Multiple sequence alignment - TraesCS1D01G368900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G368900 chr1D 100.000 4979 0 0 1 4979 448023613 448018635 0.000000e+00 9195.0
1 TraesCS1D01G368900 chr1D 96.364 55 1 1 4753 4806 448018811 448018757 6.870000e-14 89.8
2 TraesCS1D01G368900 chr1D 96.364 55 1 1 4803 4857 448018861 448018808 6.870000e-14 89.8
3 TraesCS1D01G368900 chr1B 89.868 2961 149 56 357 3215 613425666 613422755 0.000000e+00 3666.0
4 TraesCS1D01G368900 chr1B 89.930 1281 72 27 3308 4563 613422743 613421495 0.000000e+00 1598.0
5 TraesCS1D01G368900 chr1B 82.243 214 23 8 4593 4806 613421496 613421298 2.380000e-38 171.0
6 TraesCS1D01G368900 chr1B 90.816 98 9 0 4811 4908 613421344 613421247 1.120000e-26 132.0
7 TraesCS1D01G368900 chr1A 87.987 2980 158 78 330 3218 544058909 544056039 0.000000e+00 3336.0
8 TraesCS1D01G368900 chr1A 87.440 1449 125 33 3284 4705 544055593 544054175 0.000000e+00 1615.0
9 TraesCS1D01G368900 chr1A 92.857 98 7 0 4811 4908 544054086 544053989 5.200000e-30 143.0
10 TraesCS1D01G368900 chr4A 87.640 89 8 3 4605 4691 590947741 590947828 3.170000e-17 100.0
11 TraesCS1D01G368900 chr3A 82.979 94 13 3 4601 4691 429753993 429753900 1.150000e-11 82.4
12 TraesCS1D01G368900 chr3A 81.176 85 15 1 4603 4686 545359303 545359387 3.220000e-07 67.6
13 TraesCS1D01G368900 chr7B 85.135 74 9 2 4620 4691 156634016 156633943 1.920000e-09 75.0
14 TraesCS1D01G368900 chr2A 87.931 58 7 0 4605 4662 676177807 676177864 8.940000e-08 69.4
15 TraesCS1D01G368900 chr7D 84.615 65 9 1 4600 4663 530348227 530348163 4.160000e-06 63.9
16 TraesCS1D01G368900 chr2D 83.607 61 9 1 4605 4664 207479182 207479242 6.960000e-04 56.5
17 TraesCS1D01G368900 chr2D 94.286 35 1 1 299 333 11250470 11250503 9.000000e-03 52.8
18 TraesCS1D01G368900 chr6D 96.875 32 1 0 307 338 191651438 191651407 3.000000e-03 54.7
19 TraesCS1D01G368900 chr5B 96.774 31 1 0 307 337 127198233 127198203 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G368900 chr1D 448018635 448023613 4978 True 9195.00 9195 100.00000 1 4979 1 chr1D.!!$R1 4978
1 TraesCS1D01G368900 chr1B 613421247 613425666 4419 True 1391.75 3666 88.21425 357 4908 4 chr1B.!!$R1 4551
2 TraesCS1D01G368900 chr1A 544053989 544058909 4920 True 1698.00 3336 89.42800 330 4908 3 chr1A.!!$R1 4578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
194 195 0.035820 TACGGGACCTTTGCATCCAC 60.036 55.0 6.42 0.0 36.65 4.02 F
332 333 0.042131 ATGGAACGGAGGGAGTACCA 59.958 55.0 0.00 0.0 43.89 3.25 F
333 334 0.042131 TGGAACGGAGGGAGTACCAT 59.958 55.0 0.00 0.0 43.89 3.55 F
488 505 0.109086 TAGCACAGCGCAACTCTCTC 60.109 55.0 11.47 0.0 46.13 3.20 F
491 508 0.243365 CACAGCGCAACTCTCTCTCT 59.757 55.0 11.47 0.0 0.00 3.10 F
1702 1803 0.249398 GAAGAAACAGAGGGCGGCTA 59.751 55.0 9.56 0.0 0.00 3.93 F
2082 2190 0.740149 CAACTTTGCCAGTGCTGACA 59.260 50.0 0.02 0.0 35.12 3.58 F
3256 3819 0.105593 CACACTGACCACAGACTGCT 59.894 55.0 1.25 0.0 46.03 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1715 0.097674 ATGAAAGCAATCGCGACAGC 59.902 50.000 22.69 22.69 45.49 4.40 R
1621 1717 0.726827 GGATGAAAGCAATCGCGACA 59.273 50.000 12.93 2.69 45.49 4.35 R
1622 1718 0.726827 TGGATGAAAGCAATCGCGAC 59.273 50.000 12.93 0.00 45.49 5.19 R
2063 2164 0.740149 TGTCAGCACTGGCAAAGTTG 59.260 50.000 1.70 0.00 42.89 3.16 R
2196 2304 4.012374 TGCATCCTCAATTTCTCACCTTC 58.988 43.478 0.00 0.00 0.00 3.46 R
3241 3804 0.108424 GCCTAGCAGTCTGTGGTCAG 60.108 60.000 0.93 0.00 42.54 3.51 R
3898 4471 1.128692 GTGCTCAAACGCCATCACTAC 59.871 52.381 0.00 0.00 0.00 2.73 R
4728 5372 0.391130 AACTATGACGGCGTGTGCAT 60.391 50.000 21.19 17.62 45.35 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.760077 AGAAAGTTATTACAATACTATCCGTGG 57.240 33.333 0.00 0.00 0.00 4.94
30 31 9.754382 GAAAGTTATTACAATACTATCCGTGGA 57.246 33.333 0.00 0.00 0.00 4.02
32 33 9.706691 AAGTTATTACAATACTATCCGTGGATG 57.293 33.333 11.68 4.53 36.17 3.51
33 34 7.817962 AGTTATTACAATACTATCCGTGGATGC 59.182 37.037 11.68 0.00 36.17 3.91
34 35 5.801531 TTACAATACTATCCGTGGATGCT 57.198 39.130 11.68 0.00 36.17 3.79
35 36 3.995199 ACAATACTATCCGTGGATGCTG 58.005 45.455 11.68 4.59 36.17 4.41
36 37 3.244215 ACAATACTATCCGTGGATGCTGG 60.244 47.826 11.68 2.35 36.17 4.85
37 38 2.375014 TACTATCCGTGGATGCTGGA 57.625 50.000 11.68 1.58 36.17 3.86
38 39 1.043816 ACTATCCGTGGATGCTGGAG 58.956 55.000 11.68 3.13 34.75 3.86
39 40 0.320247 CTATCCGTGGATGCTGGAGC 60.320 60.000 11.68 0.00 42.50 4.70
40 41 0.760567 TATCCGTGGATGCTGGAGCT 60.761 55.000 11.68 0.00 42.66 4.09
41 42 2.321263 ATCCGTGGATGCTGGAGCTG 62.321 60.000 0.00 0.00 42.66 4.24
42 43 2.267006 CGTGGATGCTGGAGCTGT 59.733 61.111 0.00 0.00 42.66 4.40
43 44 1.376424 CGTGGATGCTGGAGCTGTT 60.376 57.895 0.00 0.00 42.66 3.16
44 45 0.957395 CGTGGATGCTGGAGCTGTTT 60.957 55.000 0.00 0.00 42.66 2.83
45 46 0.807496 GTGGATGCTGGAGCTGTTTC 59.193 55.000 0.00 0.00 42.66 2.78
46 47 0.694771 TGGATGCTGGAGCTGTTTCT 59.305 50.000 0.00 0.00 42.66 2.52
47 48 1.074405 TGGATGCTGGAGCTGTTTCTT 59.926 47.619 0.00 0.00 42.66 2.52
48 49 2.165998 GGATGCTGGAGCTGTTTCTTT 58.834 47.619 0.00 0.00 42.66 2.52
49 50 2.560105 GGATGCTGGAGCTGTTTCTTTT 59.440 45.455 0.00 0.00 42.66 2.27
50 51 3.006217 GGATGCTGGAGCTGTTTCTTTTT 59.994 43.478 0.00 0.00 42.66 1.94
51 52 3.715628 TGCTGGAGCTGTTTCTTTTTC 57.284 42.857 0.00 0.00 42.66 2.29
52 53 3.023119 TGCTGGAGCTGTTTCTTTTTCA 58.977 40.909 0.00 0.00 42.66 2.69
53 54 3.638160 TGCTGGAGCTGTTTCTTTTTCAT 59.362 39.130 0.00 0.00 42.66 2.57
54 55 4.233005 GCTGGAGCTGTTTCTTTTTCATC 58.767 43.478 0.00 0.00 38.21 2.92
55 56 4.261741 GCTGGAGCTGTTTCTTTTTCATCA 60.262 41.667 0.00 0.00 38.21 3.07
56 57 5.566230 GCTGGAGCTGTTTCTTTTTCATCAT 60.566 40.000 0.00 0.00 38.21 2.45
57 58 6.409524 TGGAGCTGTTTCTTTTTCATCATT 57.590 33.333 0.00 0.00 0.00 2.57
58 59 7.523293 TGGAGCTGTTTCTTTTTCATCATTA 57.477 32.000 0.00 0.00 0.00 1.90
59 60 7.950512 TGGAGCTGTTTCTTTTTCATCATTAA 58.049 30.769 0.00 0.00 0.00 1.40
60 61 8.420222 TGGAGCTGTTTCTTTTTCATCATTAAA 58.580 29.630 0.00 0.00 0.00 1.52
61 62 9.260002 GGAGCTGTTTCTTTTTCATCATTAAAA 57.740 29.630 0.00 0.00 0.00 1.52
89 90 7.585579 TTTCCATGCATATCTTCAAATAGCA 57.414 32.000 0.00 0.00 34.78 3.49
90 91 7.770366 TTCCATGCATATCTTCAAATAGCAT 57.230 32.000 0.00 0.00 41.42 3.79
91 92 7.770366 TCCATGCATATCTTCAAATAGCATT 57.230 32.000 0.00 0.00 39.00 3.56
92 93 7.823665 TCCATGCATATCTTCAAATAGCATTC 58.176 34.615 0.00 0.00 39.00 2.67
93 94 7.668469 TCCATGCATATCTTCAAATAGCATTCT 59.332 33.333 0.00 0.00 39.00 2.40
94 95 8.953313 CCATGCATATCTTCAAATAGCATTCTA 58.047 33.333 0.00 0.00 39.00 2.10
121 122 3.418675 TTTTTCGTGCACGCCAAAA 57.581 42.105 33.63 31.23 39.60 2.44
122 123 1.927895 TTTTTCGTGCACGCCAAAAT 58.072 40.000 33.63 0.00 39.60 1.82
123 124 1.203928 TTTTCGTGCACGCCAAAATG 58.796 45.000 33.63 6.04 39.60 2.32
124 125 1.211818 TTTCGTGCACGCCAAAATGC 61.212 50.000 33.63 0.00 42.40 3.56
132 133 4.359475 GCCAAAATGCGCCAAAGT 57.641 50.000 4.18 0.00 0.00 2.66
133 134 1.861440 GCCAAAATGCGCCAAAGTG 59.139 52.632 4.18 0.00 0.00 3.16
134 135 0.599728 GCCAAAATGCGCCAAAGTGA 60.600 50.000 4.18 0.00 0.00 3.41
135 136 1.863267 CCAAAATGCGCCAAAGTGAA 58.137 45.000 4.18 0.00 0.00 3.18
136 137 2.208431 CCAAAATGCGCCAAAGTGAAA 58.792 42.857 4.18 0.00 0.00 2.69
137 138 2.032979 CCAAAATGCGCCAAAGTGAAAC 60.033 45.455 4.18 0.00 0.00 2.78
138 139 2.593346 AAATGCGCCAAAGTGAAACA 57.407 40.000 4.18 0.00 41.43 2.83
139 140 2.593346 AATGCGCCAAAGTGAAACAA 57.407 40.000 4.18 0.00 41.43 2.83
140 141 2.593346 ATGCGCCAAAGTGAAACAAA 57.407 40.000 4.18 0.00 41.43 2.83
141 142 2.593346 TGCGCCAAAGTGAAACAAAT 57.407 40.000 4.18 0.00 41.43 2.32
142 143 2.898705 TGCGCCAAAGTGAAACAAATT 58.101 38.095 4.18 0.00 41.43 1.82
143 144 3.265791 TGCGCCAAAGTGAAACAAATTT 58.734 36.364 4.18 0.00 41.43 1.82
144 145 4.433615 TGCGCCAAAGTGAAACAAATTTA 58.566 34.783 4.18 0.00 41.43 1.40
145 146 4.505922 TGCGCCAAAGTGAAACAAATTTAG 59.494 37.500 4.18 0.00 41.43 1.85
146 147 4.608222 GCGCCAAAGTGAAACAAATTTAGC 60.608 41.667 0.00 0.00 41.43 3.09
147 148 4.374906 CGCCAAAGTGAAACAAATTTAGCG 60.375 41.667 0.00 0.00 41.43 4.26
148 149 4.506288 GCCAAAGTGAAACAAATTTAGCGT 59.494 37.500 0.00 0.00 41.43 5.07
149 150 5.006261 GCCAAAGTGAAACAAATTTAGCGTT 59.994 36.000 0.00 0.00 41.43 4.84
150 151 6.456315 GCCAAAGTGAAACAAATTTAGCGTTT 60.456 34.615 5.15 5.15 41.43 3.60
