Multiple sequence alignment - TraesCS1D01G370000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G370000 chr1D 100.000 3892 0 0 3239 7130 448653706 448657597 0.000000e+00 7188.0
1 TraesCS1D01G370000 chr1D 100.000 2940 0 0 1 2940 448650468 448653407 0.000000e+00 5430.0
2 TraesCS1D01G370000 chr1D 100.000 53 0 0 6009 6061 448656423 448656475 1.640000e-16 99.0
3 TraesCS1D01G370000 chr1D 100.000 53 0 0 5956 6008 448656476 448656528 1.640000e-16 99.0
4 TraesCS1D01G370000 chr1B 95.061 2956 114 13 3300 6239 614453429 614456368 0.000000e+00 4621.0
5 TraesCS1D01G370000 chr1B 92.980 1225 57 9 1736 2933 614452017 614453239 0.000000e+00 1759.0
6 TraesCS1D01G370000 chr1B 94.190 568 20 7 1170 1736 614451314 614451869 0.000000e+00 854.0
7 TraesCS1D01G370000 chr1B 90.449 356 17 9 702 1042 614450653 614451006 3.030000e-123 453.0
8 TraesCS1D01G370000 chr1B 85.421 439 28 11 6695 7129 614456588 614456994 2.380000e-114 424.0
9 TraesCS1D01G370000 chr1B 94.792 192 9 1 6222 6413 614456393 614456583 1.500000e-76 298.0
10 TraesCS1D01G370000 chr1B 96.296 54 1 1 6009 6061 614456082 614456135 3.540000e-13 87.9
11 TraesCS1D01G370000 chr1B 96.226 53 2 0 5956 6008 614456136 614456188 3.540000e-13 87.9
12 TraesCS1D01G370000 chr1A 93.544 2308 103 24 4854 7130 544375675 544377967 0.000000e+00 3395.0
13 TraesCS1D01G370000 chr1A 94.241 1476 67 12 3242 4712 544373375 544374837 0.000000e+00 2239.0
14 TraesCS1D01G370000 chr1A 91.869 1193 61 9 1736 2897 544372121 544373308 0.000000e+00 1633.0
15 TraesCS1D01G370000 chr1A 93.898 590 33 3 1149 1736 544371385 544371973 0.000000e+00 887.0
16 TraesCS1D01G370000 chr1A 96.961 362 7 1 704 1065 544370622 544370979 7.910000e-169 604.0
17 TraesCS1D01G370000 chr1A 93.431 274 18 0 4462 4735 19275856 19275583 2.390000e-109 407.0
18 TraesCS1D01G370000 chr1A 100.000 53 0 0 5956 6008 544376834 544376886 1.640000e-16 99.0
19 TraesCS1D01G370000 chr1A 91.176 68 5 1 4794 4861 544375588 544375654 2.740000e-14 91.6
20 TraesCS1D01G370000 chr1A 96.296 54 1 1 6009 6061 544376780 544376833 3.540000e-13 87.9
21 TraesCS1D01G370000 chr7D 96.434 645 18 4 1 643 161921581 161920940 0.000000e+00 1059.0
22 TraesCS1D01G370000 chr7D 95.069 649 23 8 1 643 182825092 182825737 0.000000e+00 1013.0
23 TraesCS1D01G370000 chr7D 95.216 648 18 10 1 643 235517146 235517785 0.000000e+00 1013.0
24 TraesCS1D01G370000 chr7D 94.753 648 21 7 1 643 497977282 497976643 0.000000e+00 996.0
25 TraesCS1D01G370000 chr6D 96.440 646 16 5 1 643 99229986 99229345 0.000000e+00 1059.0
26 TraesCS1D01G370000 chr6D 94.900 647 26 6 1 643 37425862 37425219 0.000000e+00 1005.0
27 TraesCS1D01G370000 chr5D 95.370 648 24 6 1 643 367985546 367986192 0.000000e+00 1026.0
28 TraesCS1D01G370000 chr5D 94.892 646 25 7 1 643 332198404 332199044 0.000000e+00 1003.0
29 TraesCS1D01G370000 chr4D 94.582 646 28 6 1 643 469548 470189 0.000000e+00 992.0
30 TraesCS1D01G370000 chr3D 93.293 656 40 2 3674 4325 112210829 112210174 0.000000e+00 965.0
31 TraesCS1D01G370000 chr3D 92.308 299 23 0 3671 3969 96784082 96784380 6.610000e-115 425.0
32 TraesCS1D01G370000 chr3D 92.925 212 13 2 4328 4539 112210086 112209877 2.500000e-79 307.0
33 TraesCS1D01G370000 chr7B 95.620 274 12 0 4462 4735 126041004 126040731 2.360000e-119 440.0
34 TraesCS1D01G370000 chr3B 94.526 274 15 0 4462 4735 413315003 413315276 2.380000e-114 424.0
35 TraesCS1D01G370000 chr3B 95.038 262 13 0 4462 4723 725606858 725607119 5.150000e-111 412.0
36 TraesCS1D01G370000 chr3B 94.521 73 3 1 7055 7127 456863007 456863078 2.100000e-20 111.0
37 TraesCS1D01G370000 chr5A 94.030 268 16 0 4462 4729 603032351 603032618 2.390000e-109 407.0
38 TraesCS1D01G370000 chr5A 94.030 268 16 0 4462 4729 677628683 677628416 2.390000e-109 407.0
39 TraesCS1D01G370000 chr4B 93.066 274 19 0 4462 4735 232729863 232730136 1.110000e-107 401.0
