Multiple sequence alignment - TraesCS1D01G370000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1D01G370000
chr1D
100.000
3892
0
0
3239
7130
448653706
448657597
0.000000e+00
7188.0
1
TraesCS1D01G370000
chr1D
100.000
2940
0
0
1
2940
448650468
448653407
0.000000e+00
5430.0
2
TraesCS1D01G370000
chr1D
100.000
53
0
0
6009
6061
448656423
448656475
1.640000e-16
99.0
3
TraesCS1D01G370000
chr1D
100.000
53
0
0
5956
6008
448656476
448656528
1.640000e-16
99.0
4
TraesCS1D01G370000
chr1B
95.061
2956
114
13
3300
6239
614453429
614456368
0.000000e+00
4621.0
5
TraesCS1D01G370000
chr1B
92.980
1225
57
9
1736
2933
614452017
614453239
0.000000e+00
1759.0
6
TraesCS1D01G370000
chr1B
94.190
568
20
7
1170
1736
614451314
614451869
0.000000e+00
854.0
7
TraesCS1D01G370000
chr1B
90.449
356
17
9
702
1042
614450653
614451006
3.030000e-123
453.0
8
TraesCS1D01G370000
chr1B
85.421
439
28
11
6695
7129
614456588
614456994
2.380000e-114
424.0
9
TraesCS1D01G370000
chr1B
94.792
192
9
1
6222
6413
614456393
614456583
1.500000e-76
298.0
10
TraesCS1D01G370000
chr1B
96.296
54
1
1
6009
6061
614456082
614456135
3.540000e-13
87.9
11
TraesCS1D01G370000
chr1B
96.226
53
2
0
5956
6008
614456136
614456188
3.540000e-13
87.9
12
TraesCS1D01G370000
chr1A
93.544
2308
103
24
4854
7130
544375675
544377967
0.000000e+00
3395.0
13
TraesCS1D01G370000
chr1A
94.241
1476
67
12
3242
4712
544373375
544374837
0.000000e+00
2239.0
14
TraesCS1D01G370000
chr1A
91.869
1193
61
9
1736
2897
544372121
544373308
0.000000e+00
1633.0
15
TraesCS1D01G370000
chr1A
93.898
590
33
3
1149
1736
544371385
544371973
0.000000e+00
887.0
16
TraesCS1D01G370000
chr1A
96.961
362
7
1
704
1065
544370622
544370979
7.910000e-169
604.0
17
TraesCS1D01G370000
chr1A
93.431
274
18
0
4462
4735
19275856
19275583
2.390000e-109
407.0
18
TraesCS1D01G370000
chr1A
100.000
53
0
0
5956
6008
544376834
544376886
1.640000e-16
99.0
19
TraesCS1D01G370000
chr1A
91.176
68
5
1
4794
4861
544375588
544375654
2.740000e-14
91.6
20
TraesCS1D01G370000
chr1A
96.296
54
1
1
6009
6061
544376780
544376833
3.540000e-13
87.9
21
TraesCS1D01G370000
chr7D
96.434
645
18
4
1
643
161921581
161920940
0.000000e+00
1059.0
22
TraesCS1D01G370000
chr7D
95.069
649
23
8
1
643
182825092
182825737
0.000000e+00
1013.0
23
TraesCS1D01G370000
chr7D
95.216
648
18
10
1
643
235517146
235517785
0.000000e+00
1013.0
24
TraesCS1D01G370000
chr7D
94.753
648
21
7
1
643
497977282
497976643
0.000000e+00
996.0
25
TraesCS1D01G370000
chr6D
96.440
646
16
5
1
643
99229986
99229345
0.000000e+00
1059.0
26
TraesCS1D01G370000
chr6D
94.900
647
26
6
1
643
37425862
37425219
0.000000e+00
1005.0
27
TraesCS1D01G370000
chr5D
95.370
648
24
6
1
643
367985546
367986192
0.000000e+00
1026.0
28
TraesCS1D01G370000
chr5D
94.892
646
25
7
1
643
332198404
332199044
0.000000e+00
1003.0
29
TraesCS1D01G370000
chr4D
94.582
646
28
6
1
643
469548
470189
0.000000e+00
992.0
30
TraesCS1D01G370000
chr3D
93.293
656
40
2
3674
4325
112210829
112210174
0.000000e+00
965.0
31
TraesCS1D01G370000
chr3D
92.308
299
23
0
3671
3969
96784082
96784380
6.610000e-115
425.0
32
TraesCS1D01G370000
chr3D
92.925
212
13
2
4328
4539
112210086
112209877
2.500000e-79
307.0
33
TraesCS1D01G370000
chr7B
95.620
274
12
0
4462
4735
126041004
126040731
2.360000e-119
440.0
34
TraesCS1D01G370000
chr3B
94.526
274
15
0
4462
4735
413315003
413315276
2.380000e-114
424.0
35
TraesCS1D01G370000
chr3B
95.038
262
13
0
4462
4723
725606858
725607119
5.150000e-111
412.0
36
TraesCS1D01G370000
chr3B
94.521
73
3
1
7055
7127
456863007
456863078
2.100000e-20
111.0
37
TraesCS1D01G370000
chr5A
94.030
268
16
0
4462
4729
603032351
603032618
2.390000e-109
407.0
38
TraesCS1D01G370000
chr5A
94.030
268
16
0
4462
4729
677628683
677628416
2.390000e-109
407.0
39
TraesCS1D01G370000
chr4B
93.066
274
19
0
4462
4735
232729863
232730136
1.110000e-107
