Multiple sequence alignment - TraesCS1D01G369700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G369700 chr1D 100.000 2201 0 0 801 3001 448601513 448603713 0.000000e+00 4065.0
1 TraesCS1D01G369700 chr1D 100.000 564 0 0 1 564 448600713 448601276 0.000000e+00 1042.0
2 TraesCS1D01G369700 chr1D 80.083 723 91 42 828 1528 448639480 448640171 3.480000e-134 488.0
3 TraesCS1D01G369700 chr1D 87.298 433 38 8 1454 1872 448640163 448640592 2.090000e-131 479.0
4 TraesCS1D01G369700 chr1D 84.946 372 44 7 1422 1787 448377004 448377369 1.700000e-97 366.0
5 TraesCS1D01G369700 chr1D 94.558 147 8 0 1641 1787 448283792 448283938 8.370000e-56 228.0
6 TraesCS1D01G369700 chr1A 90.726 496 41 4 2510 3001 544299675 544300169 0.000000e+00 656.0
7 TraesCS1D01G369700 chr1A 81.902 757 82 32 806 1528 544292689 544293424 3.330000e-164 588.0
8 TraesCS1D01G369700 chr1A 89.800 451 31 8 1631 2076 544298636 544299076 5.620000e-157 564.0
9 TraesCS1D01G369700 chr1A 87.008 508 53 10 2007 2509 544294087 544294586 7.260000e-156 560.0
10 TraesCS1D01G369700 chr1A 86.498 474 37 17 1148 1604 544318606 544319069 2.080000e-136 496.0
11 TraesCS1D01G369700 chr1A 89.634 328 28 6 2514 2837 544294653 544294978 2.150000e-111 412.0
12 TraesCS1D01G369700 chr1A 87.797 295 24 4 1587 1872 544319085 544319376 4.790000e-88 335.0
13 TraesCS1D01G369700 chr1A 85.484 310 20 14 1587 1872 544293549 544293857 1.750000e-77 300.0
14 TraesCS1D01G369700 chr1A 94.388 196 10 1 369 564 544297626 544297820 1.750000e-77 300.0
15 TraesCS1D01G369700 chr1A 85.824 261 32 5 2096 2355 544299064 544299320 3.810000e-69 272.0
16 TraesCS1D01G369700 chr1A 91.765 170 12 2 1641 1809 544177284 544177452 5.000000e-58 235.0
17 TraesCS1D01G369700 chr1A 82.424 165 16 9 828 989 544318317 544318471 6.750000e-27 132.0
18 TraesCS1D01G369700 chr1B 89.024 492 35 13 1587 2076 614425970 614426444 2.580000e-165 592.0
19 TraesCS1D01G369700 chr1B 79.851 804 107 38 828 1599 614442215 614442995 1.220000e-148 536.0
20 TraesCS1D01G369700 chr1B 84.746 472 30 14 1591 2062 614420712 614421141 4.590000e-118 435.0
21 TraesCS1D01G369700 chr1B 80.465 430 70 10 1407 1831 614292538 614292958 1.740000e-82 316.0
22 TraesCS1D01G369700 chr1B 91.045 201 18 0 1328 1528 614425645 614425845 3.810000e-69 272.0
23 TraesCS1D01G369700 chr1B 80.833 240 30 12 4 231 172797543 172797308 1.110000e-39 174.0
24 TraesCS1D01G369700 chr1B 95.000 80 2 2 1526 1604 614425876 614425954 1.130000e-24 124.0
25 TraesCS1D01G369700 chr1B 86.792 106 12 2 1130 1234 614423300 614423404 1.890000e-22 117.0
26 TraesCS1D01G369700 chr1B 87.097 93 10 2 897 989 614423071 614423161 1.470000e-18 104.0
27 TraesCS1D01G369700 chr1B 90.698 43 0 3 1407 1449 614183619 614183657 2.000000e-03 54.7
28 TraesCS1D01G369700 chr7B 81.463 410 57 14 1130 1528 658805199 658805600 4.830000e-83 318.0
29 TraesCS1D01G369700 chr7B 87.097 93 10 2 897 989 658804977 658805067 1.470000e-18 104.0
30 TraesCS1D01G369700 chr7B 97.222 36 1 0 2186 2221 720976059 720976024 8.980000e-06 62.1
31 TraesCS1D01G369700 chr6B 80.263 304 40 9 2204 2489 25048676 25048375 8.430000e-51 211.0
32 TraesCS1D01G369700 chr2D 76.762 383 73 12 1 372 88310718 88310341 1.820000e-47 200.0
33 TraesCS1D01G369700 chr2D 100.000 28 0 0 2188 2215 59729181 59729208 5.000000e-03 52.8
34 TraesCS1D01G369700 chr7D 81.301 246 36 8 2252 2489 40480062 40480305 1.100000e-44 191.0
35 TraesCS1D01G369700 chrUn 76.154 390 59 22 1 372 93832181 93831808 1.110000e-39 174.0
36 TraesCS1D01G369700 chr5D 79.592 245 30 14 1 231 142390576 142390814 1.110000e-34 158.0
37 TraesCS1D01G369700 chr4B 79.253 241 27 12 1 231 359612453 359612680 2.410000e-31 147.0
38 TraesCS1D01G369700 chr6A 82.692 156 23 4 2338 2489 520049170 520049015 5.220000e-28 135.0
39 TraesCS1D01G369700 chr5B 86.179 123 16 1 24 146 677283222 677283343 6.750000e-27 132.0
40 TraesCS1D01G369700 chr4D 85.827 127 14 4 3 127 136052530 136052654 6.750000e-27 132.0
41 TraesCS1D01G369700 chr6D 87.736 106 13 0 26 131 352838826 352838931 1.130000e-24 124.0
42 TraesCS1D01G369700 chr5A 81.757 148 22 4 1 146 152961709 152961565 5.260000e-23 119.0
43 TraesCS1D01G369700 chr3A 100.000 30 0 0 2187 2216 728859268 728859297 4.180000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G369700 chr1D 448600713 448603713 3000 False 2553.5 4065 100.000000 1 3001 2 chr1D.!!$F3 3000
1 TraesCS1D01G369700 chr1D 448639480 448640592 1112 False 483.5 488 83.690500 828 1872 2 chr1D.!!$F4 1044
2 TraesCS1D01G369700 chr1A 544292689 544300169 7480 False 456.5 656 88.095750 369 3001 8 chr1A.!!$F2 2632
3 TraesCS1D01G369700 chr1A 544318317 544319376 1059 False 321.0 496 85.573000 828 1872 3 chr1A.!!$F3 1044
4 TraesCS1D01G369700 chr1B 614442215 614442995 780 False 536.0 536 79.851000 828 1599 1 chr1B.!!$F3 771
5 TraesCS1D01G369700 chr1B 614420712 614426444 5732 False 274.0 592 88.950667 897 2076 6 chr1B.!!$F4 1179
6 TraesCS1D01G369700 chr7B 658804977 658805600 623 False 211.0 318 84.280000 897 1528 2 chr7B.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
887 888 0.032678 ATCGAATCAGCAGTAGCCCG 59.967 55.0 0.0 0.0 43.56 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2114 11010 0.171231 TCTGCTCACTCGGTTCATCG 59.829 55.0 0.0 0.0 0.0 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.418777 CCGAGGCGCATCTCATCA 59.581 61.111 20.86 0.00 33.59 3.07
20 21 1.361632 CGAGGCGCATCTCATCAGA 59.638 57.895 20.86 0.00 33.59 3.27
21 22 0.938637 CGAGGCGCATCTCATCAGAC 60.939 60.000 20.86 0.00 33.59 3.51
22 23 0.388659 GAGGCGCATCTCATCAGACT 59.611 55.000 16.00 0.00 34.13 3.24
25 26 0.103755 GCGCATCTCATCAGACTGGA 59.896 55.000 0.30 0.00 0.00 3.86
26 27 1.270199 GCGCATCTCATCAGACTGGAT 60.270 52.381 0.30 0.00 0.00 3.41
28 29 2.296752 CGCATCTCATCAGACTGGATCT 59.703 50.000 1.81 0.00 38.66 2.75
31 32 2.580962 TCTCATCAGACTGGATCTCGG 58.419 52.381 1.81 0.00 34.41 4.63
32 33 1.000385 CTCATCAGACTGGATCTCGGC 60.000 57.143 1.81 0.00 34.41 5.54
33 34 1.039068 CATCAGACTGGATCTCGGCT 58.961 55.000 1.81 0.00 34.41 5.52
36 37 0.385029 CAGACTGGATCTCGGCTGAG 59.615 60.000 16.98 16.98 43.99 3.35
77 78 3.434319 GACGTCGTGGTAGCCCGA 61.434 66.667 0.63 0.00 0.00 5.14
78 79 2.981560 GACGTCGTGGTAGCCCGAA 61.982 63.158 0.63 0.00 34.47 4.30
79 80 2.505557 CGTCGTGGTAGCCCGAAC 60.506 66.667 0.00 0.00 34.47 3.95
80 81 2.968206 GTCGTGGTAGCCCGAACT 59.032 61.111 0.00 0.00 34.47 3.01
81 82 1.291272 GTCGTGGTAGCCCGAACTT 59.709 57.895 0.00 0.00 34.47 2.66
82 83 0.320160 GTCGTGGTAGCCCGAACTTT 60.320 55.000 0.00 0.00 34.47 2.66
83 84 0.037975 TCGTGGTAGCCCGAACTTTC 60.038 55.000 0.00 0.00 0.00 2.62
85 86 0.675837 GTGGTAGCCCGAACTTTCCC 60.676 60.000 0.00 0.00 0.00 3.97
86 87 1.449070 GGTAGCCCGAACTTTCCCG 60.449 63.158 0.00 0.00 0.00 5.14
88 89 3.319441 TAGCCCGAACTTTCCCGGC 62.319 63.158 0.00 6.62 44.07 6.13
110 111 3.195002 CGGTAGCATGGTGGCGTG 61.195 66.667 7.89 0.00 39.27 5.34
131 132 2.125912 GCAGCGAGGCGAGAAAGA 60.126 61.111 0.00 0.00 0.00 2.52
133 134 1.214062 CAGCGAGGCGAGAAAGAGT 59.786 57.895 0.00 0.00 0.00 3.24
134 135 1.075425 CAGCGAGGCGAGAAAGAGTG 61.075 60.000 0.00 0.00 0.00 3.51
135 136 1.807573 GCGAGGCGAGAAAGAGTGG 60.808 63.158 0.00 0.00 0.00 4.00
136 137 1.587054 CGAGGCGAGAAAGAGTGGT 59.413 57.895 0.00 0.00 0.00 4.16
137 138 0.734253 CGAGGCGAGAAAGAGTGGTG 60.734 60.000 0.00 0.00 0.00 4.17
138 139 0.390472 GAGGCGAGAAAGAGTGGTGG 60.390 60.000 0.00 0.00 0.00 4.61
139 140 0.832135 AGGCGAGAAAGAGTGGTGGA 60.832 55.000 0.00 0.00 0.00 4.02
140 141 0.390472 GGCGAGAAAGAGTGGTGGAG 60.390 60.000 0.00 0.00 0.00 3.86
141 142 0.603569 GCGAGAAAGAGTGGTGGAGA 59.396 55.000 0.00 0.00 0.00 3.71
143 144 2.163509 CGAGAAAGAGTGGTGGAGAGA 58.836 52.381 0.00 0.00 0.00 3.10
145 146 1.899142 AGAAAGAGTGGTGGAGAGAGC 59.101 52.381 0.00 0.00 0.00 4.09
147 148 1.254284 AAGAGTGGTGGAGAGAGCGG 61.254 60.000 0.00 0.00 0.00 5.52
148 149 3.363844 GAGTGGTGGAGAGAGCGGC 62.364 68.421 0.00 0.00 0.00 6.53
149 150 3.386237 GTGGTGGAGAGAGCGGCT 61.386 66.667 0.00 0.00 0.00 5.52
150 151 2.052690 GTGGTGGAGAGAGCGGCTA 61.053 63.158 0.60 0.00 0.00 3.93
152 153 1.323271 TGGTGGAGAGAGCGGCTAAG 61.323 60.000 0.60 0.00 0.00 2.18
156 157 1.460273 GGAGAGAGCGGCTAAGGGAG 61.460 65.000 0.60 0.00 0.00 4.30
164 165 2.882876 GCTAAGGGAGCGTGACGA 59.117 61.111 10.10 0.00 42.62 4.20