40 TraesCS1D01G370000 chr2B 95.946 148 6 0 3822 3969 75660219 75660366 2.570000e-59 241.0
41 TraesCS1D01G370000 chr2B 94.595 148 8 0 3822 3969 56588208 56588061 5.560000e-56 230.0
42 TraesCS1D01G370000 chrUn 95.238 147 7 0 3822 3968 199439045 199439191 4.300000e-57 233.0
43 TraesCS1D01G370000 chrUn 95.238 147 7 0 3822 3968 237714460 237714606 4.300000e-57 233.0
44 TraesCS1D01G370000 chrUn 95.238 147 7 0 3822 3968 368390987 368391133 4.300000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G370000 chr1D 448650468 448657597 7129 False 3204.0000 7188 100.000000 1 7130 4 chr1D.!!$F1 7129
1 TraesCS1D01G370000 chr1B 614450653 614456994 6341 False 1073.1000 4621 93.176875 702 7129 8 chr1B.!!$F1 6427
2 TraesCS1D01G370000 chr1A 544370622 544377967 7345 False 1129.5625 3395 94.748125 704 7130 8 chr1A.!!$F1 6426
3 TraesCS1D01G370000 chr7D 161920940 161921581 641 True 1059.0000 1059 96.434000 1 643 1 chr7D.!!$R1 642
4 TraesCS1D01G370000 chr7D 182825092 182825737 645 False 1013.0000 1013 95.069000 1 643 1 chr7D.!!$F1 642
5 TraesCS1D01G370000 chr7D 235517146 235517785 639 False 1013.0000 1013 95.216000 1 643 1 chr7D.!!$F2 642
6 TraesCS1D01G370000 chr7D 497976643 497977282 639 True 996.0000 996 94.753000 1 643 1 chr7D.!!$R2 642
7 TraesCS1D01G370000 chr6D 99229345 99229986 641 True 1059.0000 1059 96.440000 1 643 1 chr6D.!!$R2 642
8 TraesCS1D01G370000 chr6D 37425219 37425862 643 True 1005.0000 1005 94.900000 1 643 1 chr6D.!!$R1 642
9 TraesCS1D01G370000 chr5D 367985546 367986192 646 False 1026.0000 1026 95.370000 1 643 1 chr5D.!!$F2 642
10 TraesCS1D01G370000 chr5D 332198404 332199044 640 False 1003.0000 1003 94.892000 1 643 1 chr5D.!!$F1 642
11 TraesCS1D01G370000 chr4D 469548 470189 641 False 992.0000 992 94.582000 1 643 1 chr4D.!!$F1 642
12 TraesCS1D01G370000 chr3D 112209877 112210829 952 True 636.0000 965 93.109000 3674 4539 2 chr3D.!!$R1 865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
634 651 0.325296 ACTGGAGTCCAATCGGCCTA 60.325 55.0 14.17 0.0 30.80 3.93 F
1441 1800 0.565674 AGGGTTTTGGGGATGTTGGT 59.434 50.0 0.00 0.0 0.00 3.67 F
2811 3352 0.464373 AAGCTATGCACCACCATCCG 60.464 55.0 0.00 0.0 0.00 4.18 F
3432 3974 0.545071 TGATGCTGGACAGGTGGAGA 60.545 55.0 1.01 0.0 0.00 3.71 F
3551 4093 1.055849 TGTAGCTGGTCTTGGAAGCA 58.944 50.0 0.00 0.0 39.47 3.91 F
5421 6763 0.393132 GTCTTAGCTTGACCCCAGCC 60.393 60.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1902 0.989890 GTGTCGCTTGCTTACCTACG 59.010 55.000 0.00 0.0 0.00 3.51 R
3253 3795 1.108776 GCATCCAGCAACCATCATGT 58.891 50.000 0.00 0.0 44.79 3.21 R
3868 4410 0.741915 TGGGCTCGTCCAAACAAAAC 59.258 50.000 0.00 0.0 36.21 2.43 R
5421 6763 2.002586 CGGTCCTCAAGCACAGTTATG 58.997 52.381 0.00 0.0 0.00 1.90 R
5434 6776 2.033151 CGTTTTCTTTCACACGGTCCTC 60.033 50.000 0.00 0.0 0.00 3.71 R
6659 8073 0.031585 TCCGTTTCCGTCAGTGACAG 59.968 55.000 22.66 12.1 32.09 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.364324 TCATACTTAGGTCCGTGATGCC 59.636 50.000 0.00 0.00 0.00 4.40
53 54 1.761174 GTCCGTGATGCCCCCATAT 59.239 57.895 0.00 0.00 0.00 1.78
543 555 4.142609 TGCAAAAACAATTAGCCCACAA 57.857 36.364 0.00 0.00 0.00 3.33
605 622 3.976490 TAGGGGCCAGTCGTCCAGG 62.976 68.421 4.39 0.00 0.00 4.45
634 651 0.325296 ACTGGAGTCCAATCGGCCTA 60.325 55.000 14.17 0.00 30.80 3.93
865 894 4.194720 AGCCGTCATCGACCGAGC 62.195 66.667 0.00 0.00 39.71 5.03
867 896 4.570663 CCGTCATCGACCGAGCCC 62.571 72.222 0.00 0.00 39.71 5.19
868 897 3.822192 CGTCATCGACCGAGCCCA 61.822 66.667 0.00 0.00 39.71 5.36
1065 1099 4.803426 CTCTCCCACGCGCTCACC 62.803 72.222 5.73 0.00 0.00 4.02
1090 1124 3.866582 CCGAGGAGGTCATGGGCC 61.867 72.222 0.00 0.00 34.51 5.80
1091 1125 2.765807 CGAGGAGGTCATGGGCCT 60.766 66.667 4.53 9.08 39.42 5.19
1095 1129 3.235369 GAGGTCATGGGCCTCCTC 58.765 66.667 19.96 16.78 45.05 3.71