151 152 7.116819 CCAAAGTGAAACAAATTTAGCGTTTC 58.883 34.615 18.67 18.67 45.55 2.78
154 155 4.288132 GAAACAAATTTAGCGTTTCGGC 57.712 40.909 13.62 0.00 39.18 5.54
155 156 2.341318 ACAAATTTAGCGTTTCGGCC 57.659 45.000 0.00 0.00 0.00 6.13
156 157 1.609555 ACAAATTTAGCGTTTCGGCCA 59.390 42.857 2.24 0.00 0.00 5.36
157 158 2.230266 ACAAATTTAGCGTTTCGGCCAT 59.770 40.909 2.24 0.00 0.00 4.40
158 159 2.844122 AATTTAGCGTTTCGGCCATC 57.156 45.000 2.24 0.00 0.00 3.51
159 160 2.038387 ATTTAGCGTTTCGGCCATCT 57.962 45.000 2.24 0.00 0.00 2.90
160 161 1.365699 TTTAGCGTTTCGGCCATCTC 58.634 50.000 2.24 0.00 0.00 2.75
161 162 0.461339 TTAGCGTTTCGGCCATCTCC 60.461 55.000 2.24 0.00 0.00 3.71
162 163 1.327690 TAGCGTTTCGGCCATCTCCT 61.328 55.000 2.24 0.00 0.00 3.69
163 164 1.745489 GCGTTTCGGCCATCTCCTT 60.745 57.895 2.24 0.00 0.00 3.36
164 165 0.461339 GCGTTTCGGCCATCTCCTTA 60.461 55.000 2.24 0.00 0.00 2.69
165 166 2.010043 GCGTTTCGGCCATCTCCTTAA 61.010 52.381 2.24 0.00 0.00 1.85
166 167 1.933853 CGTTTCGGCCATCTCCTTAAG 59.066 52.381 2.24 0.00 0.00 1.85
167 168 1.671328 GTTTCGGCCATCTCCTTAAGC 59.329 52.381 2.24 0.00 0.00 3.09
168 169 0.180406 TTCGGCCATCTCCTTAAGCC 59.820 55.000 2.24 0.00 40.33 4.35
169 170 0.691078 TCGGCCATCTCCTTAAGCCT 60.691 55.000 2.24 0.00 41.60 4.58
170 171 1.048601 CGGCCATCTCCTTAAGCCTA 58.951 55.000 2.24 0.00 41.60 3.93
171 172 1.625818 CGGCCATCTCCTTAAGCCTAT 59.374 52.381 2.24 0.00 41.60 2.57
172 173 2.354203 CGGCCATCTCCTTAAGCCTATC 60.354 54.545 2.24 0.00 41.60 2.08
173 174 2.639839 GGCCATCTCCTTAAGCCTATCA 59.360 50.000 0.00 0.00 40.57 2.15
174 175 3.073062 GGCCATCTCCTTAAGCCTATCAA 59.927 47.826 0.00 0.00 40.57 2.57
175 176 4.263683 GGCCATCTCCTTAAGCCTATCAAT 60.264 45.833 0.00 0.00 40.57 2.57
176 177 5.045578 GGCCATCTCCTTAAGCCTATCAATA 60.046 44.000 0.00 0.00 40.57 1.90
177 178 5.877564 GCCATCTCCTTAAGCCTATCAATAC 59.122 44.000 0.00 0.00 0.00 1.89
178 179 6.102663 CCATCTCCTTAAGCCTATCAATACG 58.897 44.000 0.00 0.00 0.00 3.06
179 180 5.723672 TCTCCTTAAGCCTATCAATACGG 57.276 43.478 0.00 0.00 0.00 4.02
180 181 4.527038 TCTCCTTAAGCCTATCAATACGGG 59.473 45.833 0.00 0.00 0.00 5.28
181 182 4.485875 TCCTTAAGCCTATCAATACGGGA 58.514 43.478 0.00 0.00 0.00 5.14
182 183 4.282703 TCCTTAAGCCTATCAATACGGGAC 59.717 45.833 0.00 0.00 0.00 4.46
183 184 4.562963 CCTTAAGCCTATCAATACGGGACC 60.563 50.000 0.00 0.00 0.00 4.46
184 185 2.400467 AGCCTATCAATACGGGACCT 57.600 50.000 0.00 0.00 0.00 3.85
185 186 2.690840 AGCCTATCAATACGGGACCTT 58.309 47.619 0.00 0.00 0.00 3.50
186 187 3.046374 AGCCTATCAATACGGGACCTTT 58.954 45.455 0.00 0.00 0.00 3.11
187 188 3.139077 GCCTATCAATACGGGACCTTTG 58.861 50.000 0.00 0.00 0.00 2.77
188 189 3.139077 CCTATCAATACGGGACCTTTGC 58.861 50.000 0.00 0.00 0.00 3.68
189 190 2.799126 ATCAATACGGGACCTTTGCA 57.201 45.000 0.00 0.00 0.00 4.08
190 191 2.799126 TCAATACGGGACCTTTGCAT 57.201 45.000 0.00 0.00 0.00 3.96
191 192 2.639065 TCAATACGGGACCTTTGCATC 58.361 47.619 0.00 0.00 0.00 3.91
192 193 1.676006 CAATACGGGACCTTTGCATCC 59.324 52.381 0.00 0.00 0.00 3.51
193 194 0.916086 ATACGGGACCTTTGCATCCA 59.084 50.000 6.42 0.00 36.65 3.41
194 195 0.035820 TACGGGACCTTTGCATCCAC 60.036 55.000 6.42 0.00 36.65 4.02
195 196 1.303236 CGGGACCTTTGCATCCACA 60.303 57.895 6.42 0.00 36.65 4.17
196 197 1.586154 CGGGACCTTTGCATCCACAC 61.586 60.000 6.42 0.00 36.65 3.82
197 198 1.250840 GGGACCTTTGCATCCACACC 61.251 60.000 6.42 0.00 36.65 4.16
198 199 1.250840 GGACCTTTGCATCCACACCC 61.251 60.000 0.00 0.00 34.87 4.61
199 200 0.251341 GACCTTTGCATCCACACCCT 60.251 55.000 0.00 0.00 0.00 4.34
200 201 0.540365 ACCTTTGCATCCACACCCTG 60.540 55.000 0.00 0.00 0.00 4.45
201 202 0.540365 CCTTTGCATCCACACCCTGT 60.540 55.000 0.00 0.00 0.00 4.00
202 203 1.331214 CTTTGCATCCACACCCTGTT 58.669 50.000 0.00 0.00 0.00 3.16
203 204 1.270550 CTTTGCATCCACACCCTGTTC 59.729 52.381 0.00 0.00 0.00 3.18
204 205 0.478072 TTGCATCCACACCCTGTTCT 59.522 50.000 0.00 0.00 0.00 3.01
205 206 0.478072 TGCATCCACACCCTGTTCTT 59.522 50.000 0.00 0.00 0.00 2.52
206 207 1.133513 TGCATCCACACCCTGTTCTTT 60.134 47.619 0.00 0.00 0.00 2.52
207 208 1.270550 GCATCCACACCCTGTTCTTTG 59.729 52.381 0.00 0.00 0.00 2.77
208 209 2.586425 CATCCACACCCTGTTCTTTGT 58.414 47.619 0.00 0.00 0.00 2.83
209 210 3.750371 CATCCACACCCTGTTCTTTGTA 58.250 45.455 0.00 0.00 0.00 2.41
210 211 4.335416 CATCCACACCCTGTTCTTTGTAT 58.665 43.478 0.00 0.00 0.00 2.29
211 212 5.496556 CATCCACACCCTGTTCTTTGTATA 58.503 41.667 0.00 0.00 0.00 1.47
212 213 5.160607 TCCACACCCTGTTCTTTGTATAG 57.839 43.478 0.00 0.00 0.00 1.31
213 214 4.019681 TCCACACCCTGTTCTTTGTATAGG 60.020 45.833 0.00 0.00 0.00 2.57
214 215 4.019681 CCACACCCTGTTCTTTGTATAGGA 60.020 45.833 0.00 0.00 0.00 2.94
215 216 5.178797 CACACCCTGTTCTTTGTATAGGAG 58.821 45.833 0.00 0.00 0.00 3.69
216 217 4.844655 ACACCCTGTTCTTTGTATAGGAGT 59.155 41.667 0.00 0.00 0.00 3.85
217 218 5.309806 ACACCCTGTTCTTTGTATAGGAGTT 59.690 40.000 0.00 0.00 0.00 3.01
218 219 6.183361 ACACCCTGTTCTTTGTATAGGAGTTT 60.183 38.462 0.00 0.00 0.00 2.66
219 220 7.016858 ACACCCTGTTCTTTGTATAGGAGTTTA 59.983 37.037 0.00 0.00 0.00 2.01
220 221 8.047310 CACCCTGTTCTTTGTATAGGAGTTTAT 58.953 37.037 0.00 0.00 0.00 1.40
221 222 8.612145 ACCCTGTTCTTTGTATAGGAGTTTATT 58.388 33.333 0.00 0.00 0.00 1.40
222 223 9.110502 CCCTGTTCTTTGTATAGGAGTTTATTC 57.889 37.037 0.00 0.00 0.00 1.75
223 224 9.667107 CCTGTTCTTTGTATAGGAGTTTATTCA 57.333 33.333 0.00 0.00 0.00 2.57
247 248 9.862149 TCACATGTCTTTATATACTACTCTCCA 57.138 33.333 0.00 0.00 0.00 3.86
261 262 9.742144 ATACTACTCTCCATTTCACGATATAGT 57.258 33.333 0.00 0.00 0.00 2.12
262 263 7.877003 ACTACTCTCCATTTCACGATATAGTG 58.123 38.462 9.49 9.49 43.11 2.74
263 264 5.533482 ACTCTCCATTTCACGATATAGTGC 58.467 41.667 10.80 0.00 41.61 4.40
264 265 4.546570 TCTCCATTTCACGATATAGTGCG 58.453 43.478 10.80 0.00 41.61 5.34
265 266 3.057019 TCCATTTCACGATATAGTGCGC 58.943 45.455 10.80 0.00 41.61 6.09
266 267 3.059884 CCATTTCACGATATAGTGCGCT 58.940 45.455 9.73 4.58 41.61 5.92
267 268 3.121944 CCATTTCACGATATAGTGCGCTC 59.878 47.826 9.73 4.74 41.61 5.03
268 269 2.032414 TTCACGATATAGTGCGCTCG 57.968 50.000 9.73 11.23 41.61 5.03
269 270 0.385598 TCACGATATAGTGCGCTCGC 60.386 55.000 9.73 7.38 41.61 5.03
270 271 1.440518 ACGATATAGTGCGCTCGCG 60.441 57.895 9.73 6.98 45.51 5.87
271 272 1.440518 CGATATAGTGCGCTCGCGT 60.441 57.895 9.73 2.19 45.51 6.01
272 273 0.997226 CGATATAGTGCGCTCGCGTT 60.997 55.000 9.73 2.95 45.51 4.84
273 274 1.129326 GATATAGTGCGCTCGCGTTT 58.871 50.000 9.73 1.86 45.51 3.60
274 275 1.521423 GATATAGTGCGCTCGCGTTTT 59.479 47.619 9.73 1.52 45.51 2.43
275 276 1.352114 TATAGTGCGCTCGCGTTTTT 58.648 45.000 9.73 0.00 45.51 1.94
321 322 8.262715 TGCATACACATTATATTATGGAACGG 57.737 34.615 6.65 0.00 0.00 4.44
322 323 8.097662 TGCATACACATTATATTATGGAACGGA 58.902 33.333 6.65 0.00 0.00 4.69
323 324 8.604035 GCATACACATTATATTATGGAACGGAG 58.396 37.037 6.65 0.00 0.00 4.63
324 325 9.098355 CATACACATTATATTATGGAACGGAGG 57.902 37.037 6.65 0.00 0.00 4.30
325 326 6.472887 ACACATTATATTATGGAACGGAGGG 58.527 40.000 6.65 0.00 0.00 4.30
326 327 6.271391 ACACATTATATTATGGAACGGAGGGA 59.729 38.462 6.65 0.00 0.00 4.20
327 328 6.818644 CACATTATATTATGGAACGGAGGGAG 59.181 42.308 6.65 0.00 0.00 4.30
328 329 6.500751 ACATTATATTATGGAACGGAGGGAGT 59.499 38.462 6.65 0.00 0.00 3.85
329 330 7.676893 ACATTATATTATGGAACGGAGGGAGTA 59.323 37.037 6.65 0.00 0.00 2.59
330 331 5.997384 ATATTATGGAACGGAGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
331 332 2.077687 TATGGAACGGAGGGAGTACC 57.922 55.000 0.00 0.00 40.67 3.34
332 333 0.042131 ATGGAACGGAGGGAGTACCA 59.958 55.000 0.00 0.00 43.89 3.25
333 334 0.042131 TGGAACGGAGGGAGTACCAT 59.958 55.000 0.00 0.00 43.89 3.55
342 343 4.689150 CGGAGGGAGTACCATCTTCTCTTA 60.689 50.000 0.00 0.00 45.10 2.10
434 446 3.937062 CGCGGCGGCTTTATCCAC 61.937 66.667 15.84 0.00 36.88 4.02
450 462 1.164041 CCACCCACAAGTTCGTCCAC 61.164 60.000 0.00 0.00 0.00 4.02
459 476 2.131776 AGTTCGTCCACCCACAAAAA 57.868 45.000 0.00 0.00 0.00 1.94
460 477 1.746787 AGTTCGTCCACCCACAAAAAC 59.253 47.619 0.00 0.00 0.00 2.43
480 497 2.223688 ACAAAACAAATAGCACAGCGCA 60.224 40.909 11.47 0.00 46.13 6.09
485 502 1.466167 CAAATAGCACAGCGCAACTCT 59.534 47.619 11.47 3.65 46.13 3.24
486 503 1.363744 AATAGCACAGCGCAACTCTC 58.636 50.000 11.47 0.00 46.13 3.20