165 166 1.226717 GCTAAGGGAGCGTGACGAG 60.227 63.158 10.10 0.00 42.62 4.18
166 167 1.433879 CTAAGGGAGCGTGACGAGG 59.566 63.158 10.10 0.00 0.00 4.63
167 168 2.615262 CTAAGGGAGCGTGACGAGGC 62.615 65.000 10.10 0.00 0.00 4.70
170 171 4.357947 GGAGCGTGACGAGGCACA 62.358 66.667 10.10 0.00 38.69 4.57
172 173 3.268965 GAGCGTGACGAGGCACAGA 62.269 63.158 10.10 0.00 38.69 3.41
173 174 2.807045 GCGTGACGAGGCACAGAG 60.807 66.667 10.10 0.00 38.69 3.35
174 175 2.807045 CGTGACGAGGCACAGAGC 60.807 66.667 9.95 0.00 44.65 4.09
183 184 3.257933 GCACAGAGCGGTGGAAAG 58.742 61.111 0.00 0.00 39.19 2.62
185 186 2.032681 ACAGAGCGGTGGAAAGGC 59.967 61.111 0.00 0.00 0.00 4.35
186 187 3.121030 CAGAGCGGTGGAAAGGCG 61.121 66.667 0.00 0.00 0.00 5.52
193 194 3.423154 GTGGAAAGGCGCGTGGAG 61.423 66.667 8.43 0.00 0.00 3.86
194 195 4.697756 TGGAAAGGCGCGTGGAGG 62.698 66.667 8.43 0.00 0.00 4.30
204 205 2.815308 CGTGGAGGCCGCTAGATT 59.185 61.111 6.40 0.00 0.00 2.40
205 206 2.038690 CGTGGAGGCCGCTAGATTA 58.961 57.895 6.40 0.00 0.00 1.75
206 207 0.603569 CGTGGAGGCCGCTAGATTAT 59.396 55.000 6.40 0.00 0.00 1.28
207 208 1.816835 CGTGGAGGCCGCTAGATTATA 59.183 52.381 6.40 0.00 0.00 0.98
209 210 3.305813 CGTGGAGGCCGCTAGATTATAAA 60.306 47.826 6.40 0.00 0.00 1.40
210 211 4.246458 GTGGAGGCCGCTAGATTATAAAG 58.754 47.826 6.40 0.00 0.00 1.85
211 212 3.263261 GGAGGCCGCTAGATTATAAAGC 58.737 50.000 6.40 0.00 0.00 3.51
212 213 3.306780 GGAGGCCGCTAGATTATAAAGCA 60.307 47.826 6.40 0.00 35.98 3.91
213 214 3.665190 AGGCCGCTAGATTATAAAGCAC 58.335 45.455 0.00 0.53 35.98 4.40
215 216 2.159827 GCCGCTAGATTATAAAGCACGC 60.160 50.000 8.07 5.18 35.98 5.34
216 217 2.412089 CCGCTAGATTATAAAGCACGCC 59.588 50.000 8.07 0.00 35.98 5.68
217 218 2.090658 CGCTAGATTATAAAGCACGCCG 59.909 50.000 8.07 0.00 35.98 6.46
218 219 2.412089 GCTAGATTATAAAGCACGCCGG 59.588 50.000 0.00 0.00 36.26 6.13
219 220 2.902705 AGATTATAAAGCACGCCGGA 57.097 45.000 5.05 0.00 0.00 5.14
220 221 2.480845 AGATTATAAAGCACGCCGGAC 58.519 47.619 5.05 0.00 0.00 4.79
261 262 3.240353 GCGCGCGCCATCTTTTTC 61.240 61.111 42.83 12.59 34.56 2.29
262 263 2.576847 CGCGCGCCATCTTTTTCC 60.577 61.111 27.72 0.00 0.00 3.13
263 264 2.576847 GCGCGCCATCTTTTTCCG 60.577 61.111 23.24 0.00 0.00 4.30
264 265 2.576847 CGCGCCATCTTTTTCCGC 60.577 61.111 0.00 0.00 41.10 5.54
265 266 2.576847 GCGCCATCTTTTTCCGCG 60.577 61.111 0.00 0.00 45.35 6.46
267 268 1.511887 CGCCATCTTTTTCCGCGTG 60.512 57.895 4.92 0.00 38.12 5.34
271 272 1.083489 CATCTTTTTCCGCGTGCCTA 58.917 50.000 4.92 0.00 0.00 3.93
272 273 1.062587 CATCTTTTTCCGCGTGCCTAG 59.937 52.381 4.92 0.00 0.00 3.02
273 274 0.319083 TCTTTTTCCGCGTGCCTAGA 59.681 50.000 4.92 0.00 0.00 2.43
274 275 1.066430 TCTTTTTCCGCGTGCCTAGAT 60.066 47.619 4.92 0.00 0.00 1.98
275 276 1.327764 CTTTTTCCGCGTGCCTAGATC 59.672 52.381 4.92 0.00 0.00 2.75
276 277 0.535335 TTTTCCGCGTGCCTAGATCT 59.465 50.000 4.92 0.00 0.00 2.75
277 278 0.102481 TTTCCGCGTGCCTAGATCTC 59.898 55.000 4.92 0.00 0.00 2.75
278 279 0.752009 TTCCGCGTGCCTAGATCTCT 60.752 55.000 4.92 0.00 0.00 3.10
279 280 1.167155 TCCGCGTGCCTAGATCTCTC 61.167 60.000 4.92 0.00 0.00 3.20
280 281 1.082431 CGCGTGCCTAGATCTCTCG 60.082 63.158 0.00 0.00 0.00 4.04
282 283 1.082431 CGTGCCTAGATCTCTCGCG 60.082 63.158 0.00 0.00 0.00 5.87
284 285 2.257067 GCCTAGATCTCTCGCGCC 59.743 66.667 0.00 0.00 0.00 6.53
287 288 3.602924 CTAGATCTCTCGCGCCCGC 62.603 68.421 0.00 1.98 37.85 6.13
301 302 4.697756 CCGCTGGAGTGCCCGAAA 62.698 66.667 0.00 0.00 37.93 3.46
302 303 2.668212 CGCTGGAGTGCCCGAAAA 60.668 61.111 0.00 0.00 37.93 2.29
303 304 2.954611 GCTGGAGTGCCCGAAAAC 59.045 61.111 0.00 0.00 37.93 2.43
304 305 1.896660 GCTGGAGTGCCCGAAAACA 60.897 57.895 0.00 0.00 37.93 2.83
308 309 4.475527 AGTGCCCGAAAACACTCC 57.524 55.556 0.00 0.00 43.55 3.85
309 310 1.597027 AGTGCCCGAAAACACTCCG 60.597 57.895 0.00 0.00 43.55 4.63
310 311 2.975799 TGCCCGAAAACACTCCGC 60.976 61.111 0.00 0.00 0.00 5.54
311 312 4.084888 GCCCGAAAACACTCCGCG 62.085 66.667 0.00 0.00 0.00 6.46
312 313 4.084888 CCCGAAAACACTCCGCGC 62.085 66.667 0.00 0.00 0.00 6.86
313 314 4.424430 CCGAAAACACTCCGCGCG 62.424 66.667 25.67 25.67 0.00 6.86
315 316 3.712881 GAAAACACTCCGCGCGCT 61.713 61.111 30.48 7.24 0.00 5.92
316 317 2.356553 AAAACACTCCGCGCGCTA 60.357 55.556 30.48 16.24 0.00 4.26
317 318 1.893168 GAAAACACTCCGCGCGCTAA 61.893 55.000 30.48 15.83 0.00 3.09
318 319 1.500512 AAAACACTCCGCGCGCTAAA 61.501 50.000 30.48 13.09 0.00 1.85
319 320 1.500512 AAACACTCCGCGCGCTAAAA 61.501 50.000 30.48 10.40 0.00 1.52
321 322 3.116531 ACTCCGCGCGCTAAAACC 61.117 61.111 30.48 0.00 0.00 3.27
322 323 3.861263 CTCCGCGCGCTAAAACCC 61.861 66.667 30.48 0.00 0.00 4.11
324 325 4.454717 CCGCGCGCTAAAACCCAC 62.455 66.667 30.48 0.00 0.00 4.61
325 326 4.787299 CGCGCGCTAAAACCCACG 62.787 66.667 30.48 5.07 0.00 4.94
326 327 3.719144 GCGCGCTAAAACCCACGT 61.719 61.111 26.67 0.00 0.00 4.49
328 329 1.280444 CGCGCTAAAACCCACGTTT 59.720 52.632 5.56 0.00 44.20 3.60
329 330 0.512085 CGCGCTAAAACCCACGTTTA 59.488 50.000 5.56 0.00 41.42 2.01
330 331 1.722435 CGCGCTAAAACCCACGTTTAC 60.722 52.381 5.56 0.00 41.42 2.01
331 332 1.400113 GCGCTAAAACCCACGTTTACC 60.400 52.381 0.00 0.00 41.42 2.85
332 333 2.145536 CGCTAAAACCCACGTTTACCT 58.854 47.619 0.00 0.00 41.42 3.08
333 334 2.158254 CGCTAAAACCCACGTTTACCTC 59.842 50.000 0.00 0.00 41.42 3.85
340 341 3.101428 ACGTTTACCTCGTGCGCG 61.101 61.111 14.79 14.79 40.07 6.86
341 342 3.101428 CGTTTACCTCGTGCGCGT 61.101 61.111 20.50 2.64 39.49 6.01
345 346 0.656785 TTTACCTCGTGCGCGTTTTT 59.343 45.000 20.50 5.37 39.49 1.94
375 376 6.748333 CAATGTTGGAGATGCTCTTAGAAA 57.252 37.500 0.00 0.00 0.00 2.52
376 377 7.149569 CAATGTTGGAGATGCTCTTAGAAAA 57.850 36.000 0.00 0.00 0.00 2.29
377 378 7.596494 CAATGTTGGAGATGCTCTTAGAAAAA 58.404 34.615 0.00 0.00 0.00 1.94
381 382 5.195940 TGGAGATGCTCTTAGAAAAATGGG 58.804 41.667 0.00 0.00 0.00 4.00
382 383 4.037327 GGAGATGCTCTTAGAAAAATGGGC 59.963 45.833 0.00 0.00 0.00 5.36
383 384 4.603131 AGATGCTCTTAGAAAAATGGGCA 58.397 39.130 0.00 0.00 0.00 5.36
384 385 4.643784 AGATGCTCTTAGAAAAATGGGCAG 59.356 41.667 0.00 0.00 32.04 4.85
386 387 4.012374 TGCTCTTAGAAAAATGGGCAGAG 58.988 43.478 0.00 0.00 0.00 3.35
387 388 4.013050 GCTCTTAGAAAAATGGGCAGAGT 58.987 43.478 0.00 0.00 30.86 3.24
388 389 5.186198 GCTCTTAGAAAAATGGGCAGAGTA 58.814 41.667 0.00 0.00 30.86 2.59
390 391 6.238593 GCTCTTAGAAAAATGGGCAGAGTATG 60.239 42.308 0.00 0.00 30.86 2.39
391 392 6.721318 TCTTAGAAAAATGGGCAGAGTATGT 58.279 36.000 0.00 0.00 0.00 2.29
392 393 6.599244 TCTTAGAAAAATGGGCAGAGTATGTG 59.401 38.462 0.00 0.00 0.00 3.21
393 394 4.019174 AGAAAAATGGGCAGAGTATGTGG 58.981 43.478 0.00 0.00 0.00 4.17
399 400 1.884926 GCAGAGTATGTGGCCGCTC 60.885 63.158 18.96 6.51 0.00 5.03
400 401 1.819229 CAGAGTATGTGGCCGCTCT 59.181 57.895 18.96 12.89 38.69 4.09
401 402 0.176680 CAGAGTATGTGGCCGCTCTT 59.823 55.000 18.96 5.04 36.31 2.85
402 403 0.461961 AGAGTATGTGGCCGCTCTTC 59.538 55.000 18.96 9.86 35.02 2.87
403 404 0.175760 GAGTATGTGGCCGCTCTTCA 59.824 55.000 18.96 0.00 0.00 3.02
404 405 0.613260 AGTATGTGGCCGCTCTTCAA 59.387 50.000 18.96 0.00 0.00 2.69
405 406 0.727398 GTATGTGGCCGCTCTTCAAC 59.273 55.000 18.96 0.00 0.00 3.18
406 407 0.739462 TATGTGGCCGCTCTTCAACG 60.739 55.000 18.96 0.00 0.00 4.10
407 408 2.665185 GTGGCCGCTCTTCAACGT 60.665 61.111 9.68 0.00 0.00 3.99
408 409 2.357034 TGGCCGCTCTTCAACGTC 60.357 61.111 0.00 0.00 0.00 4.34
410 411 1.741770 GGCCGCTCTTCAACGTCAT 60.742 57.895 0.00 0.00 0.00 3.06
411 412 1.696832 GGCCGCTCTTCAACGTCATC 61.697 60.000 0.00 0.00 0.00 2.92
412 413 1.014044 GCCGCTCTTCAACGTCATCA 61.014 55.000 0.00 0.00 0.00 3.07
414 415 1.590238 CCGCTCTTCAACGTCATCATC 59.410 52.381 0.00 0.00 0.00 2.92
417 418 3.435566 GCTCTTCAACGTCATCATCGTA 58.564 45.455 0.00 0.00 40.69 3.43
418 419 3.857665 GCTCTTCAACGTCATCATCGTAA 59.142 43.478 0.00 0.00 40.69 3.18
419 420 4.504461 GCTCTTCAACGTCATCATCGTAAT 59.496 41.667 0.00 0.00 40.69 1.89
420 421 5.685954 GCTCTTCAACGTCATCATCGTAATA 59.314 40.000 0.00 0.00 40.69 0.98
421 422 6.363626 GCTCTTCAACGTCATCATCGTAATAT 59.636 38.462 0.00 0.00 40.69 1.28
422 423 7.537649 GCTCTTCAACGTCATCATCGTAATATA 59.462 37.037 0.00 0.00 40.69 0.86
423 424 9.394477 CTCTTCAACGTCATCATCGTAATATAA 57.606 33.333 0.00 0.00 40.69 0.98
