGAGAATGAATGTTGAAC 58.179 34.615 0.00 0.00 0.00 3.18
1667 1699 7.667219 ACAAGGTATGAGAATGAATGTTGAACT 59.333 33.333 0.00 0.00 0.00 3.01
1668 1700 7.856145 AGGTATGAGAATGAATGTTGAACTC 57.144 36.000 0.00 0.00 0.00 3.01
1669 1701 7.397221 AGGTATGAGAATGAATGTTGAACTCA 58.603 34.615 0.00 0.00 37.33 3.41
1670 1702 7.335422 AGGTATGAGAATGAATGTTGAACTCAC 59.665 37.037 0.00 0.00 36.11 3.51
1671 1703 7.335422 GGTATGAGAATGAATGTTGAACTCACT 59.665 37.037 0.00 0.00 36.11 3.41
1672 1704 9.371136 GTATGAGAATGAATGTTGAACTCACTA 57.629 33.333 0.00 0.00 36.11 2.74
1673 1705 7.658179 TGAGAATGAATGTTGAACTCACTAC 57.342 36.000 0.00 0.00 0.00 2.73
1740 1772 7.054124 ACTGAAGACTGATTTGTTTTACTCCA 58.946 34.615 0.00 0.00 0.00 3.86
1746 1778 8.137437 AGACTGATTTGTTTTACTCCAATTGTG 58.863 33.333 4.43 0.00 0.00 3.33
1773 1805 3.136123 CATTGCACAGCCCCGGAG 61.136 66.667 0.73 0.00 0.00 4.63
1794 1826 1.650528 CTCCCAAGGTGAACTCCTCT 58.349 55.000 0.00 0.00 36.74 3.69
1795 1827 1.277557 CTCCCAAGGTGAACTCCTCTG 59.722 57.143 0.00 0.00 36.74 3.35
1796 1828 1.059913 CCCAAGGTGAACTCCTCTGT 58.940 55.000 0.00 0.00 36.74 3.41
1797 1829 1.002544 CCCAAGGTGAACTCCTCTGTC 59.997 57.143 0.00 0.00 36.74 3.51
1798 1830 1.002544 CCAAGGTGAACTCCTCTGTCC 59.997 57.143 0.00 0.00 36.74 4.02
1799 1831 1.002544 CAAGGTGAACTCCTCTGTCCC 59.997 57.143 0.00 0.00 36.74 4.46
1800 1832 0.900647 AGGTGAACTCCTCTGTCCCG 60.901 60.000 0.00 0.00 31.32 5.14
1801 1833 1.186267 GGTGAACTCCTCTGTCCCGT 61.186 60.000 0.00 0.00 0.00 5.28
1802 1834 0.680061 GTGAACTCCTCTGTCCCGTT 59.320 55.000 0.00 0.00 0.00 4.44
1803 1835 1.070289 GTGAACTCCTCTGTCCCGTTT 59.930 52.381 0.00 0.00 0.00 3.60
1804 1836 1.070134 TGAACTCCTCTGTCCCGTTTG 59.930 52.381 0.00 0.00 0.00 2.93
1805 1837 1.343465 GAACTCCTCTGTCCCGTTTGA 59.657 52.381 0.00 0.00 0.00 2.69
1806 1838 0.680061 ACTCCTCTGTCCCGTTTGAC 59.320 55.000 0.00 0.00 35.77 3.18
1807 1839 0.969894 CTCCTCTGTCCCGTTTGACT 59.030 55.000 0.00 0.00 36.21 3.41
1808 1840 2.168496 CTCCTCTGTCCCGTTTGACTA 58.832 52.381 0.00 0.00 36.21 2.59
1809 1841 1.891150 TCCTCTGTCCCGTTTGACTAC 59.109 52.381 0.00 0.00 36.21 2.73
1810 1842 1.893801 CCTCTGTCCCGTTTGACTACT 59.106 52.381 0.00 0.00 36.21 2.57
1811 1843 2.094649 CCTCTGTCCCGTTTGACTACTC 60.095 54.545 0.00 0.00 36.21 2.59
1812 1844 2.820787 CTCTGTCCCGTTTGACTACTCT 59.179 50.000 0.00 0.00 36.21 3.24
1813 1845 2.557056 TCTGTCCCGTTTGACTACTCTG 59.443 50.000 0.00 0.00 36.21 3.35
1814 1846 2.557056 CTGTCCCGTTTGACTACTCTGA 59.443 50.000 0.00 0.00 36.21 3.27
1815 1847 2.960384 TGTCCCGTTTGACTACTCTGAA 59.040 45.455 0.00 0.00 36.21 3.02
1819 1851 4.039973 TCCCGTTTGACTACTCTGAATGTT 59.960 41.667 0.00 0.00 0.00 2.71
1820 1852 4.755123 CCCGTTTGACTACTCTGAATGTTT 59.245 41.667 0.00 0.00 0.00 2.83
1821 1853 5.334105 CCCGTTTGACTACTCTGAATGTTTG 60.334 44.000 0.00 0.00 0.00 2.93
1824 1856 6.366630 GTTTGACTACTCTGAATGTTTGCTC 58.633 40.000 0.00 0.00 0.00 4.26
1827 1859 4.573900 ACTACTCTGAATGTTTGCTCCAG 58.426 43.478 0.00 0.00 0.00 3.86
1829 1861 3.144506 ACTCTGAATGTTTGCTCCAGTG 58.855 45.455 0.00 0.00 0.00 3.66
1830 1862 2.486982 CTCTGAATGTTTGCTCCAGTGG 59.513 50.000 1.40 1.40 0.00 4.00
1834 1866 2.134789 ATGTTTGCTCCAGTGGGATC 57.865 50.000 9.92 0.00 43.91 3.36
1835 1867 0.770499 TGTTTGCTCCAGTGGGATCA 59.230 50.000 9.92 1.99 43.91 2.92
1836 1868 1.271543 TGTTTGCTCCAGTGGGATCAG 60.272 52.381 9.92 0.00 43.91 2.90
1837 1869 0.329261 TTTGCTCCAGTGGGATCAGG 59.671 55.000 9.92 0.00 43.91 3.86
1839 1871 2.750657 GCTCCAGTGGGATCAGGGG 61.751 68.421 9.92 0.00 43.91 4.79
1840 1872 1.003442 CTCCAGTGGGATCAGGGGA 59.997 63.158 9.92 0.00 43.91 4.81
1849 1881 2.091720 TGGGATCAGGGGACATCATTTG 60.092 50.000 0.00 0.00 0.00 2.32
1853 1885 1.358787 TCAGGGGACATCATTTGCCTT 59.641 47.619 0.00 0.00 0.00 4.35
1854 1886 2.181975 CAGGGGACATCATTTGCCTTT 58.818 47.619 0.00 0.00 0.00 3.11
1855 1887 2.568509 CAGGGGACATCATTTGCCTTTT 59.431 45.455 0.00 0.00 0.00 2.27
1856 1888 2.833943 AGGGGACATCATTTGCCTTTTC 59.166 45.455 0.00 0.00 0.00 2.29
1857 1889 2.566724 GGGGACATCATTTGCCTTTTCA 59.433 45.455 0.00 0.00 0.00 2.69
1859 1891 4.323715 GGGGACATCATTTGCCTTTTCATT 60.324 41.667 0.00 0.00 0.00 2.57
1861 1893 6.405538 GGGACATCATTTGCCTTTTCATTTA 58.594 36.000 0.00 0.00 0.00 1.40
1864 1896 7.765360 GGACATCATTTGCCTTTTCATTTATCA 59.235 33.333 0.00 0.00 0.00 2.15
1867 1899 9.158233 CATCATTTGCCTTTTCATTTATCACTT 57.842 29.630 0.00 0.00 0.00 3.16
1869 1901 9.558396 TCATTTGCCTTTTCATTTATCACTTTT 57.442 25.926 0.00 0.00 0.00 2.27
1892 1948 1.203052 CTTTGTTCTTGGCGGATGCAT 59.797 47.619 0.00 0.00 45.35 3.96
2189 2306 6.479884 ACTGAATCTCTTATTTTGAGCAGGT 58.520 36.000 0.00 0.00 0.00 4.00
2333 2455 1.092348 TGTCTGCTCATTGCTCATGC 58.908 50.000 0.00 0.00 43.37 4.06
2521 2679 5.678132 TCATCATGAACTTGTGTTGTCTG 57.322 39.130 0.00 0.00 36.39 3.51
2522 2680 4.516321 TCATCATGAACTTGTGTTGTCTGG 59.484 41.667 0.00 0.00 36.39 3.86
2666 2829 1.448922 GGTACGATCTCTGCTCGCCT 61.449 60.000 0.00 0.00 39.71 5.52
2670 2833 1.299014 GATCTCTGCTCGCCTGACG 60.299 63.158 0.00 0.00 45.62 4.35
2699 2862 1.640428 GCCGATCGATGTCTGAAACA 58.360 50.000 18.66 0.00 43.51 2.83
2700 2863 1.999735 GCCGATCGATGTCTGAAACAA 59.000 47.619 18.66 0.00 42.37 2.83
2701 2864 2.415168 GCCGATCGATGTCTGAAACAAA 59.585 45.455 18.66 0.00 42.37 2.83
2702 2865 3.725010 GCCGATCGATGTCTGAAACAAAC 60.725 47.826 18.66 0.00 42.37 2.93
2703 2866 3.679980 CCGATCGATGTCTGAAACAAACT 59.320 43.478 18.66 0.00 42.37 2.66
2704 2867 4.152402 CCGATCGATGTCTGAAACAAACTT 59.848 41.667 18.66 0.00 42.37 2.66
2705 2868 5.334105 CCGATCGATGTCTGAAACAAACTTT 60.334 40.000 18.66 0.00 42.37 2.66
2706 2869 5.561499 CGATCGATGTCTGAAACAAACTTTG 59.439 40.000 10.26 0.00 42.37 2.77
2825 2988 4.452733 CGGGCGGTGACCTTCTCC 62.453 72.222 0.00 0.00 0.00 3.71
2870 3033 1.300697 GGTGTCGCTCAAGGACGTT 60.301 57.895 0.00 0.00 37.22 3.99
3058 3295 0.798776 GCTCCGGCATGAATAATCCG 59.201 55.000 0.00 0.00 41.41 4.18
3062 3299 1.875963 GGCATGAATAATCCGGCCG 59.124 57.895 21.04 21.04 35.09 6.13
3071 3308 4.202233 TGAATAATCCGGCCGTGTATTGTA 60.202 41.667 26.12 11.85 0.00 2.41
3073 3310 1.117150 ATCCGGCCGTGTATTGTACT 58.883 50.000 26.12 0.00 0.00 2.73
3074 3311 0.896923 TCCGGCCGTGTATTGTACTT 59.103 50.000 26.12 0.00 0.00 2.24
3075 3312 1.275856 TCCGGCCGTGTATTGTACTTT 59.724 47.619 26.12 0.00 0.00 2.66