1096 1130 2.367512 AGGTCATGGGCCTCCTCC 60.368 66.667 4.53 2.56 0.00 4.30
1097 1131 2.367512 GGTCATGGGCCTCCTCCT 60.368 66.667 4.53 0.00 0.00 3.69
1098 1132 2.447714 GGTCATGGGCCTCCTCCTC 61.448 68.421 4.53 0.00 0.00 3.71
1099 1133 2.444706 TCATGGGCCTCCTCCTCG 60.445 66.667 4.53 0.00 0.00 4.63
1100 1134 3.554342 CATGGGCCTCCTCCTCGG 61.554 72.222 4.53 0.00 0.00 4.63
1137 1171 4.825679 CCTCCCCTCCCCTCCCAC 62.826 77.778 0.00 0.00 0.00 4.61
1138 1172 4.825679 CTCCCCTCCCCTCCCACC 62.826 77.778 0.00 0.00 0.00 4.61
1140 1174 3.373846 CCCCTCCCCTCCCACCTA 61.374 72.222 0.00 0.00 0.00 3.08
1141 1175 2.040779 CCCTCCCCTCCCACCTAC 60.041 72.222 0.00 0.00 0.00 3.18
1142 1176 2.040779 CCTCCCCTCCCACCTACC 60.041 72.222 0.00 0.00 0.00 3.18
1143 1177 2.040779 CTCCCCTCCCACCTACCC 60.041 72.222 0.00 0.00 0.00 3.69
1144 1178 4.084147 TCCCCTCCCACCTACCCG 62.084 72.222 0.00 0.00 0.00 5.28
1145 1179 4.410033 CCCCTCCCACCTACCCGT 62.410 72.222 0.00 0.00 0.00 5.28
1146 1180 2.285144 CCCTCCCACCTACCCGTT 60.285 66.667 0.00 0.00 0.00 4.44
1147 1181 2.364780 CCCTCCCACCTACCCGTTC 61.365 68.421 0.00 0.00 0.00 3.95
1380 1739 0.824759 CTCCCCCAGTTAGTTCCTCG 59.175 60.000 0.00 0.00 0.00 4.63
1389 1748 3.621715 CAGTTAGTTCCTCGGTATTTGGC 59.378 47.826 0.00 0.00 0.00 4.52
1403 1762 3.771568 TTGGCGTGTTTGCTGCTGC 62.772 57.895 8.89 8.89 40.20 5.25
1412 1771 2.752322 TTTGCTGCTGCGTGGATTGC 62.752 55.000 11.21 0.00 43.34 3.56
1441 1800 0.565674 AGGGTTTTGGGGATGTTGGT 59.434 50.000 0.00 0.00 0.00 3.67
1443 1802 1.482365 GGGTTTTGGGGATGTTGGTCT 60.482 52.381 0.00 0.00 0.00 3.85
1543 1902 1.302832 CACTGTCCTGCCTTCCCAC 60.303 63.158 0.00 0.00 0.00 4.61
1558 1917 1.082117 CCCACGTAGGTAAGCAAGCG 61.082 60.000 0.00 0.00 34.66 4.68
1602 1961 0.692476 TCTATTGTGTGCCCACTGCT 59.308 50.000 0.00 0.00 42.34 4.24
1690 2049 0.944386 ACAAACCTGTGACGTGATGC 59.056 50.000 0.00 0.00 33.30 3.91
1691 2050 1.229428 CAAACCTGTGACGTGATGCT 58.771 50.000 0.00 0.00 0.00 3.79
1813 2323 3.521727 ACTGTCCTGAATACAAGGGTCT 58.478 45.455 0.00 0.00 0.00 3.85
1891 2401 5.143376 AGTGCATCTGCTTTTATGCTTTT 57.857 34.783 8.57 0.00 46.87 2.27
2071 2604 4.695606 AGGTTACTTCCTATCTGGGACAA 58.304 43.478 0.00 0.00 34.74 3.18
2089 2622 5.477510 GGACAATTATGCATGGTTTTGTCA 58.522 37.500 27.84 3.06 42.81 3.58
2090 2623 6.108015 GGACAATTATGCATGGTTTTGTCAT 58.892 36.000 27.84 9.36 42.81 3.06
2216 2749 7.558444 TGTTATTACCAATCCAGTCATTAACCC 59.442 37.037 0.00 0.00 0.00 4.11
2230 2763 3.449746 TTAACCCTGAACCATCTTGGG 57.550 47.619 0.00 0.00 43.37 4.12
2415 2948 6.876257 GGGGTGTTGATTATCACTCTATCATC 59.124 42.308 0.00 0.00 35.61 2.92
2439 2972 3.491766 TTCTTCCCTACTGGATGGAGT 57.508 47.619 0.00 0.00 44.66 3.85
2525 3058 6.150976 TGTTGCTATCGTTTTTGGATCAAGAT 59.849 34.615 0.00 0.00 0.00 2.40
2530 3063 9.042008 GCTATCGTTTTTGGATCAAGATAACTA 57.958 33.333 0.00 0.00 0.00 2.24
2572 3110 8.918202 TTGAGCCTTTACTCTTTTGATTAGAA 57.082 30.769 0.00 0.00 37.58 2.10
2695 3233 7.396339 TCTTAGACTGGAAAGCTTGACTACATA 59.604 37.037 0.00 0.00 0.00 2.29
2811 3352 0.464373 AAGCTATGCACCACCATCCG 60.464 55.000 0.00 0.00 0.00 4.18
2819 3360 2.438434 CCACCATCCGACCCAAGC 60.438 66.667 0.00 0.00 0.00 4.01
2898 3440 5.464965 TCGCAATCGTCTATTTTTCCTTC 57.535 39.130 0.00 0.00 36.96 3.46
2938 3480 7.910304 CACAATCTAAGTGTGCTAAATCTACC 58.090 38.462 0.00 0.00 39.93 3.18
2939 3481 6.757010 ACAATCTAAGTGTGCTAAATCTACCG 59.243 38.462 0.00 0.00 0.00 4.02
3257 3799 2.443887 CCCTTGGCAAGTTCAACATG 57.556 50.000 24.57 7.58 0.00 3.21
3258 3800 1.962807 CCCTTGGCAAGTTCAACATGA 59.037 47.619 24.57 0.00 0.00 3.07
3259 3801 2.564062 CCCTTGGCAAGTTCAACATGAT 59.436 45.455 24.57 0.00 0.00 2.45
3260 3802 3.581755 CCTTGGCAAGTTCAACATGATG 58.418 45.455 24.57 0.00 0.00 3.07
3261 3803 3.581755 CTTGGCAAGTTCAACATGATGG 58.418 45.455 19.07 0.00 0.00 3.51
3262 3804 2.596346 TGGCAAGTTCAACATGATGGT 58.404 42.857 0.00 0.00 0.00 3.55