487 504 0.534412 ATAGCACAGCGCAACTCTCT 59.466 50.000 11.47 0.86 46.13 3.10
488 505 0.109086 TAGCACAGCGCAACTCTCTC 60.109 55.000 11.47 0.00 46.13 3.20
489 506 1.373999 GCACAGCGCAACTCTCTCT 60.374 57.895 11.47 0.00 41.79 3.10
490 507 1.350706 GCACAGCGCAACTCTCTCTC 61.351 60.000 11.47 0.00 41.79 3.20
491 508 0.243365 CACAGCGCAACTCTCTCTCT 59.757 55.000 11.47 0.00 0.00 3.10
492 509 0.525761 ACAGCGCAACTCTCTCTCTC 59.474 55.000 11.47 0.00 0.00 3.20
493 510 0.810648 CAGCGCAACTCTCTCTCTCT 59.189 55.000 11.47 0.00 0.00 3.10
494 511 1.094785 AGCGCAACTCTCTCTCTCTC 58.905 55.000 11.47 0.00 0.00 3.20
495 512 1.094785 GCGCAACTCTCTCTCTCTCT 58.905 55.000 0.30 0.00 0.00 3.10
496 513 1.064060 GCGCAACTCTCTCTCTCTCTC 59.936 57.143 0.30 0.00 0.00 3.20
497 514 2.632377 CGCAACTCTCTCTCTCTCTCT 58.368 52.381 0.00 0.00 0.00 3.10
693 717 1.089481 CCATCCATCCACGTGTTCCG 61.089 60.000 15.65 0.00 44.03 4.30
695 719 2.869503 ATCCATCCACGTGTTCCGGC 62.870 60.000 15.65 0.00 42.24 6.13
696 720 2.358125 CATCCACGTGTTCCGGCA 60.358 61.111 15.65 0.00 42.24 5.69
697 721 2.358247 ATCCACGTGTTCCGGCAC 60.358 61.111 15.65 0.00 42.24 5.01
700 732 4.012895 CACGTGTTCCGGCACAGC 62.013 66.667 7.34 1.96 42.24 4.40
801 850 1.917336 TAAATCGCCCGCCCTTTCCT 61.917 55.000 0.00 0.00 0.00 3.36
881 931 3.953775 CAGCCCGACCCACCTGTT 61.954 66.667 0.00 0.00 0.00 3.16
927 978 7.179160 AGCTAAATAAATCCATAAATCCCTGGC 59.821 37.037 0.00 0.00 32.30 4.85
942 998 0.756442 CTGGCAGAGAGAGGGAGAGG 60.756 65.000 9.42 0.00 0.00 3.69
963 1019 3.606662 CAGGCGATCGATCCCGGT 61.607 66.667 21.57 4.65 36.24 5.28
1139 1196 2.833227 CCCCCGGCCAATTCGATA 59.167 61.111 2.24 0.00 0.00 2.92
1140 1197 1.599797 CCCCCGGCCAATTCGATAC 60.600 63.158 2.24 0.00 0.00 2.24
1141 1198 1.147376 CCCCGGCCAATTCGATACA 59.853 57.895 2.24 0.00 0.00 2.29
1142 1199 0.884704 CCCCGGCCAATTCGATACAG 60.885 60.000 2.24 0.00 0.00 2.74
1144 1201 0.937304 CCGGCCAATTCGATACAGTG 59.063 55.000 2.24 0.00 0.00 3.66
1145 1202 0.937304 CGGCCAATTCGATACAGTGG 59.063 55.000 2.24 0.00 0.00 4.00
1146 1203 1.472552 CGGCCAATTCGATACAGTGGA 60.473 52.381 2.24 0.00 0.00 4.02
1211 1282 2.100605 ATGGTTCTTCGCTTCAGGTC 57.899 50.000 0.00 0.00 0.00 3.85
1464 1549 2.832129 ACTCGTGAGTCTCTCTCTCTCT 59.168 50.000 0.65 0.00 43.13 3.10
1465 1550 3.119101 ACTCGTGAGTCTCTCTCTCTCTC 60.119 52.174 0.65 0.00 43.13 3.20
1501 1586 2.573369 TCCAAATTTCCGTCGGTTTCA 58.427 42.857 11.88 0.00 0.00 2.69
1605 1701 3.634730 ATGCACGTTTTACTCGATTCG 57.365 42.857 0.00 0.00 0.00 3.34
1606 1702 2.663808 TGCACGTTTTACTCGATTCGA 58.336 42.857 8.70 8.70 0.00 3.71
1607 1703 3.247442 TGCACGTTTTACTCGATTCGAT 58.753 40.909 9.54 3.06 34.61 3.59
1608 1704 3.676172 TGCACGTTTTACTCGATTCGATT 59.324 39.130 9.54 6.69 34.61 3.34
1609 1705 4.201551 TGCACGTTTTACTCGATTCGATTC 60.202 41.667 9.54 0.00 34.61 2.52
1619 1715 2.297315 TCGATTCGATTCATCCTCCCTG 59.703 50.000 4.29 0.00 0.00 4.45
1621 1717 1.500474 TTCGATTCATCCTCCCTGCT 58.500 50.000 0.00 0.00 0.00 4.24
1622 1718 0.755079 TCGATTCATCCTCCCTGCTG 59.245 55.000 0.00 0.00 0.00 4.41
1639 1735 1.853646 GCTGTCGCGATTGCTTTCATC 60.854 52.381 22.87 4.29 39.65 2.92
1650 1746 5.514204 CGATTGCTTTCATCCATGAGAAAAC 59.486 40.000 0.00 0.00 38.19 2.43
1655 1751 7.541162 TGCTTTCATCCATGAGAAAACAATAG 58.459 34.615 0.00 0.00 38.19 1.73
1658 1754 9.994432 CTTTCATCCATGAGAAAACAATAGTAC 57.006 33.333 0.00 0.00 38.19 2.73
1699 1800 0.391793 GAGGAAGAAACAGAGGGCGG 60.392 60.000 0.00 0.00 0.00 6.13
1701 1802 1.003233 GAAGAAACAGAGGGCGGCT 60.003 57.895 9.56 0.00 0.00 5.52
1702 1803 0.249398 GAAGAAACAGAGGGCGGCTA 59.751 55.000 9.56 0.00 0.00 3.93
1751 1852 1.376812 AAACGGCCGATGGTTCTCC 60.377 57.895 35.90 0.00 0.00 3.71
1788 1889 3.924918 TGAACGACCTTCTCTTCTCTG 57.075 47.619 0.00 0.00 0.00 3.35
1789 1890 2.558795 TGAACGACCTTCTCTTCTCTGG 59.441 50.000 0.00 0.00 0.00 3.86
1796 1897 0.891373 TTCTCTTCTCTGGCAGGACG 59.109 55.000 15.73 8.69 0.00 4.79
1797 1898 0.967887 TCTCTTCTCTGGCAGGACGG 60.968 60.000 15.73 6.71 0.00 4.79
2007 2108 4.439305 TGTTGCAACCTGCTTATTCATC 57.561 40.909 26.14 0.00 45.31 2.92
2018 2119 3.117888 TGCTTATTCATCTGGGGAGTTCC 60.118 47.826 0.00 0.00 0.00 3.62
2063 2164 4.082733 GGGGTTACTTTGTTTGAGATGAGC 60.083 45.833 0.00 0.00 0.00 4.26
2082 2190 0.740149 CAACTTTGCCAGTGCTGACA 59.260 50.000 0.02 0.00 35.12 3.58
2151 2259 1.153429 CCGGTTCTTAAGGGCGAGG 60.153 63.158 1.85 0.00 0.00 4.63
2196 2304 3.055675 TGGACTTGGAAACCCACTATACG 60.056 47.826 0.00 0.00 32.44 3.06
2386 2496 7.170828 TGAATGTCATATATACTTGCACGGAAC 59.829 37.037 0.00 0.00 0.00 3.62
2532 2668 5.878406 AAAGTATCTCATAGGTGTCTGGG 57.122 43.478 0.00 0.00 0.00 4.45
2542 2678 1.602771 GTGTCTGGGTAGGCCTTCC 59.397 63.158 19.90 19.90 34.45 3.46
2592 2728 9.525409 CTTTTGCATTCCCTTCTTTAGAATATG 57.475 33.333 0.00 0.00 33.01 1.78
2694 2830 5.458041 ACATTGTCTGCATATATTTGGCC 57.542 39.130 0.00 0.00 0.00 5.36
2695 2831 4.281688 ACATTGTCTGCATATATTTGGCCC 59.718 41.667 0.00 0.00 0.00 5.80
2699 2835 2.173519 CTGCATATATTTGGCCCCCTG 58.826 52.381 0.00 0.00 0.00 4.45
2713 2849 2.430694 GCCCCCTGTTGTTATGGAAATC 59.569 50.000 0.00 0.00 0.00 2.17
2722 2858 7.381766 TGTTGTTATGGAAATCTCATCTGTG 57.618 36.000 0.00 0.00 0.00 3.66
2811 2947 3.666797 GGTTTGAAGGTCAAATTAACGCG 59.333 43.478 3.53 3.53 46.55 6.01
2853 2989 9.372369 GTGACAACTAAAGAGCTAGATACAATT 57.628 33.333 0.00 0.00 0.00 2.32
2871 3007 1.781025 TTCGTGCTGCCGGTTTTCTG 61.781 55.000 1.90 0.00 0.00 3.02
2955 3093 4.187694 TCAATCTGCACGCATAATGTGTA 58.812 39.130 0.00 0.00 39.36 2.90
2962 3100 3.849645 GCACGCATAATGTGTATTGCCTC 60.850 47.826 0.00 0.00 39.36 4.70
2964 3102 3.809832 ACGCATAATGTGTATTGCCTCTC 59.190 43.478 0.00 0.00 39.63 3.20
3143 3291 6.201806 CACAAGAGGTAAGCATCAAGTATAGC 59.798 42.308 0.00 0.00 0.00 2.97
3191 3339 9.066892 TCAAAATACTCAGAACTATTGCAAACT 57.933 29.630 1.71 0.00 0.00 2.66
3193 3341 7.986085 AATACTCAGAACTATTGCAAACTGT 57.014 32.000 1.71 0.00 0.00 3.55
3218 3366 9.143631 GTGCAAATAATTTCAATAGAGTTTGCT 57.856 29.630 16.99 0.00 46.05 3.91
3219 3367 9.357652 TGCAAATAATTTCAATAGAGTTTGCTC 57.642 29.630 16.99 0.00 46.05 4.26
3220 3368 8.811378 GCAAATAATTTCAATAGAGTTTGCTCC 58.189 33.333 11.03 0.00 43.88 4.70
3234 3797 4.879545 AGTTTGCTCCGTTTGAGAAAGTTA 59.120 37.500 0.00 0.00 44.42 2.24
3241 3804 6.617953 GCTCCGTTTGAGAAAGTTATACACAC 60.618 42.308 0.00 0.00 44.42 3.82
3246 3809 7.568861 CGTTTGAGAAAGTTATACACACTGACC 60.569 40.741 0.00 0.00 0.00 4.02
3247 3810 6.413783 TGAGAAAGTTATACACACTGACCA 57.586 37.500 0.00 0.00 0.00 4.02
3248 3811 6.220930 TGAGAAAGTTATACACACTGACCAC 58.779 40.000 0.00 0.00 0.00 4.16
3251 3814 5.801531 AAGTTATACACACTGACCACAGA 57.198 39.130 0.00 0.00 46.03 3.41
3252 3815 5.135508 AGTTATACACACTGACCACAGAC 57.864 43.478 0.00 0.00 46.03 3.51
3254 3817 3.667497 ATACACACTGACCACAGACTG 57.333 47.619 0.00 0.00 46.03 3.51
3255 3818 0.179073 ACACACTGACCACAGACTGC 60.179 55.000 1.25 0.00 46.03 4.40
3256 3819 0.105593 CACACTGACCACAGACTGCT 59.894 55.000 1.25 0.00 46.03 4.24
3257 3820 1.341209 CACACTGACCACAGACTGCTA 59.659 52.381 1.25 0.00 46.03 3.49
3258 3821 1.615883 ACACTGACCACAGACTGCTAG 59.384 52.381 1.25 0.00 46.03 3.42
3259 3822 1.067283 CACTGACCACAGACTGCTAGG 60.067 57.143 1.25 5.03 46.03 3.02
3260 3823 0.108424 CTGACCACAGACTGCTAGGC 60.108 60.000 1.25 0.00 46.03 3.93
3261 3824 0.831711 TGACCACAGACTGCTAGGCA 60.832 55.000 1.25 0.00 36.92 4.75
3262 3825 4.610537 CTGACCACAGACTGCTAGGCAG 62.611 59.091 16.61 16.61 46.80 4.85
3278 3841 2.471255 CAGTCTTTGCCCGCTAAGG 58.529 57.895 10.29 0.00 40.63 2.69
3343 3906 2.284190 GCATCTTAGAAGACTGGCCAC 58.716 52.381 0.00 0.00 37.98 5.01
3434 3998 6.621737 TTACAGTAAAGCGTACGATTGAAG 57.378 37.500 20.65 10.81 0.00 3.02
3436 4000 4.384846 ACAGTAAAGCGTACGATTGAAGTG 59.615 41.667 20.65 22.79 0.00 3.16
3518 4083 9.473007 TTGTGATAATGATTATTGGTTTCTCCA 57.527 29.630 0.00 0.00 45.60 3.86
3534 4099 6.094186 GGTTTCTCCACTCATTCATCTTTACC 59.906 42.308 0.00 0.00 35.97 2.85
3536 4101 6.373005 TCTCCACTCATTCATCTTTACCAA 57.627 37.500 0.00 0.00 0.00 3.67
3541 4106 8.106462 TCCACTCATTCATCTTTACCAATAACA 58.894 33.333 0.00 0.00 0.00 2.41
3683 4254 7.246311 CAGAAAACACATCAGGTATGCTTAAG 58.754 38.462 0.00 0.00 39.39 1.85
3712 4283 2.803386 TGCTGAACGTCGCAAAATTCTA 59.197 40.909 4.88 0.00 32.40 2.10
3805 4378 1.745489 GCAAGGCCTGTAACCCTCG 60.745 63.158 5.69 0.00 0.00 4.63