3076 3313 1.395608 CCGGCCGTGTATTGTACTTTG 59.604 52.381 26.12 0.00 0.00 2.77
3077 3314 2.070783 CGGCCGTGTATTGTACTTTGT 58.929 47.619 19.50 0.00 0.00 2.83
3078 3315 3.252400 CGGCCGTGTATTGTACTTTGTA 58.748 45.455 19.50 0.00 0.00 2.41
3080 3317 4.330620 CGGCCGTGTATTGTACTTTGTATT 59.669 41.667 19.50 0.00 0.00 1.89
3081 3318 5.519566 CGGCCGTGTATTGTACTTTGTATTA 59.480 40.000 19.50 0.00 0.00 0.98
3082 3319 6.508404 CGGCCGTGTATTGTACTTTGTATTAC 60.508 42.308 19.50 0.00 0.00 1.89
3127 3364 2.715005 CGCCGTACGTATTCGGGA 59.285 61.111 21.79 0.00 45.85 5.14
3128 3365 1.655350 CGCCGTACGTATTCGGGAC 60.655 63.158 21.79 8.79 45.85 4.46
3131 3368 1.016627 CCGTACGTATTCGGGACTGA 58.983 55.000 15.21 0.00 42.61 3.41
3132 3369 1.268234 CCGTACGTATTCGGGACTGAC 60.268 57.143 15.21 0.00 42.61 3.51
3133 3370 1.667724 CGTACGTATTCGGGACTGACT 59.332 52.381 7.22 0.00 41.85 3.41
3134 3371 2.866156 CGTACGTATTCGGGACTGACTA 59.134 50.000 7.22 0.00 41.85 2.59
3135 3372 3.496130 CGTACGTATTCGGGACTGACTAT 59.504 47.826 7.22 0.00 41.85 2.12
3136 3373 4.686091 CGTACGTATTCGGGACTGACTATA 59.314 45.833 7.22 0.00 41.85 1.31
3137 3374 5.164012 CGTACGTATTCGGGACTGACTATAG 60.164 48.000 7.22 0.00 41.85 1.31
3138 3375 4.070716 ACGTATTCGGGACTGACTATAGG 58.929 47.826 4.43 0.00 41.85 2.57
3141 3378 8.593134 ACGTATTCGGGACTGACTATAGGTCA 62.593 46.154 4.43 4.98 45.54 4.02
3165 3402 6.636850 CAGTCGACTGAAAAAGTAAATTTGGG 59.363 38.462 36.73 6.10 46.59 4.12
3166 3403 6.320418 AGTCGACTGAAAAAGTAAATTTGGGT 59.680 34.615 19.30 0.00 40.07 4.51
3167 3404 6.635641 GTCGACTGAAAAAGTAAATTTGGGTC 59.364 38.462 8.70 0.00 40.07 4.46
3168 3405 6.319152 TCGACTGAAAAAGTAAATTTGGGTCA 59.681 34.615 0.00 0.00 40.07 4.02
3169 3406 6.636850 CGACTGAAAAAGTAAATTTGGGTCAG 59.363 38.462 0.00 7.55 40.07 3.51
3170 3407 7.418337 ACTGAAAAAGTAAATTTGGGTCAGT 57.582 32.000 0.00 8.11 40.25 3.41
3171 3408 7.489160 ACTGAAAAAGTAAATTTGGGTCAGTC 58.511 34.615 0.00 0.00 40.65 3.51
3172 3409 7.123547 ACTGAAAAAGTAAATTTGGGTCAGTCA 59.876 33.333 0.00 0.00 40.65 3.41
3173 3410 7.841956 TGAAAAAGTAAATTTGGGTCAGTCAA 58.158 30.769 0.00 0.00 0.00 3.18
3174 3411 7.762159 TGAAAAAGTAAATTTGGGTCAGTCAAC 59.238 33.333 0.00 0.00 0.00 3.18
3175 3412 7.418337 AAAAGTAAATTTGGGTCAGTCAACT 57.582 32.000 0.00 0.00 0.00 3.16
3185 3422 3.989104 CAGTCAACTGACCCGAACT 57.011 52.632 4.05 0.00 46.59 3.01
3186 3423 1.784525 CAGTCAACTGACCCGAACTC 58.215 55.000 4.05 0.00 46.59 3.01
3187 3424 0.314302 AGTCAACTGACCCGAACTCG 59.686 55.000 6.23 0.00 45.85 4.18
3188 3425 0.031721 GTCAACTGACCCGAACTCGT 59.968 55.000 0.00 0.00 39.07 4.18
3189 3426 0.748450 TCAACTGACCCGAACTCGTT 59.252 50.000 0.00 0.00 37.74 3.85
3190 3427 1.137479 TCAACTGACCCGAACTCGTTT 59.863 47.619 0.00 0.00 37.74 3.60
3193 3430 1.269621 ACTGACCCGAACTCGTTTCAG 60.270 52.381 18.54 18.54 44.81 3.02
3194 3431 0.599204 TGACCCGAACTCGTTTCAGC 60.599 55.000 0.00 0.00 37.74 4.26
3197 3434 1.342174 ACCCGAACTCGTTTCAGCTAA 59.658 47.619 0.00 0.00 37.74 3.09
3200 3437 3.366679 CCCGAACTCGTTTCAGCTAACTA 60.367 47.826 0.00 0.00 37.74 2.24
3202 3439 3.852536 CGAACTCGTTTCAGCTAACTAGG 59.147 47.826 6.03 0.00 33.24 3.02
3205 3442 1.814394 TCGTTTCAGCTAACTAGGCGA 59.186 47.619 0.00 0.00 34.52 5.54
3206 3443 2.159421 TCGTTTCAGCTAACTAGGCGAG 60.159 50.000 0.00 0.00 34.52 5.03
3207 3444 1.927838 GTTTCAGCTAACTAGGCGAGC 59.072 52.381 4.99 4.99 36.42 5.03
3209 3446 0.741326 TCAGCTAACTAGGCGAGCAG 59.259 55.000 13.32 7.07 38.73 4.24
3210 3447 0.249238 CAGCTAACTAGGCGAGCAGG 60.249 60.000 13.32 3.82 38.73 4.85
3227 3464 4.626081 GCCTGCCGGTGTCACACT 62.626 66.667 8.12 0.00 34.40 3.55
3228 3465 2.357517 CCTGCCGGTGTCACACTC 60.358 66.667 8.12 0.00 34.40 3.51
3229 3466 2.357517 CTGCCGGTGTCACACTCC 60.358 66.667 8.12 0.00 34.40 3.85
3240 3477 6.730960 GGTGTCACACTCCGAAATTAATTA 57.269 37.500 8.12 0.00 34.40 1.40
3241 3478 6.772078 GGTGTCACACTCCGAAATTAATTAG 58.228 40.000 8.12 0.00 34.40 1.73
3242 3479 6.248631 GTGTCACACTCCGAAATTAATTAGC 58.751 40.000 0.00 0.00 0.00 3.09
3243 3480 6.092259 GTGTCACACTCCGAAATTAATTAGCT 59.908 38.462 0.00 0.00 0.00 3.32
3244 3481 6.653320 TGTCACACTCCGAAATTAATTAGCTT 59.347 34.615 0.01 0.00 0.00 3.74
3245 3482 7.174253 TGTCACACTCCGAAATTAATTAGCTTT 59.826 33.333 0.01 0.00 0.00 3.51
3247 3484 6.682863 CACACTCCGAAATTAATTAGCTTTCG 59.317 38.462 24.07 24.07 46.52 3.46
3264 3501 1.140161 CGAGGAATTCGTACGGGCA 59.860 57.895 16.52 0.00 44.27 5.36
3265 3502 0.870307 CGAGGAATTCGTACGGGCAG 60.870 60.000 16.52 0.00 44.27 4.85
3266 3503 1.152383 GAGGAATTCGTACGGGCAGC 61.152 60.000 16.52 1.62 0.00 5.25
3268 3505 3.151673 GAATTCGTACGGGCAGCGC 62.152 63.158 16.52 0.00 0.00 5.92
3269 3506 3.659089 AATTCGTACGGGCAGCGCT 62.659 57.895 16.52 2.64 0.00 5.92
3284 3521 2.477845 GCTGACGAGTGCACATGC 59.522 61.111 21.04 9.52 42.50 4.06
3295 3532 2.956469 GCACATGCACAAACAACGT 58.044 47.368 0.00 0.00 41.59 3.99
3296 3533 2.112475 GCACATGCACAAACAACGTA 57.888 45.000 0.00 0.00 41.59 3.57
3298 3535 2.380660 CACATGCACAAACAACGTACC 58.619 47.619 0.00 0.00 0.00 3.34
3299 3536 2.032799 CACATGCACAAACAACGTACCT 59.967 45.455 0.00 0.00 0.00 3.08
3300 3537 3.248841 CACATGCACAAACAACGTACCTA 59.751 43.478 0.00 0.00 0.00 3.08
3301 3538 3.249080 ACATGCACAAACAACGTACCTAC 59.751 43.478 0.00 0.00 0.00 3.18
3302 3539 2.902523 TGCACAAACAACGTACCTACA 58.097 42.857 0.00 0.00 0.00 2.74
3303 3540 3.468770 TGCACAAACAACGTACCTACAT 58.531 40.909 0.00 0.00 0.00 2.29
3305 3542 4.448395 TGCACAAACAACGTACCTACATAC 59.552 41.667 0.00 0.00 0.00 2.39
3316 3553 5.389778 CGTACCTACATACGTACAACAACA 58.610 41.667 0.00 0.00 42.37 3.33
3317 3554 5.283717 CGTACCTACATACGTACAACAACAC 59.716 44.000 0.00 0.00 42.37 3.32
3318 3555 5.458041 ACCTACATACGTACAACAACACT 57.542 39.130 0.00 0.00 0.00 3.55
3319 3556 5.224888 ACCTACATACGTACAACAACACTG 58.775 41.667 0.00 0.00 0.00 3.66
3320 3557 4.090930 CCTACATACGTACAACAACACTGC 59.909 45.833 0.00 0.00 0.00 4.40
3321 3558 3.724374 ACATACGTACAACAACACTGCT 58.276 40.909 0.00 0.00 0.00 4.24
3322 3559 4.873817 ACATACGTACAACAACACTGCTA 58.126 39.130 0.00 0.00 0.00 3.49
3323 3560 4.921515 ACATACGTACAACAACACTGCTAG 59.078 41.667 0.00 0.00 0.00 3.42
3325 3562 2.223971 ACGTACAACAACACTGCTAGCT 60.224 45.455 17.23 0.00 0.00 3.32
3327 3564 3.608506 CGTACAACAACACTGCTAGCTAG 59.391 47.826 16.84 16.84 0.00 3.42