424 425 9.908152 TCTTCAACGTCATCATCGTAATATAAT 57.092 29.630 0.00 0.00 40.69 1.28
425 426 9.943465 CTTCAACGTCATCATCGTAATATAATG 57.057 33.333 0.00 0.00 40.69 1.90
427 428 7.544217 TCAACGTCATCATCGTAATATAATGGG 59.456 37.037 0.00 0.00 40.69 4.00
428 429 7.165460 ACGTCATCATCGTAATATAATGGGA 57.835 36.000 0.00 0.00 39.78 4.37
429 430 7.258441 ACGTCATCATCGTAATATAATGGGAG 58.742 38.462 0.00 0.00 39.78 4.30
432 433 9.737427 GTCATCATCGTAATATAATGGGAGTAG 57.263 37.037 0.00 0.00 0.00 2.57
445 446 2.474410 GGAGTAGTTCCCACTTGTGG 57.526 55.000 12.54 12.54 40.37 4.17
446 447 1.697982 GGAGTAGTTCCCACTTGTGGT 59.302 52.381 17.35 2.91 40.37 4.16
448 449 3.325716 GGAGTAGTTCCCACTTGTGGTAA 59.674 47.826 17.35 6.39 40.37 2.85
450 451 5.161943 AGTAGTTCCCACTTGTGGTAATC 57.838 43.478 17.35 5.91 34.06 1.75
452 453 6.021030 AGTAGTTCCCACTTGTGGTAATCTA 58.979 40.000 17.35 10.87 34.06 1.98
453 454 5.422214 AGTTCCCACTTGTGGTAATCTAG 57.578 43.478 17.35 2.02 0.00 2.43
454 455 4.225267 AGTTCCCACTTGTGGTAATCTAGG 59.775 45.833 17.35 1.36 0.00 3.02
456 457 2.238646 CCCACTTGTGGTAATCTAGGCA 59.761 50.000 17.35 0.00 0.00 4.75
457 458 3.117888 CCCACTTGTGGTAATCTAGGCAT 60.118 47.826 17.35 0.00 0.00 4.40
458 459 4.130118 CCACTTGTGGTAATCTAGGCATC 58.870 47.826 11.39 0.00 0.00 3.91
459 460 3.804325 CACTTGTGGTAATCTAGGCATCG 59.196 47.826 0.00 0.00 0.00 3.84
460 461 2.526304 TGTGGTAATCTAGGCATCGC 57.474 50.000 0.00 0.00 0.00 4.58
462 463 2.368548 TGTGGTAATCTAGGCATCGCAT 59.631 45.455 0.00 0.00 0.00 4.73
463 464 2.738846 GTGGTAATCTAGGCATCGCATG 59.261 50.000 0.00 0.00 0.00 4.06
464 465 2.368548 TGGTAATCTAGGCATCGCATGT 59.631 45.455 0.00 0.00 0.00 3.21
466 467 2.627515 AATCTAGGCATCGCATGTGT 57.372 45.000 6.09 0.00 0.00 3.72
506 507 6.721571 TTTTACCAGCTCTATCAAAACTCG 57.278 37.500 0.00 0.00 0.00 4.18
507 508 5.654603 TTACCAGCTCTATCAAAACTCGA 57.345 39.130 0.00 0.00 0.00 4.04
508 509 4.116747 ACCAGCTCTATCAAAACTCGAG 57.883 45.455 11.84 11.84 0.00 4.04
509 510 3.764434 ACCAGCTCTATCAAAACTCGAGA 59.236 43.478 21.68 0.00 0.00 4.04
510 511 4.404073 ACCAGCTCTATCAAAACTCGAGAT 59.596 41.667 21.68 3.75 0.00 2.75
511 512 5.105146 ACCAGCTCTATCAAAACTCGAGATT 60.105 40.000 21.68 11.42 0.00 2.40
512 513 6.096987 ACCAGCTCTATCAAAACTCGAGATTA 59.903 38.462 21.68 0.00 0.00 1.75
514 515 7.421599 CAGCTCTATCAAAACTCGAGATTAGA 58.578 38.462 21.68 11.93 0.00 2.10
515 516 7.918033 CAGCTCTATCAAAACTCGAGATTAGAA 59.082 37.037 21.68 3.16 0.00 2.10
517 518 9.255304 GCTCTATCAAAACTCGAGATTAGAAAT 57.745 33.333 21.68 7.99 0.00 2.17
519 520 9.035607 TCTATCAAAACTCGAGATTAGAAATGC 57.964 33.333 21.68 0.00 0.00 3.56
521 522 7.433708 TCAAAACTCGAGATTAGAAATGCAA 57.566 32.000 21.68 0.00 0.00 4.08
522 523 8.044060 TCAAAACTCGAGATTAGAAATGCAAT 57.956 30.769 21.68 0.00 0.00 3.56
523 524 7.964559 TCAAAACTCGAGATTAGAAATGCAATG 59.035 33.333 21.68 4.84 0.00 2.82
525 526 6.841443 ACTCGAGATTAGAAATGCAATGAG 57.159 37.500 21.68 0.00 0.00 2.90
527 528 6.478344 ACTCGAGATTAGAAATGCAATGAGAC 59.522 38.462 21.68 0.00 0.00 3.36
528 529 6.577103 TCGAGATTAGAAATGCAATGAGACT 58.423 36.000 0.00 0.00 0.00 3.24
529 530 6.478016 TCGAGATTAGAAATGCAATGAGACTG 59.522 38.462 0.00 0.00 0.00 3.51
530 531 6.292757 CGAGATTAGAAATGCAATGAGACTGG 60.293 42.308 0.00 0.00 0.00 4.00
531 532 5.826737 AGATTAGAAATGCAATGAGACTGGG 59.173 40.000 0.00 0.00 0.00 4.45
532 533 3.726557 AGAAATGCAATGAGACTGGGA 57.273 42.857 0.00 0.00 0.00 4.37
534 535 2.885135 AATGCAATGAGACTGGGACA 57.115 45.000 0.00 0.00 0.00 4.02
535 536 2.119801 ATGCAATGAGACTGGGACAC 57.880 50.000 0.00 0.00 0.00 3.67
536 537 0.320683 TGCAATGAGACTGGGACACG 60.321 55.000 0.00 0.00 0.00 4.49
538 539 1.714794 CAATGAGACTGGGACACGTC 58.285 55.000 0.00 0.00 36.97 4.34
541 542 0.608308 TGAGACTGGGACACGTCGAT 60.608 55.000 0.00 0.00 39.94 3.59
542 543 0.099082 GAGACTGGGACACGTCGATC 59.901 60.000 0.00 0.00 39.94 3.69
543 544 0.608308 AGACTGGGACACGTCGATCA 60.608 55.000 0.00 0.00 39.94 2.92
544 545 0.242825 GACTGGGACACGTCGATCAA 59.757 55.000 0.00 0.00 29.98 2.57
545 546 0.243907 ACTGGGACACGTCGATCAAG 59.756 55.000 0.00 1.09 0.00 3.02
546 547 1.078759 CTGGGACACGTCGATCAAGC 61.079 60.000 0.00 0.00 0.00 4.01
547 548 1.080093 GGGACACGTCGATCAAGCA 60.080 57.895 0.00 0.00 0.00 3.91
548 549 1.078759 GGGACACGTCGATCAAGCAG 61.079 60.000 0.00 0.00 0.00 4.24
549 550 0.109272 GGACACGTCGATCAAGCAGA 60.109 55.000 0.00 0.00 0.00 4.26
551 552 1.585668 GACACGTCGATCAAGCAGATG 59.414 52.381 0.00 0.00 37.00 2.90
553 554 1.585668 CACGTCGATCAAGCAGATGAC 59.414 52.381 0.00 4.68 37.00 3.06
554 555 1.474478 ACGTCGATCAAGCAGATGACT 59.526 47.619 0.00 0.00 37.00 3.41
555 556 2.115595 CGTCGATCAAGCAGATGACTC 58.884 52.381 0.00 4.70 37.00 3.36
556 557 2.468831 GTCGATCAAGCAGATGACTCC 58.531 52.381 0.00 0.00 37.00 3.85
557 558 2.100584 GTCGATCAAGCAGATGACTCCT 59.899 50.000 0.00 0.00 37.00 3.69
558 559 3.316588 GTCGATCAAGCAGATGACTCCTA 59.683 47.826 0.00 0.00 37.00 2.94
559 560 3.316588 TCGATCAAGCAGATGACTCCTAC 59.683 47.826 0.00 0.00 37.00 3.18
560 561 3.067320 CGATCAAGCAGATGACTCCTACA 59.933 47.826 0.00 0.00 37.00 2.74
561 562 3.876274 TCAAGCAGATGACTCCTACAC 57.124 47.619 0.00 0.00 0.00 2.90
562 563 3.435275 TCAAGCAGATGACTCCTACACT 58.565 45.455 0.00 0.00 0.00 3.55
563 564 3.834813 TCAAGCAGATGACTCCTACACTT 59.165 43.478 0.00 0.00 0.00 3.16
819 820 1.589803 AAAGGTTGTTTACTCGCGCT 58.410 45.000 5.56 0.00 0.00 5.92
824 825 2.034076 GTTGTTTACTCGCGCTTGTTG 58.966 47.619 5.56 0.00 0.00 3.33
832 833 0.815095 TCGCGCTTGTTGATCTCCTA 59.185 50.000 5.56 0.00 0.00 2.94
833 834 0.924090 CGCGCTTGTTGATCTCCTAC 59.076 55.000 5.56 0.00 0.00 3.18
834 835 1.469940 CGCGCTTGTTGATCTCCTACT 60.470 52.381 5.56 0.00 0.00 2.57
835 836 2.622436 GCGCTTGTTGATCTCCTACTT 58.378 47.619 0.00 0.00 0.00 2.24
836 837 2.349886 GCGCTTGTTGATCTCCTACTTG 59.650 50.000 0.00 0.00 0.00 3.16
838 839 2.680339 GCTTGTTGATCTCCTACTTGGC 59.320 50.000 0.00 0.00 35.26 4.52
839 840 3.620966 GCTTGTTGATCTCCTACTTGGCT 60.621 47.826 0.00 0.00 35.26 4.75
840 841 4.583871 CTTGTTGATCTCCTACTTGGCTT 58.416 43.478 0.00 0.00 35.26 4.35
841 842 4.640771 TGTTGATCTCCTACTTGGCTTT 57.359 40.909 0.00 0.00 35.26 3.51
842 843 4.326826 TGTTGATCTCCTACTTGGCTTTG 58.673 43.478 0.00 0.00 35.26 2.77
844 845 2.239654 TGATCTCCTACTTGGCTTTGGG 59.760 50.000 0.00 0.00 35.26 4.12
845 846 0.328258 TCTCCTACTTGGCTTTGGGC 59.672 55.000 0.00 0.00 40.90 5.36
846 847 0.329596 CTCCTACTTGGCTTTGGGCT 59.670 55.000 0.00 0.00 41.46 5.19
847 848 0.777446 TCCTACTTGGCTTTGGGCTT 59.223 50.000 0.00 0.00 41.46 4.35
848 849 1.146982 TCCTACTTGGCTTTGGGCTTT 59.853 47.619 0.00 0.00 41.46 3.51
850 851 1.273327 CTACTTGGCTTTGGGCTTTGG 59.727 52.381 0.00 0.00 41.46 3.28
851 852 1.301953 CTTGGCTTTGGGCTTTGGC 60.302 57.895 0.00 0.00 41.46 4.52
852 853 3.162505 TTGGCTTTGGGCTTTGGCG 62.163 57.895 0.00 0.00 41.46 5.69
853 854 3.302344 GGCTTTGGGCTTTGGCGA 61.302 61.111 0.00 0.00 41.46 5.54
855 856 1.153765 GCTTTGGGCTTTGGCGATC 60.154 57.895 0.00 0.00 39.81 3.69
856 857 1.512694 CTTTGGGCTTTGGCGATCC 59.487 57.895 0.00 0.00 39.81 3.36
857 858 2.270297 CTTTGGGCTTTGGCGATCCG 62.270 60.000 0.00 0.00 39.81 4.18
870 871 2.202932 ATCCGCACGTGCTGGATC 60.203 61.111 38.02 16.66 44.73 3.36
871 872 4.794439 TCCGCACGTGCTGGATCG 62.794 66.667 34.50 21.87 38.26 3.69
872 873 4.794439 CCGCACGTGCTGGATCGA 62.794 66.667 33.41 0.00 39.32 3.59
873 874 2.809174 CGCACGTGCTGGATCGAA 60.809 61.111 35.27 0.00 39.32 3.71
874 875 2.167219 CGCACGTGCTGGATCGAAT 61.167 57.895 35.27 0.00 39.32 3.34
875 876 1.638467 GCACGTGCTGGATCGAATC 59.362 57.895 32.55 0.00 38.21 2.52
876 877 1.083806 GCACGTGCTGGATCGAATCA 61.084 55.000 32.55 0.00 38.21 2.57
877 878 0.926155 CACGTGCTGGATCGAATCAG 59.074 55.000 0.82 12.33 0.00 2.90
887 888 0.032678 ATCGAATCAGCAGTAGCCCG 59.967 55.000 0.00 0.00 43.56 6.13
888 889 1.141881 CGAATCAGCAGTAGCCCGT 59.858 57.895 0.00 0.00 43.56 5.28
889 890 1.148157 CGAATCAGCAGTAGCCCGTG 61.148 60.000 0.00 0.00 43.56 4.94
890 891 0.175760 GAATCAGCAGTAGCCCGTGA 59.824 55.000 0.00 0.00 43.56 4.35
891 892 0.833287 AATCAGCAGTAGCCCGTGAT 59.167 50.000 0.00 0.00 43.56 3.06
892 893 1.704641 ATCAGCAGTAGCCCGTGATA 58.295 50.000 0.00 0.00 43.56 2.15
894 895 0.595053 CAGCAGTAGCCCGTGATACG 60.595 60.000 0.00 0.00 43.56 3.06
924 2416 0.797249 CTTCGCGAAGGTACTGACGG 60.797 60.000 35.58 11.60 40.86 4.79