3297 3839 8.608317 GCTGAATCTCTAAAATTCTAGTGGTTC 58.392 37.037 6.84 6.84 34.93 3.62
3301 3843 7.463961 TCTCTAAAATTCTAGTGGTTCGAGT 57.536 36.000 0.00 0.00 0.00 4.18
3306 3848 7.886405 AAAATTCTAGTGGTTCGAGTACTTC 57.114 36.000 0.00 0.00 0.00 3.01
3370 3912 2.930040 TGGCGAGAAAAGATAGAAAGCG 59.070 45.455 0.00 0.00 0.00 4.68
3432 3974 0.545071 TGATGCTGGACAGGTGGAGA 60.545 55.000 1.01 0.00 0.00 3.71
3551 4093 1.055849 TGTAGCTGGTCTTGGAAGCA 58.944 50.000 0.00 0.00 39.47 3.91
3598 4140 4.775236 AGACATTATGTTCAGGGAGCTTC 58.225 43.478 0.00 0.00 0.00 3.86
3784 4326 9.149225 GCAACCAAATGATAGAGTAGATATCTG 57.851 37.037 15.79 0.00 32.02 2.90
3828 4370 5.968387 GGTAACAAACTGACGGATAGATG 57.032 43.478 0.00 0.00 0.00 2.90
3868 4410 5.233476 TGAAGCACACTTAACTGTTTCTACG 59.767 40.000 0.00 0.00 35.82 3.51
3952 4494 8.527567 TGTTAATTGCTTATGTAAAAGTTGCC 57.472 30.769 0.00 0.00 0.00 4.52
4052 4594 2.028112 TCAGTGCACTATTCTGTGGGTC 60.028 50.000 21.20 0.00 38.31 4.46
4116 4658 2.266279 TGTTTCTAGGTCTGGGGAAGG 58.734 52.381 0.00 0.00 0.00 3.46
4539 5170 2.496070 TGGTGCTACAGTCACATACTCC 59.504 50.000 0.00 0.00 35.76 3.85
4664 5298 8.810652 TTTGGCAATGTTCTTTTATGAGTAAC 57.189 30.769 0.00 0.00 0.00 2.50
4668 5302 6.580791 GCAATGTTCTTTTATGAGTAACGCAA 59.419 34.615 0.00 0.00 0.00 4.85
4685 5319 9.044150 AGTAACGCAATATTAACGCCTAAAATA 57.956 29.630 9.32 0.00 0.00 1.40
4726 5387 8.272545 TGTTGTCTTTAGGATGATGAGATTTG 57.727 34.615 0.00 0.00 0.00 2.32
4727 5388 7.884877 TGTTGTCTTTAGGATGATGAGATTTGT 59.115 33.333 0.00 0.00 0.00 2.83
4728 5389 8.394121 GTTGTCTTTAGGATGATGAGATTTGTC 58.606 37.037 0.00 0.00 0.00 3.18
4729 5390 7.855375 TGTCTTTAGGATGATGAGATTTGTCT 58.145 34.615 0.00 0.00 0.00 3.41
4730 5391 7.767659 TGTCTTTAGGATGATGAGATTTGTCTG 59.232 37.037 0.00 0.00 0.00 3.51
4731 5392 7.226325 GTCTTTAGGATGATGAGATTTGTCTGG 59.774 40.741 0.00 0.00 0.00 3.86
4732 5393 6.813293 TTAGGATGATGAGATTTGTCTGGA 57.187 37.500 0.00 0.00 0.00 3.86
4733 5394 5.705397 AGGATGATGAGATTTGTCTGGAA 57.295 39.130 0.00 0.00 0.00 3.53
4734 5395 6.263412 AGGATGATGAGATTTGTCTGGAAT 57.737 37.500 0.00 0.00 0.00 3.01
4735 5396 6.670617 AGGATGATGAGATTTGTCTGGAATT 58.329 36.000 0.00 0.00 0.00 2.17
4736 5397 6.771749 AGGATGATGAGATTTGTCTGGAATTC 59.228 38.462 0.00 0.00 0.00 2.17
4786 5447 7.282585 TGGACTTGGATCGAATTCTCATATTT 58.717 34.615 3.52 0.00 0.00 1.40
4814 6127 5.306394 AGTCCTTTAGTGTTGTTCTAAGCC 58.694 41.667 0.00 0.00 0.00 4.35
4824 6137 4.249661 GTTGTTCTAAGCCTCTTCTCCTG 58.750 47.826 0.00 0.00 0.00 3.86
4830 6143 5.273208 TCTAAGCCTCTTCTCCTGTACAAT 58.727 41.667 0.00 0.00 0.00 2.71
4862 6175 8.676401 TGTGATTTACAGTTACAATCATCATGG 58.324 33.333 0.00 0.00 38.77 3.66
4863 6176 7.645340 GTGATTTACAGTTACAATCATCATGGC 59.355 37.037 0.00 0.00 38.77 4.40
4947 6287 1.535028 TGCTGTGCTTTAACATGACGG 59.465 47.619 0.00 0.00 0.00 4.79
5090 6432 2.345876 TGTGATATGCAACGTGTCCTG 58.654 47.619 0.00 0.00 0.00 3.86
5193 6535 2.109511 TCAGGATGCTTGGTCTCACCA 61.110 52.381 0.00 0.00 41.28 4.17
5354 6696 6.540189 TCTTCTTCTGCTTATCCAAATACAGC 59.460 38.462 0.00 0.00 0.00 4.40
5390 6732 5.236478 GTGTGTAATCGGCTGCTAACATATT 59.764 40.000 0.00 0.00 0.00 1.28
5421 6763 0.393132 GTCTTAGCTTGACCCCAGCC 60.393 60.000 0.00 0.00 0.00 4.85
5434 6776 0.813184 CCCAGCCATAACTGTGCTTG 59.187 55.000 0.00 0.00 35.83 4.01
5753 7098 0.957395 ACCTTGCTCGCCATTCTGTG 60.957 55.000 0.00 0.00 0.00 3.66
5774 7119 5.047731 TGTGATGATGGATAGTCCGATTCTC 60.048 44.000 0.00 0.00 40.17 2.87
5816 7161 0.187606 AACCCCAAACCTGTCCCTTC 59.812 55.000 0.00 0.00 0.00 3.46
6172 7519 5.005779 GTGATCTCTAATGTTAACAGCCGTG 59.994 44.000 14.65 4.65 0.00 4.94
6194 7541 2.783288 GGACGATGGGACTCGGACC 61.783 68.421 0.00 0.00 42.88 4.46
6246 7638 2.706190 ACTTGTCCCACTCTAACTGCTT 59.294 45.455 0.00 0.00 0.00 3.91
6309 7702 1.005805 AGCAACATGACAAGGGCCATA 59.994 47.619 6.18 0.00 0.00 2.74