3340 3577 4.864704 GCTAGCTAGCTACATTCCTCTT 57.135 45.455 33.71 0.00 45.62 2.85
3342 3579 4.522789 GCTAGCTAGCTACATTCCTCTTCT 59.477 45.833 33.71 0.00 45.62 2.85
3345 3582 4.959210 AGCTAGCTACATTCCTCTTCTTCA 59.041 41.667 17.69 0.00 0.00 3.02
3346 3583 5.602145 AGCTAGCTACATTCCTCTTCTTCAT 59.398 40.000 17.69 0.00 0.00 2.57
3348 3585 6.765512 GCTAGCTACATTCCTCTTCTTCATTT 59.234 38.462 7.70 0.00 0.00 2.32
3349 3586 7.281999 GCTAGCTACATTCCTCTTCTTCATTTT 59.718 37.037 7.70 0.00 0.00 1.82
3400 4339 4.672587 TGGATGCATCTCAAGTACTACC 57.327 45.455 25.28 6.19 0.00 3.18
3402 4341 4.342378 TGGATGCATCTCAAGTACTACCTC 59.658 45.833 25.28 4.91 0.00 3.85
3403 4342 4.262249 GGATGCATCTCAAGTACTACCTCC 60.262 50.000 25.28 1.21 0.00 4.30
3405 4344 2.950309 GCATCTCAAGTACTACCTCCGA 59.050 50.000 0.00 0.00 0.00 4.55
3407 4346 4.320641 GCATCTCAAGTACTACCTCCGATC 60.321 50.000 0.00 0.00 0.00 3.69
3408 4347 3.818180 TCTCAAGTACTACCTCCGATCC 58.182 50.000 0.00 0.00 0.00 3.36
3410 4349 4.079901 TCTCAAGTACTACCTCCGATCCTT 60.080 45.833 0.00 0.00 0.00 3.36
3411 4350 4.607239 TCAAGTACTACCTCCGATCCTTT 58.393 43.478 0.00 0.00 0.00 3.11
3413 4352 5.591877 TCAAGTACTACCTCCGATCCTTTAC 59.408 44.000 0.00 0.00 0.00 2.01
3414 4353 4.133078 AGTACTACCTCCGATCCTTTACG 58.867 47.826 0.00 0.00 0.00 3.18
3415 4354 1.680207 ACTACCTCCGATCCTTTACGC 59.320 52.381 0.00 0.00 0.00 4.42
3416 4355 1.679680 CTACCTCCGATCCTTTACGCA 59.320 52.381 0.00 0.00 0.00 5.24
3417 4356 0.899720 ACCTCCGATCCTTTACGCAA 59.100 50.000 0.00 0.00 0.00 4.85
3432 4371 8.168681 CCTTTACGCAAGGTGTATTATTTTTG 57.831 34.615 5.91 0.00 46.72 2.44
3437 4376 5.005586 CGCAAGGTGTATTATTTTTGGCATG 59.994 40.000 0.00 0.00 0.00 4.06
3438 4377 5.294060 GCAAGGTGTATTATTTTTGGCATGG 59.706 40.000 0.00 0.00 0.00 3.66
3439 4378 5.022282 AGGTGTATTATTTTTGGCATGGC 57.978 39.130 13.29 13.29 0.00 4.40
3456 4395 4.095590 CCACCAAGGCACGGAATT 57.904 55.556 0.00 0.00 0.00 2.17
3457 4396 3.257935 CCACCAAGGCACGGAATTA 57.742 52.632 0.00 0.00 0.00 1.40
3460 4399 2.878406 CCACCAAGGCACGGAATTATAG 59.122 50.000 0.00 0.00 0.00 1.31
3462 4401 3.560068 CACCAAGGCACGGAATTATAGAC 59.440 47.826 0.00 0.00 0.00 2.59
3464 4403 4.141482 ACCAAGGCACGGAATTATAGACAT 60.141 41.667 0.00 0.00 0.00 3.06
3465 4404 4.214119 CCAAGGCACGGAATTATAGACATG 59.786 45.833 0.00 0.00 0.00 3.21
3467 4406 5.036117 AGGCACGGAATTATAGACATGTT 57.964 39.130 0.00 0.00 0.00 2.71
3468 4407 6.169557 AGGCACGGAATTATAGACATGTTA 57.830 37.500 0.00 0.00 0.00 2.41
3469 4408 6.223852 AGGCACGGAATTATAGACATGTTAG 58.776 40.000 0.00 0.00 0.00 2.34
3471 4410 6.220930 GCACGGAATTATAGACATGTTAGGA 58.779 40.000 0.00 0.00 0.00 2.94
3472 4411 6.145696 GCACGGAATTATAGACATGTTAGGAC 59.854 42.308 0.00 0.00 0.00 3.85
3473 4412 6.362551 CACGGAATTATAGACATGTTAGGACG 59.637 42.308 0.00 0.00 0.00 4.79
3474 4413 6.263842 ACGGAATTATAGACATGTTAGGACGA 59.736 38.462 0.00 0.00 0.00 4.20
3475 4414 7.143340 CGGAATTATAGACATGTTAGGACGAA 58.857 38.462 0.00 0.00 0.00 3.85
3476 4415 7.650504 CGGAATTATAGACATGTTAGGACGAAA 59.349 37.037 0.00 0.00 0.00 3.46
3483 4422 6.698380 AGACATGTTAGGACGAAATTACACT 58.302 36.000 0.00 0.00 0.00 3.55
3484 4423 7.159372 AGACATGTTAGGACGAAATTACACTT 58.841 34.615 0.00 0.00 0.00 3.16
3485 4424 7.117812 AGACATGTTAGGACGAAATTACACTTG 59.882 37.037 0.00 0.00 0.00 3.16
3487 4426 4.453136 TGTTAGGACGAAATTACACTTGGC 59.547 41.667 0.00 0.00 0.00 4.52
3488 4427 3.134574 AGGACGAAATTACACTTGGCA 57.865 42.857 0.00 0.00 0.00 4.92
3490 4429 3.886505 AGGACGAAATTACACTTGGCAAA 59.113 39.130 0.00 0.00 0.00 3.68
3492 4431 5.010617 AGGACGAAATTACACTTGGCAAATT 59.989 36.000 0.00 0.00 0.00 1.82
3494 4433 6.346518 GGACGAAATTACACTTGGCAAATTTG 60.347 38.462 14.03 14.03 33.03 2.32
3495 4434 5.465056 ACGAAATTACACTTGGCAAATTTGG 59.535 36.000 19.47 11.40 33.03 3.28
3496 4435 5.694006 CGAAATTACACTTGGCAAATTTGGA 59.306 36.000 19.47 0.00 33.03 3.53
3498 4437 7.095271 CGAAATTACACTTGGCAAATTTGGATT 60.095 33.333 19.47 6.45 33.03 3.01
3499 4438 9.213799 GAAATTACACTTGGCAAATTTGGATTA 57.786 29.630 19.47 0.00 33.03 1.75
3500 4439 8.776376 AATTACACTTGGCAAATTTGGATTAG 57.224 30.769 19.47 0.00 0.00 1.73
3501 4440 5.806654 ACACTTGGCAAATTTGGATTAGT 57.193 34.783 19.47 2.91 0.00 2.24
3502 4441 5.783111 ACACTTGGCAAATTTGGATTAGTC 58.217 37.500 19.47 1.06 0.00 2.59
3507 4446 4.155826 TGGCAAATTTGGATTAGTCGACTG 59.844 41.667 28.12 8.42 0.00 3.51
3509 4448 5.324697 GCAAATTTGGATTAGTCGACTGAC 58.675 41.667 28.12 17.16 45.86 3.51
3522 4461 5.403897 GTCGACTGACTCAAATGAAAACA 57.596 39.130 8.70 0.00 42.08 2.83
3523 4462 5.990408 GTCGACTGACTCAAATGAAAACAT 58.010 37.500 8.70 0.00 42.08 2.71
3524 4463 7.117241 GTCGACTGACTCAAATGAAAACATA 57.883 36.000 8.70 0.00 42.08 2.29
3525 4464 7.743104 GTCGACTGACTCAAATGAAAACATAT 58.257 34.615 8.70 0.00 42.08 1.78
3526 4465 8.869897 GTCGACTGACTCAAATGAAAACATATA 58.130 33.333 8.70 0.00 42.08 0.86
3528 4467 8.873830 CGACTGACTCAAATGAAAACATATAGT 58.126 33.333 0.00 0.00 0.00 2.12
3529 4468 9.979270 GACTGACTCAAATGAAAACATATAGTG 57.021 33.333 0.00 0.00 0.00 2.74
3562 4501 9.891828 TCCATTCGATTTACATATAAATTGTGC 57.108 29.630 4.08 0.00 40.42 4.57
3642 6632 9.950680 TCTAAGAAAGAATGAATGTGACAAAAC 57.049 29.630 0.00 0.00 0.00 2.43
3645 6635 9.657419 AAGAAAGAATGAATGTGACAAAACTTT 57.343 25.926 0.00 0.00 0.00 2.66
3668 6658 4.418013 AAAAACTTGCACAAAACCTTGC 57.582 36.364 0.00 0.00 39.33 4.01
3669 6659 2.758736 AACTTGCACAAAACCTTGCA 57.241 40.000 0.00 0.00 46.93 4.08
3674 6664 3.876274 TGCACAAAACCTTGCACTAAA 57.124 38.095 0.00 0.00 43.79 1.85
3676 6666 4.764172 TGCACAAAACCTTGCACTAAAAT 58.236 34.783 0.00 0.00 43.79 1.82
3677 6667 5.181748 TGCACAAAACCTTGCACTAAAATT 58.818 33.333 0.00 0.00 43.79 1.82
3678 6668 5.064452 TGCACAAAACCTTGCACTAAAATTG 59.936 36.000 0.00 0.00 43.79 2.32
3679 6669 5.500825 CACAAAACCTTGCACTAAAATTGC 58.499 37.500 0.00 0.00 40.63 3.56
3688 6678 4.764172 TGCACTAAAATTGCACCTTTTGT 58.236 34.783 13.76 8.16 45.06 2.83
3690 6680 5.982516 TGCACTAAAATTGCACCTTTTGTAG 59.017 36.000 13.76 8.38 45.06 2.74
3692 6682 7.142680 GCACTAAAATTGCACCTTTTGTAGTA 58.857 34.615 13.76 0.00 39.93 1.82
3693 6683 7.812669 GCACTAAAATTGCACCTTTTGTAGTAT 59.187 33.333 13.76 0.00 39.93 2.12
3694 6684 9.128107 CACTAAAATTGCACCTTTTGTAGTATG 57.872 33.333 13.76 0.87 0.00 2.39