925 2417 1.518056 TTCGCGAAGGTACTGACGGT 61.518 55.000 19.38 0.00 40.86 4.83
962 2454 1.895020 TTTCTACGTGGCGGGCATCT 61.895 55.000 7.75 0.00 0.00 2.90
970 2462 3.264897 GCGGGCATCTACGTGCTG 61.265 66.667 0.00 0.00 44.45 4.41
1037 2568 1.153745 CACGCTCTAGGCCAGTCAC 60.154 63.158 5.01 0.00 37.74 3.67
1038 2569 2.352032 ACGCTCTAGGCCAGTCACC 61.352 63.158 5.01 0.00 37.74 4.02
1039 2570 2.351244 CGCTCTAGGCCAGTCACCA 61.351 63.158 5.01 0.00 37.74 4.17
1040 2571 1.519719 GCTCTAGGCCAGTCACCAG 59.480 63.158 5.01 0.00 34.27 4.00
1041 2572 1.261238 GCTCTAGGCCAGTCACCAGT 61.261 60.000 5.01 0.00 34.27 4.00
1042 2573 0.820871 CTCTAGGCCAGTCACCAGTC 59.179 60.000 5.01 0.00 0.00 3.51
1043 2574 0.114364 TCTAGGCCAGTCACCAGTCA 59.886 55.000 5.01 0.00 0.00 3.41
1052 2583 0.798771 GTCACCAGTCAGTCGATCGC 60.799 60.000 11.09 5.80 0.00 4.58
1069 2600 1.427020 GCAGCCAAGTCGAGCAATC 59.573 57.895 0.00 0.00 0.00 2.67
1070 2601 1.300971 GCAGCCAAGTCGAGCAATCA 61.301 55.000 0.00 0.00 0.00 2.57
1077 2608 1.160137 AGTCGAGCAATCACCAAAGC 58.840 50.000 0.00 0.00 0.00 3.51
1094 2646 4.846137 CCAAAGCGATCTCTTGTTTTTACG 59.154 41.667 0.00 0.00 0.00 3.18
1096 2648 2.418714 GCGATCTCTTGTTTTTACGCG 58.581 47.619 3.53 3.53 35.98 6.01
1122 2674 3.011119 TCGAGAGGAAGTCAGAAGTAGC 58.989 50.000 0.00 0.00 0.00 3.58
1126 2678 3.761752 AGAGGAAGTCAGAAGTAGCAGTC 59.238 47.826 0.00 0.00 0.00 3.51
1152 2704 5.607477 AGTTCGTTTGATCCAGTTCAGTTA 58.393 37.500 0.00 0.00 0.00 2.24
1155 2707 5.607477 TCGTTTGATCCAGTTCAGTTAAGT 58.393 37.500 0.00 0.00 0.00 2.24
1156 2708 6.751157 TCGTTTGATCCAGTTCAGTTAAGTA 58.249 36.000 0.00 0.00 0.00 2.24
1234 2790 3.959462 GGCCATACCCAGGTACGA 58.041 61.111 0.00 0.00 33.01 3.43
1235 2791 1.746517 GGCCATACCCAGGTACGAG 59.253 63.158 0.00 0.00 33.01 4.18
1239 2804 0.248907 CATACCCAGGTACGAGCGTG 60.249 60.000 5.69 0.00 33.01 5.34
1240 2805 2.012902 ATACCCAGGTACGAGCGTGC 62.013 60.000 5.69 4.00 33.01 5.34
1251 2816 4.831307 AGCGTGCGTCGACGATCC 62.831 66.667 39.74 22.99 42.10 3.36
1255 2837 3.060000 TGCGTCGACGATCCACCT 61.060 61.111 39.74 0.00 43.02 4.00
1279 2861 4.764336 CCGCGTGCCTGCATTGTG 62.764 66.667 4.92 0.00 34.15 3.33
1280 2862 4.029186 CGCGTGCCTGCATTGTGT 62.029 61.111 0.00 0.00 34.15 3.72
1281 2863 2.126734 GCGTGCCTGCATTGTGTC 60.127 61.111 0.00 0.00 34.15 3.67
1282 2864 2.620112 GCGTGCCTGCATTGTGTCT 61.620 57.895 0.00 0.00 34.15 3.41
1283 2865 1.208358 CGTGCCTGCATTGTGTCTG 59.792 57.895 0.00 0.00 0.00 3.51
1284 2866 1.229975 CGTGCCTGCATTGTGTCTGA 61.230 55.000 0.00 0.00 0.00 3.27
1285 2867 1.171308 GTGCCTGCATTGTGTCTGAT 58.829 50.000 0.00 0.00 0.00 2.90
1286 2868 2.358957 GTGCCTGCATTGTGTCTGATA 58.641 47.619 0.00 0.00 0.00 2.15
1289 2871 4.576053 GTGCCTGCATTGTGTCTGATAATA 59.424 41.667 0.00 0.00 0.00 0.98
1292 2874 5.696822 CCTGCATTGTGTCTGATAATATGC 58.303 41.667 12.15 12.15 37.87 3.14
1299 2881 8.565416 CATTGTGTCTGATAATATGCTGTGATT 58.435 33.333 0.00 0.00 0.00 2.57
1310 2892 0.602638 GCTGTGATTGTCCGTGGTGA 60.603 55.000 0.00 0.00 0.00 4.02
1324 2911 2.783135 GTGGTGATTTGCAGGAGAAGA 58.217 47.619 0.00 0.00 0.00 2.87
1326 5057 1.734465 GGTGATTTGCAGGAGAAGACG 59.266 52.381 0.00 0.00 0.00 4.18
1440 5171 4.335647 ACGGAGGCCACCAAGCAG 62.336 66.667 20.07 4.76 0.00 4.24
1511 5242 2.046892 CAAGGCTGCTAGCACGGT 60.047 61.111 14.93 0.00 44.75 4.83
1559 5356 2.358737 CAAGGACCAGACCGGCAC 60.359 66.667 0.00 0.00 39.03 5.01
1585 5382 2.181584 GGCGAGAAGACGGAGAAGA 58.818 57.895 0.00 0.00 0.00 2.87
1796 10674 0.100503 GACAACACCAACACCAGCAC 59.899 55.000 0.00 0.00 0.00 4.40
1798 10676 1.000270 AACACCAACACCAGCACCA 60.000 52.632 0.00 0.00 0.00 4.17
1800 10678 1.752310 CACCAACACCAGCACCACA 60.752 57.895 0.00 0.00 0.00 4.17
1802 10689 1.152984 CCAACACCAGCACCACAGA 60.153 57.895 0.00 0.00 0.00 3.41
1838 10733 1.678627 CGTCAGGGATCACCACTAGAG 59.321 57.143 0.00 0.00 43.89 2.43
1875 10770 3.181465 TGCTTTCGTTTCCTTCTCTCACT 60.181 43.478 0.00 0.00 0.00 3.41
1876 10771 4.038763 TGCTTTCGTTTCCTTCTCTCACTA 59.961 41.667 0.00 0.00 0.00 2.74
1877 10772 4.623595 GCTTTCGTTTCCTTCTCTCACTAG 59.376 45.833 0.00 0.00 0.00 2.57
1878 10773 5.774630 CTTTCGTTTCCTTCTCTCACTAGT 58.225 41.667 0.00 0.00 0.00 2.57
1879 10774 5.373981 TTCGTTTCCTTCTCTCACTAGTC 57.626 43.478 0.00 0.00 0.00 2.59
1880 10775 4.395625 TCGTTTCCTTCTCTCACTAGTCA 58.604 43.478 0.00 0.00 0.00 3.41
1881 10776 4.825634 TCGTTTCCTTCTCTCACTAGTCAA 59.174 41.667 0.00 0.00 0.00 3.18
1882 10777 5.477291 TCGTTTCCTTCTCTCACTAGTCAAT 59.523 40.000 0.00 0.00 0.00 2.57
1898 10793 8.390354 CACTAGTCAATACACACATATTTGGTG 58.610 37.037 0.00 0.00 41.95 4.17
1918 10813 4.524328 GGTGGTTCCAGTTTCATGATTTCT 59.476 41.667 0.00 0.00 35.97 2.52
1979 10874 8.627487 TGTATCTTTGTGTTTGTCATTTCAAC 57.373 30.769 0.00 0.00 0.00 3.18
2013 10908 9.849166 ACGATGTAACAATAATAAAAGTTTGGG 57.151 29.630 0.00 0.00 0.00 4.12
2033 10928 4.162698 TGGGATTAAGCTTATACACGTGGT 59.837 41.667 21.57 10.71 0.00 4.16
2039 10934 2.429610 AGCTTATACACGTGGTAGGGTG 59.570 50.000 21.57 4.81 39.98 4.61
2076 10972 0.984230 TGTGACACCTCCCCTCATTC 59.016 55.000 2.45 0.00 0.00 2.67
2077 10973 0.984230 GTGACACCTCCCCTCATTCA 59.016 55.000 0.00 0.00 0.00 2.57
2078 10974 0.984230 TGACACCTCCCCTCATTCAC 59.016 55.000 0.00 0.00 0.00 3.18
2079 10975 0.253327 GACACCTCCCCTCATTCACC 59.747 60.000 0.00 0.00 0.00 4.02
2080 10976 1.208165 ACACCTCCCCTCATTCACCC 61.208 60.000 0.00 0.00 0.00 4.61
2081 10977 1.995626 ACCTCCCCTCATTCACCCG 60.996 63.158 0.00 0.00 0.00 5.28
2082 10978 2.190578 CTCCCCTCATTCACCCGC 59.809 66.667 0.00 0.00 0.00 6.13
2083 10979 3.406595 CTCCCCTCATTCACCCGCC 62.407 68.421 0.00 0.00 0.00 6.13
2084 10980 3.727258 CCCCTCATTCACCCGCCA 61.727 66.667 0.00 0.00 0.00 5.69
2085 10981 2.354729 CCCTCATTCACCCGCCAA 59.645 61.111 0.00 0.00 0.00 4.52
2086 10982 1.304052 CCCTCATTCACCCGCCAAA 60.304 57.895 0.00 0.00 0.00 3.28
2087 10983 0.897863 CCCTCATTCACCCGCCAAAA 60.898 55.000 0.00 0.00 0.00 2.44
2088 10984 1.185315 CCTCATTCACCCGCCAAAAT 58.815 50.000 0.00 0.00 0.00 1.82
2089 10985 1.135024 CCTCATTCACCCGCCAAAATG 60.135 52.381 0.00 0.00 0.00 2.32
2090 10986 1.818060 CTCATTCACCCGCCAAAATGA 59.182 47.619 0.00 0.00 36.83 2.57
2091 10987 2.230992 CTCATTCACCCGCCAAAATGAA 59.769 45.455 0.00 0.00 37.60 2.57
2092 10988 2.630098 TCATTCACCCGCCAAAATGAAA 59.370 40.909 0.00 0.00 35.72 2.69
2093 10989 3.070159 TCATTCACCCGCCAAAATGAAAA 59.930 39.130 0.00 0.00 35.72 2.29
2094 10990 3.760580 TTCACCCGCCAAAATGAAAAT 57.239 38.095 0.00 0.00 0.00 1.82
2095 10991 4.873746 TTCACCCGCCAAAATGAAAATA 57.126 36.364 0.00 0.00 0.00 1.40
2096 10992 4.181309 TCACCCGCCAAAATGAAAATAC 57.819 40.909 0.00 0.00 0.00 1.89
2097 10993 3.574396 TCACCCGCCAAAATGAAAATACA 59.426 39.130 0.00 0.00 0.00 2.29
2098 10994 4.221703 TCACCCGCCAAAATGAAAATACAT 59.778 37.500 0.00 0.00 0.00 2.29
2099 10995 4.566360 CACCCGCCAAAATGAAAATACATC 59.434 41.667 0.00 0.00 0.00 3.06
2100 10996 4.119136 CCCGCCAAAATGAAAATACATCC 58.881 43.478 0.00 0.00 0.00 3.51
2101 10997 4.119136 CCGCCAAAATGAAAATACATCCC 58.881 43.478 0.00 0.00 0.00 3.85
2102 10998 4.119136 CGCCAAAATGAAAATACATCCCC 58.881 43.478 0.00 0.00 0.00 4.81
2103 10999 4.141959 CGCCAAAATGAAAATACATCCCCT 60.142 41.667 0.00 0.00 0.00 4.79
2104 11000 5.359756 GCCAAAATGAAAATACATCCCCTC 58.640 41.667 0.00 0.00 0.00 4.30
2105 11001 5.104982 GCCAAAATGAAAATACATCCCCTCA 60.105 40.000 0.00 0.00 0.00 3.86
2106 11002 6.408434 GCCAAAATGAAAATACATCCCCTCAT 60.408 38.462 0.00 0.00 0.00 2.90
2107 11003 7.567458 CCAAAATGAAAATACATCCCCTCATT 58.433 34.615 0.00 0.00 35.56 2.57
2114 11010 6.544928 AAATACATCCCCTCATTTTGTTCC 57.455 37.500 0.00 0.00 0.00 3.62
2167 11063 2.625790 GAGGATGATCCACTAGCGTCTT 59.374 50.000 14.90 0.00 39.61 3.01
2170 11066 2.941453 TGATCCACTAGCGTCTTCAC 57.059 50.000 0.00 0.00 0.00 3.18
2181 11077 1.148310 CGTCTTCACGCCACAAATCT 58.852 50.000 0.00 0.00 39.69 2.40
2184 11080 2.548057 GTCTTCACGCCACAAATCTTCA 59.452 45.455 0.00 0.00 0.00 3.02
2185 11081 3.003275 GTCTTCACGCCACAAATCTTCAA 59.997 43.478 0.00 0.00 0.00 2.69
2191 11087 4.911610 CACGCCACAAATCTTCAAAACTAG 59.088 41.667 0.00 0.00 0.00 2.57
2199 11095 9.994432 CACAAATCTTCAAAACTAGATGATACC 57.006 33.333 0.00 0.00 31.86 2.73
2201 11097 9.401058 CAAATCTTCAAAACTAGATGATACCCT 57.599 33.333 0.00 0.00 31.86 4.34