401.0
40
TraesCS1D01G370000
chr2B
95.946
148
6
0
3822
3969
75660219
75660366
2.570000e-59
241.0
41
TraesCS1D01G370000
chr2B
94.595
148
8
0
3822
3969
56588208
56588061
5.560000e-56
230.0
42
TraesCS1D01G370000
chrUn
95.238
147
7
0
3822
3968
199439045
199439191
4.300000e-57
233.0
43
TraesCS1D01G370000
chrUn
95.238
147
7
0
3822
3968
237714460
237714606
4.300000e-57
233.0
44
TraesCS1D01G370000
chrUn
95.238
147
7
0
3822
3968
368390987
368391133
4.300000e-57
233.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1D01G370000
chr1D
448650468
448657597
7129
False
3204.0000
7188
100.000000
1
7130
4
chr1D.!!$F1
7129
1
TraesCS1D01G370000
chr1B
614450653
614456994
6341
False
1073.1000
4621
93.176875
702
7129
8
chr1B.!!$F1
6427
2
TraesCS1D01G370000
chr1A
544370622
544377967
7345
False
1129.5625
3395
94.748125
704
7130
8
chr1A.!!$F1
6426
3
TraesCS1D01G370000
chr7D
161920940
161921581
641
True
1059.0000
1059
96.434000
1
643
1
chr7D.!!$R1
642
4
TraesCS1D01G370000
chr7D
182825092
182825737
645
False
1013.0000
1013
95.069000
1
643
1
chr7D.!!$F1
642
5
TraesCS1D01G370000
chr7D
235517146
235517785
639
False
1013.0000
1013
95.216000
1
643
1
chr7D.!!$F2
642
6
TraesCS1D01G370000
chr7D
497976643
497977282
639
True
996.0000
996
94.753000
1
643
1
chr7D.!!$R2
642
7
TraesCS1D01G370000
chr6D
99229345
99229986
641
True
1059.0000
1059
96.440000
1
643
1
chr6D.!!$R2
642
8
TraesCS1D01G370000
chr6D
37425219
37425862
643
True
1005.0000
1005
94.900000
1
643
1
chr6D.!!$R1
642
9
TraesCS1D01G370000
chr5D
367985546
367986192
646
False
1026.0000
1026
95.370000
1
643
1
chr5D.!!$F2
642
10
TraesCS1D01G370000
chr5D
332198404
332199044
640
False
1003.0000
1003
94.892000
1
643
1
chr5D.!!$F1
642
11
TraesCS1D01G370000
chr4D
469548
470189
641
False
992.0000
992
94.582000
1
643
1
chr4D.!!$F1
642
12
TraesCS1D01G370000
chr3D
112209877
112210829
952
True
636.0000
965
93.109000
3674
4539
2
chr3D.!!$R1
865
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
634
651
0.325296
ACTGGAGTCCAATCGGCCTA
60.325
55.0
14.17
0.0
30.80
3.93
F
1441
1800
0.565674
AGGGTTTTGGGGATGTTGGT
59.434
50.0
0.00
0.0
0.00
3.67
F
2811
3352
0.464373
AAGCTATGCACCACCATCCG
60.464
55.0
0.00
0.0
0.00
4.18
F
3432
3974
0.545071
TGATGCTGGACAGGTGGAGA
60.545
55.0
1.01
0.0
0.00
3.71
F
3551
4093
1.055849
TGTAGCTGGTCTTGGAAGCA
58.944
50.0
0.00
0.0
39.47
3.91
F
5421
6763
0.393132
GTCTTAGCTTGACCCCAGCC
60.393
60.0
0.00
0.0
0.00
4.85
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1543
1902
0.989890
GTGTCGCTTGCTTACCTACG
59.010
55.000
0.00
0.0
0.00
3.51
R
3253
3795
1.108776
GCATCCAGCAACCATCATGT
58.891
50.000
0.00
0.0
44.79
3.21
R
3868
4410
0.741915
TGGGCTCGTCCAAACAAAAC
59.258
50.000
0.00
0.0
36.21
2.43
R
5421
6763
2.002586
CGGTCCTCAAGCACAGTTATG
58.997
52.381
0.00
0.0
0.00
1.90
R
5434
6776
2.033151
CGTTTTCTTTCACACGGTCCTC
60.033
50.000
0.00
0.0
0.00
3.71
R
6659
8073
0.031585
TCCGTTTCCGTCAGTGACAG
59.968
55.000
22.66
12.1
32.09
3.51
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
46
47
2.364324
TCATACTTAGGTCCGTGATGCC
59.636
50.000
0.00
0.00
0.00
4.40
53
54
1.761174
GTCCGTGATGCCCCCATAT
59.239
57.895
0.00
0.00
0.00
1.78
543
555
4.142609
TGCAAAAACAATTAGCCCACAA
57.857
36.364
0.00
0.00
0.00
3.33
605
622
3.976490
TAGGGGCCAGTCGTCCAGG
62.976
68.421
4.39
0.00
0.00
4.45
634
651
0.325296
ACTGGAGTCCAATCGGCCTA
60.325
55.000
14.17
0.00
30.80
3.93
865
894
4.194720
AGCCGTCATCGACCGAGC
62.195
66.667
0.00
0.00
39.71
5.03
867
896
4.570663
CCGTCATCGACCGAGCCC
62.571
72.222
0.00
0.00
39.71
5.19
868
897
3.822192
CGTCATCGACCGAGCCCA
61.822
66.667
0.00
0.00
39.71
5.36
1065
1099
4.803426
CTCTCCCACGCGCTCACC
62.803
72.222
5.73
0.00
0.00
4.02
1090
1124
3.866582
CCGAGGAGGTCATGGGCC
61.867
72.222
0.00
0.00
34.51
5.80
1091
1125
2.765807
CGAGGAGGTCATGGGCCT
60.766
66.667
4.53
9.08
39.42
5.19
1095
1129
3.235369