6320 7713 0.844661 AGGGCCATACAACCACTCCA 60.845 55.000 6.18 0.00 0.00 3.86
6388 7781 1.176619 ACGATCGACCTGGACACACA 61.177 55.000 24.34 0.00 0.00 3.72
6418 7811 4.699522 GCCGGAGCCGACAAAGGT 62.700 66.667 5.05 0.00 42.83 3.50
6421 7814 2.380410 CGGAGCCGACAAAGGTTCG 61.380 63.158 2.00 0.00 41.67 3.95
6456 7849 1.999289 GATCGTCGCGTCGCTGTAG 60.999 63.158 20.62 4.18 0.00 2.74
6457 7850 4.806481 TCGTCGCGTCGCTGTAGC 62.806 66.667 20.62 0.00 37.78 3.58
6462 7855 2.772189 GCGTCGCTGTAGCAGTTG 59.228 61.111 10.68 0.00 42.21 3.16
6493 7886 0.108472 GTACGGGCTCACCAAGGTAC 60.108 60.000 0.00 0.00 40.22 3.34
6494 7887 1.597797 TACGGGCTCACCAAGGTACG 61.598 60.000 0.00 0.00 40.22 3.67
6495 7888 2.436115 GGGCTCACCAAGGTACGC 60.436 66.667 0.00 0.00 39.85 4.42
6496 7889 2.345991 GGCTCACCAAGGTACGCA 59.654 61.111 12.17 0.00 35.26 5.24
6497 7890 1.302192 GGCTCACCAAGGTACGCAA 60.302 57.895 12.17 0.00 35.26 4.85
6498 7891 0.887387 GGCTCACCAAGGTACGCAAA 60.887 55.000 12.17 0.00 35.26 3.68
6499 7892 0.517316 GCTCACCAAGGTACGCAAAG 59.483 55.000 6.96 0.00 0.00 2.77
6500 7893 0.517316 CTCACCAAGGTACGCAAAGC 59.483 55.000 0.00 0.00 0.00 3.51
6501 7894 0.887387 TCACCAAGGTACGCAAAGCC 60.887 55.000 0.00 0.00 0.00 4.35
6527 7920 4.446413 CGTACACGCCACCCTCCC 62.446 72.222 0.00 0.00 0.00 4.30
6528 7921 4.446413 GTACACGCCACCCTCCCG 62.446 72.222 0.00 0.00 0.00 5.14
6569 7983 3.569049 AACGTTCCGGCTGGACTCG 62.569 63.158 26.73 26.73 46.45 4.18
6570 7984 4.796231 CGTTCCGGCTGGACTCGG 62.796 72.222 15.79 1.24 46.45 4.63
6636 8050 3.490078 GCGTCCTTGTTTGAATTGAACCA 60.490 43.478 0.00 0.00 0.00 3.67
6637 8051 4.795962 GCGTCCTTGTTTGAATTGAACCAT 60.796 41.667 0.00 0.00 0.00 3.55
6663 8077 3.418068 GCGTGCTGTCAGCCTGTC 61.418 66.667 21.99 8.94 41.51 3.51
6664 8078 2.029518 CGTGCTGTCAGCCTGTCA 59.970 61.111 21.99 0.00 41.51 3.58
6688 8102 2.361230 GAAACGGAAGGGCCTGGG 60.361 66.667 6.92 1.29 0.00 4.45
6744 8158 2.338620 CTGACAGCGACGGGTGAA 59.661 61.111 0.00 0.00 44.37 3.18
6765 8179 6.703607 GTGAACAGAGTAGATTATCACCATGG 59.296 42.308 11.19 11.19 31.81 3.66
6800 8214 2.874457 GCGGCCATATCCTATCCGTTTT 60.874 50.000 2.24 0.00 41.89 2.43
6809 8223 7.014230 CCATATCCTATCCGTTTTGGTTTTCAT 59.986 37.037 0.00 0.00 39.52 2.57
6872 8290 1.003704 TTTCCCCTCCCGCTCCATA 59.996 57.895 0.00 0.00 0.00 2.74
6876 8297 0.036875 CCCCTCCCGCTCCATAAATC 59.963 60.000 0.00 0.00 0.00 2.17
6986 8410 2.874780 GCGACGCGTAGACACAGG 60.875 66.667 23.92 1.44 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.961180 GCTCCGGATCCGATATGGGG 61.961 65.000 35.42 18.80 42.83 4.96
53 54 2.043349 TTCCAGCTCCGGATCCGA 60.043 61.111 35.42 19.41 42.83 4.55
600 617 1.982395 CAGTCGGCCTACACCTGGA 60.982 63.158 10.45 0.00 0.00 3.86
605 622 1.511768 GACTCCAGTCGGCCTACAC 59.488 63.158 10.45 0.00 35.12 2.90
691 708 3.629398 CCGCAGATCTGAGGCTAATTTTT 59.371 43.478 29.31 0.00 43.27 1.94
692 709 3.209410 CCGCAGATCTGAGGCTAATTTT 58.791 45.455 29.31 0.00 43.27 1.82
693 710 2.843701 CCGCAGATCTGAGGCTAATTT 58.156 47.619 29.31 0.00 43.27 1.82
694 711 2.540265 CCGCAGATCTGAGGCTAATT 57.460 50.000 29.31 0.00 43.27 1.40
866 895 4.065281 GTCGGTCGGAGTGGGTGG 62.065 72.222 0.00 0.00 0.00 4.61
867 896 4.065281 GGTCGGTCGGAGTGGGTG 62.065 72.222 0.00 0.00 0.00 4.61
1065 1099 2.361357 ACCTCCTCGGTCTCCGTG 60.361 66.667 8.03 5.75 44.93 4.94
1073 1107 3.866582 GGCCCATGACCTCCTCGG 61.867 72.222 0.00 0.00 39.35 4.63
1074 1108 2.765807 AGGCCCATGACCTCCTCG 60.766 66.667 0.00 0.00 28.76 4.63
1075 1109 3.235369 GAGGCCCATGACCTCCTC 58.765 66.667 19.04 12.81 46.81 3.71
1079 1113 2.367512 GGAGGAGGCCCATGACCT 60.368 66.667 0.00 6.94 41.41 3.85
1080 1114 2.367512 AGGAGGAGGCCCATGACC 60.368 66.667 0.00 0.00 33.88 4.02
1081 1115 2.801631 CGAGGAGGAGGCCCATGAC 61.802 68.421 0.00 0.00 33.88 3.06
1082 1116 2.444706 CGAGGAGGAGGCCCATGA 60.445 66.667 0.00 0.00 33.88 3.07