2203 11099 6.349300 TCTTCAAAACTAGATGATACCCTGC 58.651 40.000 0.00 0.00 0.00 4.85
2225 11121 3.158268 GCGTTGTTGCGGTAACTTTATC 58.842 45.455 10.27 0.00 40.05 1.75
2399 11435 2.019249 GCATGTATGATGTGGCAGTGT 58.981 47.619 0.00 0.00 0.00 3.55
2416 11452 5.760253 GGCAGTGTTACATGCATAGACTAAT 59.240 40.000 16.82 0.00 44.37 1.73
2417 11453 6.929049 GGCAGTGTTACATGCATAGACTAATA 59.071 38.462 16.82 0.00 44.37 0.98
2418 11454 7.441157 GGCAGTGTTACATGCATAGACTAATAA 59.559 37.037 16.82 0.00 44.37 1.40
2468 11505 3.806380 TGTGACAAATTTTGCATGGCTT 58.194 36.364 9.04 0.00 0.00 4.35
2469 11506 3.560481 TGTGACAAATTTTGCATGGCTTG 59.440 39.130 9.04 0.00 0.00 4.01
2473 11510 2.188062 AATTTTGCATGGCTTGGTGG 57.812 45.000 2.33 0.00 0.00 4.61
2481 11518 0.622665 ATGGCTTGGTGGGAGAGAAG 59.377 55.000 0.00 0.00 0.00 2.85
2485 11522 2.291217 GGCTTGGTGGGAGAGAAGATTT 60.291 50.000 0.00 0.00 0.00 2.17
2492 11529 6.552008 TGGTGGGAGAGAAGATTTAAAATGT 58.448 36.000 0.00 0.00 0.00 2.71
2494 11531 6.887002 GGTGGGAGAGAAGATTTAAAATGTCT 59.113 38.462 0.00 0.00 0.00 3.41
2536 11631 9.725019 TTTTGCATGACTTAATAGAAGAGAAGA 57.275 29.630 0.00 0.00 0.00 2.87
2537 11632 8.709386 TTGCATGACTTAATAGAAGAGAAGAC 57.291 34.615 0.00 0.00 0.00 3.01
2539 11634 8.535335 TGCATGACTTAATAGAAGAGAAGACTT 58.465 33.333 0.00 0.00 0.00 3.01
2571 11666 6.721318 AGCCTTAATAAAGACATTGAGGTGA 58.279 36.000 8.05 0.00 41.49 4.02
2572 11667 7.349598 AGCCTTAATAAAGACATTGAGGTGAT 58.650 34.615 8.05 0.00 41.49 3.06
2577 11672 9.739276 TTAATAAAGACATTGAGGTGATCACTT 57.261 29.630 24.50 18.30 37.77 3.16
2587 11682 3.087031 AGGTGATCACTTTGCTTCATGG 58.913 45.455 24.50 0.00 0.00 3.66
2590 11685 2.097825 GATCACTTTGCTTCATGGGCT 58.902 47.619 11.57 0.00 0.00 5.19
2599 11694 3.700538 TGCTTCATGGGCTAATGTTCTT 58.299 40.909 11.57 0.00 0.00 2.52
2626 11721 9.806203 AATTCATTATCAATGATTTTTCGAGCA 57.194 25.926 0.00 0.00 46.50 4.26
2629 11724 3.121559 TCAATGATTTTTCGAGCAGCG 57.878 42.857 0.00 0.00 42.69 5.18
2714 11810 3.489180 TCTTCGTTTTTGTTTTCGCCA 57.511 38.095 0.00 0.00 0.00 5.69
2716 11812 4.425520 TCTTCGTTTTTGTTTTCGCCATT 58.574 34.783 0.00 0.00 0.00 3.16
2717 11813 4.266502 TCTTCGTTTTTGTTTTCGCCATTG 59.733 37.500 0.00 0.00 0.00 2.82
2733 11829 3.737774 GCCATTGTTTTTGAGTCTCTTGC 59.262 43.478 0.65 0.00 0.00 4.01
2766 11862 4.836825 TCTTTTGAAGTGCCTCCTATCTG 58.163 43.478 0.00 0.00 0.00 2.90
2779 11875 7.278868 GTGCCTCCTATCTGCATTAATATGTAC 59.721 40.741 0.00 0.00 37.34 2.90
2809 11905 5.654901 TGGTATATGCCCCTATGTTTCAA 57.345 39.130 7.44 0.00 0.00 2.69
2810 11906 5.381757 TGGTATATGCCCCTATGTTTCAAC 58.618 41.667 7.44 0.00 0.00 3.18
2882 11980 6.604735 ATTTGTACGCCTCTATGTTTCATC 57.395 37.500 0.00 0.00 0.00 2.92
2896 11994 9.519191 TCTATGTTTCATCCAGATTTCTTTTGA 57.481 29.630 0.00 0.00 0.00 2.69
2911 12009 8.650143 ATTTCTTTTGAAGTGCCTCCTATTTA 57.350 30.769 0.00 0.00 39.88 1.40
2914 12012 5.897377 TTTGAAGTGCCTCCTATTTAAGC 57.103 39.130 0.00 0.00 0.00 3.09
2929 12027 9.656040 TCCTATTTAAGCGTATGTTTTAGTGAA 57.344 29.630 0.00 0.00 0.00 3.18
2971 12069 5.336945 TCAAATATGGAATTTGGTCACCCA 58.663 37.500 9.81 0.00 38.97 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.938637 GTCTGATGAGATGCGCCTCG 60.939 60.000 4.18 0.00 35.99 4.63
5 6 0.879400 CCAGTCTGATGAGATGCGCC 60.879 60.000 4.18 0.00 0.00 6.53
7 8 2.296752 AGATCCAGTCTGATGAGATGCG 59.703 50.000 0.00 0.00 35.31 4.73
8 9 3.612241 CGAGATCCAGTCTGATGAGATGC 60.612 52.174 0.00 0.00 37.29 3.91
9 10 3.057386 CCGAGATCCAGTCTGATGAGATG 60.057 52.174 0.00 0.00 37.29 2.90
10 11 3.156293 CCGAGATCCAGTCTGATGAGAT 58.844 50.000 0.00 0.00 37.29 2.75
11 12 2.580962 CCGAGATCCAGTCTGATGAGA 58.419 52.381 0.00 0.00 37.29 3.27
12 13 1.000385 GCCGAGATCCAGTCTGATGAG 60.000 57.143 0.00 0.00 37.29 2.90
13 14 1.035923 GCCGAGATCCAGTCTGATGA 58.964 55.000 0.00 0.00 37.29 2.92
14 15 1.039068 AGCCGAGATCCAGTCTGATG 58.961 55.000 0.00 0.00 37.29 3.07
15 16 1.039068 CAGCCGAGATCCAGTCTGAT 58.961 55.000 0.00 0.00 37.29 2.90
16 17 0.034089 TCAGCCGAGATCCAGTCTGA 60.034 55.000 0.00 0.00 37.29 3.27
18 19 0.257328 TCTCAGCCGAGATCCAGTCT 59.743 55.000 0.00 0.00 43.55 3.24
26 27 4.135153 GCGCCTTCTCAGCCGAGA 62.135 66.667 0.00 0.00 46.80 4.04
32 33 4.521062 CCTCCGGCGCCTTCTCAG 62.521 72.222 26.68 12.05 0.00 3.35
58 59 4.487412 GGGCTACCACGACGTCCG 62.487 72.222 10.58 7.90 45.44 4.79
59 60 4.487412 CGGGCTACCACGACGTCC 62.487 72.222 10.58 0.00 36.13 4.79
60 61 2.981560 TTCGGGCTACCACGACGTC 61.982 63.158 5.18 5.18 39.04 4.34
61 62 2.985282 TTCGGGCTACCACGACGT 60.985 61.111 0.00 0.00 39.04 4.34
63 64 0.320160 AAAGTTCGGGCTACCACGAC 60.320 55.000 0.00 0.00 39.04 4.34
64 65 0.037975 GAAAGTTCGGGCTACCACGA 60.038 55.000 0.00 0.00 36.13 4.35
65 66 1.017701 GGAAAGTTCGGGCTACCACG 61.018 60.000 0.00 0.00 36.13 4.94
67 68 1.681076 GGGAAAGTTCGGGCTACCA 59.319 57.895 0.00 0.00 36.13 3.25
68 69 1.449070 CGGGAAAGTTCGGGCTACC 60.449 63.158 0.00 0.00 0.00 3.18
71 72 4.717313 GCCGGGAAAGTTCGGGCT 62.717 66.667 2.18 0.00 45.75 5.19
93 94 3.195002 CACGCCACCATGCTACCG 61.195 66.667 0.00 0.00 0.00 4.02
94 95 2.824041 CCACGCCACCATGCTACC 60.824 66.667 0.00 0.00 0.00 3.18
95 96 3.508840 GCCACGCCACCATGCTAC 61.509 66.667 0.00 0.00 0.00 3.58
113 114 3.191539 CTTTCTCGCCTCGCTGCC 61.192 66.667 0.00 0.00 0.00 4.85
115 116 1.075425 CACTCTTTCTCGCCTCGCTG 61.075 60.000 0.00 0.00 0.00 5.18
116 117 1.214062 CACTCTTTCTCGCCTCGCT 59.786 57.895 0.00 0.00 0.00 4.93
117 118 1.807573 CCACTCTTTCTCGCCTCGC 60.808 63.158 0.00 0.00 0.00 5.03
118 119 0.734253 CACCACTCTTTCTCGCCTCG 60.734 60.000 0.00 0.00 0.00 4.63
120 121 0.832135 TCCACCACTCTTTCTCGCCT 60.832 55.000 0.00 0.00 0.00 5.52
122 123 0.603569 TCTCCACCACTCTTTCTCGC 59.396 55.000 0.00 0.00 0.00 5.03
123 124 2.163412 CTCTCTCCACCACTCTTTCTCG 59.837 54.545 0.00 0.00 0.00 4.04
124 125 2.094234 GCTCTCTCCACCACTCTTTCTC 60.094 54.545 0.00 0.00 0.00 2.87
125 126 1.899142 GCTCTCTCCACCACTCTTTCT 59.101 52.381 0.00 0.00 0.00 2.52
127 128 0.605589 CGCTCTCTCCACCACTCTTT 59.394 55.000 0.00 0.00 0.00 2.52
128 129 1.254284 CCGCTCTCTCCACCACTCTT 61.254 60.000 0.00 0.00 0.00 2.85
129 130 1.680651 CCGCTCTCTCCACCACTCT 60.681 63.158 0.00 0.00 0.00 3.24
131 132 2.500815 TAGCCGCTCTCTCCACCACT 62.501 60.000 0.00 0.00 0.00 4.00
133 134 1.304962 TTAGCCGCTCTCTCCACCA 60.305 57.895 0.00 0.00 0.00 4.17
134 135 1.439644 CTTAGCCGCTCTCTCCACC 59.560 63.158 0.00 0.00 0.00 4.61
135 136 1.439644 CCTTAGCCGCTCTCTCCAC 59.560 63.158 0.00 0.00 0.00 4.02
136 137 1.758514 CCCTTAGCCGCTCTCTCCA 60.759 63.158 0.00 0.00 0.00 3.86
137 138 1.455959 TCCCTTAGCCGCTCTCTCC 60.456 63.158 0.00 0.00 0.00 3.71
138 139 2.037871 CTCCCTTAGCCGCTCTCTC 58.962 63.158 0.00 0.00 0.00 3.20
139 140 2.131067 GCTCCCTTAGCCGCTCTCT 61.131 63.158 0.00 0.00 46.25 3.10
140 141 2.419620 GCTCCCTTAGCCGCTCTC 59.580 66.667 0.00 0.00 46.25 3.20
148 149 1.433879 CCTCGTCACGCTCCCTTAG 59.566 63.158 0.00 0.00 0.00 2.18
149 150 2.707849 GCCTCGTCACGCTCCCTTA 61.708 63.158 0.00 0.00 0.00 2.69
150 151 4.070552 GCCTCGTCACGCTCCCTT 62.071 66.667 0.00 0.00 0.00 3.95
156 157 2.807045 CTCTGTGCCTCGTCACGC 60.807 66.667 0.00 0.00 39.73 5.34
157 158 2.807045 GCTCTGTGCCTCGTCACG 60.807 66.667 0.00 0.00 39.73 4.35
158 159 2.807045 CGCTCTGTGCCTCGTCAC 60.807 66.667 0.00 0.00 38.78 3.67
159 160 4.056125 CCGCTCTGTGCCTCGTCA 62.056 66.667 0.00 0.00 38.78 4.35
161 162 4.363990 CACCGCTCTGTGCCTCGT 62.364 66.667 0.00 0.00 38.78 4.18
164 165 2.738213 CTTTCCACCGCTCTGTGCCT 62.738 60.000 0.00 0.00 38.78 4.75
165 166 2.281484 TTTCCACCGCTCTGTGCC 60.281 61.111 0.00 0.00 38.78 5.01
166 167 2.328099 CCTTTCCACCGCTCTGTGC 61.328 63.158 0.00 0.00 34.85 4.57
167 168 2.328099 GCCTTTCCACCGCTCTGTG 61.328 63.158 0.00 0.00 35.98 3.66
168 169 2.032681 GCCTTTCCACCGCTCTGT 59.967 61.111 0.00 0.00 0.00 3.41
169 170 3.121030 CGCCTTTCCACCGCTCTG 61.121 66.667 0.00 0.00 0.00 3.35
177 178 4.697756 CCTCCACGCGCCTTTCCA 62.698 66.667 5.73 0.00 0.00 3.53
187 188 0.603569 ATAATCTAGCGGCCTCCACG 59.396 55.000 0.00 0.00 0.00 4.94
188 189 3.955650 TTATAATCTAGCGGCCTCCAC 57.044 47.619 0.00 0.00 0.00 4.02
189 190 3.306780 GCTTTATAATCTAGCGGCCTCCA 60.307 47.826 0.00 0.00 0.00 3.86
190 191 3.263261 GCTTTATAATCTAGCGGCCTCC 58.737 50.000 0.00 0.00 0.00 4.30
191 192 3.680458 GTGCTTTATAATCTAGCGGCCTC 59.320 47.826 0.00 0.00 37.73 4.70