3898 4471 4.276926 GCTTTCTTTATGTCATAGGCCTGG 59.723 45.833 17.99 7.85 0.00 4.45
3918 4491 1.128692 GTAGTGATGGCGTTTGAGCAC 59.871 52.381 0.00 0.00 39.27 4.40
3919 4492 0.534877 AGTGATGGCGTTTGAGCACA 60.535 50.000 0.00 0.00 39.27 4.57
3979 4552 2.661594 CGGCGATCGAGTCATCATAAA 58.338 47.619 21.57 0.00 42.43 1.40
3990 4563 9.838339 ATCGAGTCATCATAAAGGTAAAGAAAT 57.162 29.630 0.00 0.00 0.00 2.17
4005 4578 6.036191 GGTAAAGAAATTCTTCCTCTGCTACG 59.964 42.308 8.86 0.00 35.27 3.51
4030 4608 6.297694 ACATAAGTCGTCGTATCTCCTAAC 57.702 41.667 0.00 0.00 0.00 2.34
4047 4625 0.962356 AACTCCTGGCGGATTTGCTG 60.962 55.000 0.00 0.00 39.01 4.41
4051 4629 2.361104 TGGCGGATTTGCTGACCC 60.361 61.111 0.00 0.00 34.52 4.46
4052 4630 2.044946 GGCGGATTTGCTGACCCT 60.045 61.111 0.00 0.00 34.52 4.34
4053 4631 2.409870 GGCGGATTTGCTGACCCTG 61.410 63.158 0.00 0.00 34.52 4.45
4054 4632 1.377202 GCGGATTTGCTGACCCTGA 60.377 57.895 0.00 0.00 0.00 3.86
4149 4733 0.526662 CTCCTCCGTATACCATCCGC 59.473 60.000 0.00 0.00 0.00 5.54
4189 4773 3.056304 GAGTAGCATCTCCGCAAGAATC 58.944 50.000 0.00 0.00 37.61 2.52
4306 4894 3.114616 CTGGGCAGAAGCGTCACG 61.115 66.667 1.61 0.00 43.41 4.35
4367 4967 2.898729 TCGGAGAGAGCAAATGGATC 57.101 50.000 0.00 0.00 0.00 3.36
4368 4968 1.067669 TCGGAGAGAGCAAATGGATCG 59.932 52.381 0.00 0.00 36.90 3.69
4369 4969 1.871408 CGGAGAGAGCAAATGGATCGG 60.871 57.143 0.00 0.00 36.90 4.18
4370 4970 1.414181 GGAGAGAGCAAATGGATCGGA 59.586 52.381 0.00 0.00 36.90 4.55
4371 4971 2.038295 GGAGAGAGCAAATGGATCGGAT 59.962 50.000 0.00 0.00 36.90 4.18
4372 4972 3.065655 GAGAGAGCAAATGGATCGGATG 58.934 50.000 0.00 0.00 36.90 3.51
4373 4973 2.437281 AGAGAGCAAATGGATCGGATGT 59.563 45.455 0.00 0.00 36.90 3.06
4374 4974 3.643320 AGAGAGCAAATGGATCGGATGTA 59.357 43.478 0.00 0.00 36.90 2.29
4375 4975 3.733337 AGAGCAAATGGATCGGATGTAC 58.267 45.455 0.00 0.00 36.90 2.90
4376 4976 2.808543 GAGCAAATGGATCGGATGTACC 59.191 50.000 0.00 0.00 0.00 3.34
4377 4977 2.439507 AGCAAATGGATCGGATGTACCT 59.560 45.455 0.00 0.00 36.31 3.08
4441 5041 2.428902 CATGTTGCGTTGCGTGGG 60.429 61.111 0.00 0.00 0.00 4.61
4455 5055 4.980805 TGGGTGCTGTCGCCGTTC 62.981 66.667 0.00 0.00 43.79 3.95
4486 5086 3.827876 TCCATTGTTGTGCTGTGATCATT 59.172 39.130 0.00 0.00 0.00 2.57
4502 5102 7.706159 TGTGATCATTCCTTTGAATAAATCGG 58.294 34.615 0.00 0.00 39.20 4.18
4517 5120 2.969628 ATCGGCTCGATCTTCACTTT 57.030 45.000 4.51 0.00 43.45 2.66
4573 5176 6.765403 TCTTACCTGTACAATGTTAGTTGCT 58.235 36.000 0.00 0.00 32.32 3.91
4577 5180 6.707290 ACCTGTACAATGTTAGTTGCTGATA 58.293 36.000 0.00 0.00 32.32 2.15
4580 5183 8.982685 CCTGTACAATGTTAGTTGCTGATATAG 58.017 37.037 0.00 0.00 32.32 1.31
4585 5188 9.751542 ACAATGTTAGTTGCTGATATAGTACTC 57.248 33.333 0.00 0.00 32.32 2.59
4586 5189 9.197694 CAATGTTAGTTGCTGATATAGTACTCC 57.802 37.037 0.00 0.00 0.00 3.85
4587 5190 7.286215 TGTTAGTTGCTGATATAGTACTCCC 57.714 40.000 0.00 0.00 0.00 4.30
4588 5191 6.016527 TGTTAGTTGCTGATATAGTACTCCCG 60.017 42.308 0.00 0.00 0.00 5.14
4589 5192 4.471548 AGTTGCTGATATAGTACTCCCGT 58.528 43.478 0.00 0.00 0.00 5.28
4590 5193 5.628130 AGTTGCTGATATAGTACTCCCGTA 58.372 41.667 0.00 0.00 0.00 4.02
4591 5194 6.246919 AGTTGCTGATATAGTACTCCCGTAT 58.753 40.000 0.00 0.00 0.00 3.06
4601 5204 0.828677 ACTCCCGTATAACACTGGCC 59.171 55.000 0.00 0.00 31.78 5.36
4609 5212 4.521639 CCGTATAACACTGGCCTATACTCA 59.478 45.833 3.32 0.00 0.00 3.41
4634 5238 8.911662 CAATCCGTTTTTAAATACAAGACCTTG 58.088 33.333 8.11 8.11 45.58 3.61
4689 5293 3.990092 ACAGACGCATTTTAGAGTGTGA 58.010 40.909 2.38 0.00 36.38 3.58
4690 5294 4.569943 ACAGACGCATTTTAGAGTGTGAT 58.430 39.130 2.38 0.00 36.38 3.06
4691 5295 5.720202 ACAGACGCATTTTAGAGTGTGATA 58.280 37.500 2.38 0.00 36.38 2.15
4694 5298 4.503910 ACGCATTTTAGAGTGTGATAGCA 58.496 39.130 0.00 0.00 0.00 3.49
4695 5299 4.935205 ACGCATTTTAGAGTGTGATAGCAA 59.065 37.500 0.00 0.00 0.00 3.91
4696 5300 5.411361 ACGCATTTTAGAGTGTGATAGCAAA 59.589 36.000 0.00 0.00 0.00 3.68
4697 5301 6.094048 ACGCATTTTAGAGTGTGATAGCAAAT 59.906 34.615 0.00 0.00 0.00 2.32
4698 5302 6.968904 CGCATTTTAGAGTGTGATAGCAAATT 59.031 34.615 0.00 0.00 0.00 1.82
4705 5309 9.944376 TTAGAGTGTGATAGCAAATTTTAGAGT 57.056 29.630 0.00 0.00 0.00 3.24
4707 5311 7.880195 AGAGTGTGATAGCAAATTTTAGAGTGT 59.120 33.333 0.00 0.00 0.00 3.55
4708 5312 7.810658 AGTGTGATAGCAAATTTTAGAGTGTG 58.189 34.615 0.00 0.00 0.00 3.82
4711 5315 9.665719 TGTGATAGCAAATTTTAGAGTGTGATA 57.334 29.630 0.00 0.00 0.00 2.15
4728 5372 4.065088 GTGATAGCTTTGAGGAACACACA 58.935 43.478 0.00 0.00 0.00 3.72
4730 5374 4.696877 TGATAGCTTTGAGGAACACACATG 59.303 41.667 0.00 0.00 0.00 3.21
4756 5400 2.993899 CGCCGTCATAGTTGAAGAAAGT 59.006 45.455 0.00 0.00 33.71 2.66
4758 5402 3.125316 GCCGTCATAGTTGAAGAAAGTGG 59.875 47.826 0.00 0.00 33.71 4.00
4760 5404 4.315803 CGTCATAGTTGAAGAAAGTGGGT 58.684 43.478 0.00 0.00 33.71 4.51
4779 5423 2.814336 GGTATCGATGGAAAGGAATGCC 59.186 50.000 8.54 0.00 0.00 4.40
4780 5424 1.986882 ATCGATGGAAAGGAATGCCC 58.013 50.000 0.00 0.00 33.31 5.36
4781 5425 0.623194 TCGATGGAAAGGAATGCCCA 59.377 50.000 0.00 0.00 37.41 5.36
4782 5426 1.005332 TCGATGGAAAGGAATGCCCAA 59.995 47.619 0.00 0.00 37.41 4.12
4783 5427 1.824230 CGATGGAAAGGAATGCCCAAA 59.176 47.619 0.00 0.00 37.41 3.28
4784 5428 2.233431 CGATGGAAAGGAATGCCCAAAA 59.767 45.455 0.00 0.00 37.41 2.44
4785 5429 3.676873 CGATGGAAAGGAATGCCCAAAAG 60.677 47.826 0.00 0.00 37.41 2.27
4786 5430 1.347378 TGGAAAGGAATGCCCAAAAGC 59.653 47.619 0.00 0.00 37.41 3.51
4787 5431 1.625315 GGAAAGGAATGCCCAAAAGCT 59.375 47.619 0.00 0.00 37.41 3.74
4788 5432 2.038952 GGAAAGGAATGCCCAAAAGCTT 59.961 45.455 0.00 0.00 37.41 3.74
4789 5433 2.845363 AAGGAATGCCCAAAAGCTTG 57.155 45.000 0.00 0.00 37.41 4.01
4790 5434 2.014010 AGGAATGCCCAAAAGCTTGA 57.986 45.000 0.00 0.00 37.41 3.02
4791 5435 1.620323 AGGAATGCCCAAAAGCTTGAC 59.380 47.619 0.00 0.00 37.41 3.18
4792 5436 1.338105 GGAATGCCCAAAAGCTTGACC 60.338 52.381 0.00 0.00 34.14 4.02
4793 5437 1.344114 GAATGCCCAAAAGCTTGACCA 59.656 47.619 0.00 0.00 34.14 4.02
4794 5438 1.422531 ATGCCCAAAAGCTTGACCAA 58.577 45.000 0.00 0.00 34.14 3.67
4795 5439 0.752054 TGCCCAAAAGCTTGACCAAG 59.248 50.000 0.00 5.44 41.24 3.61
4796 5440 0.752658 GCCCAAAAGCTTGACCAAGT 59.247 50.000 0.00 0.00 40.45 3.16
4797 5441 1.960689 GCCCAAAAGCTTGACCAAGTA 59.039 47.619 0.00 0.00 40.45 2.24
4798 5442 2.364002 GCCCAAAAGCTTGACCAAGTAA 59.636 45.455 0.00 0.00 40.45 2.24
4799 5443 3.181470 GCCCAAAAGCTTGACCAAGTAAA 60.181 43.478 0.00 0.00 40.45 2.01
4800 5444 4.682050 GCCCAAAAGCTTGACCAAGTAAAA 60.682 41.667 0.00 0.00 40.45 1.52
4801 5445 5.610398 CCCAAAAGCTTGACCAAGTAAAAT 58.390 37.500 0.00 0.00 40.45 1.82
4802 5446 6.740122 GCCCAAAAGCTTGACCAAGTAAAATA 60.740 38.462 0.00 0.00 40.45 1.40
4803 5447 7.213678 CCCAAAAGCTTGACCAAGTAAAATAA 58.786 34.615 0.00 0.00 40.45 1.40
4804 5448 7.713073 CCCAAAAGCTTGACCAAGTAAAATAAA 59.287 33.333 0.00 0.00 40.45 1.40
4805 5449 9.271828 CCAAAAGCTTGACCAAGTAAAATAAAT 57.728 29.630 0.00 0.00 40.45 1.40
4807 5451 9.830975 AAAAGCTTGACCAAGTAAAATAAATGT 57.169 25.926 0.00 0.00 40.45 2.71
4808 5452 8.816640 AAGCTTGACCAAGTAAAATAAATGTG 57.183 30.769 0.00 0.00 40.45 3.21
4809 5453 7.378181 AGCTTGACCAAGTAAAATAAATGTGG 58.622 34.615 10.96 0.00 40.45 4.17
4810 5454 6.589907 GCTTGACCAAGTAAAATAAATGTGGG 59.410 38.462 10.96 0.00 40.45 4.61
4811 5455 6.597832 TGACCAAGTAAAATAAATGTGGGG 57.402 37.500 0.00 0.00 0.00 4.96
4812 5456 6.315714 TGACCAAGTAAAATAAATGTGGGGA 58.684 36.000 0.00 0.00 0.00 4.81
4813 5457 6.957020 TGACCAAGTAAAATAAATGTGGGGAT 59.043 34.615 0.00 0.00 0.00 3.85
4814 5458 7.123547 TGACCAAGTAAAATAAATGTGGGGATC 59.876 37.037 0.00 0.00 0.00 3.36
4815 5459 6.096282 ACCAAGTAAAATAAATGTGGGGATCG 59.904 38.462 0.00 0.00 0.00 3.69
4816 5460 6.320164 CCAAGTAAAATAAATGTGGGGATCGA 59.680 38.462 0.00 0.00 0.00 3.59
4817 5461 7.014230 CCAAGTAAAATAAATGTGGGGATCGAT 59.986 37.037 0.00 0.00 0.00 3.59
4818 5462 7.510549 AGTAAAATAAATGTGGGGATCGATG 57.489 36.000 0.54 0.00 0.00 3.84
4819 5463 5.789643 AAAATAAATGTGGGGATCGATGG 57.210 39.130 0.54 0.00 0.00 3.51
4820 5464 4.722526 AATAAATGTGGGGATCGATGGA 57.277 40.909 0.54 0.00 0.00 3.41
4821 5465 4.722526 ATAAATGTGGGGATCGATGGAA 57.277 40.909 0.54 0.00 0.00 3.53
4822 5466 3.380471 AAATGTGGGGATCGATGGAAA 57.620 42.857 0.54 0.00 0.00 3.13
4823 5467 2.645838 ATGTGGGGATCGATGGAAAG 57.354 50.000 0.54 0.00 0.00 2.62