1083 1117 3.554342 CCGAGGAGGAGGCCCATG 61.554 72.222 0.00 0.00 45.00 3.66
1090 1124 3.878519 GACGTCGCCGAGGAGGAG 61.879 72.222 14.36 0.00 45.00 3.69
1093 1127 4.813526 CACGACGTCGCCGAGGAG 62.814 72.222 35.92 14.17 44.43 3.69
1096 1130 4.695231 AACCACGACGTCGCCGAG 62.695 66.667 35.92 23.47 44.43 4.63
1097 1131 4.688419 GAACCACGACGTCGCCGA 62.688 66.667 35.92 0.00 44.43 5.54
1120 1154 4.825679 GTGGGAGGGGAGGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
1121 1155 4.825679 GGTGGGAGGGGAGGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
1122 1156 3.961901 TAGGTGGGAGGGGAGGGGA 62.962 68.421 0.00 0.00 0.00 4.81
1123 1157 3.373846 TAGGTGGGAGGGGAGGGG 61.374 72.222 0.00 0.00 0.00 4.79
1124 1158 2.040779 GTAGGTGGGAGGGGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
1125 1159 2.040779 GGTAGGTGGGAGGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
1126 1160 2.040779 GGGTAGGTGGGAGGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
1127 1161 4.084147 CGGGTAGGTGGGAGGGGA 62.084 72.222 0.00 0.00 0.00 4.81
1128 1162 3.937372 AACGGGTAGGTGGGAGGGG 62.937 68.421 0.00 0.00 0.00 4.79
1129 1163 2.285144 AACGGGTAGGTGGGAGGG 60.285 66.667 0.00 0.00 0.00 4.30
1130 1164 2.364780 GGAACGGGTAGGTGGGAGG 61.365 68.421 0.00 0.00 0.00 4.30
1131 1165 2.364780 GGGAACGGGTAGGTGGGAG 61.365 68.421 0.00 0.00 0.00 4.30
1132 1166 2.284847 GGGAACGGGTAGGTGGGA 60.285 66.667 0.00 0.00 0.00 4.37
1133 1167 3.405318 GGGGAACGGGTAGGTGGG 61.405 72.222 0.00 0.00 0.00 4.61
1134 1168 2.285144 AGGGGAACGGGTAGGTGG 60.285 66.667 0.00 0.00 0.00 4.61
1135 1169 2.364780 GGAGGGGAACGGGTAGGTG 61.365 68.421 0.00 0.00 0.00 4.00
1136 1170 2.040114 GGAGGGGAACGGGTAGGT 59.960 66.667 0.00 0.00 0.00 3.08
1137 1171 2.767073 GGGAGGGGAACGGGTAGG 60.767 72.222 0.00 0.00 0.00 3.18
1138 1172 2.767073 GGGGAGGGGAACGGGTAG 60.767 72.222 0.00 0.00 0.00 3.18
1139 1173 3.286725 AGGGGAGGGGAACGGGTA 61.287 66.667 0.00 0.00 0.00 3.69
1140 1174 4.735599 GAGGGGAGGGGAACGGGT 62.736 72.222 0.00 0.00 0.00 5.28
1166 1522 1.667154 CTCAGACATTCGCGAGGGGA 61.667 60.000 9.59 0.00 0.00 4.81
1380 1739 1.696988 CAGCAAACACGCCAAATACC 58.303 50.000 0.00 0.00 0.00 2.73
1389 1748 2.723271 CACGCAGCAGCAAACACG 60.723 61.111 0.82 0.00 42.27 4.49
1403 1762 1.390123 CTACTGTCAACGCAATCCACG 59.610 52.381 0.00 0.00 0.00 4.94
1412 1771 1.877443 CCCAAAACCCTACTGTCAACG 59.123 52.381 0.00 0.00 0.00 4.10
1441 1800 3.936372 ACGTGCTAGCAGAGTTAAAGA 57.064 42.857 20.03 0.00 0.00 2.52
1443 1802 5.575606 GTCATTACGTGCTAGCAGAGTTAAA 59.424 40.000 24.97 16.85 0.00 1.52
1469 1828 1.608336 TCGTCTTCCCGATGGTGGT 60.608 57.895 0.00 0.00 30.63 4.16
1543 1902 0.989890 GTGTCGCTTGCTTACCTACG 59.010 55.000 0.00 0.00 0.00 3.51
1558 1917 1.062587 CAATGCGAGGGAATTCGTGTC 59.937 52.381 0.00 0.00 42.38 3.67
1602 1961 2.875672 GCATAGTGAAACACAGCCCTGA 60.876 50.000 1.69 0.00 41.43 3.86
1691 2050 9.278978 TCAAACTGCATAGACAAAAACTATGTA 57.721 29.630 13.79 9.89 44.96 2.29
1813 2323 6.354130 GTCAATTGGTTAGGAGCCAGTAATA 58.646 40.000 5.42 0.00 37.31 0.98
2089 2622 5.745294 GCAACATCAAAATACGATTCAGCAT 59.255 36.000 0.00 0.00 0.00 3.79
2090 2623 5.094812 GCAACATCAAAATACGATTCAGCA 58.905 37.500 0.00 0.00 0.00 4.41
2230 2763 5.297547 TGCTAATGAGTTATCGGATGAACC 58.702 41.667 0.00 0.00 0.00 3.62
2325 2858 3.266636 TGCTGTAATACCACAACATCCG 58.733 45.455 0.00 0.00 0.00 4.18
2424 2957 6.494666 TTAAACATACTCCATCCAGTAGGG 57.505 41.667 0.00 0.00 35.40 3.53
2439 2972 5.031066 AGTAGGCGCCAGATTTAAACATA 57.969 39.130 31.54 4.10 0.00 2.29
2558 3096 7.436673 CCGTGACCTCTATTCTAATCAAAAGAG 59.563 40.741 0.00 0.00 0.00 2.85
2572 3110 2.510382 TCTTCTCTCCCGTGACCTCTAT 59.490 50.000 0.00 0.00 0.00 1.98
2695 3233 9.143155 ACTTTTGAGGGTTAACATTTAGTGAAT 57.857 29.630 8.10 0.00 0.00 2.57
2811 3352 2.102252 TGTTCAACCATTTGCTTGGGTC 59.898 45.455 5.99 0.00 41.35 4.46