GAGGTCATGGGCCTCCTC
58.765
66.667
19.96
16.78
45.05
3.71
1096
1130
2.367512
AGGTCATGGGCCTCCTCC
60.368
66.667
4.53
2.56
0.00
4.30
1097
1131
2.367512
GGTCATGGGCCTCCTCCT
60.368
66.667
4.53
0.00
0.00
3.69
1098
1132
2.447714
GGTCATGGGCCTCCTCCTC
61.448
68.421
4.53
0.00
0.00
3.71
1099
1133
2.444706
TCATGGGCCTCCTCCTCG
60.445
66.667
4.53
0.00
0.00
4.63
1100
1134
3.554342
CATGGGCCTCCTCCTCGG
61.554
72.222
4.53
0.00
0.00
4.63
1137
1171
4.825679
CCTCCCCTCCCCTCCCAC
62.826
77.778
0.00
0.00
0.00
4.61
1138
1172
4.825679
CTCCCCTCCCCTCCCACC
62.826
77.778
0.00
0.00
0.00
4.61
1140
1174
3.373846
CCCCTCCCCTCCCACCTA
61.374
72.222
0.00
0.00
0.00
3.08
1141
1175
2.040779
CCCTCCCCTCCCACCTAC
60.041
72.222
0.00
0.00
0.00
3.18
1142
1176
2.040779
CCTCCCCTCCCACCTACC
60.041
72.222
0.00
0.00
0.00
3.18
1143
1177
2.040779
CTCCCCTCCCACCTACCC
60.041
72.222
0.00
0.00
0.00
3.69
1144
1178
4.084147
TCCCCTCCCACCTACCCG
62.084
72.222
0.00
0.00
0.00
5.28
1145
1179
4.410033
CCCCTCCCACCTACCCGT
62.410
72.222
0.00
0.00
0.00
5.28
1146
1180
2.285144
CCCTCCCACCTACCCGTT
60.285
66.667
0.00
0.00
0.00
4.44
1147
1181
2.364780
CCCTCCCACCTACCCGTTC
61.365
68.421
0.00
0.00
0.00
3.95
1380
1739
0.824759
CTCCCCCAGTTAGTTCCTCG
59.175
60.000
0.00
0.00
0.00
4.63
1389
1748
3.621715
CAGTTAGTTCCTCGGTATTTGGC
59.378
47.826
0.00
0.00
0.00
4.52
1403
1762
3.771568
TTGGCGTGTTTGCTGCTGC
62.772
57.895
8.89
8.89
40.20
5.25
1412
1771
2.752322
TTTGCTGCTGCGTGGATTGC
62.752
55.000
11.21
0.00
43.34
3.56
1441
1800
0.565674
AGGGTTTTGGGGATGTTGGT
59.434
50.000
0.00
0.00
0.00
3.67
1443
1802
1.482365
GGGTTTTGGGGATGTTGGTCT
60.482
52.381
0.00
0.00
0.00
3.85
1543
1902
1.302832
CACTGTCCTGCCTTCCCAC
60.303
63.158
0.00
0.00
0.00
4.61
1558
1917
1.082117
CCCACGTAGGTAAGCAAGCG
61.082
60.000
0.00
0.00
34.66
4.68
1602
1961
0.692476
TCTATTGTGTGCCCACTGCT
59.308
50.000
0.00
0.00
42.34
4.24
1690
2049
0.944386
ACAAACCTGTGACGTGATGC
59.056
50.000
0.00
0.00
33.30
3.91
1691
2050
1.229428
CAAACCTGTGACGTGATGCT
58.771
50.000
0.00
0.00
0.00
3.79
1813
2323
3.521727
ACTGTCCTGAATACAAGGGTCT
58.478
45.455
0.00
0.00
0.00
3.85
1891
2401
5.143376
AGTGCATCTGCTTTTATGCTTTT
57.857
34.783
8.57
0.00
46.87
2.27
2071
2604
4.695606
AGGTTACTTCCTATCTGGGACAA
58.304
43.478
0.00
0.00
34.74
3.18
2089
2622
5.477510
GGACAATTATGCATGGTTTTGTCA
58.522
37.500
27.84
3.06
42.81
3.58
2090
2623
6.108015
GGACAATTATGCATGGTTTTGTCAT
58.892
36.000
27.84
9.36
42.81
3.06
2216
2749
7.558444
TGTTATTACCAATCCAGTCATTAACCC
59.442
37.037
0.00
0.00
0.00
4.11
2230
2763
3.449746
TTAACCCTGAACCATCTTGGG
57.550
47.619
0.00
0.00
43.37
4.12
2415
2948
6.876257
GGGGTGTTGATTATCACTCTATCATC
59.124
42.308
0.00
0.00
35.61
2.92
2439
2972
3.491766
TTCTTCCCTACTGGATGGAGT
57.508
47.619
0.00
0.00
44.66
3.85
2525
3058
6.150976
TGTTGCTATCGTTTTTGGATCAAGAT
59.849
34.615
0.00
0.00
0.00
2.40
2530
3063
9.042008
GCTATCGTTTTTGGATCAAGATAACTA
57.958
33.333
0.00
0.00
0.00
2.24
2572
3110
8.918202
TTGAGCCTTTACTCTTTTGATTAGAA
57.082
30.769
0.00
0.00
37.58
2.10
2695
3233
7.396339
TCTTAGACTGGAAAGCTTGACTACATA
59.604
37.037
0.00
0.00
0.00
2.29
2811
3352
0.464373
AAGCTATGCACCACCATCCG
60.464
55.000
0.00
0.00
0.00
4.18
2819
3360
2.438434
CCACCATCCGACCCAAGC
60.438
66.667
0.00
0.00
0.00
4.01
2898
3440
5.464965
TCGCAATCGTCTATTTTTCCTTC
57.535
39.130
0.00
0.00
36.96
3.46
2938
3480
7.910304
CACAATCTAAGTGTGCTAAATCTACC
58.090
38.462
0.00
0.00
39.93
3.18
2939
3481
6.757010
ACAATCTAAGTGTGCTAAATCTACCG
59.243
38.462
0.00
0.00
0.00
4.02
3257
3799
2.443887
CCCTTGGCAAGTTCAACATG
57.556
50.000
24.57
7.58
0.00
3.21
3258
3800
1.962807
CCCTTGGCAAGTTCAACATGA
59.037
47.619
24.57
0.00
0.00
3.07
3259
3801
2.564062
CCCTTGGCAAGTTCAACATGAT
59.436
45.455
24.57
0.00
0.00
2.45
3260
3802
3.581755
CCTTGGCAAGTTCAACATGATG
58.418
45.455
24.57
0.00
0.00
3.07
3261
3803
3.581755
CTTGGCAAGTTCAACATGATGG
58.418
45.455
19.07
0.00
0.00
3.51