4824 5468 0.546122 TGTGGGGATCGATGGAAAGG 59.454 55.000 0.54 0.00 0.00 3.11
4825 5469 0.837272 GTGGGGATCGATGGAAAGGA 59.163 55.000 0.54 0.00 0.00 3.36
4826 5470 1.211949 GTGGGGATCGATGGAAAGGAA 59.788 52.381 0.54 0.00 0.00 3.36
4827 5471 2.135189 TGGGGATCGATGGAAAGGAAT 58.865 47.619 0.54 0.00 0.00 3.01
4828 5472 2.158623 TGGGGATCGATGGAAAGGAATG 60.159 50.000 0.54 0.00 0.00 2.67
4829 5473 1.882623 GGGATCGATGGAAAGGAATGC 59.117 52.381 0.54 0.00 0.00 3.56
4830 5474 1.882623 GGATCGATGGAAAGGAATGCC 59.117 52.381 0.54 0.00 0.00 4.40
4859 5503 7.170393 AGCTTGACCAAGTAAAATAAATCCC 57.830 36.000 10.96 0.00 40.45 3.85
4865 5509 8.050930 TGACCAAGTAAAATAAATCCCTAGGAC 58.949 37.037 11.48 0.00 32.98 3.85
4868 5512 8.850156 CCAAGTAAAATAAATCCCTAGGACATG 58.150 37.037 11.48 0.00 32.98 3.21
4919 5563 3.374330 CGAAAGCCGTACGAGCTG 58.626 61.111 25.12 13.42 40.49 4.24
4920 5564 2.158959 CGAAAGCCGTACGAGCTGG 61.159 63.158 25.12 16.30 40.49 4.85
4921 5565 1.214589 GAAAGCCGTACGAGCTGGA 59.785 57.895 25.12 0.00 40.49 3.86
4922 5566 1.077089 GAAAGCCGTACGAGCTGGAC 61.077 60.000 25.12 17.24 40.49 4.02
4923 5567 1.533469 AAAGCCGTACGAGCTGGACT 61.533 55.000 25.12 11.71 40.49 3.85
4924 5568 2.202623 GCCGTACGAGCTGGACTG 60.203 66.667 18.76 0.00 0.00 3.51
4925 5569 2.991076 GCCGTACGAGCTGGACTGT 61.991 63.158 18.76 0.00 0.00 3.55
4926 5570 1.585006 CCGTACGAGCTGGACTGTT 59.415 57.895 18.76 0.00 0.00 3.16
4927 5571 0.732880 CCGTACGAGCTGGACTGTTG 60.733 60.000 18.76 0.00 0.00 3.33
4928 5572 1.344942 CGTACGAGCTGGACTGTTGC 61.345 60.000 10.44 0.00 0.00 4.17
4929 5573 1.080772 TACGAGCTGGACTGTTGCG 60.081 57.895 1.44 0.00 0.00 4.85
4930 5574 3.782244 CGAGCTGGACTGTTGCGC 61.782 66.667 0.00 0.00 0.00 6.09
4931 5575 3.426568 GAGCTGGACTGTTGCGCC 61.427 66.667 4.18 0.00 0.00 6.53
4934 5578 3.114616 CTGGACTGTTGCGCCGAG 61.115 66.667 4.18 0.00 0.00 4.63
4935 5579 3.573772 CTGGACTGTTGCGCCGAGA 62.574 63.158 4.18 0.00 0.00 4.04
4936 5580 3.112709 GGACTGTTGCGCCGAGAC 61.113 66.667 4.18 0.00 0.00 3.36
4937 5581 3.470567 GACTGTTGCGCCGAGACG 61.471 66.667 4.18 0.00 0.00 4.18
4938 5582 3.891586 GACTGTTGCGCCGAGACGA 62.892 63.158 4.18 0.00 34.06 4.20
4939 5583 3.470567 CTGTTGCGCCGAGACGAC 61.471 66.667 4.18 0.00 34.06 4.34
4940 5584 4.273257 TGTTGCGCCGAGACGACA 62.273 61.111 4.18 0.00 34.06 4.35
4941 5585 3.470567 GTTGCGCCGAGACGACAG 61.471 66.667 4.18 0.00 34.06 3.51
4942 5586 3.666253 TTGCGCCGAGACGACAGA 61.666 61.111 4.18 0.00 34.06 3.41
4943 5587 3.891586 TTGCGCCGAGACGACAGAC 62.892 63.158 4.18 0.00 34.06 3.51
4944 5588 4.104417 GCGCCGAGACGACAGACT 62.104 66.667 0.00 0.00 34.06 3.24
4945 5589 2.561885 CGCCGAGACGACAGACTT 59.438 61.111 0.00 0.00 34.06 3.01
4946 5590 1.797933 CGCCGAGACGACAGACTTG 60.798 63.158 0.00 0.00 34.06 3.16
4947 5591 1.286260 GCCGAGACGACAGACTTGT 59.714 57.895 0.00 0.00 41.18 3.16
4958 5602 3.498774 ACAGACTTGTCTTTGCATCCT 57.501 42.857 0.00 0.00 29.46 3.24
4959 5603 3.144506 ACAGACTTGTCTTTGCATCCTG 58.855 45.455 0.00 0.00 29.46 3.86
4960 5604 2.095364 CAGACTTGTCTTTGCATCCTGC 60.095 50.000 0.00 0.00 45.29 4.85
4961 5605 2.157738 GACTTGTCTTTGCATCCTGCT 58.842 47.619 0.34 0.00 45.31 4.24
4962 5606 1.884579 ACTTGTCTTTGCATCCTGCTG 59.115 47.619 0.34 0.00 45.31 4.41
4963 5607 0.599558 TTGTCTTTGCATCCTGCTGC 59.400 50.000 0.34 0.00 45.31 5.25
4964 5608 0.251033 TGTCTTTGCATCCTGCTGCT 60.251 50.000 0.00 0.00 45.31 4.24
4965 5609 0.886563 GTCTTTGCATCCTGCTGCTT 59.113 50.000 0.00 0.00 45.31 3.91
4966 5610 0.885879 TCTTTGCATCCTGCTGCTTG 59.114 50.000 0.00 0.00 45.31 4.01
4967 5611 0.736325 CTTTGCATCCTGCTGCTTGC 60.736 55.000 0.00 5.90 45.31 4.01
4968 5612 1.183030 TTTGCATCCTGCTGCTTGCT 61.183 50.000 14.10 0.00 45.31 3.91
4969 5613 1.183030 TTGCATCCTGCTGCTTGCTT 61.183 50.000 14.10 0.00 45.31 3.91
4970 5614 1.139095 GCATCCTGCTGCTTGCTTC 59.861 57.895 0.00 0.00 40.96 3.86
4971 5615 1.592400 GCATCCTGCTGCTTGCTTCA 61.592 55.000 0.00 0.00 40.96 3.02
4972 5616 1.103803 CATCCTGCTGCTTGCTTCAT 58.896 50.000 0.00 0.00 43.37 2.57
4973 5617 1.065701 CATCCTGCTGCTTGCTTCATC 59.934 52.381 0.00 0.00 43.37 2.92
4974 5618 0.327259 TCCTGCTGCTTGCTTCATCT 59.673 50.000 0.00 0.00 43.37 2.90
4975 5619 0.733729 CCTGCTGCTTGCTTCATCTC 59.266 55.000 0.00 0.00 43.37 2.75
4976 5620 1.679336 CCTGCTGCTTGCTTCATCTCT 60.679 52.381 0.00 0.00 43.37 3.10
4977 5621 1.666700 CTGCTGCTTGCTTCATCTCTC 59.333 52.381 0.00 0.00 43.37 3.20
4978 5622 1.278413 TGCTGCTTGCTTCATCTCTCT 59.722 47.619 0.00 0.00 43.37 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.754382 TCCACGGATAGTATTGTAATAACTTTC 57.246 33.333 0.00 0.00 0.00 2.62
6 7 9.706691 CATCCACGGATAGTATTGTAATAACTT 57.293 33.333 0.00 0.00 32.93 2.66
7 8 7.817962 GCATCCACGGATAGTATTGTAATAACT 59.182 37.037 0.00 0.00 32.93 2.24
8 9 7.817962 AGCATCCACGGATAGTATTGTAATAAC 59.182 37.037 0.00 0.00 32.93 1.89
9 10 7.817478 CAGCATCCACGGATAGTATTGTAATAA 59.183 37.037 0.00 0.00 32.93 1.40
10 11 7.320399 CAGCATCCACGGATAGTATTGTAATA 58.680 38.462 0.00 0.00 32.93 0.98
11 12 6.166279 CAGCATCCACGGATAGTATTGTAAT 58.834 40.000 0.00 0.00 32.93 1.89
12 13 5.510690 CCAGCATCCACGGATAGTATTGTAA 60.511 44.000 0.00 0.00 32.93 2.41
13 14 4.021456 CCAGCATCCACGGATAGTATTGTA 60.021 45.833 0.00 0.00 32.93 2.41
14 15 3.244215 CCAGCATCCACGGATAGTATTGT 60.244 47.826 0.00 0.00 32.93 2.71
15 16 3.006859 TCCAGCATCCACGGATAGTATTG 59.993 47.826 0.00 0.00 32.93 1.90
16 17 3.239449 TCCAGCATCCACGGATAGTATT 58.761 45.455 0.00 0.00 32.93 1.89
17 18 2.828520 CTCCAGCATCCACGGATAGTAT 59.171 50.000 0.00 0.00 32.93 2.12
18 19 2.239400 CTCCAGCATCCACGGATAGTA 58.761 52.381 0.00 0.00 32.93 1.82
19 20 1.043816 CTCCAGCATCCACGGATAGT 58.956 55.000 0.00 0.00 32.93 2.12
20 21 0.320247 GCTCCAGCATCCACGGATAG 60.320 60.000 0.00 0.00 41.59 2.08
21 22 0.760567 AGCTCCAGCATCCACGGATA 60.761 55.000 0.48 0.00 45.16 2.59
22 23 2.068821 AGCTCCAGCATCCACGGAT 61.069 57.895 0.48 0.00 45.16 4.18
23 24 2.685017 AGCTCCAGCATCCACGGA 60.685 61.111 0.48 0.00 45.16 4.69
24 25 2.513204 CAGCTCCAGCATCCACGG 60.513 66.667 0.48 0.00 45.16 4.94
25 26 0.957395 AAACAGCTCCAGCATCCACG 60.957 55.000 0.48 0.00 45.16 4.94
26 27 0.807496 GAAACAGCTCCAGCATCCAC 59.193 55.000 0.48 0.00 45.16 4.02
27 28 0.694771 AGAAACAGCTCCAGCATCCA 59.305 50.000 0.48 0.00 45.16 3.41
28 29 1.831580 AAGAAACAGCTCCAGCATCC 58.168 50.000 0.48 0.00 45.16 3.51
29 30 3.930634 AAAAGAAACAGCTCCAGCATC 57.069 42.857 0.48 0.00 45.16 3.91
30 31 3.638160 TGAAAAAGAAACAGCTCCAGCAT 59.362 39.130 0.48 0.00 45.16 3.79
31 32 3.023119 TGAAAAAGAAACAGCTCCAGCA 58.977 40.909 0.48 0.00 45.16 4.41
32 33 3.715628 TGAAAAAGAAACAGCTCCAGC 57.284 42.857 0.00 0.00 42.49 4.85
33 34 5.443185 TGATGAAAAAGAAACAGCTCCAG 57.557 39.130 0.00 0.00 0.00 3.86
34 35 6.409524 AATGATGAAAAAGAAACAGCTCCA 57.590 33.333 0.00 0.00 0.00 3.86
35 36 8.816640 TTTAATGATGAAAAAGAAACAGCTCC 57.183 30.769 0.00 0.00 0.00 4.70
63 64 9.299465 TGCTATTTGAAGATATGCATGGAAATA 57.701 29.630 10.16 7.66 0.00 1.40
64 65 8.185506 TGCTATTTGAAGATATGCATGGAAAT 57.814 30.769 10.16 6.97 0.00 2.17
65 66 7.585579 TGCTATTTGAAGATATGCATGGAAA 57.414 32.000 10.16 0.00 0.00 3.13
66 67 7.770366 ATGCTATTTGAAGATATGCATGGAA 57.230 32.000 10.16 0.00 38.10 3.53
67 68 7.668469 AGAATGCTATTTGAAGATATGCATGGA 59.332 33.333 10.16 0.00 39.24 3.41
68 69 7.827701 AGAATGCTATTTGAAGATATGCATGG 58.172 34.615 10.16 0.00 39.24 3.66
103 104 1.590238 CATTTTGGCGTGCACGAAAAA 59.410 42.857 41.19 37.20 43.02 1.94
104 105 1.203928 CATTTTGGCGTGCACGAAAA 58.796 45.000 41.19 34.21 43.02 2.29
105 106 1.211818 GCATTTTGGCGTGCACGAAA 61.212 50.000 41.19 30.44 43.02 3.46
106 107 1.659954 GCATTTTGGCGTGCACGAA 60.660 52.632 41.19 26.39 43.02 3.85
107 108 2.050533 GCATTTTGGCGTGCACGA 60.051 55.556 41.19 21.58 43.02 4.35
115 116 0.599728 TCACTTTGGCGCATTTTGGC 60.600 50.000 10.83 0.00 0.00 4.52
116 117 1.863267 TTCACTTTGGCGCATTTTGG 58.137 45.000 10.83 0.00 0.00 3.28
117 118 2.606725 TGTTTCACTTTGGCGCATTTTG 59.393 40.909 10.83 0.00 0.00 2.44
118 119 2.898705 TGTTTCACTTTGGCGCATTTT 58.101 38.095 10.83 0.00 0.00 1.82
119 120 2.593346 TGTTTCACTTTGGCGCATTT 57.407 40.000 10.83 0.00 0.00 2.32
120 121 2.593346 TTGTTTCACTTTGGCGCATT 57.407 40.000 10.83 0.00 0.00 3.56
121 122 2.593346 TTTGTTTCACTTTGGCGCAT 57.407 40.000 10.83 0.00 0.00 4.73
122 123 2.593346 ATTTGTTTCACTTTGGCGCA 57.407 40.000 10.83 0.00 0.00 6.09