192 193 3.665190 GTGCTTTATAATCTAGCGGCCT 58.335 45.455 0.00 0.00 37.73 5.19
193 194 2.412089 CGTGCTTTATAATCTAGCGGCC 59.588 50.000 0.00 0.00 37.73 6.13
194 195 2.159827 GCGTGCTTTATAATCTAGCGGC 60.160 50.000 0.00 0.00 37.73 6.53
196 197 2.090658 CGGCGTGCTTTATAATCTAGCG 59.909 50.000 0.00 0.00 37.73 4.26
197 198 2.412089 CCGGCGTGCTTTATAATCTAGC 59.588 50.000 6.01 1.38 35.50 3.42
199 200 3.645884 GTCCGGCGTGCTTTATAATCTA 58.354 45.455 6.01 0.00 0.00 1.98
200 201 2.480845 GTCCGGCGTGCTTTATAATCT 58.519 47.619 6.01 0.00 0.00 2.40
201 202 1.191647 CGTCCGGCGTGCTTTATAATC 59.808 52.381 6.01 0.00 35.54 1.75
203 204 1.422950 GCGTCCGGCGTGCTTTATAA 61.423 55.000 17.38 0.00 43.66 0.98
204 205 1.879430 GCGTCCGGCGTGCTTTATA 60.879 57.895 17.38 0.00 43.66 0.98
205 206 3.192922 GCGTCCGGCGTGCTTTAT 61.193 61.111 17.38 0.00 43.66 1.40
244 245 3.240353 GAAAAAGATGGCGCGCGC 61.240 61.111 44.40 44.40 41.06 6.86
245 246 2.576847 GGAAAAAGATGGCGCGCG 60.577 61.111 28.44 28.44 0.00 6.86
246 247 2.576847 CGGAAAAAGATGGCGCGC 60.577 61.111 25.94 25.94 0.00 6.86
247 248 2.576847 GCGGAAAAAGATGGCGCG 60.577 61.111 0.00 0.00 0.00 6.86
248 249 2.576847 CGCGGAAAAAGATGGCGC 60.577 61.111 0.00 0.00 40.39 6.53
250 251 1.801512 GCACGCGGAAAAAGATGGC 60.802 57.895 12.47 0.00 0.00 4.40
251 252 1.154035 GGCACGCGGAAAAAGATGG 60.154 57.895 12.47 0.00 0.00 3.51
253 254 1.066430 TCTAGGCACGCGGAAAAAGAT 60.066 47.619 12.47 0.00 0.00 2.40
254 255 0.319083 TCTAGGCACGCGGAAAAAGA 59.681 50.000 12.47 4.74 0.00 2.52
255 256 1.327764 GATCTAGGCACGCGGAAAAAG 59.672 52.381 12.47 2.02 0.00 2.27
258 259 0.102481 GAGATCTAGGCACGCGGAAA 59.898 55.000 12.47 0.00 0.00 3.13
259 260 0.752009 AGAGATCTAGGCACGCGGAA 60.752 55.000 12.47 0.00 0.00 4.30
261 262 1.284408 GAGAGATCTAGGCACGCGG 59.716 63.158 12.47 0.00 0.00 6.46
262 263 1.082431 CGAGAGATCTAGGCACGCG 60.082 63.158 3.53 3.53 0.00 6.01
263 264 1.371145 GCGAGAGATCTAGGCACGC 60.371 63.158 8.50 8.50 38.03 5.34
264 265 1.082431 CGCGAGAGATCTAGGCACG 60.082 63.158 0.00 0.00 0.00 5.34
265 266 1.371145 GCGCGAGAGATCTAGGCAC 60.371 63.158 12.10 0.00 0.00 5.01
267 268 2.257067 GGCGCGAGAGATCTAGGC 59.743 66.667 12.10 0.00 0.00 3.93
284 285 4.697756 TTTCGGGCACTCCAGCGG 62.698 66.667 0.00 0.00 34.36 5.52
287 288 0.535102 AGTGTTTTCGGGCACTCCAG 60.535 55.000 0.00 0.00 41.58 3.86
288 289 1.529796 AGTGTTTTCGGGCACTCCA 59.470 52.632 0.00 0.00 41.58 3.86
289 290 4.475527 AGTGTTTTCGGGCACTCC 57.524 55.556 0.00 0.00 41.58 3.85
293 294 2.975799 GCGGAGTGTTTTCGGGCA 60.976 61.111 0.00 0.00 0.00 5.36
294 295 4.084888 CGCGGAGTGTTTTCGGGC 62.085 66.667 0.00 0.00 0.00 6.13
295 296 4.084888 GCGCGGAGTGTTTTCGGG 62.085 66.667 8.83 0.00 41.96 5.14
296 297 4.424430 CGCGCGGAGTGTTTTCGG 62.424 66.667 24.84 0.00 41.96 4.30
298 299 1.893168 TTAGCGCGCGGAGTGTTTTC 61.893 55.000 33.06 11.27 41.96 2.29
299 300 1.500512 TTTAGCGCGCGGAGTGTTTT 61.501 50.000 33.06 7.25 41.96 2.43
301 302 1.957186 TTTTAGCGCGCGGAGTGTT 60.957 52.632 33.06 8.96 41.96 3.32
302 303 2.356553 TTTTAGCGCGCGGAGTGT 60.357 55.556 33.06 9.81 41.96 3.55
303 304 2.095843 GTTTTAGCGCGCGGAGTG 59.904 61.111 33.06 2.79 43.41 3.51
304 305 3.116531 GGTTTTAGCGCGCGGAGT 61.117 61.111 33.06 11.12 0.00 3.85
306 307 4.683721 TGGGTTTTAGCGCGCGGA 62.684 61.111 33.06 15.73 0.00 5.54
307 308 4.454717 GTGGGTTTTAGCGCGCGG 62.455 66.667 33.06 13.66 0.00 6.46
308 309 4.787299 CGTGGGTTTTAGCGCGCG 62.787 66.667 28.44 28.44 45.62 6.86
309 310 2.720561 AAACGTGGGTTTTAGCGCGC 62.721 55.000 26.66 26.66 43.69 6.86
310 311 0.512085 TAAACGTGGGTTTTAGCGCG 59.488 50.000 0.00 0.00 43.69 6.86
311 312 1.400113 GGTAAACGTGGGTTTTAGCGC 60.400 52.381 0.00 0.00 43.69 5.92
312 313 2.145536 AGGTAAACGTGGGTTTTAGCG 58.854 47.619 0.00 0.00 43.69 4.26
313 314 2.158254 CGAGGTAAACGTGGGTTTTAGC 59.842 50.000 0.00 0.00 43.69 3.09
315 316 3.467374 ACGAGGTAAACGTGGGTTTTA 57.533 42.857 0.00 0.00 43.69 1.52
316 317 2.330440 ACGAGGTAAACGTGGGTTTT 57.670 45.000 0.00 0.00 43.69 2.43
324 325 2.149606 AAACGCGCACGAGGTAAACG 62.150 55.000 5.73 0.00 43.93 3.60
325 326 0.041926 AAAACGCGCACGAGGTAAAC 60.042 50.000 5.73 0.00 43.93 2.01
326 327 0.656785 AAAAACGCGCACGAGGTAAA 59.343 45.000 5.73 0.00 43.93 2.01
328 329 4.030821 AAAAACGCGCACGAGGTA 57.969 50.000 5.73 0.00 43.93 3.08
362 363 4.641989 TCTGCCCATTTTTCTAAGAGCATC 59.358 41.667 0.00 0.00 0.00 3.91
364 365 4.012374 CTCTGCCCATTTTTCTAAGAGCA 58.988 43.478 0.00 0.00 0.00 4.26
365 366 4.013050 ACTCTGCCCATTTTTCTAAGAGC 58.987 43.478 0.00 0.00 34.39 4.09
366 367 6.825721 ACATACTCTGCCCATTTTTCTAAGAG 59.174 38.462 0.00 0.00 36.58 2.85
367 368 6.599244 CACATACTCTGCCCATTTTTCTAAGA 59.401 38.462 0.00 0.00 0.00 2.10
368 369 6.183360 CCACATACTCTGCCCATTTTTCTAAG 60.183 42.308 0.00 0.00 0.00 2.18
369 370 5.652014 CCACATACTCTGCCCATTTTTCTAA 59.348 40.000 0.00 0.00 0.00 2.10
370 371 5.192927 CCACATACTCTGCCCATTTTTCTA 58.807 41.667 0.00 0.00 0.00 2.10
371 372 4.019174 CCACATACTCTGCCCATTTTTCT 58.981 43.478 0.00 0.00 0.00 2.52
372 373 3.429410 GCCACATACTCTGCCCATTTTTC 60.429 47.826 0.00 0.00 0.00 2.29
375 376 1.686115 GGCCACATACTCTGCCCATTT 60.686 52.381 0.00 0.00 37.94 2.32
376 377 0.106519 GGCCACATACTCTGCCCATT 60.107 55.000 0.00 0.00 37.94 3.16
377 378 1.533711 GGCCACATACTCTGCCCAT 59.466 57.895 0.00 0.00 37.94 4.00
381 382 1.884926 GAGCGGCCACATACTCTGC 60.885 63.158 2.24 0.00 0.00 4.26
382 383 0.176680 AAGAGCGGCCACATACTCTG 59.823 55.000 2.24 0.00 39.40 3.35
383 384 0.461961 GAAGAGCGGCCACATACTCT 59.538 55.000 2.24 3.37 41.18 3.24
384 385 0.175760 TGAAGAGCGGCCACATACTC 59.824 55.000 2.24 0.75 0.00 2.59
386 387 0.727398 GTTGAAGAGCGGCCACATAC 59.273 55.000 2.24 0.00 0.00 2.39
387 388 0.739462 CGTTGAAGAGCGGCCACATA 60.739 55.000 2.24 0.00 0.00 2.29
388 389 2.034879 CGTTGAAGAGCGGCCACAT 61.035 57.895 2.24 0.00 0.00 3.21
390 391 2.665185 ACGTTGAAGAGCGGCCAC 60.665 61.111 2.24 0.00 0.00 5.01
391 392 2.357034 GACGTTGAAGAGCGGCCA 60.357 61.111 2.24 0.00 0.00 5.36
392 393 1.696832 GATGACGTTGAAGAGCGGCC 61.697 60.000 0.00 0.00 34.82 6.13
393 394 1.014044 TGATGACGTTGAAGAGCGGC 61.014 55.000 0.00 0.00 36.53 6.53
395 396 1.253800 CGATGATGACGTTGAAGAGCG 59.746 52.381 0.00 0.00 0.00 5.03
396 397 2.263077 ACGATGATGACGTTGAAGAGC 58.737 47.619 0.00 0.00 41.18 4.09
397 398 7.859613 ATATTACGATGATGACGTTGAAGAG 57.140 36.000 0.00 0.00 43.62 2.85
399 400 9.943465 CATTATATTACGATGATGACGTTGAAG 57.057 33.333 0.00 0.00 43.62 3.02
400 401 8.921670 CCATTATATTACGATGATGACGTTGAA 58.078 33.333 0.00 0.00 43.62 2.69
401 402 7.544217 CCCATTATATTACGATGATGACGTTGA 59.456 37.037 0.00 0.00 43.62 3.18
402 403 7.544217 TCCCATTATATTACGATGATGACGTTG 59.456 37.037 0.00 0.00 43.62 4.10
403 404 7.608153 TCCCATTATATTACGATGATGACGTT 58.392 34.615 0.00 0.00 43.62 3.99
404 405 7.093902 ACTCCCATTATATTACGATGATGACGT 60.094 37.037 0.00 0.00 45.75 4.34
405 406 7.258441 ACTCCCATTATATTACGATGATGACG 58.742 38.462 0.00 0.00 0.00 4.35
406 407 9.737427 CTACTCCCATTATATTACGATGATGAC 57.263 37.037 0.00 0.00 0.00 3.06
407 408 9.475620 ACTACTCCCATTATATTACGATGATGA 57.524 33.333 0.00 0.00 0.00 2.92
410 411 8.746530 GGAACTACTCCCATTATATTACGATGA 58.253 37.037 0.00 0.00 38.44 2.92
411 412 8.928270 GGAACTACTCCCATTATATTACGATG 57.072 38.462 0.00 0.00 38.44 3.84
437 438 3.804325 CGATGCCTAGATTACCACAAGTG 59.196 47.826 0.00 0.00 0.00 3.16
438 439 3.741388 GCGATGCCTAGATTACCACAAGT 60.741 47.826 0.00 0.00 0.00 3.16
441 442 1.760029 TGCGATGCCTAGATTACCACA 59.240 47.619 0.00 0.00 0.00 4.17
442 443 2.526304 TGCGATGCCTAGATTACCAC 57.474 50.000 0.00 0.00 0.00 4.16
443 444 2.368548 ACATGCGATGCCTAGATTACCA 59.631 45.455 0.00 0.00 0.00 3.25
444 445 2.738846 CACATGCGATGCCTAGATTACC 59.261 50.000 0.00 0.00 0.00 2.85
445 446 3.185188 CACACATGCGATGCCTAGATTAC 59.815 47.826 0.00 0.00 0.00 1.89
446 447 3.392882 CACACATGCGATGCCTAGATTA 58.607 45.455 0.00 0.00 0.00 1.75
448 449 1.875009 CACACATGCGATGCCTAGAT 58.125 50.000 0.00 0.00 0.00 1.98
450 451 1.645455 GCACACATGCGATGCCTAG 59.355 57.895 5.35 0.00 43.33 3.02
484 485 6.032956 TCGAGTTTTGATAGAGCTGGTAAA 57.967 37.500 0.00 0.00 0.00 2.01
486 487 4.948004 TCTCGAGTTTTGATAGAGCTGGTA 59.052 41.667 13.13 0.00 0.00 3.25
487 488 3.764434 TCTCGAGTTTTGATAGAGCTGGT 59.236 43.478 13.13 0.00 0.00 4.00
489 490 7.421599 TCTAATCTCGAGTTTTGATAGAGCTG 58.578 38.462 13.13 0.00 0.00 4.24