3262
3804
2.596346
TGGCAAGTTCAACATGATGGT
58.404
42.857
0.00
0.00
0.00
3.55
3297
3839
8.608317
GCTGAATCTCTAAAATTCTAGTGGTTC
58.392
37.037
6.84
6.84
34.93
3.62
3301
3843
7.463961
TCTCTAAAATTCTAGTGGTTCGAGT
57.536
36.000
0.00
0.00
0.00
4.18
3306
3848
7.886405
AAAATTCTAGTGGTTCGAGTACTTC
57.114
36.000
0.00
0.00
0.00
3.01
3370
3912
2.930040
TGGCGAGAAAAGATAGAAAGCG
59.070
45.455
0.00
0.00
0.00
4.68
3432
3974
0.545071
TGATGCTGGACAGGTGGAGA
60.545
55.000
1.01
0.00
0.00
3.71
3551
4093
1.055849
TGTAGCTGGTCTTGGAAGCA
58.944
50.000
0.00
0.00
39.47
3.91
3598
4140
4.775236
AGACATTATGTTCAGGGAGCTTC
58.225
43.478
0.00
0.00
0.00
3.86
3784
4326
9.149225
GCAACCAAATGATAGAGTAGATATCTG
57.851
37.037
15.79
0.00
32.02
2.90
3828
4370
5.968387
GGTAACAAACTGACGGATAGATG
57.032
43.478
0.00
0.00
0.00
2.90
3868
4410
5.233476
TGAAGCACACTTAACTGTTTCTACG
59.767
40.000
0.00
0.00
35.82
3.51
3952
4494
8.527567
TGTTAATTGCTTATGTAAAAGTTGCC
57.472
30.769
0.00
0.00
0.00
4.52
4052
4594
2.028112
TCAGTGCACTATTCTGTGGGTC
60.028
50.000
21.20
0.00
38.31
4.46
4116
4658
2.266279
TGTTTCTAGGTCTGGGGAAGG
58.734
52.381
0.00
0.00
0.00
3.46
4539
5170
2.496070
TGGTGCTACAGTCACATACTCC
59.504
50.000
0.00
0.00
35.76
3.85
4664
5298
8.810652
TTTGGCAATGTTCTTTTATGAGTAAC
57.189
30.769
0.00
0.00
0.00
2.50
4668
5302
6.580791
GCAATGTTCTTTTATGAGTAACGCAA
59.419
34.615
0.00
0.00
0.00
4.85
4685
5319
9.044150
AGTAACGCAATATTAACGCCTAAAATA
57.956
29.630
9.32
0.00
0.00
1.40
4726
5387
8.272545
TGTTGTCTTTAGGATGATGAGATTTG
57.727
34.615
0.00
0.00
0.00
2.32
4727
5388
7.884877
TGTTGTCTTTAGGATGATGAGATTTGT
59.115
33.333
0.00
0.00
0.00
2.83
4728
5389
8.394121
GTTGTCTTTAGGATGATGAGATTTGTC
58.606
37.037
0.00
0.00
0.00
3.18
4729
5390
7.855375
TGTCTTTAGGATGATGAGATTTGTCT
58.145
34.615
0.00
0.00
0.00
3.41
4730
5391
7.767659
TGTCTTTAGGATGATGAGATTTGTCTG
59.232
37.037
0.00
0.00
0.00
3.51
4731
5392
7.226325
GTCTTTAGGATGATGAGATTTGTCTGG
59.774
40.741
0.00
0.00
0.00
3.86
4732
5393
6.813293
TTAGGATGATGAGATTTGTCTGGA
57.187
37.500
0.00
0.00
0.00
3.86
4733
5394
5.705397
AGGATGATGAGATTTGTCTGGAA
57.295
39.130
0.00
0.00
0.00
3.53
4734
5395
6.263412
AGGATGATGAGATTTGTCTGGAAT
57.737
37.500
0.00
0.00
0.00
3.01
4735
5396
6.670617
AGGATGATGAGATTTGTCTGGAATT
58.329
36.000
0.00
0.00
0.00
2.17
4736
5397
6.771749
AGGATGATGAGATTTGTCTGGAATTC
59.228
38.462
0.00
0.00
0.00
2.17
4786
5447
7.282585
TGGACTTGGATCGAATTCTCATATTT
58.717
34.615
3.52
0.00
0.00
1.40
4814
6127
5.306394
AGTCCTTTAGTGTTGTTCTAAGCC
58.694
41.667
0.00
0.00
0.00
4.35
4824
6137
4.249661
GTTGTTCTAAGCCTCTTCTCCTG
58.750
47.826
0.00
0.00
0.00
3.86
4830
6143
5.273208
TCTAAGCCTCTTCTCCTGTACAAT
58.727
41.667
0.00
0.00
0.00
2.71
4862
6175
8.676401
TGTGATTTACAGTTACAATCATCATGG
58.324
33.333
0.00
0.00
38.77
3.66
4863
6176
7.645340
GTGATTTACAGTTACAATCATCATGGC
59.355
37.037
0.00
0.00
38.77
4.40
4947
6287
1.535028
TGCTGTGCTTTAACATGACGG
59.465
47.619
0.00
0.00
0.00
4.79
5090
6432
2.345876
TGTGATATGCAACGTGTCCTG
58.654
47.619
0.00
0.00
0.00
3.86
5193
6535
2.109511
TCAGGATGCTTGGTCTCACCA
61.110
52.381
0.00
0.00
41.28
4.17
5354
6696
6.540189
TCTTCTTCTGCTTATCCAAATACAGC
59.460
38.462
0.00
0.00
0.00
4.40
5390
6732
5.236478
GTGTGTAATCGGCTGCTAACATATT
59.764
40.000
0.00
0.00
0.00
1.28
5421
6763
0.393132
GTCTTAGCTTGACCCCAGCC
60.393
60.000
0.00
0.00
0.00
4.85
5434
6776
0.813184
CCCAGCCATAACTGTGCTTG
59.187
55.000
0.00
0.00
35.83
4.01
5753
7098
0.957395
ACCTTGCTCGCCATTCTGTG
60.957
55.000
0.00
0.00
0.00
3.66
5774
7119
5.047731
TGTGATGATGGATAGTCCGATTCTC
60.048
44.000
0.00
0.00
40.17
2.87
5816
7161
0.187606
AACCCCAAACCTGTCCCTTC
59.812
55.000
0.00
0.00
0.00
3.46
6172
7519
5.005779
GTGATCTCTAATGTTAACAGCCGTG
59.994
44.000
14.65
4.65
0.00
4.94
6194
7541
2.783288
GGACGATGGGACTCGGACC
61.783
68.421
0.00
0.00
42.88
4.46
6246
7638
2.706190
ACTTGTCCCACTCTAACTGCTT
59.294
45.455
0.00
0.00
0.00
3.91