2819 3360 5.473504 AGCCTACTTACTGTTCAACCATTTG 59.526 40.000 0.00 0.00 0.00 2.32
2904 3446 6.005583 CACACTTAGATTGTGCTGAACATT 57.994 37.500 0.00 0.00 38.99 2.71
3238 3780 1.962807 TCATGTTGAACTTGCCAAGGG 59.037 47.619 9.64 0.00 0.00 3.95
3239 3781 3.581755 CATCATGTTGAACTTGCCAAGG 58.418 45.455 9.64 0.00 0.00 3.61
3240 3782 3.006110 ACCATCATGTTGAACTTGCCAAG 59.994 43.478 2.11 2.11 0.00 3.61
3241 3783 2.964464 ACCATCATGTTGAACTTGCCAA 59.036 40.909 5.30 0.00 0.00 4.52
3242 3784 2.596346 ACCATCATGTTGAACTTGCCA 58.404 42.857 5.30 0.00 0.00 4.92
3243 3785 3.319755 CAACCATCATGTTGAACTTGCC 58.680 45.455 5.30 0.00 46.77 4.52
3244 3786 2.733026 GCAACCATCATGTTGAACTTGC 59.267 45.455 8.01 10.44 46.77 4.01
3245 3787 3.985279 CAGCAACCATCATGTTGAACTTG 59.015 43.478 8.01 4.97 46.77 3.16
3246 3788 3.006110 CCAGCAACCATCATGTTGAACTT 59.994 43.478 8.01 0.00 46.77 2.66
3247 3789 2.559668 CCAGCAACCATCATGTTGAACT 59.440 45.455 8.01 0.00 46.77 3.01
3248 3790 2.557924 TCCAGCAACCATCATGTTGAAC 59.442 45.455 8.01 0.00 46.77 3.18
3249 3791 2.874014 TCCAGCAACCATCATGTTGAA 58.126 42.857 8.01 0.00 46.77 2.69
3250 3792 2.583024 TCCAGCAACCATCATGTTGA 57.417 45.000 8.01 0.00 46.77 3.18
3251 3793 2.737359 GCATCCAGCAACCATCATGTTG 60.737 50.000 0.00 0.00 46.59 3.33
3252 3794 1.479323 GCATCCAGCAACCATCATGTT 59.521 47.619 0.00 0.00 44.79 2.71
3253 3795 1.108776 GCATCCAGCAACCATCATGT 58.891 50.000 0.00 0.00 44.79 3.21
3254 3796 3.959478 GCATCCAGCAACCATCATG 57.041 52.632 0.00 0.00 44.79 3.07
3297 3839 8.858003 TTATTTCAGCTCATAAGAAGTACTCG 57.142 34.615 0.00 0.00 0.00 4.18
3301 3843 8.494433 ACCCATTATTTCAGCTCATAAGAAGTA 58.506 33.333 0.00 0.00 0.00 2.24
3306 3848 7.284034 AGTTGACCCATTATTTCAGCTCATAAG 59.716 37.037 0.00 0.00 0.00 1.73
3370 3912 8.184192 CCCAATGAAATAGTTGTCATAGTTCAC 58.816 37.037 0.00 0.00 39.27 3.18
3432 3974 5.818678 TGACATGTTACTTACTGGTTCCT 57.181 39.130 0.00 0.00 0.00 3.36
3551 4093 7.553334 TCTACTAGGTTGTTTCATATTCGCTT 58.447 34.615 0.00 0.00 0.00 4.68
3640 4182 6.402983 GCAGGTGTCAGTTTTATCATCAGAAG 60.403 42.308 0.00 0.00 0.00 2.85
3649 4191 4.910195 TGATCAGCAGGTGTCAGTTTTAT 58.090 39.130 0.00 0.00 0.00 1.40
3784 4326 9.928236 TTACCACGTTTACAAAAACATTAGTAC 57.072 29.630 0.00 0.00 44.37 2.73
3828 4370 6.361748 GTGTGCTTCATTGTTCTGAATTTCTC 59.638 38.462 0.00 0.00 34.76 2.87
3868 4410 0.741915 TGGGCTCGTCCAAACAAAAC 59.258 50.000 0.00 0.00 36.21 2.43
3952 4494 3.018856 TCAATGGAGCAGCATAAACCAG 58.981 45.455 0.00 0.00 34.08 4.00
4101 4643 1.007238 TGAGACCTTCCCCAGACCTAG 59.993 57.143 0.00 0.00 0.00 3.02
4116 4658 7.147915 GGAGAATACAGATCCATATCCTGAGAC 60.148 44.444 0.00 0.00 33.08 3.36
4539 5170 4.052608 GTTTGTTTTAACATGGAACCCGG 58.947 43.478 0.00 0.00 38.95 5.73
4664 5298 9.269415 GGTAATATTTTAGGCGTTAATATTGCG 57.731 33.333 19.14 4.18 37.54 4.85
4685 5319 3.304829 ACAACAAAGCCTGGTTGGTAAT 58.695 40.909 7.48 0.00 46.56 1.89
4726 5387 8.797438 AGTTCAAAATCCTAAAGAATTCCAGAC 58.203 33.333 0.65 0.00 0.00 3.51
4727 5388 8.940397 AGTTCAAAATCCTAAAGAATTCCAGA 57.060 30.769 0.65 0.00 0.00 3.86
4730 5391 9.574458 GCTTAGTTCAAAATCCTAAAGAATTCC 57.426 33.333 0.65 0.00 0.00 3.01
4731 5392 9.278734 CGCTTAGTTCAAAATCCTAAAGAATTC 57.721 33.333 0.00 0.00 0.00 2.17
4732 5393 8.793592 ACGCTTAGTTCAAAATCCTAAAGAATT 58.206 29.630 0.00 0.00 0.00 2.17
4733 5394 8.336801 ACGCTTAGTTCAAAATCCTAAAGAAT 57.663 30.769 0.00 0.00 0.00 2.40
4734 5395 7.739498 ACGCTTAGTTCAAAATCCTAAAGAA 57.261 32.000 0.00 0.00 0.00 2.52
4735 5396 8.836268 TTACGCTTAGTTCAAAATCCTAAAGA 57.164 30.769 0.00 0.00 0.00 2.52
4736 5397 9.490663 CATTACGCTTAGTTCAAAATCCTAAAG 57.509 33.333 0.00 0.00 0.00 1.85
4747 5408 4.020928 TCCAAGTCCATTACGCTTAGTTCA 60.021 41.667 0.00 0.00 0.00 3.18
4786 5447 9.760077 CTTAGAACAACACTAAAGGACTCTTTA 57.240 33.333 0.00 0.00 42.61 1.85
4796 6109 6.827727 AGAAGAGGCTTAGAACAACACTAAA 58.172 36.000 0.00 0.00 30.95 1.85