3695 6685 7.812669 ACTAAAATTGCACCTTTTGTAGTATGC 59.187 33.333 13.76 0.00 35.60 3.14
3730 6720 8.895932 ATTACAATAGTTCAAATTTCGCACTC 57.104 30.769 0.00 0.00 0.00 3.51
3731 6721 6.560253 ACAATAGTTCAAATTTCGCACTCT 57.440 33.333 0.00 0.00 0.00 3.24
3732 6722 7.667043 ACAATAGTTCAAATTTCGCACTCTA 57.333 32.000 0.00 0.00 0.00 2.43
3733 6723 7.743104 ACAATAGTTCAAATTTCGCACTCTAG 58.257 34.615 0.00 0.00 0.00 2.43
3734 6724 7.387948 ACAATAGTTCAAATTTCGCACTCTAGT 59.612 33.333 0.00 0.00 0.00 2.57
3736 6726 9.601217 AATAGTTCAAATTTCGCACTCTAGTAT 57.399 29.630 0.00 0.00 0.00 2.12
3737 6727 7.907214 AGTTCAAATTTCGCACTCTAGTATT 57.093 32.000 0.00 0.00 0.00 1.89
3739 6729 9.601217 AGTTCAAATTTCGCACTCTAGTATTAT 57.399 29.630 0.00 0.00 0.00 1.28
3746 6736 8.936070 TTTCGCACTCTAGTATTATTTAAGCA 57.064 30.769 0.00 0.00 0.00 3.91
3748 6738 7.485810 TCGCACTCTAGTATTATTTAAGCACA 58.514 34.615 0.00 0.00 0.00 4.57
3749 6739 8.141909 TCGCACTCTAGTATTATTTAAGCACAT 58.858 33.333 0.00 0.00 0.00 3.21
3761 6751 8.633075 TTATTTAAGCACATACGTGTAGTACC 57.367 34.615 0.00 0.00 45.50 3.34
3762 6752 5.902613 TTAAGCACATACGTGTAGTACCT 57.097 39.130 0.00 0.00 45.50 3.08
3763 6753 7.389803 TTTAAGCACATACGTGTAGTACCTA 57.610 36.000 0.00 0.00 45.50 3.08
3766 6756 4.885907 AGCACATACGTGTAGTACCTACAT 59.114 41.667 7.31 0.00 46.56 2.29
3777 6767 9.740239 CGTGTAGTACCTACATGTATACATTTT 57.260 33.333 15.85 8.57 46.56 1.82
3936 6926 9.693739 TTTCTTATAAGGAATGAATTAGTGGCA 57.306 29.630 12.54 0.00 0.00 4.92
3937 6927 9.866655 TTCTTATAAGGAATGAATTAGTGGCAT 57.133 29.630 12.54 0.00 0.00 4.40
3938 6928 9.866655 TCTTATAAGGAATGAATTAGTGGCATT 57.133 29.630 12.54 0.00 35.14 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.425066 TGTCTGCAGGTTGGATCCTTT 59.575 47.619 15.13 0.00 35.37 3.11
1 2 1.067295 TGTCTGCAGGTTGGATCCTT 58.933 50.000 15.13 0.00 35.37 3.36
2 3 0.326264 GTGTCTGCAGGTTGGATCCT 59.674 55.000 15.13 0.00 38.51 3.24
3 4 0.036732 TGTGTCTGCAGGTTGGATCC 59.963 55.000 15.13 4.20 0.00 3.36
4 5 1.160137 GTGTGTCTGCAGGTTGGATC 58.840 55.000 15.13 0.00 0.00 3.36
5 6 0.473755 TGTGTGTCTGCAGGTTGGAT 59.526 50.000 15.13 0.00 0.00 3.41
6 7 0.473755 ATGTGTGTCTGCAGGTTGGA 59.526 50.000 15.13 0.00 0.00 3.53
7 8 1.806542 GTATGTGTGTCTGCAGGTTGG 59.193 52.381 15.13 0.00 0.00 3.77
8 9 1.460743 CGTATGTGTGTCTGCAGGTTG 59.539 52.381 15.13 0.00 0.00 3.77
9 10 1.070134 ACGTATGTGTGTCTGCAGGTT 59.930 47.619 15.13 0.00 0.00 3.50
10 11 0.679505 ACGTATGTGTGTCTGCAGGT 59.320 50.000 15.13 0.00 0.00 4.00
11 12 2.163613 TCTACGTATGTGTGTCTGCAGG 59.836 50.000 15.13 0.00 0.00 4.85
12 13 3.172050 GTCTACGTATGTGTGTCTGCAG 58.828 50.000 7.63 7.63 0.00 4.41
13 14 2.413634 CGTCTACGTATGTGTGTCTGCA 60.414 50.000 0.00 0.00 34.11 4.41
14 15 2.159612 TCGTCTACGTATGTGTGTCTGC 60.160 50.000 0.00 0.00 40.80 4.26
15 16 3.734776 TCGTCTACGTATGTGTGTCTG 57.265 47.619 0.00 0.00 40.80 3.51
16 17 3.424039 CGTTCGTCTACGTATGTGTGTCT 60.424 47.826 0.00 0.00 40.80 3.41
17 18 2.836733 CGTTCGTCTACGTATGTGTGTC 59.163 50.000 0.00 0.00 40.80 3.67
18 19 2.480037 TCGTTCGTCTACGTATGTGTGT 59.520 45.455 0.00 0.00 42.01 3.72
19 20 3.107868 TCGTTCGTCTACGTATGTGTG 57.892 47.619 0.00 0.00 42.01 3.82
20 21 3.371898 TCATCGTTCGTCTACGTATGTGT 59.628 43.478 0.00 0.00 42.01 3.72
21 22 3.717890 GTCATCGTTCGTCTACGTATGTG 59.282 47.826 0.00 1.30 42.01 3.21
22 23 3.242543 GGTCATCGTTCGTCTACGTATGT 60.243 47.826 0.00 0.00 42.01 2.29
23 24 3.286576 GGTCATCGTTCGTCTACGTATG 58.713 50.000 0.00 0.00 42.01 2.39
24 25 2.033407 CGGTCATCGTTCGTCTACGTAT 60.033 50.000 0.00 0.00 42.01 3.06
25 26 1.324435 CGGTCATCGTTCGTCTACGTA 59.676 52.381 2.02 0.00 42.01 3.57
26 27 0.095935 CGGTCATCGTTCGTCTACGT 59.904 55.000 2.02 0.00 42.01 3.57
27 28 0.588233 CCGGTCATCGTTCGTCTACG 60.588 60.000 0.00 0.00 42.68 3.51
28 29 0.729116 TCCGGTCATCGTTCGTCTAC 59.271 55.000 0.00 0.00 37.11 2.59
29 30 1.600957 GATCCGGTCATCGTTCGTCTA 59.399 52.381 0.00 0.00 37.11 2.59
30 31 0.381089 GATCCGGTCATCGTTCGTCT 59.619 55.000 0.00 0.00 37.11 4.18
31 32 0.594284 GGATCCGGTCATCGTTCGTC 60.594 60.000 0.00 0.00 37.11 4.20
32 33 1.317431 TGGATCCGGTCATCGTTCGT 61.317 55.000 7.39 0.00 37.11 3.85
33 34 0.595053 CTGGATCCGGTCATCGTTCG 60.595 60.000 12.93 0.00 37.11 3.95
34 35 0.744874 TCTGGATCCGGTCATCGTTC 59.255 55.000 20.32 0.00 37.11 3.95
35 36 0.460311 GTCTGGATCCGGTCATCGTT 59.540 55.000 20.32 0.00 37.11 3.85
36 37 1.725557 CGTCTGGATCCGGTCATCGT 61.726 60.000 20.32 0.00 37.11 3.73
37 38 1.008424 CGTCTGGATCCGGTCATCG 60.008 63.158 20.32 15.65 38.88 3.84
38 39 1.107538 TCCGTCTGGATCCGGTCATC 61.108 60.000 20.32 8.68 44.51 2.92
39 40 1.076265 TCCGTCTGGATCCGGTCAT 60.076 57.895 20.32 0.00 44.51 3.06
40 41 2.357446 TCCGTCTGGATCCGGTCA 59.643 61.111 20.32 0.00 44.51 4.02
49 50 0.613260 TCTTTGGTGGATCCGTCTGG 59.387 55.000 7.39 0.00 39.52 3.86
50 51 1.001974 TGTCTTTGGTGGATCCGTCTG 59.998 52.381 7.39 0.00 39.52 3.51
51 52 1.348064 TGTCTTTGGTGGATCCGTCT 58.652 50.000 7.39 0.00 39.52 4.18
52 53 2.178912 TTGTCTTTGGTGGATCCGTC 57.821 50.000 7.39 2.58 39.52 4.79
53 54 2.227194 GTTTGTCTTTGGTGGATCCGT 58.773 47.619 7.39 0.00 39.52 4.69
54 55 1.196808 CGTTTGTCTTTGGTGGATCCG 59.803 52.381 7.39 0.00 39.52 4.18
55 56 1.068541 GCGTTTGTCTTTGGTGGATCC 60.069 52.381 4.20 4.20 0.00 3.36
56 57 1.068541 GGCGTTTGTCTTTGGTGGATC 60.069 52.381 0.00 0.00 0.00 3.36
57 58 0.958822 GGCGTTTGTCTTTGGTGGAT 59.041 50.000 0.00 0.00 0.00 3.41
58 59 1.440938 CGGCGTTTGTCTTTGGTGGA 61.441 55.000 0.00 0.00 0.00 4.02
59 60 1.008995 CGGCGTTTGTCTTTGGTGG 60.009 57.895 0.00 0.00 0.00 4.61
64 65 1.504359 TTCGATCGGCGTTTGTCTTT 58.496 45.000 16.41 0.00 41.80 2.52
76 77 1.401670 GGATCTCGTGGGATTCGATCG 60.402 57.143 9.36 9.36 36.73 3.69
79 80 2.030551 CGGATCTCGTGGGATTCGA 58.969 57.895 4.33 0.00 44.78 3.71
81 82 1.301009 GGCGGATCTCGTGGGATTC 60.301 63.158 5.66 0.00 41.72 2.52
111 112 1.391933 ATGCATCTACTGTCGCCGGA 61.392 55.000 5.05 0.00 0.00 5.14
113 114 1.271446 CGATGCATCTACTGTCGCCG 61.271 60.000 23.73 3.97 0.00 6.46
118 119 0.105593 CCTGGCGATGCATCTACTGT 59.894 55.000 23.73 0.00 0.00 3.55
119 120 0.390492 TCCTGGCGATGCATCTACTG 59.610 55.000 23.73 17.86 0.00 2.74
120 121 1.001746 CATCCTGGCGATGCATCTACT 59.998 52.381 23.73 0.00 41.99 2.57
126 127 3.089217 TCCCATCCTGGCGATGCA 61.089 61.111 0.00 0.00 46.17 3.96
135 136 1.461075 CCAGCCTAGCTCCCATCCT 60.461 63.158 0.00 0.00 36.40 3.24