490 491 7.575414 TCTAATCTCGAGTTTTGATAGAGCT 57.425 36.000 13.13 0.00 0.00 4.09
494 495 8.820933 TGCATTTCTAATCTCGAGTTTTGATAG 58.179 33.333 17.21 8.63 0.00 2.08
495 496 8.716646 TGCATTTCTAATCTCGAGTTTTGATA 57.283 30.769 17.21 14.01 0.00 2.15
496 497 7.615582 TGCATTTCTAATCTCGAGTTTTGAT 57.384 32.000 17.21 5.09 0.00 2.57
497 498 7.433708 TTGCATTTCTAATCTCGAGTTTTGA 57.566 32.000 13.13 13.61 0.00 2.69
500 501 7.550551 TCTCATTGCATTTCTAATCTCGAGTTT 59.449 33.333 13.13 13.08 0.00 2.66
501 502 7.010923 GTCTCATTGCATTTCTAATCTCGAGTT 59.989 37.037 13.13 8.74 0.00 3.01
502 503 6.478344 GTCTCATTGCATTTCTAATCTCGAGT 59.522 38.462 13.13 0.00 0.00 4.18
503 504 6.700960 AGTCTCATTGCATTTCTAATCTCGAG 59.299 38.462 5.93 5.93 0.00 4.04
504 505 6.478016 CAGTCTCATTGCATTTCTAATCTCGA 59.522 38.462 0.00 0.00 0.00 4.04
505 506 6.292757 CCAGTCTCATTGCATTTCTAATCTCG 60.293 42.308 0.00 0.00 0.00 4.04
506 507 6.017275 CCCAGTCTCATTGCATTTCTAATCTC 60.017 42.308 0.00 0.00 0.00 2.75
507 508 5.826737 CCCAGTCTCATTGCATTTCTAATCT 59.173 40.000 0.00 0.00 0.00 2.40
508 509 5.824624 TCCCAGTCTCATTGCATTTCTAATC 59.175 40.000 0.00 0.00 0.00 1.75
509 510 5.591877 GTCCCAGTCTCATTGCATTTCTAAT 59.408 40.000 0.00 0.00 0.00 1.73
510 511 4.943705 GTCCCAGTCTCATTGCATTTCTAA 59.056 41.667 0.00 0.00 0.00 2.10
511 512 4.019411 TGTCCCAGTCTCATTGCATTTCTA 60.019 41.667 0.00 0.00 0.00 2.10
512 513 3.245016 TGTCCCAGTCTCATTGCATTTCT 60.245 43.478 0.00 0.00 0.00 2.52
514 515 2.821969 GTGTCCCAGTCTCATTGCATTT 59.178 45.455 0.00 0.00 0.00 2.32
515 516 2.440409 GTGTCCCAGTCTCATTGCATT 58.560 47.619 0.00 0.00 0.00 3.56
517 518 0.320683 CGTGTCCCAGTCTCATTGCA 60.321 55.000 0.00 0.00 0.00 4.08
518 519 0.320771 ACGTGTCCCAGTCTCATTGC 60.321 55.000 0.00 0.00 0.00 3.56
519 520 1.714794 GACGTGTCCCAGTCTCATTG 58.285 55.000 0.00 0.00 34.74 2.82
521 522 0.608308 TCGACGTGTCCCAGTCTCAT 60.608 55.000 0.00 0.00 35.38 2.90
522 523 0.608308 ATCGACGTGTCCCAGTCTCA 60.608 55.000 0.00 0.00 35.38 3.27
523 524 0.099082 GATCGACGTGTCCCAGTCTC 59.901 60.000 0.00 0.00 35.38 3.36
525 526 0.242825 TTGATCGACGTGTCCCAGTC 59.757 55.000 0.00 0.00 0.00 3.51
527 528 1.078759 GCTTGATCGACGTGTCCCAG 61.079 60.000 0.00 0.00 0.00 4.45
528 529 1.080093 GCTTGATCGACGTGTCCCA 60.080 57.895 0.00 0.00 0.00 4.37
529 530 1.078759 CTGCTTGATCGACGTGTCCC 61.079 60.000 0.00 0.00 0.00 4.46
530 531 0.109272 TCTGCTTGATCGACGTGTCC 60.109 55.000 0.00 0.00 0.00 4.02
531 532 1.585668 CATCTGCTTGATCGACGTGTC 59.414 52.381 0.00 0.00 32.05 3.67
532 533 1.202348 TCATCTGCTTGATCGACGTGT 59.798 47.619 0.00 0.00 32.05 4.49
534 535 1.474478 AGTCATCTGCTTGATCGACGT 59.526 47.619 0.00 0.00 37.80 4.34
535 536 2.115595 GAGTCATCTGCTTGATCGACG 58.884 52.381 0.00 0.00 37.80 5.12
536 537 2.100584 AGGAGTCATCTGCTTGATCGAC 59.899 50.000 0.00 11.07 39.28 4.20
538 539 2.886862 AGGAGTCATCTGCTTGATCG 57.113 50.000 0.00 0.00 39.28 3.69
541 542 3.435275 AGTGTAGGAGTCATCTGCTTGA 58.565 45.455 0.00 0.00 42.25 3.02
542 543 3.883830 AGTGTAGGAGTCATCTGCTTG 57.116 47.619 0.00 0.00 42.25 4.01
800 801 1.589803 AGCGCGAGTAAACAACCTTT 58.410 45.000 12.10 0.00 0.00 3.11
804 805 2.034076 CAACAAGCGCGAGTAAACAAC 58.966 47.619 12.10 0.00 0.00 3.32
805 806 1.934525 TCAACAAGCGCGAGTAAACAA 59.065 42.857 12.10 0.00 0.00 2.83
806 807 1.573026 TCAACAAGCGCGAGTAAACA 58.427 45.000 12.10 0.00 0.00 2.83
807 808 2.412089 AGATCAACAAGCGCGAGTAAAC 59.588 45.455 12.10 0.00 0.00 2.01
809 810 2.259618 GAGATCAACAAGCGCGAGTAA 58.740 47.619 12.10 0.00 0.00 2.24
816 817 2.932614 CCAAGTAGGAGATCAACAAGCG 59.067 50.000 0.00 0.00 41.22 4.68
817 818 2.680339 GCCAAGTAGGAGATCAACAAGC 59.320 50.000 0.00 0.00 41.22 4.01
819 820 4.640771 AAGCCAAGTAGGAGATCAACAA 57.359 40.909 0.00 0.00 41.22 2.83
824 825 2.924421 CCCAAAGCCAAGTAGGAGATC 58.076 52.381 0.00 0.00 41.22 2.75
832 833 2.043604 GCCAAAGCCCAAAGCCAAGT 62.044 55.000 0.00 0.00 45.47 3.16
833 834 1.301953 GCCAAAGCCCAAAGCCAAG 60.302 57.895 0.00 0.00 45.47 3.61
834 835 2.828145 GCCAAAGCCCAAAGCCAA 59.172 55.556 0.00 0.00 45.47 4.52
835 836 3.614698 CGCCAAAGCCCAAAGCCA 61.615 61.111 0.00 0.00 45.47 4.75
836 837 2.563050 GATCGCCAAAGCCCAAAGCC 62.563 60.000 0.00 0.00 45.47 4.35
838 839 1.512694 GGATCGCCAAAGCCCAAAG 59.487 57.895 0.00 0.00 34.57 2.77
839 840 2.339556 CGGATCGCCAAAGCCCAAA 61.340 57.895 0.00 0.00 34.57 3.28
840 841 2.749839 CGGATCGCCAAAGCCCAA 60.750 61.111 0.00 0.00 34.57 4.12
852 853 2.202932 ATCCAGCACGTGCGGATC 60.203 61.111 38.02 18.08 44.73 3.36
857 858 1.083806 TGATTCGATCCAGCACGTGC 61.084 55.000 32.79 32.79 42.49 5.34
859 860 3.352447 CTGATTCGATCCAGCACGT 57.648 52.632 2.28 0.00 0.00 4.49
864 865 2.402305 GCTACTGCTGATTCGATCCAG 58.598 52.381 9.45 9.45 36.03 3.86
865 866 1.069204 GGCTACTGCTGATTCGATCCA 59.931 52.381 0.00 0.00 39.59 3.41
866 867 1.606737 GGGCTACTGCTGATTCGATCC 60.607 57.143 0.00 0.00 39.59 3.36
867 868 1.789506 GGGCTACTGCTGATTCGATC 58.210 55.000 0.00 0.00 39.59 3.69
869 870 1.320344 ACGGGCTACTGCTGATTCGA 61.320 55.000 0.00 0.00 39.59 3.71
870 871 1.141881 ACGGGCTACTGCTGATTCG 59.858 57.895 0.00 0.00 39.59 3.34
871 872 0.175760 TCACGGGCTACTGCTGATTC 59.824 55.000 0.00 0.00 39.59 2.52
872 873 0.833287 ATCACGGGCTACTGCTGATT 59.167 50.000 0.00 0.00 39.59 2.57
873 874 1.341531 GTATCACGGGCTACTGCTGAT 59.658 52.381 0.00 0.00 39.59 2.90
874 875 0.744874 GTATCACGGGCTACTGCTGA 59.255 55.000 0.00 0.00 39.59 4.26
875 876 0.595053 CGTATCACGGGCTACTGCTG 60.595 60.000 0.00 0.00 38.08 4.41
876 877 1.734137 CGTATCACGGGCTACTGCT 59.266 57.895 0.00 0.00 38.08 4.24
877 878 4.320971 CGTATCACGGGCTACTGC 57.679 61.111 0.00 0.00 38.08 4.40
887 888 1.729838 GCTCGATCGCCCGTATCAC 60.730 63.158 11.09 0.00 0.00 3.06
888 889 1.452953 AAGCTCGATCGCCCGTATCA 61.453 55.000 11.09 0.00 0.00 2.15
889 890 0.729816 GAAGCTCGATCGCCCGTATC 60.730 60.000 11.09 0.09 0.00 2.24
890 891 1.286260 GAAGCTCGATCGCCCGTAT 59.714 57.895 11.09 0.00 0.00 3.06
891 892 2.719979 GAAGCTCGATCGCCCGTA 59.280 61.111 11.09 0.00 0.00 4.02
892 893 4.554363 CGAAGCTCGATCGCCCGT 62.554 66.667 11.09 1.37 43.74 5.28
1037 2568 1.875813 GCTGCGATCGACTGACTGG 60.876 63.158 21.57 0.00 0.00 4.00
1038 2569 1.875813 GGCTGCGATCGACTGACTG 60.876 63.158 21.57 5.76 0.00 3.51
1039 2570 1.877576 TTGGCTGCGATCGACTGACT 61.878 55.000 21.57 0.00 0.00 3.41
1040 2571 1.416813 CTTGGCTGCGATCGACTGAC 61.417 60.000 21.57 16.15 0.00 3.51
1041 2572 1.153765 CTTGGCTGCGATCGACTGA 60.154 57.895 21.57 0.00 0.00 3.41
1042 2573 1.416813 GACTTGGCTGCGATCGACTG 61.417 60.000 21.57 14.64 0.00 3.51
1043 2574 1.153745 GACTTGGCTGCGATCGACT 60.154 57.895 21.57 0.00 0.00 4.18
1052 2583 0.445436 GTGATTGCTCGACTTGGCTG 59.555 55.000 0.00 0.00 0.00 4.85
1069 2600 3.904136 AAACAAGAGATCGCTTTGGTG 57.096 42.857 9.19 1.66 0.00 4.17
1070 2601 4.918810 AAAAACAAGAGATCGCTTTGGT 57.081 36.364 9.19 2.74 0.00 3.67
1077 2608 3.700130 ACGCGTAAAAACAAGAGATCG 57.300 42.857 11.67 0.00 0.00 3.69
1094 2646 0.793853 GACTTCCTCTCGACGAACGC 60.794 60.000 0.00 0.00 42.26 4.84
1096 2648 1.805345 TCTGACTTCCTCTCGACGAAC 59.195 52.381 0.00 0.00 0.00 3.95
1108 2660 4.703093 ACTAGGACTGCTACTTCTGACTTC 59.297 45.833 0.00 0.00 0.00 3.01
1122 2674 4.177026 CTGGATCAAACGAACTAGGACTG 58.823 47.826 0.00 0.00 0.00 3.51
1126 2678 4.566004 TGAACTGGATCAAACGAACTAGG 58.434 43.478 0.00 0.00 0.00 3.02
1133 2685 5.924475 ACTTAACTGAACTGGATCAAACG 57.076 39.130 0.00 0.00 0.00 3.60
1152 2704 2.097142 GCCATCTCTCACGTACGTACTT 59.903 50.000 22.34 11.60 0.00 2.24
1155 2707 0.654160 CGCCATCTCTCACGTACGTA 59.346 55.000 22.34 5.28 0.00 3.57
1156 2708 1.303799 ACGCCATCTCTCACGTACGT 61.304 55.000 16.72 16.72 36.91 3.57
1222 2778 2.703798 GCACGCTCGTACCTGGGTA 61.704 63.158 0.00 0.00 0.00 3.69
1234 2790 4.831307 GGATCGTCGACGCACGCT 62.831 66.667 32.19 13.93 39.74 5.07
1239 2804 2.278013 GAGGTGGATCGTCGACGC 60.278 66.667 32.19 19.22 39.60 5.19
1269 2851 5.472478 AGCATATTATCAGACACAATGCAGG 59.528 40.000 7.10 0.00 40.45 4.85
1271 2853 5.824097 ACAGCATATTATCAGACACAATGCA 59.176 36.000 7.10 0.00 40.45 3.96
1273 2855 7.486802 TCACAGCATATTATCAGACACAATG 57.513 36.000 0.00 0.00 0.00 2.82
1274 2856 8.565416 CAATCACAGCATATTATCAGACACAAT 58.435 33.333 0.00 0.00 0.00 2.71
1275 2857 7.553760 ACAATCACAGCATATTATCAGACACAA 59.446 33.333 0.00 0.00 0.00 3.33
1277 2859 7.307632 GGACAATCACAGCATATTATCAGACAC 60.308 40.741 0.00 0.00 0.00 3.67