123 124 3.942539 AAATTTGTTTCACTTTGGCGC 57.057 38.095 0.00 0.00 0.00 6.53
124 125 4.374906 CGCTAAATTTGTTTCACTTTGGCG 60.375 41.667 9.53 9.53 46.56 5.69
125 126 4.506288 ACGCTAAATTTGTTTCACTTTGGC 59.494 37.500 0.00 0.00 33.39 4.52
126 127 6.582437 AACGCTAAATTTGTTTCACTTTGG 57.418 33.333 0.00 0.00 0.00 3.28
133 134 3.120616 GGCCGAAACGCTAAATTTGTTTC 59.879 43.478 16.80 16.80 44.90 2.78
134 135 3.054166 GGCCGAAACGCTAAATTTGTTT 58.946 40.909 0.00 2.92 38.44 2.83
135 136 2.034812 TGGCCGAAACGCTAAATTTGTT 59.965 40.909 0.00 0.00 0.00 2.83
136 137 1.609555 TGGCCGAAACGCTAAATTTGT 59.390 42.857 0.00 0.00 0.00 2.83
137 138 2.339728 TGGCCGAAACGCTAAATTTG 57.660 45.000 0.00 0.00 0.00 2.32
138 139 2.752903 AGATGGCCGAAACGCTAAATTT 59.247 40.909 0.00 0.00 0.00 1.82
139 140 2.354821 GAGATGGCCGAAACGCTAAATT 59.645 45.455 0.00 0.00 0.00 1.82
140 141 1.940613 GAGATGGCCGAAACGCTAAAT 59.059 47.619 0.00 0.00 0.00 1.40
141 142 1.365699 GAGATGGCCGAAACGCTAAA 58.634 50.000 0.00 0.00 0.00 1.85
142 143 0.461339 GGAGATGGCCGAAACGCTAA 60.461 55.000 0.00 0.00 0.00 3.09
143 144 1.143183 GGAGATGGCCGAAACGCTA 59.857 57.895 0.00 0.00 0.00 4.26
144 145 2.125106 GGAGATGGCCGAAACGCT 60.125 61.111 0.00 0.00 0.00 5.07
145 146 0.461339 TAAGGAGATGGCCGAAACGC 60.461 55.000 0.00 0.00 0.00 4.84
146 147 1.933853 CTTAAGGAGATGGCCGAAACG 59.066 52.381 0.00 0.00 0.00 3.60
147 148 1.671328 GCTTAAGGAGATGGCCGAAAC 59.329 52.381 4.29 0.00 0.00 2.78
148 149 1.408266 GGCTTAAGGAGATGGCCGAAA 60.408 52.381 4.29 0.00 33.30 3.46
149 150 0.180406 GGCTTAAGGAGATGGCCGAA 59.820 55.000 4.29 0.00 33.30 4.30
150 151 0.691078 AGGCTTAAGGAGATGGCCGA 60.691 55.000 4.29 0.00 46.44 5.54
151 152 1.048601 TAGGCTTAAGGAGATGGCCG 58.951 55.000 4.29 0.00 46.44 6.13
152 153 2.639839 TGATAGGCTTAAGGAGATGGCC 59.360 50.000 4.29 0.00 42.74 5.36
153 154 4.357918 TTGATAGGCTTAAGGAGATGGC 57.642 45.455 4.29 0.00 0.00 4.40
154 155 6.102663 CGTATTGATAGGCTTAAGGAGATGG 58.897 44.000 4.29 0.00 0.00 3.51
155 156 6.102663 CCGTATTGATAGGCTTAAGGAGATG 58.897 44.000 4.29 0.00 0.00 2.90
156 157 5.187967 CCCGTATTGATAGGCTTAAGGAGAT 59.812 44.000 4.29 0.00 0.00 2.75
157 158 4.527038 CCCGTATTGATAGGCTTAAGGAGA 59.473 45.833 4.29 0.00 0.00 3.71
158 159 4.527038 TCCCGTATTGATAGGCTTAAGGAG 59.473 45.833 4.29 0.00 0.00 3.69
159 160 4.282703 GTCCCGTATTGATAGGCTTAAGGA 59.717 45.833 4.29 0.00 0.00 3.36
160 161 4.562963 GGTCCCGTATTGATAGGCTTAAGG 60.563 50.000 4.29 0.00 0.00 2.69
161 162 4.283722 AGGTCCCGTATTGATAGGCTTAAG 59.716 45.833 0.00 0.00 0.00 1.85
162 163 4.228824 AGGTCCCGTATTGATAGGCTTAA 58.771 43.478 0.00 0.00 0.00 1.85
163 164 3.853207 AGGTCCCGTATTGATAGGCTTA 58.147 45.455 0.00 0.00 0.00 3.09
164 165 2.690840 AGGTCCCGTATTGATAGGCTT 58.309 47.619 0.00 0.00 0.00 4.35
165 166 2.400467 AGGTCCCGTATTGATAGGCT 57.600 50.000 0.00 0.00 0.00 4.58
166 167 3.139077 CAAAGGTCCCGTATTGATAGGC 58.861 50.000 0.00 0.00 0.00 3.93
167 168 3.139077 GCAAAGGTCCCGTATTGATAGG 58.861 50.000 4.45 0.00 0.00 2.57
168 169 3.804036 TGCAAAGGTCCCGTATTGATAG 58.196 45.455 0.00 0.00 0.00 2.08
169 170 3.916359 TGCAAAGGTCCCGTATTGATA 57.084 42.857 0.00 0.00 0.00 2.15
170 171 2.799126 TGCAAAGGTCCCGTATTGAT 57.201 45.000 0.00 0.00 0.00 2.57
171 172 2.639065 GATGCAAAGGTCCCGTATTGA 58.361 47.619 0.00 0.00 0.00 2.57
172 173 1.676006 GGATGCAAAGGTCCCGTATTG 59.324 52.381 0.00 0.00 0.00 1.90
173 174 1.283613 TGGATGCAAAGGTCCCGTATT 59.716 47.619 1.64 0.00 33.45 1.89
174 175 0.916086 TGGATGCAAAGGTCCCGTAT 59.084 50.000 1.64 0.00 33.45 3.06
175 176 0.035820 GTGGATGCAAAGGTCCCGTA 60.036 55.000 1.64 0.00 33.45 4.02
176 177 1.303317 GTGGATGCAAAGGTCCCGT 60.303 57.895 1.64 0.00 33.45 5.28
177 178 1.303236 TGTGGATGCAAAGGTCCCG 60.303 57.895 1.64 0.00 33.45 5.14
178 179 1.250840 GGTGTGGATGCAAAGGTCCC 61.251 60.000 1.64 0.00 33.45 4.46
179 180 1.250840 GGGTGTGGATGCAAAGGTCC 61.251 60.000 0.00 0.00 35.02 4.46
180 181 0.251341 AGGGTGTGGATGCAAAGGTC 60.251 55.000 0.00 0.00 0.00 3.85
181 182 0.540365 CAGGGTGTGGATGCAAAGGT 60.540 55.000 0.00 0.00 0.00 3.50
182 183 0.540365 ACAGGGTGTGGATGCAAAGG 60.540 55.000 0.00 0.00 0.00 3.11
183 184 1.270550 GAACAGGGTGTGGATGCAAAG 59.729 52.381 0.00 0.00 0.00 2.77
184 185 1.133513 AGAACAGGGTGTGGATGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
185 186 0.478072 AGAACAGGGTGTGGATGCAA 59.522 50.000 0.00 0.00 0.00 4.08
186 187 0.478072 AAGAACAGGGTGTGGATGCA 59.522 50.000 0.00 0.00 0.00 3.96
187 188 1.270550 CAAAGAACAGGGTGTGGATGC 59.729 52.381 0.00 0.00 0.00 3.91
188 189 2.586425 ACAAAGAACAGGGTGTGGATG 58.414 47.619 0.00 0.00 0.00 3.51
189 190 4.657814 ATACAAAGAACAGGGTGTGGAT 57.342 40.909 0.00 0.00 0.00 3.41
190 191 4.019681 CCTATACAAAGAACAGGGTGTGGA 60.020 45.833 0.00 0.00 0.00 4.02
191 192 4.019681 TCCTATACAAAGAACAGGGTGTGG 60.020 45.833 0.00 0.00 0.00 4.17
192 193 5.160607 TCCTATACAAAGAACAGGGTGTG 57.839 43.478 0.00 0.00 0.00 3.82
193 194 4.844655 ACTCCTATACAAAGAACAGGGTGT 59.155 41.667 0.00 0.00 0.00 4.16
194 195 5.422214 ACTCCTATACAAAGAACAGGGTG 57.578 43.478 0.00 0.00 0.00 4.61
195 196 6.449830 AAACTCCTATACAAAGAACAGGGT 57.550 37.500 0.00 0.00 0.00 4.34
196 197 9.110502 GAATAAACTCCTATACAAAGAACAGGG 57.889 37.037 0.00 0.00 0.00 4.45
197 198 9.667107 TGAATAAACTCCTATACAAAGAACAGG 57.333 33.333 0.00 0.00 0.00 4.00
221 222 9.862149 TGGAGAGTAGTATATAAAGACATGTGA 57.138 33.333 1.15 0.00 0.00 3.58
235 236 9.742144 ACTATATCGTGAAATGGAGAGTAGTAT 57.258 33.333 0.00 0.00 0.00 2.12
236 237 9.000486 CACTATATCGTGAAATGGAGAGTAGTA 58.000 37.037 1.13 0.00 37.06 1.82
237 238 7.522399 GCACTATATCGTGAAATGGAGAGTAGT 60.522 40.741 11.34 0.00 37.06 2.73
238 239 6.804295 GCACTATATCGTGAAATGGAGAGTAG 59.196 42.308 11.34 0.00 37.06 2.57
239 240 6.567891 CGCACTATATCGTGAAATGGAGAGTA 60.568 42.308 11.34 0.00 37.06 2.59
240 241 5.533482 GCACTATATCGTGAAATGGAGAGT 58.467 41.667 11.34 0.00 37.06 3.24
241 242 4.618912 CGCACTATATCGTGAAATGGAGAG 59.381 45.833 11.34 0.00 37.06 3.20
242 243 4.546570 CGCACTATATCGTGAAATGGAGA 58.453 43.478 11.34 0.00 37.06 3.71
243 244 3.121944 GCGCACTATATCGTGAAATGGAG 59.878 47.826 11.34 0.00 37.06 3.86
244 245 3.057019 GCGCACTATATCGTGAAATGGA 58.943 45.455 11.34 0.00 37.06 3.41
245 246 3.059884 AGCGCACTATATCGTGAAATGG 58.940 45.455 11.47 0.00 37.06 3.16
246 247 3.181549 CGAGCGCACTATATCGTGAAATG 60.182 47.826 11.47 0.00 37.06 2.32
247 248 2.980476 CGAGCGCACTATATCGTGAAAT 59.020 45.455 11.47 0.00 37.06 2.17
248 249 2.381589 CGAGCGCACTATATCGTGAAA 58.618 47.619 11.47 0.00 37.06 2.69
249 250 1.924629 GCGAGCGCACTATATCGTGAA 60.925 52.381 11.47 0.00 41.49 3.18
250 251 0.385598 GCGAGCGCACTATATCGTGA 60.386 55.000 11.47 0.00 41.49 4.35
251 252 1.656586 CGCGAGCGCACTATATCGTG 61.657 60.000 11.47 12.12 42.06 4.35
252 253 1.440518 CGCGAGCGCACTATATCGT 60.441 57.895 11.47 0.00 42.06 3.73
253 254 0.997226 AACGCGAGCGCACTATATCG 60.997 55.000 15.93 10.47 44.19 2.92
254 255 1.129326 AAACGCGAGCGCACTATATC 58.871 50.000 15.93 0.00 44.19 1.63
255 256 1.567504 AAAACGCGAGCGCACTATAT 58.432 45.000 15.93 0.00 44.19 0.86
256 257 1.352114 AAAAACGCGAGCGCACTATA 58.648 45.000 15.93 0.00 44.19 1.31
257 258 2.159181 AAAAACGCGAGCGCACTAT 58.841 47.368 15.93 0.00 44.19 2.12
258 259 3.632700 AAAAACGCGAGCGCACTA 58.367 50.000 15.93 0.00 44.19 2.74
295 296 8.892723 CCGTTCCATAATATAATGTGTATGCAT 58.107 33.333 3.79 3.79 0.00 3.96
296 297 8.097662 TCCGTTCCATAATATAATGTGTATGCA 58.902 33.333 0.00 0.00 0.00 3.96
297 298 8.487313 TCCGTTCCATAATATAATGTGTATGC 57.513 34.615 0.00 0.00 0.00 3.14
298 299 9.098355 CCTCCGTTCCATAATATAATGTGTATG 57.902 37.037 0.00 0.00 0.00 2.39
299 300 8.265055 CCCTCCGTTCCATAATATAATGTGTAT 58.735 37.037 0.00 0.00 0.00 2.29
300 301 7.455323 TCCCTCCGTTCCATAATATAATGTGTA 59.545 37.037 0.00 0.00 0.00 2.90
301 302 6.271391 TCCCTCCGTTCCATAATATAATGTGT 59.729 38.462 0.00 0.00 0.00 3.72
302 303 6.707290 TCCCTCCGTTCCATAATATAATGTG 58.293 40.000 0.00 0.00 0.00 3.21
303 304 6.500751 ACTCCCTCCGTTCCATAATATAATGT 59.499 38.462 0.00 0.00 0.00 2.71
304 305 6.947464 ACTCCCTCCGTTCCATAATATAATG 58.053 40.000 0.00 0.00 0.00 1.90
305 306 7.125356 GGTACTCCCTCCGTTCCATAATATAAT 59.875 40.741 0.00 0.00 0.00 1.28
306 307 6.438425 GGTACTCCCTCCGTTCCATAATATAA 59.562 42.308 0.00 0.00 0.00 0.98
307 308 5.954150 GGTACTCCCTCCGTTCCATAATATA 59.046 44.000 0.00 0.00 0.00 0.86
308 309 4.776308 GGTACTCCCTCCGTTCCATAATAT 59.224 45.833 0.00 0.00 0.00 1.28