139 140 2.041508 CTCCCAGCCTAGCTCCCA 60.042 66.667 0.00 0.00 36.40 4.37
143 144 2.041405 GGTCCTCCCAGCCTAGCT 60.041 66.667 0.00 0.00 40.77 3.32
148 149 0.474614 GGAATAAGGTCCTCCCAGCC 59.525 60.000 0.00 0.00 34.56 4.85
149 150 0.106894 CGGAATAAGGTCCTCCCAGC 59.893 60.000 0.00 0.00 35.31 4.85
154 155 4.159879 TCTTGAAGACGGAATAAGGTCCTC 59.840 45.833 0.00 0.00 35.31 3.71
166 167 1.866925 GGCGGTTTCTTGAAGACGG 59.133 57.895 0.00 0.00 0.00 4.79
168 169 1.206831 GCGGCGGTTTCTTGAAGAC 59.793 57.895 9.78 0.00 0.00 3.01
183 184 0.103208 ATAAGAAGACGAGGCAGCGG 59.897 55.000 4.86 0.00 35.12 5.52
184 185 1.202302 TGATAAGAAGACGAGGCAGCG 60.202 52.381 0.00 0.00 37.29 5.18
188 189 2.139118 GCCATGATAAGAAGACGAGGC 58.861 52.381 0.00 0.00 0.00 4.70
207 208 6.569179 TTTGAGTTTTGTTAGGGTCTATGC 57.431 37.500 0.00 0.00 0.00 3.14
252 253 1.672356 CAGCCCTTGTTGACGGGAG 60.672 63.158 0.00 0.00 43.44 4.30
258 259 1.304381 GGATGCCAGCCCTTGTTGA 60.304 57.895 0.00 0.00 0.00 3.18
260 261 1.607467 GTGGATGCCAGCCCTTGTT 60.607 57.895 0.00 0.00 32.34 2.83
261 262 2.036256 GTGGATGCCAGCCCTTGT 59.964 61.111 0.00 0.00 32.34 3.16
269 270 4.408821 GAGGTGCGGTGGATGCCA 62.409 66.667 0.00 0.00 0.00 4.92
291 292 2.617308 TCGTCTCCTATGATCGTTGGAC 59.383 50.000 13.35 5.75 0.00 4.02
293 294 2.030717 CCTCGTCTCCTATGATCGTTGG 60.031 54.545 8.94 8.94 0.00 3.77
297 298 0.167033 CGCCTCGTCTCCTATGATCG 59.833 60.000 0.00 0.00 0.00 3.69
300 301 0.818445 GTCCGCCTCGTCTCCTATGA 60.818 60.000 0.00 0.00 0.00 2.15
336 337 2.429250 GTCTAGGGTTTCTCTGCCTCTC 59.571 54.545 0.00 0.00 0.00 3.20
338 339 1.135333 CGTCTAGGGTTTCTCTGCCTC 59.865 57.143 0.00 0.00 0.00 4.70
339 340 1.187087 CGTCTAGGGTTTCTCTGCCT 58.813 55.000 0.00 0.00 0.00 4.75
340 341 1.135333 CTCGTCTAGGGTTTCTCTGCC 59.865 57.143 0.00 0.00 0.00 4.85
341 342 2.093106 TCTCGTCTAGGGTTTCTCTGC 58.907 52.381 0.00 0.00 0.00 4.26
342 343 3.349022 ACTCTCGTCTAGGGTTTCTCTG 58.651 50.000 0.00 0.00 34.10 3.35
343 344 3.724732 ACTCTCGTCTAGGGTTTCTCT 57.275 47.619 0.00 0.00 34.10 3.10
350 351 3.697045 ACATGAAGAACTCTCGTCTAGGG 59.303 47.826 0.00 0.00 31.92 3.53
357 358 6.153067 ACTCTGTTTACATGAAGAACTCTCG 58.847 40.000 0.00 0.00 0.00 4.04
378 379 9.968870 ATCTAACTCTAATCCATCGTTTAACTC 57.031 33.333 0.00 0.00 0.00 3.01
379 380 9.751542 CATCTAACTCTAATCCATCGTTTAACT 57.248 33.333 0.00 0.00 0.00 2.24
411 412 5.023533 AGACACCGCATATTGATGTAACT 57.976 39.130 0.00 0.00 35.30 2.24
415 416 2.159099 ACGAGACACCGCATATTGATGT 60.159 45.455 0.00 0.00 35.30 3.06
430 431 1.873698 TAGGGTTTGTTGCACGAGAC 58.126 50.000 0.00 0.00 0.00 3.36
474 476 4.085733 CACAAACCATCAACTATTGGGGA 58.914 43.478 7.04 0.00 37.32 4.81
477 479 4.517952 TGCACAAACCATCAACTATTGG 57.482 40.909 0.00 0.00 39.02 3.16
483 485 5.294060 AGACAAAATTGCACAAACCATCAAC 59.706 36.000 0.00 0.00 0.00 3.18
497 499 5.577945 GGCATGGTAATGACAGACAAAATTG 59.422 40.000 0.00 0.00 41.98 2.32
508 510 2.752903 AGTTTTCGGGCATGGTAATGAC 59.247 45.455 0.00 0.00 41.61 3.06
512 514 2.304761 AGAGAGTTTTCGGGCATGGTAA 59.695 45.455 0.00 0.00 0.00 2.85
515 517 1.470098 CAAGAGAGTTTTCGGGCATGG 59.530 52.381 0.00 0.00 0.00 3.66
521 523 3.364366 GCATCACACAAGAGAGTTTTCGG 60.364 47.826 0.00 0.00 0.00 4.30
522 524 3.364366 GGCATCACACAAGAGAGTTTTCG 60.364 47.826 0.00 0.00 0.00 3.46
547 549 5.513267 GGACAGAGGAGTACCAATTTTCAGT 60.513 44.000 0.00 0.00 38.94 3.41
548 550 4.938226 GGACAGAGGAGTACCAATTTTCAG 59.062 45.833 0.00 0.00 38.94 3.02
549 551 4.562757 CGGACAGAGGAGTACCAATTTTCA 60.563 45.833 0.00 0.00 38.94 2.69
550 552 3.933332 CGGACAGAGGAGTACCAATTTTC 59.067 47.826 0.00 0.00 38.94 2.29
558 560 3.952967 AGTAATTCCGGACAGAGGAGTAC 59.047 47.826 1.83 1.83 39.22 2.73
565 567 2.614481 GCCACAAGTAATTCCGGACAGA 60.614 50.000 1.83 0.00 0.00 3.41
566 568 1.737793 GCCACAAGTAATTCCGGACAG 59.262 52.381 1.83 0.00 0.00 3.51
568 570 2.007608 GAGCCACAAGTAATTCCGGAC 58.992 52.381 1.83 0.00 0.00 4.79
569 571 1.626321 TGAGCCACAAGTAATTCCGGA 59.374 47.619 0.00 0.00 0.00 5.14
570 572 2.107950 TGAGCCACAAGTAATTCCGG 57.892 50.000 0.00 0.00 0.00 5.14
572 574 4.278419 ACAGTTTGAGCCACAAGTAATTCC 59.722 41.667 0.00 0.00 39.77 3.01
581 584 4.191544 GCATATCTACAGTTTGAGCCACA 58.808 43.478 0.00 0.00 0.00 4.17
584 587 3.246226 CGTGCATATCTACAGTTTGAGCC 59.754 47.826 0.00 0.00 0.00 4.70
606 609 5.993748 TCAGATATTTTGGGTTGGGAAAC 57.006 39.130 0.00 0.00 0.00 2.78
613 616 6.156602 TGGCAAATGATCAGATATTTTGGGTT 59.843 34.615 16.53 0.00 0.00 4.11
615 618 5.987347 GTGGCAAATGATCAGATATTTTGGG 59.013 40.000 16.53 0.00 0.00 4.12
616 619 5.688621 CGTGGCAAATGATCAGATATTTTGG 59.311 40.000 16.53 0.00 0.00 3.28
631 634 2.026262 ACTGGTTATCCTCGTGGCAAAT 60.026 45.455 0.00 0.00 34.23 2.32
779 790 0.605319 GGGTGACACGGAGCATCAAA 60.605 55.000 0.00 0.00 36.25 2.69
933 944 2.183300 CCGCGCTAGTGGTTGCTA 59.817 61.111 5.56 0.00 42.91 3.49
962 973 1.598130 GTGGGTTCGCTGCTCTTGT 60.598 57.895 0.00 0.00 0.00 3.16
991 1002 3.987187 CGTCGCCATGTACGGTAC 58.013 61.111 11.33 11.33 35.51 3.34
995 1006 4.840288 TCGCCGTCGCCATGTACG 62.840 66.667 5.72 5.72 38.80 3.67
1162 1181 2.413142 GCAAGGTGGAGGCATGCTC 61.413 63.158 18.92 12.66 34.29 4.26
1165 1184 0.609957 TTGAGCAAGGTGGAGGCATG 60.610 55.000 0.00 0.00 0.00 4.06
1199 1225 4.256462 TGCACAGCAGAGCCAAAA 57.744 50.000 0.00 0.00 33.32 2.44
1214 1240 3.482783 GCGTCAACGAGAGCCTGC 61.483 66.667 6.75 0.00 43.02 4.85
1220 1246 1.443702 CGTCCATGCGTCAACGAGA 60.444 57.895 6.75 0.00 43.02 4.04
1223 1249 4.147322 GCCGTCCATGCGTCAACG 62.147 66.667 0.00 0.00 43.27 4.10
1359 1385 1.304617 GGCAGGAAGGAAGGAAGGG 59.695 63.158 0.00 0.00 0.00 3.95
1652 1684 7.865707 ACAAGTAGTGAGTTCAACATTCATTC 58.134 34.615 0.00 0.00 0.00 2.67
1653 1685 7.807977 ACAAGTAGTGAGTTCAACATTCATT 57.192 32.000 0.00 0.00 0.00 2.57
1654 1686 7.807977 AACAAGTAGTGAGTTCAACATTCAT 57.192 32.000 0.00 0.00 0.00 2.57
1655 1687 7.335673 TGAAACAAGTAGTGAGTTCAACATTCA 59.664 33.333 0.00 0.00 34.22 2.57
1656 1688 7.693952 TGAAACAAGTAGTGAGTTCAACATTC 58.306 34.615 0.00 0.00 34.22 2.67
1657 1689 7.624360 TGAAACAAGTAGTGAGTTCAACATT 57.376 32.000 0.00 0.00 34.22 2.71
1658 1690 7.498900 TGATGAAACAAGTAGTGAGTTCAACAT 59.501 33.333 0.00 0.00 37.90 2.71
1659 1691 6.821160 TGATGAAACAAGTAGTGAGTTCAACA 59.179 34.615 0.00 0.00 37.90 3.33
1660 1692 7.011482 AGTGATGAAACAAGTAGTGAGTTCAAC 59.989 37.037 0.00 0.00 37.90 3.18