6309
7702
1.005805
AGCAACATGACAAGGGCCATA
59.994
47.619
6.18
0.00
0.00
2.74
6320
7713
0.844661
AGGGCCATACAACCACTCCA
60.845
55.000
6.18
0.00
0.00
3.86
6388
7781
1.176619
ACGATCGACCTGGACACACA
61.177
55.000
24.34
0.00
0.00
3.72
6418
7811
4.699522
GCCGGAGCCGACAAAGGT
62.700
66.667
5.05
0.00
42.83
3.50
6421
7814
2.380410
CGGAGCCGACAAAGGTTCG
61.380
63.158
2.00
0.00
41.67
3.95
6456
7849
1.999289
GATCGTCGCGTCGCTGTAG
60.999
63.158
20.62
4.18
0.00
2.74
6457
7850
4.806481
TCGTCGCGTCGCTGTAGC
62.806
66.667
20.62
0.00
37.78
3.58
6462
7855
2.772189
GCGTCGCTGTAGCAGTTG
59.228
61.111
10.68
0.00
42.21
3.16
6493
7886
0.108472
GTACGGGCTCACCAAGGTAC
60.108
60.000
0.00
0.00
40.22
3.34
6494
7887
1.597797
TACGGGCTCACCAAGGTACG
61.598
60.000
0.00
0.00
40.22
3.67
6495
7888
2.436115
GGGCTCACCAAGGTACGC
60.436
66.667
0.00
0.00
39.85
4.42
6496
7889
2.345991
GGCTCACCAAGGTACGCA
59.654
61.111
12.17
0.00
35.26
5.24
6497
7890
1.302192
GGCTCACCAAGGTACGCAA
60.302
57.895
12.17
0.00
35.26
4.85
6498
7891
0.887387
GGCTCACCAAGGTACGCAAA
60.887
55.000
12.17
0.00
35.26
3.68
6499
7892
0.517316
GCTCACCAAGGTACGCAAAG
59.483
55.000
6.96
0.00
0.00
2.77
6500
7893
0.517316
CTCACCAAGGTACGCAAAGC
59.483
55.000
0.00
0.00
0.00
3.51
6501
7894
0.887387
TCACCAAGGTACGCAAAGCC
60.887
55.000
0.00
0.00
0.00
4.35
6527
7920
4.446413
CGTACACGCCACCCTCCC
62.446
72.222
0.00
0.00
0.00
4.30
6528
7921
4.446413
GTACACGCCACCCTCCCG
62.446
72.222
0.00
0.00
0.00
5.14
6569
7983
3.569049
AACGTTCCGGCTGGACTCG
62.569
63.158
26.73
26.73
46.45
4.18
6570
7984
4.796231
CGTTCCGGCTGGACTCGG
62.796
72.222
15.79
1.24
46.45
4.63
6636
8050
3.490078
GCGTCCTTGTTTGAATTGAACCA
60.490
43.478
0.00
0.00
0.00
3.67
6637
8051
4.795962
GCGTCCTTGTTTGAATTGAACCAT
60.796
41.667
0.00
0.00
0.00
3.55
6663
8077
3.418068
GCGTGCTGTCAGCCTGTC
61.418
66.667
21.99
8.94
41.51
3.51
6664
8078
2.029518
CGTGCTGTCAGCCTGTCA
59.970
61.111
21.99
0.00
41.51
3.58
6688
8102
2.361230
GAAACGGAAGGGCCTGGG
60.361
66.667
6.92
1.29
0.00
4.45
6744
8158
2.338620
CTGACAGCGACGGGTGAA
59.661
61.111
0.00
0.00
44.37
3.18
6765
8179
6.703607
GTGAACAGAGTAGATTATCACCATGG
59.296
42.308
11.19
11.19
31.81
3.66
6800
8214
2.874457
GCGGCCATATCCTATCCGTTTT
60.874
50.000
2.24
0.00
41.89
2.43
6809
8223
7.014230
CCATATCCTATCCGTTTTGGTTTTCAT
59.986
37.037
0.00
0.00
39.52
2.57
6872
8290
1.003704
TTTCCCCTCCCGCTCCATA
59.996
57.895
0.00
0.00
0.00
2.74
6876
8297
0.036875
CCCCTCCCGCTCCATAAATC
59.963
60.000
0.00
0.00
0.00
2.17
6986
8410
2.874780
GCGACGCGTAGACACAGG
60.875
66.667
23.92
1.44
0.00
4.00
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
46
47
1.961180
GCTCCGGATCCGATATGGGG
61.961
65.000
35.42
18.80
42.83
4.96
53
54
2.043349
TTCCAGCTCCGGATCCGA
60.043
61.111
35.42
19.41
42.83
4.55
600
617
1.982395
CAGTCGGCCTACACCTGGA
60.982
63.158
10.45
0.00
0.00
3.86
605
622
1.511768
GACTCCAGTCGGCCTACAC
59.488
63.158
10.45
0.00
35.12
2.90
691
708
3.629398
CCGCAGATCTGAGGCTAATTTTT
59.371
43.478
29.31
0.00
43.27
1.94
692
709
3.209410
CCGCAGATCTGAGGCTAATTTT
58.791
45.455
29.31
0.00
43.27
1.82
693
710
2.843701
CCGCAGATCTGAGGCTAATTT
58.156
47.619
29.31
0.00
43.27
1.82
694
711
2.540265
CCGCAGATCTGAGGCTAATT
57.460
50.000
29.31
0.00
43.27
1.40
866
895
4.065281
GTCGGTCGGAGTGGGTGG
62.065
72.222
0.00
0.00
0.00
4.61
867
896
4.065281
GGTCGGTCGGAGTGGGTG
62.065
72.222
0.00
0.00
0.00
4.61
1065
1099
2.361357
ACCTCCTCGGTCTCCGTG
60.361
66.667
8.03
5.75
44.93
4.94
1073
1107
3.866582
GGCCCATGACCTCCTCGG
61.867
72.222
0.00
0.00
39.35
4.63
1074
1108
2.765807
AGGCCCATGACCTCCTCG
60.766
66.667
0.00
0.00
28.76
4.63
1075
1109
3.235369
GAGGCCCATGACCTCCTC
58.765
66.667
19.04
12.81
46.81
3.71
1079
1113
2.367512
GGAGGAGGCCCATGACCT
60.368
66.667
0.00
6.94
41.41
3.85
1080
1114
2.367512
AGGAGGAGGCCCATGACC
60.368
66.667
0.00
0.00
33.88
4.02
1081
1115
2.801631
CGAGGAGGAGGCCCATGAC
61.802
68.421
0.00
0.00