309 310 4.154942 GGTACTCCCTCCGTTCCATAATA 58.845 47.826 0.00 0.00 0.00 0.98
310 311 2.970640 GGTACTCCCTCCGTTCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
311 312 2.292389 TGGTACTCCCTCCGTTCCATAA 60.292 50.000 0.00 0.00 28.53 1.90
312 313 1.288633 TGGTACTCCCTCCGTTCCATA 59.711 52.381 0.00 0.00 28.53 2.74
313 314 0.042131 TGGTACTCCCTCCGTTCCAT 59.958 55.000 0.00 0.00 28.53 3.41
314 315 0.042131 ATGGTACTCCCTCCGTTCCA 59.958 55.000 0.00 0.00 36.47 3.53
315 316 0.751452 GATGGTACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 0.00 3.62
316 317 1.777941 AGATGGTACTCCCTCCGTTC 58.222 55.000 0.00 0.00 0.00 3.95
317 318 2.108970 GAAGATGGTACTCCCTCCGTT 58.891 52.381 0.00 0.00 0.00 4.44
318 319 1.288335 AGAAGATGGTACTCCCTCCGT 59.712 52.381 0.00 0.00 0.00 4.69
319 320 1.957877 GAGAAGATGGTACTCCCTCCG 59.042 57.143 0.00 0.00 0.00 4.63
320 321 3.322191 AGAGAAGATGGTACTCCCTCC 57.678 52.381 0.00 0.00 0.00 4.30
321 322 6.311735 AGATAAGAGAAGATGGTACTCCCTC 58.688 44.000 0.00 0.00 0.00 4.30
322 323 6.288096 AGATAAGAGAAGATGGTACTCCCT 57.712 41.667 0.00 0.00 0.00 4.20
323 324 6.987403 AAGATAAGAGAAGATGGTACTCCC 57.013 41.667 0.00 0.00 0.00 4.30
342 343 5.764686 TGCTGTGCGATTCCATAATAAAGAT 59.235 36.000 0.00 0.00 0.00 2.40
434 446 1.599797 GGGTGGACGAACTTGTGGG 60.600 63.158 0.00 0.00 0.00 4.61
450 462 6.128172 TGTGCTATTTGTTTTGTTTTTGTGGG 60.128 34.615 0.00 0.00 0.00 4.61
459 476 2.223688 TGCGCTGTGCTATTTGTTTTGT 60.224 40.909 14.92 0.00 46.63 2.83
460 477 2.392821 TGCGCTGTGCTATTTGTTTTG 58.607 42.857 14.92 0.00 46.63 2.44
480 497 3.370953 GGCAGAGAGAGAGAGAGAGAGTT 60.371 52.174 0.00 0.00 0.00 3.01
485 502 0.463654 GCGGCAGAGAGAGAGAGAGA 60.464 60.000 0.00 0.00 0.00 3.10
486 503 1.447317 GGCGGCAGAGAGAGAGAGAG 61.447 65.000 3.07 0.00 0.00 3.20
487 504 1.453015 GGCGGCAGAGAGAGAGAGA 60.453 63.158 3.07 0.00 0.00 3.10
488 505 2.833533 CGGCGGCAGAGAGAGAGAG 61.834 68.421 10.53 0.00 0.00 3.20
489 506 2.616797 ATCGGCGGCAGAGAGAGAGA 62.617 60.000 10.53 0.00 0.00 3.10
490 507 2.128853 GATCGGCGGCAGAGAGAGAG 62.129 65.000 10.53 0.00 0.00 3.20
491 508 2.124109 ATCGGCGGCAGAGAGAGA 60.124 61.111 10.53 0.00 0.00 3.10
492 509 2.009424 TTGATCGGCGGCAGAGAGAG 62.009 60.000 10.53 0.00 0.00 3.20
493 510 1.604147 TTTGATCGGCGGCAGAGAGA 61.604 55.000 10.53 0.00 0.00 3.10
494 511 1.153568 TTTGATCGGCGGCAGAGAG 60.154 57.895 10.53 0.00 0.00 3.20
495 512 1.447838 GTTTGATCGGCGGCAGAGA 60.448 57.895 10.53 0.00 0.00 3.10
496 513 2.464459 GGTTTGATCGGCGGCAGAG 61.464 63.158 10.53 0.00 0.00 3.35
497 514 2.435938 GGTTTGATCGGCGGCAGA 60.436 61.111 10.53 5.06 0.00 4.26
693 717 2.125512 AGACGGATTCGCTGTGCC 60.126 61.111 0.00 0.00 40.63 5.01
695 719 0.526524 GAGGAGACGGATTCGCTGTG 60.527 60.000 0.00 0.00 40.63 3.66
696 720 1.668101 GGAGGAGACGGATTCGCTGT 61.668 60.000 0.00 0.00 40.63 4.40
697 721 1.066587 GGAGGAGACGGATTCGCTG 59.933 63.158 0.00 0.00 40.63 5.18
700 732 0.752009 TGGAGGAGGAGACGGATTCG 60.752 60.000 0.00 0.00 43.02 3.34
753 802 3.827898 GAGCCGGAGTCGTCCAGG 61.828 72.222 5.05 0.00 44.18 4.45
801 850 3.068691 CGGAGTGGAGCTCGGGAA 61.069 66.667 7.83 0.00 45.03 3.97
927 978 0.468029 GGCTCCTCTCCCTCTCTCTG 60.468 65.000 0.00 0.00 0.00 3.35
942 998 2.048690 GGATCGATCGCCTGGCTC 60.049 66.667 18.81 7.51 0.00 4.70
1125 1182 0.937304 CACTGTATCGAATTGGCCGG 59.063 55.000 0.00 0.00 0.00 6.13
1127 1184 2.325583 TCCACTGTATCGAATTGGCC 57.674 50.000 0.00 0.00 0.00 5.36
1128 1185 4.695217 TTTTCCACTGTATCGAATTGGC 57.305 40.909 0.00 0.00 0.00 4.52
1129 1186 7.312154 TGAATTTTTCCACTGTATCGAATTGG 58.688 34.615 0.00 0.00 0.00 3.16
1130 1187 8.741101 TTGAATTTTTCCACTGTATCGAATTG 57.259 30.769 0.00 0.00 0.00 2.32
1131 1188 9.573133 GATTGAATTTTTCCACTGTATCGAATT 57.427 29.630 0.00 0.00 0.00 2.17
1132 1189 8.190784 GGATTGAATTTTTCCACTGTATCGAAT 58.809 33.333 0.00 0.00 0.00 3.34
1133 1190 7.393234 AGGATTGAATTTTTCCACTGTATCGAA 59.607 33.333 0.00 0.00 31.65 3.71
1135 1192 7.088589 AGGATTGAATTTTTCCACTGTATCG 57.911 36.000 5.41 0.00 31.65 2.92
1136 1193 9.710900 AAAAGGATTGAATTTTTCCACTGTATC 57.289 29.630 5.41 0.00 31.65 2.24
1138 1195 9.541143 GAAAAAGGATTGAATTTTTCCACTGTA 57.459 29.630 10.54 0.00 44.19 2.74
1139 1196 8.437360 GAAAAAGGATTGAATTTTTCCACTGT 57.563 30.769 10.54 0.00 44.19 3.55
1146 1203 7.226523 CCGAACCAGAAAAAGGATTGAATTTTT 59.773 33.333 0.00 0.00 40.37 1.94
1349 1432 2.829458 GACGTCCTCCTCCTCCGG 60.829 72.222 3.51 0.00 0.00 5.14
1464 1549 0.108207 GGATCTAGGAGACGACGGGA 59.892 60.000 0.00 0.00 0.00 5.14
1465 1550 0.179026 TGGATCTAGGAGACGACGGG 60.179 60.000 0.00 0.00 0.00 5.28
1501 1586 4.569180 CCCTGCCCGCCGATGATT 62.569 66.667 0.00 0.00 0.00 2.57
1521 1606 2.631062 AGACCAACAATGTCGTCTACCA 59.369 45.455 12.59 0.00 37.80 3.25
1605 1701 1.539929 CGACAGCAGGGAGGATGAATC 60.540 57.143 0.00 0.00 0.00 2.52
1606 1702 0.467384 CGACAGCAGGGAGGATGAAT 59.533 55.000 0.00 0.00 0.00 2.57
1607 1703 1.900351 CGACAGCAGGGAGGATGAA 59.100 57.895 0.00 0.00 0.00 2.57
1608 1704 2.725312 GCGACAGCAGGGAGGATGA 61.725 63.158 0.00 0.00 44.35 2.92
1609 1705 2.202987 GCGACAGCAGGGAGGATG 60.203 66.667 0.00 0.00 44.35 3.51
1619 1715 0.097674 ATGAAAGCAATCGCGACAGC 59.902 50.000 22.69 22.69 45.49 4.40
1621 1717 0.726827 GGATGAAAGCAATCGCGACA 59.273 50.000 12.93 2.69 45.49 4.35
1622 1718 0.726827 TGGATGAAAGCAATCGCGAC 59.273 50.000 12.93 0.00 45.49 5.19
1639 1735 9.530633 GGTACTAGTACTATTGTTTTCTCATGG 57.469 37.037 27.71 0.00 36.36 3.66
1650 1746 4.277258 CACGCGTGGTACTAGTACTATTG 58.723 47.826 31.15 20.09 36.36 1.90
1655 1751 0.858961 CGCACGCGTGGTACTAGTAC 60.859 60.000 37.47 22.53 33.58 2.73
1658 1754 2.578713 CCGCACGCGTGGTACTAG 60.579 66.667 37.47 13.72 38.06 2.57
1699 1800 3.002759 GCGTTTCATGGAGGAAGATTAGC 59.997 47.826 0.00 0.00 0.00 3.09
1701 1802 3.194861 CGCGTTTCATGGAGGAAGATTA 58.805 45.455 0.00 0.00 0.00 1.75
1702 1803 2.009774 CGCGTTTCATGGAGGAAGATT 58.990 47.619 0.00 0.00 0.00 2.40
1751 1852 2.341318 TCATTCACACGGTCAGTACG 57.659 50.000 0.00 0.00 37.36 3.67
1788 1889 2.969238 CATGATCGCCGTCCTGCC 60.969 66.667 0.00 0.00 0.00 4.85
1789 1890 2.969238 CCATGATCGCCGTCCTGC 60.969 66.667 0.00 0.00 0.00 4.85
1796 1897 3.928779 TCCCTCGCCATGATCGCC 61.929 66.667 0.00 0.00 0.00 5.54
1797 1898 2.663188 GTCCCTCGCCATGATCGC 60.663 66.667 0.00 0.00 0.00 4.58
2007 2108 2.359967 GGTCCTCGGAACTCCCCAG 61.360 68.421 0.00 0.00 0.00 4.45
2063 2164 0.740149 TGTCAGCACTGGCAAAGTTG 59.260 50.000 1.70 0.00 42.89 3.16
2082 2190 8.049117 TCTACCTGAAAAATTGACAGCATATCT 58.951 33.333 0.00 0.00 0.00 1.98
2151 2259 4.193653 GCTCTTTGCTCCGGAGTC 57.806 61.111 31.43 23.14 38.95 3.36
2196 2304 4.012374 TGCATCCTCAATTTCTCACCTTC 58.988 43.478 0.00 0.00 0.00 3.46
2532 2668 2.579410 TCCACAAAAGGAAGGCCTAC 57.421 50.000 5.16 1.49 46.28 3.18
2542 2678 5.106987 GCATAATGCCAAACTTCCACAAAAG 60.107 40.000 0.00 0.00 37.42 2.27
2694 2830 4.599041 TGAGATTTCCATAACAACAGGGG 58.401 43.478 0.00 0.00 0.00 4.79
2695 2831 6.039047 CAGATGAGATTTCCATAACAACAGGG 59.961 42.308 0.00 0.00 0.00 4.45
2699 2835 6.094603 AGCACAGATGAGATTTCCATAACAAC 59.905 38.462 0.00 0.00 0.00 3.32
2713 2849 5.410746 AGTTCAATGTACAAGCACAGATGAG 59.589 40.000 0.00 0.00 32.84 2.90
2722 2858 5.689383 TCCTGAAAGTTCAATGTACAAGC 57.311 39.130 0.00 0.00 36.64 4.01
2811 2947 1.599542 GTCACTTTGTGAGTCCAGCAC 59.400 52.381 0.20 0.00 43.57 4.40
2853 2989 2.110213 AGAAAACCGGCAGCACGA 59.890 55.556 0.00 0.00 35.47 4.35
2871 3007 6.590234 AACCTTCCATGAATAACTGAAACC 57.410 37.500 0.00 0.00 0.00 3.27
3143 3291 2.625314 TGATTCGATCTACCCAGCTCTG 59.375 50.000 0.00 0.00 0.00 3.35
3191 3339 8.924691 GCAAACTCTATTGAAATTATTTGCACA 58.075 29.630 12.16 0.00 46.17 4.57
3218 3366 6.422701 CAGTGTGTATAACTTTCTCAAACGGA 59.577 38.462 0.00 0.00 0.00 4.69
3219 3367 6.422701 TCAGTGTGTATAACTTTCTCAAACGG 59.577 38.462 0.00 0.00 0.00 4.44
3220 3368 7.281484 GTCAGTGTGTATAACTTTCTCAAACG 58.719 38.462 0.00 0.00 0.00 3.60
3234 3797 2.289072 GCAGTCTGTGGTCAGTGTGTAT 60.289 50.000 0.93 0.00 41.91 2.29
3241 3804 0.108424 GCCTAGCAGTCTGTGGTCAG 60.108 60.000 0.93 0.00 42.54 3.51
3260 3823 2.471255 CCTTAGCGGGCAAAGACTG 58.529 57.895 0.00 0.00 0.00 3.51
3269 3832 5.148651 AGTATAGTTTATGCCTTAGCGGG 57.851 43.478 0.00 0.00 44.31 6.13
3270 3833 7.871463 ACTTAAGTATAGTTTATGCCTTAGCGG 59.129 37.037 6.26 0.00 44.31 5.52