1661 1693 7.011389 CAGTGATGAAACAAGTAGTGAGTTCAA 59.989 37.037 0.00 0.00 37.90 2.69
1662 1694 6.479990 CAGTGATGAAACAAGTAGTGAGTTCA 59.520 38.462 0.00 0.00 38.37 3.18
1663 1695 6.480320 ACAGTGATGAAACAAGTAGTGAGTTC 59.520 38.462 0.00 0.00 0.00 3.01
1664 1696 6.349300 ACAGTGATGAAACAAGTAGTGAGTT 58.651 36.000 0.00 0.00 0.00 3.01
1665 1697 5.918608 ACAGTGATGAAACAAGTAGTGAGT 58.081 37.500 0.00 0.00 0.00 3.41
1666 1698 7.814587 TCATACAGTGATGAAACAAGTAGTGAG 59.185 37.037 0.00 0.00 32.84 3.51
1667 1699 7.666623 TCATACAGTGATGAAACAAGTAGTGA 58.333 34.615 0.00 0.00 32.84 3.41
1668 1700 7.889589 TCATACAGTGATGAAACAAGTAGTG 57.110 36.000 0.00 0.00 32.84 2.74
1669 1701 8.939929 CAATCATACAGTGATGAAACAAGTAGT 58.060 33.333 0.00 0.00 46.80 2.73
1670 1702 8.939929 ACAATCATACAGTGATGAAACAAGTAG 58.060 33.333 0.00 0.00 46.80 2.57
1671 1703 8.720562 CACAATCATACAGTGATGAAACAAGTA 58.279 33.333 0.00 0.00 46.80 2.24
1672 1704 7.587629 CACAATCATACAGTGATGAAACAAGT 58.412 34.615 0.00 0.00 46.80 3.16
1673 1705 6.525628 GCACAATCATACAGTGATGAAACAAG 59.474 38.462 0.00 0.00 46.80 3.16
1740 1772 3.570926 CAATGCTGCAGAGACACAATT 57.429 42.857 20.43 2.01 0.00 2.32
1773 1805 1.002011 GGAGTTCACCTTGGGAGCC 60.002 63.158 0.00 0.00 0.00 4.70
1794 1826 2.589720 TCAGAGTAGTCAAACGGGACA 58.410 47.619 0.00 0.00 40.29 4.02
1795 1827 3.655276 TTCAGAGTAGTCAAACGGGAC 57.345 47.619 0.00 0.00 38.08 4.46
1796 1828 3.576982 ACATTCAGAGTAGTCAAACGGGA 59.423 43.478 0.00 0.00 0.00 5.14
1797 1829 3.926616 ACATTCAGAGTAGTCAAACGGG 58.073 45.455 0.00 0.00 0.00 5.28
1798 1830 5.679906 CAAACATTCAGAGTAGTCAAACGG 58.320 41.667 0.00 0.00 0.00 4.44
1799 1831 5.050091 AGCAAACATTCAGAGTAGTCAAACG 60.050 40.000 0.00 0.00 0.00 3.60
1800 1832 6.305693 AGCAAACATTCAGAGTAGTCAAAC 57.694 37.500 0.00 0.00 0.00 2.93
1801 1833 5.470098 GGAGCAAACATTCAGAGTAGTCAAA 59.530 40.000 0.00 0.00 0.00 2.69
1802 1834 4.997395 GGAGCAAACATTCAGAGTAGTCAA 59.003 41.667 0.00 0.00 0.00 3.18
1803 1835 4.040339 TGGAGCAAACATTCAGAGTAGTCA 59.960 41.667 0.00 0.00 0.00 3.41
1804 1836 4.569943 TGGAGCAAACATTCAGAGTAGTC 58.430 43.478 0.00 0.00 0.00 2.59
1805 1837 4.040952 ACTGGAGCAAACATTCAGAGTAGT 59.959 41.667 0.00 0.00 0.00 2.73
1806 1838 4.391216 CACTGGAGCAAACATTCAGAGTAG 59.609 45.833 0.00 0.00 0.00 2.57
1807 1839 4.318332 CACTGGAGCAAACATTCAGAGTA 58.682 43.478 0.00 0.00 0.00 2.59
1808 1840 3.144506 CACTGGAGCAAACATTCAGAGT 58.855 45.455 0.00 0.00 0.00 3.24
1809 1841 2.486982 CCACTGGAGCAAACATTCAGAG 59.513 50.000 0.00 0.00 0.00 3.35
1810 1842 2.507484 CCACTGGAGCAAACATTCAGA 58.493 47.619 0.00 0.00 0.00 3.27
1811 1843 1.542915 CCCACTGGAGCAAACATTCAG 59.457 52.381 0.00 0.00 0.00 3.02
1812 1844 1.144708 TCCCACTGGAGCAAACATTCA 59.855 47.619 0.00 0.00 35.03 2.57
1813 1845 1.909700 TCCCACTGGAGCAAACATTC 58.090 50.000 0.00 0.00 35.03 2.67
1814 1846 2.450476 GATCCCACTGGAGCAAACATT 58.550 47.619 0.00 0.00 46.65 2.71
1815 1847 2.134789 GATCCCACTGGAGCAAACAT 57.865 50.000 0.00 0.00 46.65 2.71
1821 1853 2.750657 CCCCTGATCCCACTGGAGC 61.751 68.421 0.00 0.00 46.08 4.70
1824 1856 0.990282 ATGTCCCCTGATCCCACTGG 60.990 60.000 0.00 0.00 0.00 4.00
1827 1859 1.143813 ATGATGTCCCCTGATCCCAC 58.856 55.000 0.00 0.00 0.00 4.61
1829 1861 2.590821 CAAATGATGTCCCCTGATCCC 58.409 52.381 0.00 0.00 0.00 3.85
1830 1862 1.959282 GCAAATGATGTCCCCTGATCC 59.041 52.381 0.00 0.00 0.00 3.36
1834 1866 1.856629 AAGGCAAATGATGTCCCCTG 58.143 50.000 0.00 0.00 32.58 4.45
1835 1867 2.629017 AAAGGCAAATGATGTCCCCT 57.371 45.000 0.00 0.00 32.58 4.79
1836 1868 2.566724 TGAAAAGGCAAATGATGTCCCC 59.433 45.455 0.00 0.00 32.58 4.81
1837 1869 3.959535 TGAAAAGGCAAATGATGTCCC 57.040 42.857 0.00 0.00 32.58 4.46
1839 1871 8.598075 GTGATAAATGAAAAGGCAAATGATGTC 58.402 33.333 0.00 0.00 0.00 3.06
1840 1872 8.316214 AGTGATAAATGAAAAGGCAAATGATGT 58.684 29.630 0.00 0.00 0.00 3.06
1867 1899 4.367450 CATCCGCCAAGAACAAAGAAAAA 58.633 39.130 0.00 0.00 0.00 1.94
1869 1901 2.288152 GCATCCGCCAAGAACAAAGAAA 60.288 45.455 0.00 0.00 0.00 2.52
1870 1902 1.269448 GCATCCGCCAAGAACAAAGAA 59.731 47.619 0.00 0.00 0.00 2.52
1871 1903 0.881118 GCATCCGCCAAGAACAAAGA 59.119 50.000 0.00 0.00 0.00 2.52
1872 1904 0.597568 TGCATCCGCCAAGAACAAAG 59.402 50.000 0.00 0.00 37.32 2.77
1873 1905 1.067706 CATGCATCCGCCAAGAACAAA 60.068 47.619 0.00 0.00 37.32 2.83
1874 1906 0.527113 CATGCATCCGCCAAGAACAA 59.473 50.000 0.00 0.00 37.32 2.83
1876 1908 1.226773 GCATGCATCCGCCAAGAAC 60.227 57.895 14.21 0.00 37.32 3.01
1878 1910 2.045143 TGCATGCATCCGCCAAGA 60.045 55.556 18.46 0.00 37.32 3.02
1886 1918 2.025727 GAAGCGCCTGCATGCATC 59.974 61.111 22.97 14.95 46.23 3.91
1892 1948 3.043713 CGAAGTGAAGCGCCTGCA 61.044 61.111 2.29 0.00 46.23 4.41
2285 2407 2.040813 ACCAATGGAGTTGCTGATGAGT 59.959 45.455 6.16 0.00 36.46 3.41
2295 2417 5.047802 CAGACAAGCATTTACCAATGGAGTT 60.048 40.000 6.16 0.00 40.36 3.01
2333 2455 3.118775 TCCCAATACTGACAGATCCAACG 60.119 47.826 10.08 0.00 0.00 4.10
2521 2679 2.281345 CCGCAGCCATCCTGATCC 60.281 66.667 0.00 0.00 44.64 3.36
2522 2680 2.104572 TAGCCGCAGCCATCCTGATC 62.105 60.000 0.00 0.00 44.64 2.92
2638 2796 0.864797 GAGATCGTACCGCGGTTGAC 60.865 60.000 38.94 27.91 41.72 3.18
2641 2799 1.432251 CAGAGATCGTACCGCGGTT 59.568 57.895 38.94 19.76 41.72 4.44
2662 2825 2.935955 GTGTTTGTCCGTCAGGCG 59.064 61.111 0.00 0.00 40.95 5.52
2666 2829 2.702751 ATCGGCGTGTTTGTCCGTCA 62.703 55.000 6.85 0.00 43.35 4.35
2670 2833 1.082117 ATCGATCGGCGTGTTTGTCC 61.082 55.000 16.41 0.00 41.80 4.02
2699 2862 3.763897 ACAAGAAGCAGACCACAAAGTTT 59.236 39.130 0.00 0.00 0.00 2.66
2700 2863 3.356290 ACAAGAAGCAGACCACAAAGTT 58.644 40.909 0.00 0.00 0.00 2.66
2701 2864 3.004752 ACAAGAAGCAGACCACAAAGT 57.995 42.857 0.00 0.00 0.00 2.66
2702 2865 3.629398 AGAACAAGAAGCAGACCACAAAG 59.371 43.478 0.00 0.00 0.00 2.77
2703 2866 3.620488 AGAACAAGAAGCAGACCACAAA 58.380 40.909 0.00 0.00 0.00 2.83
2704 2867 3.281727 AGAACAAGAAGCAGACCACAA 57.718 42.857 0.00 0.00 0.00 3.33
2705 2868 2.945008 CAAGAACAAGAAGCAGACCACA 59.055 45.455 0.00 0.00 0.00 4.17
2706 2869 2.291741 CCAAGAACAAGAAGCAGACCAC 59.708 50.000 0.00 0.00 0.00 4.16
2870 3033 1.079127 GCTGAGCCGCTTCAGGTTA 60.079 57.895 16.61 0.00 43.80 2.85
2986 3152 3.443925 CGGCTCACTGCTCCTCGA 61.444 66.667 0.00 0.00 42.39 4.04