1278 2860 6.707608 GGACAATCACAGCATATTATCAGACA 59.292 38.462 0.00 0.00 0.00 3.41
1279 2861 6.128715 CGGACAATCACAGCATATTATCAGAC 60.129 42.308 0.00 0.00 0.00 3.51
1280 2862 5.928264 CGGACAATCACAGCATATTATCAGA 59.072 40.000 0.00 0.00 0.00 3.27
1281 2863 5.698089 ACGGACAATCACAGCATATTATCAG 59.302 40.000 0.00 0.00 0.00 2.90
1282 2864 5.466393 CACGGACAATCACAGCATATTATCA 59.534 40.000 0.00 0.00 0.00 2.15
1283 2865 5.106948 CCACGGACAATCACAGCATATTATC 60.107 44.000 0.00 0.00 0.00 1.75
1284 2866 4.756642 CCACGGACAATCACAGCATATTAT 59.243 41.667 0.00 0.00 0.00 1.28
1285 2867 4.126437 CCACGGACAATCACAGCATATTA 58.874 43.478 0.00 0.00 0.00 0.98
1286 2868 2.945008 CCACGGACAATCACAGCATATT 59.055 45.455 0.00 0.00 0.00 1.28
1289 2871 0.036732 ACCACGGACAATCACAGCAT 59.963 50.000 0.00 0.00 0.00 3.79
1292 2874 2.099141 ATCACCACGGACAATCACAG 57.901 50.000 0.00 0.00 0.00 3.66
1299 2881 0.888736 CCTGCAAATCACCACGGACA 60.889 55.000 0.00 0.00 0.00 4.02
1310 2892 0.035056 CCCCGTCTTCTCCTGCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
1381 5112 4.760047 GTGCTCCGCCATGTCCGT 62.760 66.667 0.00 0.00 0.00 4.69
1559 5356 1.139947 GTCTTCTCGCCGAGGAAGG 59.860 63.158 15.08 0.00 39.30 3.46
1583 5380 2.348998 CCGCCTTCTGCTTGGTCT 59.651 61.111 0.00 0.00 38.05 3.85
1709 5539 2.333938 CGTTCACCACCGTCTCGT 59.666 61.111 0.00 0.00 0.00 4.18
1729 10604 4.740822 GTCCTTGGCGCCCACCAT 62.741 66.667 26.77 0.00 40.13 3.55
1796 10674 1.688735 TCTTCTCTGTGGTGTCTGTGG 59.311 52.381 0.00 0.00 0.00 4.17
1798 10676 2.230025 CGATCTTCTCTGTGGTGTCTGT 59.770 50.000 0.00 0.00 0.00 3.41
1800 10678 2.490115 GACGATCTTCTCTGTGGTGTCT 59.510 50.000 0.00 0.00 0.00 3.41
1802 10689 2.230025 CTGACGATCTTCTCTGTGGTGT 59.770 50.000 0.48 0.00 0.00 4.16
1838 10733 2.667473 AAGCAAATTGAGCTCATGCC 57.333 45.000 28.59 15.83 42.53 4.40
1875 10770 7.398829 ACCACCAAATATGTGTGTATTGACTA 58.601 34.615 0.00 0.00 31.71 2.59
1876 10771 6.245408 ACCACCAAATATGTGTGTATTGACT 58.755 36.000 0.00 0.00 31.71 3.41
1877 10772 6.509418 ACCACCAAATATGTGTGTATTGAC 57.491 37.500 0.00 0.00 31.71 3.18
1878 10773 6.151985 GGAACCACCAAATATGTGTGTATTGA 59.848 38.462 0.00 0.00 38.79 2.57
1879 10774 6.071672 TGGAACCACCAAATATGTGTGTATTG 60.072 38.462 0.00 0.00 46.75 1.90
1880 10775 6.013379 TGGAACCACCAAATATGTGTGTATT 58.987 36.000 0.00 0.00 46.75 1.89
1881 10776 5.575157 TGGAACCACCAAATATGTGTGTAT 58.425 37.500 0.00 0.00 46.75 2.29
1882 10777 4.986783 TGGAACCACCAAATATGTGTGTA 58.013 39.130 0.00 0.00 46.75 2.90
1898 10793 5.673818 GCGTAGAAATCATGAAACTGGAACC 60.674 44.000 0.00 0.00 0.00 3.62
1918 10813 1.565591 CGACCAAAAAGTGCGCGTA 59.434 52.632 8.43 0.00 0.00 4.42
2013 10908 5.924825 CCCTACCACGTGTATAAGCTTAATC 59.075 44.000 15.65 7.24 0.00 1.75
2033 10928 7.398047 ACATGACACAAACTATAGTACACCCTA 59.602 37.037 5.65 0.00 0.00 3.53
2076 10972 3.919216 TGTATTTTCATTTTGGCGGGTG 58.081 40.909 0.00 0.00 0.00 4.61
2077 10973 4.382577 GGATGTATTTTCATTTTGGCGGGT 60.383 41.667 0.00 0.00 0.00 5.28
2078 10974 4.119136 GGATGTATTTTCATTTTGGCGGG 58.881 43.478 0.00 0.00 0.00 6.13
2079 10975 4.119136 GGGATGTATTTTCATTTTGGCGG 58.881 43.478 0.00 0.00 0.00 6.13
2080 10976 4.119136 GGGGATGTATTTTCATTTTGGCG 58.881 43.478 0.00 0.00 0.00 5.69
2081 10977 5.104982 TGAGGGGATGTATTTTCATTTTGGC 60.105 40.000 0.00 0.00 0.00 4.52
2082 10978 6.543430 TGAGGGGATGTATTTTCATTTTGG 57.457 37.500 0.00 0.00 0.00 3.28
2083 10979 9.452287 AAAATGAGGGGATGTATTTTCATTTTG 57.548 29.630 17.27 0.00 45.75 2.44
2085 10981 8.605065 ACAAAATGAGGGGATGTATTTTCATTT 58.395 29.630 4.85 4.85 43.30 2.32
2086 10982 8.149631 ACAAAATGAGGGGATGTATTTTCATT 57.850 30.769 0.00 0.00 36.98 2.57
2087 10983 7.738437 ACAAAATGAGGGGATGTATTTTCAT 57.262 32.000 0.00 0.00 32.21 2.57
2088 10984 7.310361 GGAACAAAATGAGGGGATGTATTTTCA 60.310 37.037 0.00 0.00 32.21 2.69
2089 10985 7.041721 GGAACAAAATGAGGGGATGTATTTTC 58.958 38.462 0.00 0.00 32.21 2.29
2090 10986 6.350949 CGGAACAAAATGAGGGGATGTATTTT 60.351 38.462 0.00 0.00 34.17 1.82
2091 10987 5.127031 CGGAACAAAATGAGGGGATGTATTT 59.873 40.000 0.00 0.00 0.00 1.40
2092 10988 4.644685 CGGAACAAAATGAGGGGATGTATT 59.355 41.667 0.00 0.00 0.00 1.89
2093 10989 4.080015 TCGGAACAAAATGAGGGGATGTAT 60.080 41.667 0.00 0.00 0.00 2.29
2094 10990 3.264706 TCGGAACAAAATGAGGGGATGTA 59.735 43.478 0.00 0.00 0.00 2.29
2095 10991 2.041081 TCGGAACAAAATGAGGGGATGT 59.959 45.455 0.00 0.00 0.00 3.06
2096 10992 2.722094 TCGGAACAAAATGAGGGGATG 58.278 47.619 0.00 0.00 0.00 3.51
2097 10993 3.053693 TCATCGGAACAAAATGAGGGGAT 60.054 43.478 0.00 0.00 0.00 3.85
2098 10994 2.307392 TCATCGGAACAAAATGAGGGGA 59.693 45.455 0.00 0.00 0.00 4.81
2099 10995 2.722094 TCATCGGAACAAAATGAGGGG 58.278 47.619 0.00 0.00 0.00 4.79
2114 11010 0.171231 TCTGCTCACTCGGTTCATCG 59.829 55.000 0.00 0.00 0.00 3.84
2145 11041 1.957177 GACGCTAGTGGATCATCCTCA 59.043 52.381 4.96 0.00 37.46 3.86
2146 11042 2.235016 AGACGCTAGTGGATCATCCTC 58.765 52.381 4.96 0.58 37.46 3.71
2167 11063 3.380004 AGTTTTGAAGATTTGTGGCGTGA 59.620 39.130 0.00 0.00 0.00 4.35
2170 11066 5.356882 TCTAGTTTTGAAGATTTGTGGCG 57.643 39.130 0.00 0.00 0.00 5.69
2181 11077 5.116180 CGCAGGGTATCATCTAGTTTTGAA 58.884 41.667 0.00 0.00 0.00 2.69
2184 11080 3.467803 GCGCAGGGTATCATCTAGTTTT 58.532 45.455 0.30 0.00 0.00 2.43
2185 11081 2.545952 CGCGCAGGGTATCATCTAGTTT 60.546 50.000 8.75 0.00 34.98 2.66
2351 11386 9.958180 TGTTGTCATCCTTCTTATCTTTATTCA 57.042 29.630 0.00 0.00 0.00 2.57
2355 11390 7.828717 TGCATGTTGTCATCCTTCTTATCTTTA 59.171 33.333 0.00 0.00 31.15 1.85
2359 11394 6.039047 ACATGCATGTTGTCATCCTTCTTATC 59.961 38.462 26.61 0.00 37.90 1.75
2362 11397 4.084287 ACATGCATGTTGTCATCCTTCTT 58.916 39.130 26.61 0.00 37.90 2.52
2363 11398 3.693807 ACATGCATGTTGTCATCCTTCT 58.306 40.909 26.61 0.00 37.90 2.85
2376 11411 2.621526 ACTGCCACATCATACATGCATG 59.378 45.455 25.09 25.09 0.00 4.06
2436 11473 8.293157 TGCAAAATTTGTCACATATCGAACTTA 58.707 29.630 7.60 0.00 0.00 2.24
2442 11479 5.276489 GCCATGCAAAATTTGTCACATATCG 60.276 40.000 7.60 0.00 0.00 2.92
2444 11481 5.736813 AGCCATGCAAAATTTGTCACATAT 58.263 33.333 7.60 0.00 0.00 1.78
2447 11484 3.472283 AGCCATGCAAAATTTGTCACA 57.528 38.095 7.60 0.00 0.00 3.58
2451 11488 2.879646 CACCAAGCCATGCAAAATTTGT 59.120 40.909 7.60 0.00 0.00 2.83
2454 11491 1.271488 CCCACCAAGCCATGCAAAATT 60.271 47.619 0.00 0.00 0.00 1.82
2468 11505 6.552008 ACATTTTAAATCTTCTCTCCCACCA 58.448 36.000 0.00 0.00 0.00 4.17
2469 11506 6.887002 AGACATTTTAAATCTTCTCTCCCACC 59.113 38.462 0.00 0.00 0.00 4.61
2526 11621 8.776061 AGGCTATGTATTAAGTCTTCTCTTCT 57.224 34.615 0.00 0.00 0.00 2.85
2546 11641 7.857456 TCACCTCAATGTCTTTATTAAGGCTA 58.143 34.615 0.00 0.00 36.91 3.93
2547 11642 6.721318 TCACCTCAATGTCTTTATTAAGGCT 58.279 36.000 0.00 0.00 36.91 4.58
2548 11643 7.283127 TGATCACCTCAATGTCTTTATTAAGGC 59.717 37.037 0.00 0.00 36.51 4.35
2550 11645 9.388506 AGTGATCACCTCAATGTCTTTATTAAG 57.611 33.333 22.21 0.00 35.07 1.85
2556 11651 5.278660 GCAAAGTGATCACCTCAATGTCTTT 60.279 40.000 22.21 9.78 35.07 2.52
2559 11654 3.755378 AGCAAAGTGATCACCTCAATGTC 59.245 43.478 22.21 10.00 35.07 3.06
2562 11657 4.401022 TGAAGCAAAGTGATCACCTCAAT 58.599 39.130 22.21 4.86 35.07 2.57
2571 11666 2.226962 AGCCCATGAAGCAAAGTGAT 57.773 45.000 9.90 0.00 0.00 3.06
2572 11667 2.877097 TAGCCCATGAAGCAAAGTGA 57.123 45.000 9.90 0.00 0.00 3.41
2577 11672 3.700538 AGAACATTAGCCCATGAAGCAA 58.299 40.909 9.90 3.66 0.00 3.91
2626 11721 1.981256 AATGGTGTTTGTTCCTCGCT 58.019 45.000 0.00 0.00 0.00 4.93
2675 11770 8.437360 ACGAAGATTGTTGCATTATCTCAATA 57.563 30.769 6.29 0.00 0.00 1.90
2766 11862 6.738114 ACCATTGCACTGTACATATTAATGC 58.262 36.000 3.14 1.02 36.50 3.56
2779 11875 1.888512 GGGGCATATACCATTGCACTG 59.111 52.381 0.00 0.00 42.01 3.66
2809 11905 5.279657 GGAGGCATTTCAAAAGAAATCTGGT 60.280 40.000 0.76 0.00 32.97 4.00
2810 11906 5.046807 AGGAGGCATTTCAAAAGAAATCTGG 60.047 40.000 0.76 0.00 32.97 3.86
2860 11956 4.873827 GGATGAAACATAGAGGCGTACAAA 59.126 41.667 0.00 0.00 0.00 2.83
2866 11964 3.459232 TCTGGATGAAACATAGAGGCG 57.541 47.619 0.00 0.00 0.00 5.52
2882 11980 4.321527 GGAGGCACTTCAAAAGAAATCTGG 60.322 45.833 0.00 0.00 41.55 3.86
2896 11994 3.629142 ACGCTTAAATAGGAGGCACTT 57.371 42.857 0.00 0.00 41.55 3.16
2971 12069 8.116026 AGGTGACAAATTAGAATACTCCCATTT 58.884 33.333 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.