33.88
3.06
1082
1116
2.444706
CGAGGAGGAGGCCCATGA
60.445
66.667
0.00
0.00
33.88
3.07
1083
1117
3.554342
CCGAGGAGGAGGCCCATG
61.554
72.222
0.00
0.00
45.00
3.66
1090
1124
3.878519
GACGTCGCCGAGGAGGAG
61.879
72.222
14.36
0.00
45.00
3.69
1093
1127
4.813526
CACGACGTCGCCGAGGAG
62.814
72.222
35.92
14.17
44.43
3.69
1096
1130
4.695231
AACCACGACGTCGCCGAG
62.695
66.667
35.92
23.47
44.43
4.63
1097
1131
4.688419
GAACCACGACGTCGCCGA
62.688
66.667
35.92
0.00
44.43
5.54
1120
1154
4.825679
GTGGGAGGGGAGGGGAGG
62.826
77.778
0.00
0.00
0.00
4.30
1121
1155
4.825679
GGTGGGAGGGGAGGGGAG
62.826
77.778
0.00
0.00
0.00
4.30
1122
1156
3.961901
TAGGTGGGAGGGGAGGGGA
62.962
68.421
0.00
0.00
0.00
4.81
1123
1157
3.373846
TAGGTGGGAGGGGAGGGG
61.374
72.222
0.00
0.00
0.00
4.79
1124
1158
2.040779
GTAGGTGGGAGGGGAGGG
60.041
72.222
0.00
0.00
0.00
4.30
1125
1159
2.040779
GGTAGGTGGGAGGGGAGG
60.041
72.222
0.00
0.00
0.00
4.30
1126
1160
2.040779
GGGTAGGTGGGAGGGGAG
60.041
72.222
0.00
0.00
0.00
4.30
1127
1161
4.084147
CGGGTAGGTGGGAGGGGA
62.084
72.222
0.00
0.00
0.00
4.81
1128
1162
3.937372
AACGGGTAGGTGGGAGGGG
62.937
68.421
0.00
0.00
0.00
4.79
1129
1163
2.285144
AACGGGTAGGTGGGAGGG
60.285
66.667
0.00
0.00
0.00
4.30
1130
1164
2.364780
GGAACGGGTAGGTGGGAGG
61.365
68.421
0.00
0.00
0.00
4.30
1131
1165
2.364780
GGGAACGGGTAGGTGGGAG
61.365
68.421
0.00
0.00
0.00
4.30
1132
1166
2.284847
GGGAACGGGTAGGTGGGA
60.285
66.667
0.00
0.00
0.00
4.37
1133
1167
3.405318
GGGGAACGGGTAGGTGGG
61.405
72.222
0.00
0.00
0.00
4.61
1134
1168
2.285144
AGGGGAACGGGTAGGTGG
60.285
66.667
0.00
0.00
0.00
4.61
1135
1169
2.364780
GGAGGGGAACGGGTAGGTG
61.365
68.421
0.00
0.00
0.00
4.00
1136
1170
2.040114
GGAGGGGAACGGGTAGGT
59.960
66.667
0.00
0.00
0.00
3.08
1137
1171
2.767073
GGGAGGGGAACGGGTAGG
60.767
72.222
0.00
0.00
0.00
3.18
1138
1172
2.767073
GGGGAGGGGAACGGGTAG
60.767
72.222
0.00
0.00
0.00
3.18
1139
1173
3.286725
AGGGGAGGGGAACGGGTA
61.287
66.667
0.00
0.00
0.00
3.69
1140
1174
4.735599
GAGGGGAGGGGAACGGGT
62.736
72.222
0.00
0.00
0.00
5.28
1166
1522
1.667154
CTCAGACATTCGCGAGGGGA
61.667
60.000
9.59
0.00
0.00
4.81
1380
1739
1.696988
CAGCAAACACGCCAAATACC
58.303
50.000
0.00
0.00
0.00
2.73
1389
1748
2.723271
CACGCAGCAGCAAACACG
60.723
61.111
0.82
0.00
42.27
4.49
1403
1762
1.390123
CTACTGTCAACGCAATCCACG
59.610
52.381
0.00
0.00
0.00
4.94
1412
1771
1.877443
CCCAAAACCCTACTGTCAACG
59.123
52.381
0.00
0.00
0.00
4.10
1441
1800
3.936372
ACGTGCTAGCAGAGTTAAAGA
57.064
42.857
20.03
0.00
0.00
2.52
1443
1802
5.575606
GTCATTACGTGCTAGCAGAGTTAAA
59.424
40.000
24.97
16.85
0.00
1.52
1469
1828
1.608336
TCGTCTTCCCGATGGTGGT
60.608
57.895
0.00
0.00
30.63
4.16
1543
1902
0.989890
GTGTCGCTTGCTTACCTACG
59.010
55.000
0.00
0.00
0.00
3.51
1558
1917
1.062587
CAATGCGAGGGAATTCGTGTC
59.937
52.381
0.00
0.00
42.38
3.67
1602
1961
2.875672
GCATAGTGAAACACAGCCCTGA
60.876
50.000
1.69
0.00
41.43
3.86
1691
2050
9.278978
TCAAACTGCATAGACAAAAACTATGTA
57.721
29.630
13.79
9.89
44.96
2.29
1813
2323
6.354130
GTCAATTGGTTAGGAGCCAGTAATA
58.646
40.000
5.42
0.00
37.31
0.98
2089
2622
5.745294
GCAACATCAAAATACGATTCAGCAT
59.255
36.000
0.00
0.00
0.00
3.79
2090
2623
5.094812
GCAACATCAAAATACGATTCAGCA
58.905
37.500
0.00
0.00
0.00
4.41
2230
2763
5.297547
TGCTAATGAGTTATCGGATGAACC
58.702
41.667
0.00
0.00
0.00
3.62
2325
2858
3.266636
TGCTGTAATACCACAACATCCG
58.733
45.455
0.00
0.00
0.00
4.18
2424
2957
6.494666
TTAAACATACTCCATCCAGTAGGG
57.505
41.667
0.00
0.00
35.40
3.53
2439
2972
5.031066
AGTAGGCGCCAGATTTAAACATA
57.969
39.130
31.54
4.10
0.00
2.29
2558
3096
7.436673
CCGTGACCTCTATTCTAATCAAAAGAG
59.563
40.741
0.00
0.00
0.00
2.85
2572
3110
2.510382
TCTTCTCTCCCGTGACCTCTAT
59.490
50.000
0.00
0.00
0.00
1.98
2695
3233
9.143155
ACTTTTGAGGGTTAACATTTAGTGAAT
57.857
29.630
8.10
0.00
0.00
2.57
2811
3352
2.102252
TGTTCAACCATTTGCTTGGGTC
59.898
45.455
5.99
0.00
41.35
4.46
2819
3360