2994 3160 1.214062 GAGACCTCACGGCTCACTG 59.786 63.158 0.00 0.00 35.12 3.66
3014 3186 0.763223 AGTGAGACCAAGAACCCGGT 60.763 55.000 0.00 0.00 38.56 5.28
3058 3295 5.806366 AATACAAAGTACAATACACGGCC 57.194 39.130 0.00 0.00 0.00 6.13
3078 3315 9.982651 GGAGTACAGTACATCACAATATGTAAT 57.017 33.333 13.37 0.00 42.43 1.89
3080 3317 7.255346 CGGGAGTACAGTACATCACAATATGTA 60.255 40.741 13.37 0.00 40.52 2.29
3081 3318 6.461092 CGGGAGTACAGTACATCACAATATGT 60.461 42.308 13.37 0.00 42.62 2.29
3082 3319 5.920840 CGGGAGTACAGTACATCACAATATG 59.079 44.000 13.37 0.00 0.00 1.78
3141 3378 6.320418 ACCCAAATTTACTTTTTCAGTCGACT 59.680 34.615 13.58 13.58 36.88 4.18
3142 3379 6.500910 ACCCAAATTTACTTTTTCAGTCGAC 58.499 36.000 7.70 7.70 36.88 4.20
3143 3380 6.319152 TGACCCAAATTTACTTTTTCAGTCGA 59.681 34.615 0.00 0.00 36.88 4.20
3144 3381 6.500041 TGACCCAAATTTACTTTTTCAGTCG 58.500 36.000 0.00 0.00 36.88 4.18
3145 3382 7.489160 ACTGACCCAAATTTACTTTTTCAGTC 58.511 34.615 9.50 0.00 35.71 3.51
3146 3383 7.123547 TGACTGACCCAAATTTACTTTTTCAGT 59.876 33.333 12.92 12.92 39.41 3.41
3147 3384 7.488322 TGACTGACCCAAATTTACTTTTTCAG 58.512 34.615 0.00 0.83 34.58 3.02
3149 3386 7.979537 AGTTGACTGACCCAAATTTACTTTTTC 59.020 33.333 0.00 0.00 0.00 2.29
3150 3387 7.763985 CAGTTGACTGACCCAAATTTACTTTTT 59.236 33.333 5.19 0.00 46.59 1.94
3166 3403 4.214061 CGAGTTCGGGTCAGTTGACTGA 62.214 54.545 9.67 9.67 44.20 3.41
3167 3404 1.784525 GAGTTCGGGTCAGTTGACTG 58.215 55.000 11.67 4.77 44.20 3.51
3168 3405 0.314302 CGAGTTCGGGTCAGTTGACT 59.686 55.000 11.67 0.00 44.20 3.41
3169 3406 0.031721 ACGAGTTCGGGTCAGTTGAC 59.968 55.000 6.48 3.67 44.95 3.18
3170 3407 0.748450 AACGAGTTCGGGTCAGTTGA 59.252 50.000 6.48 0.00 44.95 3.18
3171 3408 1.525619 GAAACGAGTTCGGGTCAGTTG 59.474 52.381 6.48 0.00 44.95 3.16
3172 3409 1.137479 TGAAACGAGTTCGGGTCAGTT 59.863 47.619 6.48 0.00 44.95 3.16
3173 3410 0.748450 TGAAACGAGTTCGGGTCAGT 59.252 50.000 6.48 0.00 44.95 3.41
3174 3411 1.419374 CTGAAACGAGTTCGGGTCAG 58.581 55.000 16.78 16.78 43.04 3.51
3175 3412 0.599204 GCTGAAACGAGTTCGGGTCA 60.599 55.000 6.48 7.66 42.18 4.02
3177 3414 1.746517 AGCTGAAACGAGTTCGGGT 59.253 52.632 6.48 10.10 46.33 5.28
3180 3417 3.852536 CCTAGTTAGCTGAAACGAGTTCG 59.147 47.826 0.00 0.00 46.33 3.95
3181 3418 3.613299 GCCTAGTTAGCTGAAACGAGTTC 59.387 47.826 0.00 0.00 32.18 3.01
3183 3420 2.415625 CGCCTAGTTAGCTGAAACGAGT 60.416 50.000 0.00 0.00 32.18 4.18
3185 3422 1.814394 TCGCCTAGTTAGCTGAAACGA 59.186 47.619 0.00 0.00 34.46 3.85
3186 3423 2.186076 CTCGCCTAGTTAGCTGAAACG 58.814 52.381 0.00 0.00 34.46 3.60
3187 3424 1.927838 GCTCGCCTAGTTAGCTGAAAC 59.072 52.381 0.00 0.00 33.40 2.78
3188 3425 1.548719 TGCTCGCCTAGTTAGCTGAAA 59.451 47.619 0.00 0.00 37.16 2.69
3189 3426 1.135139 CTGCTCGCCTAGTTAGCTGAA 59.865 52.381 0.00 0.00 37.37 3.02
3190 3427 0.741326 CTGCTCGCCTAGTTAGCTGA 59.259 55.000 0.00 0.00 37.37 4.26
3193 3430 1.592939 GCCTGCTCGCCTAGTTAGC 60.593 63.158 2.19 2.19 36.77 3.09
3194 3431 1.068250 GGCCTGCTCGCCTAGTTAG 59.932 63.158 7.31 0.00 46.10 2.34
3210 3447 4.626081 AGTGTGACACCGGCAGGC 62.626 66.667 12.81 0.00 42.76 4.85
3211 3448 2.357517 GAGTGTGACACCGGCAGG 60.358 66.667 12.81 0.00 45.13 4.85
3212 3449 2.357517 GGAGTGTGACACCGGCAG 60.358 66.667 12.81 0.00 34.49 4.85
3217 3454 5.622770 AATTAATTTCGGAGTGTGACACC 57.377 39.130 12.81 3.88 34.49 4.16
3218 3455 6.092259 AGCTAATTAATTTCGGAGTGTGACAC 59.908 38.462 7.83 7.83 34.10 3.67
3219 3456 6.170506 AGCTAATTAATTTCGGAGTGTGACA 58.829 36.000 5.91 0.00 0.00 3.58
3220 3457 6.663944 AGCTAATTAATTTCGGAGTGTGAC 57.336 37.500 5.91 0.00 0.00 3.67
3221 3458 7.681939 AAAGCTAATTAATTTCGGAGTGTGA 57.318 32.000 5.91 0.00 0.00 3.58
3222 3459 7.954906 GAAAGCTAATTAATTTCGGAGTGTG 57.045 36.000 5.91 0.00 0.00 3.82
3247 3484 1.152383 GCTGCCCGTACGAATTCCTC 61.152 60.000 18.76 0.00 0.00 3.71
3251 3488 3.192922 GCGCTGCCCGTACGAATT 61.193 61.111 18.76 0.00 39.71 2.17
3264 3501 3.580100 ATGTGCACTCGTCAGCGCT 62.580 57.895 19.41 2.64 41.57 5.92
3265 3502 3.114616 ATGTGCACTCGTCAGCGC 61.115 61.111 19.41 0.00 41.40 5.92
3266 3503 2.774126 CATGTGCACTCGTCAGCG 59.226 61.111 19.41 0.00 39.92 5.18
3277 3514 1.778591 GTACGTTGTTTGTGCATGTGC 59.221 47.619 0.00 0.00 42.50 4.57
3278 3515 2.032799 AGGTACGTTGTTTGTGCATGTG 59.967 45.455 0.00 0.00 0.00 3.21
3279 3516 2.294074 AGGTACGTTGTTTGTGCATGT 58.706 42.857 0.00 0.00 0.00 3.21
3280 3517 3.248841 TGTAGGTACGTTGTTTGTGCATG 59.751 43.478 0.00 0.00 0.00 4.06
3281 3518 3.468770 TGTAGGTACGTTGTTTGTGCAT 58.531 40.909 0.00 0.00 0.00 3.96
3282 3519 2.902523 TGTAGGTACGTTGTTTGTGCA 58.097 42.857 0.00 0.00 0.00 4.57
3284 3521 5.181235 CGTATGTAGGTACGTTGTTTGTG 57.819 43.478 0.00 0.00 41.75 3.33
3295 3532 6.380995 CAGTGTTGTTGTACGTATGTAGGTA 58.619 40.000 0.00 0.00 0.00 3.08
3296 3533 5.224888 CAGTGTTGTTGTACGTATGTAGGT 58.775 41.667 0.00 0.00 0.00 3.08
3298 3535 4.921515 AGCAGTGTTGTTGTACGTATGTAG 59.078 41.667 0.00 0.00 0.00 2.74
3299 3536 4.873817 AGCAGTGTTGTTGTACGTATGTA 58.126 39.130 0.00 0.00 0.00 2.29
3300 3537 3.724374 AGCAGTGTTGTTGTACGTATGT 58.276 40.909 0.00 0.00 0.00 2.29
3301 3538 4.201589 GCTAGCAGTGTTGTTGTACGTATG 60.202 45.833 10.63 0.00 0.00 2.39
3302 3539 3.924686 GCTAGCAGTGTTGTTGTACGTAT 59.075 43.478 10.63 0.00 0.00 3.06
3303 3540 3.005050 AGCTAGCAGTGTTGTTGTACGTA 59.995 43.478 18.83 0.00 0.00 3.57
3305 3542 2.404215 AGCTAGCAGTGTTGTTGTACG 58.596 47.619 18.83 0.00 0.00 3.67
3320 3557 6.264292 TGAAGAAGAGGAATGTAGCTAGCTAG 59.736 42.308 24.78 16.84 0.00 3.42
3321 3558 6.129874 TGAAGAAGAGGAATGTAGCTAGCTA 58.870 40.000 20.67 20.67 0.00 3.32
3322 3559 4.959210 TGAAGAAGAGGAATGTAGCTAGCT 59.041 41.667 23.12 23.12 0.00 3.32
3323 3560 5.269505 TGAAGAAGAGGAATGTAGCTAGC 57.730 43.478 6.62 6.62 0.00 3.42
3362 4151 3.281727 TCCATGCTTAAGGCTTTCGAT 57.718 42.857 4.45 0.00 42.39 3.59
3364 4153 3.344904 CATCCATGCTTAAGGCTTTCG 57.655 47.619 4.45 0.00 42.39 3.46
3381 4320 4.557695 CGGAGGTAGTACTTGAGATGCATC 60.558 50.000 19.37 19.37 0.00 3.91
3388 4327 3.822940 AGGATCGGAGGTAGTACTTGAG 58.177 50.000 0.00 0.00 0.00 3.02
3389 4328 3.947612 AGGATCGGAGGTAGTACTTGA 57.052 47.619 0.00 0.00 0.00 3.02
3393 4332 3.304324 GCGTAAAGGATCGGAGGTAGTAC 60.304 52.174 0.00 0.00 0.00 2.73
3396 4335 1.679680 TGCGTAAAGGATCGGAGGTAG 59.320 52.381 0.00 0.00 0.00 3.18