4814 6127 7.012327 TCACAACAAAATTGTACAGGAGAAGAG 59.988 37.037 0.00 0.00 41.31 2.85
4861 6174 4.202441 ACAAGTCATAGGATGTTCATGCC 58.798 43.478 0.92 0.00 0.00 4.40
4862 6175 5.121811 AGACAAGTCATAGGATGTTCATGC 58.878 41.667 2.72 0.00 0.00 4.06
4863 6176 7.335171 TGAAAGACAAGTCATAGGATGTTCATG 59.665 37.037 2.72 0.00 0.00 3.07
5090 6432 4.836125 TGCTGATTGTTCCTCTTCAAAC 57.164 40.909 0.00 0.00 0.00 2.93
5160 6502 7.014615 ACCAAGCATCCTGATATTACATTTTCC 59.985 37.037 0.00 0.00 0.00 3.13
5193 6535 4.670896 ACAAAACAAGTGCAGCCTTTAT 57.329 36.364 0.00 0.00 0.00 1.40
5200 6542 5.138788 CACAAACAAACAAAACAAGTGCAG 58.861 37.500 0.00 0.00 0.00 4.41
5354 6696 3.726235 CGATTACACACTATGAGCAGTCG 59.274 47.826 0.00 0.00 0.00 4.18
5421 6763 2.002586 CGGTCCTCAAGCACAGTTATG 58.997 52.381 0.00 0.00 0.00 1.90
5434 6776 2.033151 CGTTTTCTTTCACACGGTCCTC 60.033 50.000 0.00 0.00 0.00 3.71
5729 7074 2.257409 AATGGCGAGCAAGGTCGGAT 62.257 55.000 21.13 0.00 40.44 4.18
5732 7077 1.448540 AGAATGGCGAGCAAGGTCG 60.449 57.895 16.43 16.43 43.08 4.79
6172 7519 1.519455 CGAGTCCCATCGTCCTTGC 60.519 63.158 0.00 0.00 37.91 4.01
6246 7638 3.013921 ACGAAAAGCTCCAAAACAGTGA 58.986 40.909 0.00 0.00 0.00 3.41
6309 7702 1.102978 GCAACAGTTGGAGTGGTTGT 58.897 50.000 15.28 0.00 41.89 3.32
6320 7713 0.610232 GCCTCCATCCAGCAACAGTT 60.610 55.000 0.00 0.00 0.00 3.16
6414 7807 1.003839 TGGCTTCGATGCGAACCTT 60.004 52.632 16.13 0.00 41.05 3.50
6415 7808 1.741770 GTGGCTTCGATGCGAACCT 60.742 57.895 16.13 0.00 41.05 3.50
6418 7811 3.487202 GCGTGGCTTCGATGCGAA 61.487 61.111 16.13 5.34 43.75 4.70
6450 7843 1.746991 GGCTCCCAACTGCTACAGC 60.747 63.158 0.00 0.00 42.50 4.40
6456 7849 3.050275 GACACGGCTCCCAACTGC 61.050 66.667 0.00 0.00 0.00 4.40
6457 7850 2.149803 TACGACACGGCTCCCAACTG 62.150 60.000 0.00 0.00 0.00 3.16
6484 7877 1.602605 GGGCTTTGCGTACCTTGGT 60.603 57.895 0.00 0.00 0.00 3.67
6493 7886 4.404654 GGCTTCACGGGCTTTGCG 62.405 66.667 0.00 0.00 0.00 4.85
6494 7887 4.404654 CGGCTTCACGGGCTTTGC 62.405 66.667 0.00 0.00 0.00 3.68
6495 7888 1.669760 TACGGCTTCACGGGCTTTG 60.670 57.895 0.00 0.00 38.39 2.77
6496 7889 1.670083 GTACGGCTTCACGGGCTTT 60.670 57.895 0.00 0.00 38.39 3.51
6497 7890 2.047560 GTACGGCTTCACGGGCTT 60.048 61.111 0.00 0.00 38.39 4.35
6498 7891 3.307906 TGTACGGCTTCACGGGCT 61.308 61.111 0.00 0.00 38.39 5.19
6499 7892 3.116531 GTGTACGGCTTCACGGGC 61.117 66.667 0.00 0.00 38.39 6.13
6564 7978 3.969250 TTTCCCATGCCGCCGAGTC 62.969 63.158 0.00 0.00 0.00 3.36
6657 8071 1.557443 CGTTTCCGTCAGTGACAGGC 61.557 60.000 22.66 10.78 32.09 4.85
6658 8072 0.944311 CCGTTTCCGTCAGTGACAGG 60.944 60.000 22.66 21.79 32.09 4.00
6659 8073 0.031585 TCCGTTTCCGTCAGTGACAG 59.968 55.000 22.66 12.10 32.09 3.51
6660 8074 0.460722 TTCCGTTTCCGTCAGTGACA 59.539 50.000 22.66 1.39 32.09 3.58
6661 8075 1.137513 CTTCCGTTTCCGTCAGTGAC 58.862 55.000 13.56 13.56 0.00 3.67
6662 8076 0.032952 CCTTCCGTTTCCGTCAGTGA 59.967 55.000 0.00 0.00 0.00 3.41
6663 8077 0.949105 CCCTTCCGTTTCCGTCAGTG 60.949 60.000 0.00 0.00 0.00 3.66
6664 8078 1.370064 CCCTTCCGTTTCCGTCAGT 59.630 57.895 0.00 0.00 0.00 3.41
6688 8102 0.097674 ATTCAAGCATCAACTCGCGC 59.902 50.000 0.00 0.00 0.00 6.86
6698 8112 5.176406 CGATCACTCGTTCATATTCAAGCAT 59.824 40.000 0.00 0.00 40.07 3.79
6744 8158 4.655649 TGCCATGGTGATAATCTACTCTGT 59.344 41.667 14.67 0.00 0.00 3.41
6762 8176 2.788640 GCCGGTTCATGCATGCCAT 61.789 57.895 22.25 6.01 33.39 4.40
6765 8179 4.557605 CCGCCGGTTCATGCATGC 62.558 66.667 22.25 11.82 0.00 4.06
6872 8290 2.158943 GGAAACGATCGGGAGGAGATTT 60.159 50.000 20.98 7.90 0.00 2.17
6876 8297 0.103208 CAGGAAACGATCGGGAGGAG 59.897 60.000 20.98 1.16 0.00 3.69
7000 8424 4.774503 AAGAGGAGCTGCGCCTGC 62.775 66.667 29.76 19.23 43.20 4.85
7040 8464 4.410400 CGCCGCCCTTCCTTTCCT 62.410 66.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.