5.473504
AGCCTACTTACTGTTCAACCATTTG
59.526
40.000
0.00
0.00
0.00
2.32
2904
3446
6.005583
CACACTTAGATTGTGCTGAACATT
57.994
37.500
0.00
0.00
38.99
2.71
3238
3780
1.962807
TCATGTTGAACTTGCCAAGGG
59.037
47.619
9.64
0.00
0.00
3.95
3239
3781
3.581755
CATCATGTTGAACTTGCCAAGG
58.418
45.455
9.64
0.00
0.00
3.61
3240
3782
3.006110
ACCATCATGTTGAACTTGCCAAG
59.994
43.478
2.11
2.11
0.00
3.61
3241
3783
2.964464
ACCATCATGTTGAACTTGCCAA
59.036
40.909
5.30
0.00
0.00
4.52
3242
3784
2.596346
ACCATCATGTTGAACTTGCCA
58.404
42.857
5.30
0.00
0.00
4.92
3243
3785
3.319755
CAACCATCATGTTGAACTTGCC
58.680
45.455
5.30
0.00
46.77
4.52
3244
3786
2.733026
GCAACCATCATGTTGAACTTGC
59.267
45.455
8.01
10.44
46.77
4.01
3245
3787
3.985279
CAGCAACCATCATGTTGAACTTG
59.015
43.478
8.01
4.97
46.77
3.16
3246
3788
3.006110
CCAGCAACCATCATGTTGAACTT
59.994
43.478
8.01
0.00
46.77
2.66
3247
3789
2.559668
CCAGCAACCATCATGTTGAACT
59.440
45.455
8.01
0.00
46.77
3.01
3248
3790
2.557924
TCCAGCAACCATCATGTTGAAC
59.442
45.455
8.01
0.00
46.77
3.18
3249
3791
2.874014
TCCAGCAACCATCATGTTGAA
58.126
42.857
8.01
0.00
46.77
2.69
3250
3792
2.583024
TCCAGCAACCATCATGTTGA
57.417
45.000
8.01
0.00
46.77
3.18
3251
3793
2.737359
GCATCCAGCAACCATCATGTTG
60.737
50.000
0.00
0.00
46.59
3.33
3252
3794
1.479323
GCATCCAGCAACCATCATGTT
59.521
47.619
0.00
0.00
44.79
2.71
3253
3795
1.108776
GCATCCAGCAACCATCATGT
58.891
50.000
0.00
0.00
44.79
3.21
3254
3796
3.959478
GCATCCAGCAACCATCATG
57.041
52.632
0.00
0.00
44.79
3.07
3297
3839
8.858003
TTATTTCAGCTCATAAGAAGTACTCG
57.142
34.615
0.00
0.00
0.00
4.18
3301
3843
8.494433
ACCCATTATTTCAGCTCATAAGAAGTA
58.506
33.333
0.00
0.00
0.00
2.24
3306
3848
7.284034
AGTTGACCCATTATTTCAGCTCATAAG
59.716
37.037
0.00
0.00
0.00
1.73
3370
3912
8.184192
CCCAATGAAATAGTTGTCATAGTTCAC
58.816
37.037
0.00
0.00
39.27
3.18
3432
3974
5.818678
TGACATGTTACTTACTGGTTCCT
57.181
39.130
0.00
0.00
0.00
3.36
3551
4093
7.553334
TCTACTAGGTTGTTTCATATTCGCTT
58.447
34.615
0.00
0.00
0.00
4.68
3640
4182
6.402983
GCAGGTGTCAGTTTTATCATCAGAAG
60.403
42.308
0.00
0.00
0.00
2.85
3649
4191
4.910195
TGATCAGCAGGTGTCAGTTTTAT
58.090
39.130
0.00
0.00
0.00
1.40
3784
4326
9.928236
TTACCACGTTTACAAAAACATTAGTAC
57.072
29.630
0.00
0.00
44.37
2.73
3828
4370
6.361748
GTGTGCTTCATTGTTCTGAATTTCTC
59.638
38.462
0.00
0.00
34.76
2.87
3868
4410
0.741915
TGGGCTCGTCCAAACAAAAC
59.258
50.000
0.00
0.00
36.21
2.43
3952
4494
3.018856
TCAATGGAGCAGCATAAACCAG
58.981
45.455
0.00
0.00
34.08
4.00
4101
4643
1.007238
TGAGACCTTCCCCAGACCTAG
59.993
57.143
0.00
0.00
0.00
3.02
4116
4658
7.147915
GGAGAATACAGATCCATATCCTGAGAC
60.148
44.444
0.00
0.00
33.08
3.36
4539
5170
4.052608
GTTTGTTTTAACATGGAACCCGG
58.947
43.478
0.00
0.00
38.95
5.73
4664
5298
9.269415
GGTAATATTTTAGGCGTTAATATTGCG
57.731
33.333
19.14
4.18
37.54
4.85
4685
5319
3.304829
ACAACAAAGCCTGGTTGGTAAT
58.695
40.909
7.48
0.00
46.56
1.89
4726
5387
8.797438
AGTTCAAAATCCTAAAGAATTCCAGAC
58.203
33.333
0.65
0.00
0.00
3.51
4727
5388
8.940397
AGTTCAAAATCCTAAAGAATTCCAGA
57.060
30.769
0.65
0.00
0.00
3.86
4730
5391
9.574458
GCTTAGTTCAAAATCCTAAAGAATTCC
57.426
33.333
0.65
0.00
0.00
3.01
4731
5392
9.278734
CGCTTAGTTCAAAATCCTAAAGAATTC
57.721
33.333
0.00
0.00
0.00
2.17
4732
5393
8.793592
ACGCTTAGTTCAAAATCCTAAAGAATT
58.206
29.630
0.00
0.00
0.00
2.17
4733
5394
8.336801
ACGCTTAGTTCAAAATCCTAAAGAAT
57.663
30.769
0.00
0.00
0.00
2.40
4734
5395
7.739498
ACGCTTAGTTCAAAATCCTAAAGAA
57.261
32.000
0.00
0.00
0.00
2.52
4735
5396
8.836268
TTACGCTTAGTTCAAAATCCTAAAGA
57.164
30.769
0.00
0.00
0.00
2.52
4736
5397
9.490663
CATTACGCTTAGTTCAAAATCCTAAAG
57.509
33.333
0.00
0.00
0.00
1.85
4747
5408
4.020928
TCCAAGTCCATTACGCTTAGTTCA
60.021
41.667
0.00
0.00
0.00
3.18
4786
5447
9.760077
CTTAGAACAACACTAAAGGACTCTTTA
57.240
33.333
0.00
0.00
42.61
1.85
4796
6109
6.827727
AGAAGAGGCTTAGAACAACACTAAA
58.172
36.000
0.00
0.00
30.95