3398 4337 0.899720 TTGCGTAAAGGATCGGAGGT 59.100 50.000 0.00 0.00 0.00 3.85
3408 4347 7.201401 GCCAAAAATAATACACCTTGCGTAAAG 60.201 37.037 0.00 0.00 35.47 1.85
3410 4349 6.094061 GCCAAAAATAATACACCTTGCGTAA 58.906 36.000 0.00 0.00 0.00 3.18
3411 4350 5.183331 TGCCAAAAATAATACACCTTGCGTA 59.817 36.000 0.00 0.00 0.00 4.42
3413 4352 4.489810 TGCCAAAAATAATACACCTTGCG 58.510 39.130 0.00 0.00 0.00 4.85
3414 4353 5.294060 CCATGCCAAAAATAATACACCTTGC 59.706 40.000 0.00 0.00 0.00 4.01
3415 4354 5.294060 GCCATGCCAAAAATAATACACCTTG 59.706 40.000 0.00 0.00 0.00 3.61
3416 4355 5.427378 GCCATGCCAAAAATAATACACCTT 58.573 37.500 0.00 0.00 0.00 3.50
3417 4356 5.022282 GCCATGCCAAAAATAATACACCT 57.978 39.130 0.00 0.00 0.00 4.00
3439 4378 1.762708 ATAATTCCGTGCCTTGGTGG 58.237 50.000 0.00 0.00 39.35 4.61
3440 4379 3.560068 GTCTATAATTCCGTGCCTTGGTG 59.440 47.826 0.00 0.00 0.00 4.17
3441 4380 3.199071 TGTCTATAATTCCGTGCCTTGGT 59.801 43.478 0.00 0.00 0.00 3.67
3442 4381 3.804036 TGTCTATAATTCCGTGCCTTGG 58.196 45.455 0.00 0.00 0.00 3.61
3443 4382 4.816385 ACATGTCTATAATTCCGTGCCTTG 59.184 41.667 0.00 0.00 0.00 3.61
3444 4383 5.036117 ACATGTCTATAATTCCGTGCCTT 57.964 39.130 0.00 0.00 0.00 4.35
3445 4384 4.689612 ACATGTCTATAATTCCGTGCCT 57.310 40.909 0.00 0.00 0.00 4.75
3446 4385 5.408604 CCTAACATGTCTATAATTCCGTGCC 59.591 44.000 0.00 0.00 0.00 5.01
3447 4386 6.145696 GTCCTAACATGTCTATAATTCCGTGC 59.854 42.308 0.00 0.00 0.00 5.34
3448 4387 6.362551 CGTCCTAACATGTCTATAATTCCGTG 59.637 42.308 0.00 0.00 0.00 4.94
3449 4388 6.263842 TCGTCCTAACATGTCTATAATTCCGT 59.736 38.462 0.00 0.00 0.00 4.69
3450 4389 6.675026 TCGTCCTAACATGTCTATAATTCCG 58.325 40.000 0.00 0.00 0.00 4.30
3451 4390 8.882415 TTTCGTCCTAACATGTCTATAATTCC 57.118 34.615 0.00 0.00 0.00 3.01
3456 4395 9.740239 GTGTAATTTCGTCCTAACATGTCTATA 57.260 33.333 0.00 0.00 0.00 1.31
3457 4396 8.475639 AGTGTAATTTCGTCCTAACATGTCTAT 58.524 33.333 0.00 0.00 0.00 1.98
3460 4399 6.963049 AGTGTAATTTCGTCCTAACATGTC 57.037 37.500 0.00 0.00 0.00 3.06
3462 4401 6.542852 CCAAGTGTAATTTCGTCCTAACATG 58.457 40.000 0.00 0.00 0.00 3.21
3464 4403 4.453136 GCCAAGTGTAATTTCGTCCTAACA 59.547 41.667 0.00 0.00 0.00 2.41
3465 4404 4.453136 TGCCAAGTGTAATTTCGTCCTAAC 59.547 41.667 0.00 0.00 0.00 2.34
3467 4406 4.274602 TGCCAAGTGTAATTTCGTCCTA 57.725 40.909 0.00 0.00 0.00 2.94
3468 4407 3.134574 TGCCAAGTGTAATTTCGTCCT 57.865 42.857 0.00 0.00 0.00 3.85
3469 4408 3.907894 TTGCCAAGTGTAATTTCGTCC 57.092 42.857 0.00 0.00 0.00 4.79
3471 4410 5.465056 CCAAATTTGCCAAGTGTAATTTCGT 59.535 36.000 12.92 0.00 30.17 3.85
3472 4411 5.694006 TCCAAATTTGCCAAGTGTAATTTCG 59.306 36.000 12.92 0.00 30.17 3.46
3473 4412 7.671495 ATCCAAATTTGCCAAGTGTAATTTC 57.329 32.000 12.92 0.00 30.17 2.17
3474 4413 9.218440 CTAATCCAAATTTGCCAAGTGTAATTT 57.782 29.630 12.92 0.00 32.14 1.82
3475 4414 8.374743 ACTAATCCAAATTTGCCAAGTGTAATT 58.625 29.630 12.92 3.84 0.00 1.40
3476 4415 7.906327 ACTAATCCAAATTTGCCAAGTGTAAT 58.094 30.769 12.92 0.00 0.00 1.89
3478 4417 6.348950 CGACTAATCCAAATTTGCCAAGTGTA 60.349 38.462 12.92 0.00 0.00 2.90
3479 4418 5.564651 CGACTAATCCAAATTTGCCAAGTGT 60.565 40.000 12.92 6.65 0.00 3.55
3480 4419 4.858692 CGACTAATCCAAATTTGCCAAGTG 59.141 41.667 12.92 3.71 0.00 3.16
3481 4420 4.764823 TCGACTAATCCAAATTTGCCAAGT 59.235 37.500 12.92 11.90 0.00 3.16
3483 4422 4.764823 AGTCGACTAATCCAAATTTGCCAA 59.235 37.500 18.46 0.88 0.00 4.52
3484 4423 4.155826 CAGTCGACTAATCCAAATTTGCCA 59.844 41.667 19.57 1.64 0.00 4.92
3485 4424 4.394920 TCAGTCGACTAATCCAAATTTGCC 59.605 41.667 19.57 0.00 0.00 4.52
3498 4437 6.929049 ATGTTTTCATTTGAGTCAGTCGACTA 59.071 34.615 19.57 0.19 44.55 2.59
3499 4438 5.760253 ATGTTTTCATTTGAGTCAGTCGACT 59.240 36.000 13.58 13.58 46.07 4.18
3500 4439 5.403897 TGTTTTCATTTGAGTCAGTCGAC 57.596 39.130 7.70 7.70 42.95 4.20
3501 4440 7.905604 ATATGTTTTCATTTGAGTCAGTCGA 57.094 32.000 0.00 0.00 41.25 4.20
3502 4441 8.873830 ACTATATGTTTTCATTTGAGTCAGTCG 58.126 33.333 0.00 0.00 41.25 4.18
3536 4475 9.891828 GCACAATTTATATGTAAATCGAATGGA 57.108 29.630 7.78 0.00 39.09 3.41
3647 6637 4.418013 GCAAGGTTTTGTGCAAGTTTTT 57.582 36.364 0.00 0.00 40.58 1.94
3656 6646 5.500825 GCAATTTTAGTGCAAGGTTTTGTG 58.499 37.500 0.00 0.00 41.80 3.33
3657 6647 5.733226 GCAATTTTAGTGCAAGGTTTTGT 57.267 34.783 0.00 0.00 41.80 2.83
3668 6658 9.128107 CATACTACAAAAGGTGCAATTTTAGTG 57.872 33.333 16.65 8.26 0.00 2.74
3669 6659 7.812669 GCATACTACAAAAGGTGCAATTTTAGT 59.187 33.333 9.80 12.17 39.44 2.24
3670 6660 7.812191 TGCATACTACAAAAGGTGCAATTTTAG 59.188 33.333 9.80 8.04 43.57 1.85
3671 6661 7.661968 TGCATACTACAAAAGGTGCAATTTTA 58.338 30.769 9.80 0.00 43.57 1.52
3672 6662 6.520272 TGCATACTACAAAAGGTGCAATTTT 58.480 32.000 5.32 5.32 43.57 1.82
3673 6663 6.095432 TGCATACTACAAAAGGTGCAATTT 57.905 33.333 0.00 0.00 43.57 1.82
3674 6664 5.720371 TGCATACTACAAAAGGTGCAATT 57.280 34.783 0.00 0.00 43.57 2.32
3677 6667 5.521906 TTTTGCATACTACAAAAGGTGCA 57.478 34.783 0.00 0.00 44.31 4.57
3704 6694 9.982291 GAGTGCGAAATTTGAACTATTGTAATA 57.018 29.630 0.00 0.00 0.00 0.98
3707 6697 7.667043 AGAGTGCGAAATTTGAACTATTGTA 57.333 32.000 0.00 0.00 0.00 2.41
3708 6698 6.560253 AGAGTGCGAAATTTGAACTATTGT 57.440 33.333 0.00 0.00 0.00 2.71
3709 6699 7.743104 ACTAGAGTGCGAAATTTGAACTATTG 58.257 34.615 0.00 0.00 0.00 1.90
3710 6700 7.907214 ACTAGAGTGCGAAATTTGAACTATT 57.093 32.000 0.00 0.00 0.00 1.73
3712 6702 8.997621 AATACTAGAGTGCGAAATTTGAACTA 57.002 30.769 0.00 0.00 0.00 2.24
3720 6710 9.542462 TGCTTAAATAATACTAGAGTGCGAAAT 57.458 29.630 0.00 0.00 0.00 2.17
3721 6711 8.814235 GTGCTTAAATAATACTAGAGTGCGAAA 58.186 33.333 0.00 0.00 0.00 3.46
3722 6712 7.977293 TGTGCTTAAATAATACTAGAGTGCGAA 59.023 33.333 0.00 0.00 0.00 4.70
3723 6713 7.485810 TGTGCTTAAATAATACTAGAGTGCGA 58.514 34.615 0.00 0.00 0.00 5.10
3724 6714 7.694388 TGTGCTTAAATAATACTAGAGTGCG 57.306 36.000 0.00 0.00 0.00 5.34
3737 6727 9.119418 TAGGTACTACACGTATGTGCTTAAATA 57.881 33.333 15.12 0.00 45.46 1.40
3739 6729 7.389803 TAGGTACTACACGTATGTGCTTAAA 57.610 36.000 15.12 0.00 45.46 1.52
3831 6821 6.804677 ACAATTTCTTTGTACATTCTGTGCA 58.195 32.000 0.00 0.00 46.75 4.57
3910 6900 9.693739 TGCCACTAATTCATTCCTTATAAGAAA 57.306 29.630 14.28 0.00 0.00 2.52
3912 6902 9.866655 AATGCCACTAATTCATTCCTTATAAGA 57.133 29.630 14.28 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.