1.85
4814
6127
7.012327
TCACAACAAAATTGTACAGGAGAAGAG
59.988
37.037
0.00
0.00
41.31
2.85
4861
6174
4.202441
ACAAGTCATAGGATGTTCATGCC
58.798
43.478
0.92
0.00
0.00
4.40
4862
6175
5.121811
AGACAAGTCATAGGATGTTCATGC
58.878
41.667
2.72
0.00
0.00
4.06
4863
6176
7.335171
TGAAAGACAAGTCATAGGATGTTCATG
59.665
37.037
2.72
0.00
0.00
3.07
5090
6432
4.836125
TGCTGATTGTTCCTCTTCAAAC
57.164
40.909
0.00
0.00
0.00
2.93
5160
6502
7.014615
ACCAAGCATCCTGATATTACATTTTCC
59.985
37.037
0.00
0.00
0.00
3.13
5193
6535
4.670896
ACAAAACAAGTGCAGCCTTTAT
57.329
36.364
0.00
0.00
0.00
1.40
5200
6542
5.138788
CACAAACAAACAAAACAAGTGCAG
58.861
37.500
0.00
0.00
0.00
4.41
5354
6696
3.726235
CGATTACACACTATGAGCAGTCG
59.274
47.826
0.00
0.00
0.00
4.18
5421
6763
2.002586
CGGTCCTCAAGCACAGTTATG
58.997
52.381
0.00
0.00
0.00
1.90
5434
6776
2.033151
CGTTTTCTTTCACACGGTCCTC
60.033
50.000
0.00
0.00
0.00
3.71
5729
7074
2.257409
AATGGCGAGCAAGGTCGGAT
62.257
55.000
21.13
0.00
40.44
4.18
5732
7077
1.448540
AGAATGGCGAGCAAGGTCG
60.449
57.895
16.43
16.43
43.08
4.79
6172
7519
1.519455
CGAGTCCCATCGTCCTTGC
60.519
63.158
0.00
0.00
37.91
4.01
6246
7638
3.013921
ACGAAAAGCTCCAAAACAGTGA
58.986
40.909
0.00
0.00
0.00
3.41
6309
7702
1.102978
GCAACAGTTGGAGTGGTTGT
58.897
50.000
15.28
0.00
41.89
3.32
6320
7713
0.610232
GCCTCCATCCAGCAACAGTT
60.610
55.000
0.00
0.00
0.00
3.16
6414
7807
1.003839
TGGCTTCGATGCGAACCTT
60.004
52.632
16.13
0.00
41.05
3.50
6415
7808
1.741770
GTGGCTTCGATGCGAACCT
60.742
57.895
16.13
0.00
41.05
3.50
6418
7811
3.487202
GCGTGGCTTCGATGCGAA
61.487
61.111
16.13
5.34
43.75
4.70
6450
7843
1.746991
GGCTCCCAACTGCTACAGC
60.747
63.158
0.00
0.00
42.50
4.40
6456
7849
3.050275
GACACGGCTCCCAACTGC
61.050
66.667
0.00
0.00
0.00
4.40
6457
7850
2.149803
TACGACACGGCTCCCAACTG
62.150
60.000
0.00
0.00
0.00
3.16
6484
7877
1.602605
GGGCTTTGCGTACCTTGGT
60.603
57.895
0.00
0.00
0.00
3.67
6493
7886
4.404654
GGCTTCACGGGCTTTGCG
62.405
66.667
0.00
0.00
0.00
4.85
6494
7887
4.404654
CGGCTTCACGGGCTTTGC
62.405
66.667
0.00
0.00
0.00
3.68
6495
7888
1.669760
TACGGCTTCACGGGCTTTG
60.670
57.895
0.00
0.00
38.39
2.77
6496
7889
1.670083
GTACGGCTTCACGGGCTTT
60.670
57.895
0.00
0.00
38.39
3.51
6497
7890
2.047560
GTACGGCTTCACGGGCTT
60.048
61.111
0.00
0.00
38.39
4.35
6498
7891
3.307906
TGTACGGCTTCACGGGCT
61.308
61.111
0.00
0.00
38.39
5.19
6499
7892
3.116531
GTGTACGGCTTCACGGGC
61.117
66.667
0.00
0.00
38.39
6.13
6564
7978
3.969250
TTTCCCATGCCGCCGAGTC
62.969
63.158
0.00
0.00
0.00
3.36
6657
8071
1.557443
CGTTTCCGTCAGTGACAGGC
61.557
60.000
22.66
10.78
32.09
4.85
6658
8072
0.944311
CCGTTTCCGTCAGTGACAGG
60.944
60.000
22.66
21.79
32.09
4.00
6659
8073
0.031585
TCCGTTTCCGTCAGTGACAG
59.968
55.000
22.66
12.10
32.09
3.51
6660
8074
0.460722
TTCCGTTTCCGTCAGTGACA
59.539
50.000
22.66
1.39
32.09
3.58
6661
8075
1.137513
CTTCCGTTTCCGTCAGTGAC
58.862
55.000
13.56
13.56
0.00
3.67
6662
8076
0.032952
CCTTCCGTTTCCGTCAGTGA
59.967
55.000
0.00
0.00
0.00
3.41
6663
8077
0.949105
CCCTTCCGTTTCCGTCAGTG
60.949
60.000
0.00
0.00
0.00
3.66
6664
8078
1.370064
CCCTTCCGTTTCCGTCAGT
59.630
57.895
0.00
0.00
0.00
3.41
6688
8102
0.097674
ATTCAAGCATCAACTCGCGC
59.902
50.000
0.00
0.00
0.00
6.86
6698
8112
5.176406
CGATCACTCGTTCATATTCAAGCAT
59.824
40.000
0.00
0.00
40.07
3.79
6744
8158
4.655649
TGCCATGGTGATAATCTACTCTGT
59.344
41.667
14.67
0.00
0.00
3.41
6762
8176
2.788640
GCCGGTTCATGCATGCCAT
61.789
57.895
22.25
6.01
33.39
4.40
6765
8179
4.557605
CCGCCGGTTCATGCATGC
62.558
66.667
22.25
11.82
0.00
4.06
6872
8290
2.158943
GGAAACGATCGGGAGGAGATTT
60.159
50.000
20.98
7.90
0.00
2.17
6876
8297
0.103208
CAGGAAACGATCGGGAGGAG
59.897
60.000
20.98
1.16
0.00
3.69
7000
8424
4.774503
AAGAGGAGCTGCGCCTGC
62.775
66.667
29.76
19.23
43.20
4.85
7040
8464
4.410400
CGCCGCCCTTCCTTTCCT
62.410
66.667
0.00
0.00
0.00
3.36
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.