3271 3834 8.813643 ACTTAAGTATAGTTTATGCCTTAGCG 57.186 34.615 6.26 0.00 44.31 4.26
3276 3839 9.765795 CTAGCAACTTAAGTATAGTTTATGCCT 57.234 33.333 16.94 9.78 33.73 4.75
3277 3840 9.760077 TCTAGCAACTTAAGTATAGTTTATGCC 57.240 33.333 16.94 4.42 33.73 4.40
3332 3895 1.534235 AGTCTCCGTGGCCAGTCTT 60.534 57.895 5.11 0.00 0.00 3.01
3343 3906 2.732412 TGCTCTGAAAAGAGTCTCCG 57.268 50.000 0.00 0.00 38.16 4.63
3360 3923 3.484407 AGCCATCCTAGATGTCAAATGC 58.516 45.455 4.04 0.00 0.00 3.56
3434 3998 3.056107 TGACACCCTAGTTGTATCAGCAC 60.056 47.826 0.00 0.00 0.00 4.40
3436 4000 3.887621 TGACACCCTAGTTGTATCAGC 57.112 47.619 0.00 0.00 0.00 4.26
3510 4075 6.655003 TGGTAAAGATGAATGAGTGGAGAAAC 59.345 38.462 0.00 0.00 0.00 2.78
3541 4106 9.066892 TCACATCAGTTTCTAAAATGCTTTACT 57.933 29.630 0.00 0.00 34.28 2.24
3572 4143 4.494484 CGTTGTTGACCTGTCATAGATCA 58.506 43.478 0.03 0.00 39.64 2.92
3573 4144 3.307242 GCGTTGTTGACCTGTCATAGATC 59.693 47.826 0.03 0.00 39.64 2.75
3683 4254 2.665185 ACGTTCAGCAGCCGGTTC 60.665 61.111 1.90 0.00 0.00 3.62
3712 4283 2.687914 GCCTTCCAACATAGCCTTCCAT 60.688 50.000 0.00 0.00 0.00 3.41
3805 4378 1.917921 CTTCGCCTGTTCGTATCGC 59.082 57.895 0.00 0.00 0.00 4.58
3898 4471 1.128692 GTGCTCAAACGCCATCACTAC 59.871 52.381 0.00 0.00 0.00 2.73
3918 4491 6.811665 TCGTTACTCTTACAATGTTCCTCATG 59.188 38.462 0.00 0.00 36.81 3.07
3919 4492 6.931838 TCGTTACTCTTACAATGTTCCTCAT 58.068 36.000 0.00 0.00 38.57 2.90
3979 4552 6.133253 AGCAGAGGAAGAATTTCTTTACCT 57.867 37.500 15.69 15.69 36.73 3.08
3990 4563 5.651139 ACTTATGTACGTAGCAGAGGAAGAA 59.349 40.000 0.00 0.00 0.00 2.52
3999 4572 2.672874 ACGACGACTTATGTACGTAGCA 59.327 45.455 0.00 0.00 40.29 3.49
4000 4573 3.310303 ACGACGACTTATGTACGTAGC 57.690 47.619 0.00 0.00 40.29 3.58
4005 4578 5.921004 AGGAGATACGACGACTTATGTAC 57.079 43.478 0.00 0.00 0.00 2.90
4047 4625 4.610945 CAAAATCAAACACACTCAGGGTC 58.389 43.478 0.00 0.00 27.10 4.46
4051 4629 4.923893 TCTGCAAAATCAAACACACTCAG 58.076 39.130 0.00 0.00 0.00 3.35
4052 4630 4.979943 TCTGCAAAATCAAACACACTCA 57.020 36.364 0.00 0.00 0.00 3.41
4053 4631 5.576384 TGTTTCTGCAAAATCAAACACACTC 59.424 36.000 0.00 0.00 34.56 3.51
4054 4632 5.477510 TGTTTCTGCAAAATCAAACACACT 58.522 33.333 0.00 0.00 34.56 3.55
4149 4733 3.566322 ACTCTAAATCCGTCTCATCTCCG 59.434 47.826 0.00 0.00 0.00 4.63
4189 4773 2.158798 GGGAGGAGGGAAAATAGGTTCG 60.159 54.545 0.00 0.00 0.00 3.95
4306 4894 1.097547 CATCTCAATCACCACGCCCC 61.098 60.000 0.00 0.00 0.00 5.80
4367 4967 3.595173 TCATCACACAAAGGTACATCCG 58.405 45.455 0.00 0.00 41.99 4.18
4368 4968 4.393062 CACTCATCACACAAAGGTACATCC 59.607 45.833 0.00 0.00 0.00 3.51
4369 4969 4.997395 ACACTCATCACACAAAGGTACATC 59.003 41.667 0.00 0.00 0.00 3.06
4370 4970 4.973168 ACACTCATCACACAAAGGTACAT 58.027 39.130 0.00 0.00 0.00 2.29
4371 4971 4.415881 ACACTCATCACACAAAGGTACA 57.584 40.909 0.00 0.00 0.00 2.90
4372 4972 7.435068 AATTACACTCATCACACAAAGGTAC 57.565 36.000 0.00 0.00 0.00 3.34
4373 4973 9.214957 CTTAATTACACTCATCACACAAAGGTA 57.785 33.333 0.00 0.00 0.00 3.08
4374 4974 7.308589 GCTTAATTACACTCATCACACAAAGGT 60.309 37.037 0.00 0.00 0.00 3.50
4375 4975 7.023575 GCTTAATTACACTCATCACACAAAGG 58.976 38.462 0.00 0.00 0.00 3.11
4376 4976 7.747799 CAGCTTAATTACACTCATCACACAAAG 59.252 37.037 0.00 0.00 0.00 2.77
4377 4977 7.228507 ACAGCTTAATTACACTCATCACACAAA 59.771 33.333 0.00 0.00 0.00 2.83
4444 5044 0.782384 GTACACAAGAACGGCGACAG 59.218 55.000 16.62 6.82 0.00 3.51
4450 5050 3.399330 ACAATGGAGTACACAAGAACGG 58.601 45.455 0.00 0.00 0.00 4.44
4455 5055 3.565482 AGCACAACAATGGAGTACACAAG 59.435 43.478 0.00 0.00 0.00 3.16
4486 5086 4.131649 TCGAGCCGATTTATTCAAAGGA 57.868 40.909 0.00 0.00 0.00 3.36
4502 5102 1.202009 GCAGCAAAGTGAAGATCGAGC 60.202 52.381 0.00 0.00 0.00 5.03
4559 5162 9.751542 GAGTACTATATCAGCAACTAACATTGT 57.248 33.333 0.00 0.00 31.83 2.71
4582 5185 0.828677 GGCCAGTGTTATACGGGAGT 59.171 55.000 0.00 0.00 46.29 3.85
4583 5186 1.120530 AGGCCAGTGTTATACGGGAG 58.879 55.000 5.01 0.00 46.29 4.30
4585 5188 3.830755 AGTATAGGCCAGTGTTATACGGG 59.169 47.826 5.01 0.00 46.14 5.28
4586 5189 4.521639 TGAGTATAGGCCAGTGTTATACGG 59.478 45.833 5.01 0.00 36.09 4.02
4587 5190 5.700722 TGAGTATAGGCCAGTGTTATACG 57.299 43.478 5.01 0.00 36.09 3.06
4588 5191 7.097834 GGATTGAGTATAGGCCAGTGTTATAC 58.902 42.308 5.01 8.25 32.83 1.47
4589 5192 6.071560 CGGATTGAGTATAGGCCAGTGTTATA 60.072 42.308 5.01 0.00 0.00 0.98
4590 5193 5.279506 CGGATTGAGTATAGGCCAGTGTTAT 60.280 44.000 5.01 0.00 0.00 1.89
4591 5194 4.038763 CGGATTGAGTATAGGCCAGTGTTA 59.961 45.833 5.01 0.00 0.00 2.41
4689 5293 8.970859 AGCTATCACACTCTAAAATTTGCTAT 57.029 30.769 0.00 0.00 0.00 2.97
4690 5294 8.792830 AAGCTATCACACTCTAAAATTTGCTA 57.207 30.769 0.00 0.00 0.00 3.49
4691 5295 7.693969 AAGCTATCACACTCTAAAATTTGCT 57.306 32.000 0.00 0.00 0.00 3.91
4694 5298 8.734386 CCTCAAAGCTATCACACTCTAAAATTT 58.266 33.333 0.00 0.00 0.00 1.82
4695 5299 8.103305 TCCTCAAAGCTATCACACTCTAAAATT 58.897 33.333 0.00 0.00 0.00 1.82
4696 5300 7.624549 TCCTCAAAGCTATCACACTCTAAAAT 58.375 34.615 0.00 0.00 0.00 1.82
4697 5301 7.004555 TCCTCAAAGCTATCACACTCTAAAA 57.995 36.000 0.00 0.00 0.00 1.52
4698 5302 6.605471 TCCTCAAAGCTATCACACTCTAAA 57.395 37.500 0.00 0.00 0.00 1.85
4701 5305 4.284490 TGTTCCTCAAAGCTATCACACTCT 59.716 41.667 0.00 0.00 0.00 3.24
4702 5306 4.390297 GTGTTCCTCAAAGCTATCACACTC 59.610 45.833 0.00 0.00 32.32 3.51
4705 5309 4.065088 GTGTGTTCCTCAAAGCTATCACA 58.935 43.478 0.00 0.00 33.24 3.58
4707 5311 4.350368 TGTGTGTTCCTCAAAGCTATCA 57.650 40.909 0.00 0.00 0.00 2.15
4708 5312 4.437930 GCATGTGTGTTCCTCAAAGCTATC 60.438 45.833 0.00 0.00 0.00 2.08
4711 5315 1.610522 GCATGTGTGTTCCTCAAAGCT 59.389 47.619 0.00 0.00 0.00 3.74
4728 5372 0.391130 AACTATGACGGCGTGTGCAT 60.391 50.000 21.19 17.62 45.35 3.96
4730 5374 1.011968 TCAACTATGACGGCGTGTGC 61.012 55.000 21.19 3.11 41.71 4.57
4756 5400 3.747388 GCATTCCTTTCCATCGATACCCA 60.747 47.826 0.00 0.00 0.00 4.51
4758 5402 2.814336 GGCATTCCTTTCCATCGATACC 59.186 50.000 0.00 0.00 0.00 2.73
4760 5404 2.441375 TGGGCATTCCTTTCCATCGATA 59.559 45.455 0.00 0.00 36.20 2.92
4779 5423 8.655651 TTTATTTTACTTGGTCAAGCTTTTGG 57.344 30.769 10.31 0.00 41.99 3.28
4781 5425 9.830975 ACATTTATTTTACTTGGTCAAGCTTTT 57.169 25.926 10.31 0.00 41.99 2.27
4782 5426 9.260002 CACATTTATTTTACTTGGTCAAGCTTT 57.740 29.630 10.31 0.00 41.99 3.51
4783 5427 7.872483 CCACATTTATTTTACTTGGTCAAGCTT 59.128 33.333 10.31 0.00 41.99 3.74
4784 5428 7.378181 CCACATTTATTTTACTTGGTCAAGCT 58.622 34.615 10.31 1.87 41.99 3.74
4785 5429 6.589907 CCCACATTTATTTTACTTGGTCAAGC 59.410 38.462 10.31 0.00 41.99 4.01
4786 5430 7.039363 TCCCCACATTTATTTTACTTGGTCAAG 60.039 37.037 8.97 8.97 43.79 3.02
4787 5431 6.782988 TCCCCACATTTATTTTACTTGGTCAA 59.217 34.615 0.00 0.00 0.00 3.18
4788 5432 6.315714 TCCCCACATTTATTTTACTTGGTCA 58.684 36.000 0.00 0.00 0.00 4.02
4789 5433 6.844097 TCCCCACATTTATTTTACTTGGTC 57.156 37.500 0.00 0.00 0.00 4.02
4790 5434 6.096282 CGATCCCCACATTTATTTTACTTGGT 59.904 38.462 0.00 0.00 0.00 3.67
4791 5435 6.320164 TCGATCCCCACATTTATTTTACTTGG 59.680 38.462 0.00 0.00 0.00 3.61
4792 5436 7.328277 TCGATCCCCACATTTATTTTACTTG 57.672 36.000 0.00 0.00 0.00 3.16
4793 5437 7.014230 CCATCGATCCCCACATTTATTTTACTT 59.986 37.037 0.00 0.00 0.00 2.24
4794 5438 6.490040 CCATCGATCCCCACATTTATTTTACT 59.510 38.462 0.00 0.00 0.00 2.24
4795 5439 6.488683 TCCATCGATCCCCACATTTATTTTAC 59.511 38.462 0.00 0.00 0.00 2.01
4796 5440 6.606069 TCCATCGATCCCCACATTTATTTTA 58.394 36.000 0.00 0.00 0.00 1.52
4797 5441 5.454062 TCCATCGATCCCCACATTTATTTT 58.546 37.500 0.00 0.00 0.00 1.82
4798 5442 5.060427 TCCATCGATCCCCACATTTATTT 57.940 39.130 0.00 0.00 0.00 1.40
4799 5443 4.722526 TCCATCGATCCCCACATTTATT 57.277 40.909 0.00 0.00 0.00 1.40
4800 5444 4.722526 TTCCATCGATCCCCACATTTAT 57.277 40.909 0.00 0.00 0.00 1.40
4801 5445 4.460263 CTTTCCATCGATCCCCACATTTA 58.540 43.478 0.00 0.00 0.00 1.40
4802 5446 3.290710 CTTTCCATCGATCCCCACATTT 58.709 45.455 0.00 0.00 0.00 2.32
4803 5447 2.423373 CCTTTCCATCGATCCCCACATT 60.423 50.000 0.00 0.00 0.00 2.71
4804 5448 1.143684 CCTTTCCATCGATCCCCACAT 59.856 52.381 0.00 0.00 0.00 3.21
4805 5449 0.546122 CCTTTCCATCGATCCCCACA 59.454 55.000 0.00 0.00 0.00 4.17
4806 5450 0.837272 TCCTTTCCATCGATCCCCAC 59.163 55.000 0.00 0.00 0.00 4.61
4807 5451 1.590591 TTCCTTTCCATCGATCCCCA 58.409 50.000 0.00 0.00 0.00 4.96
4808 5452 2.508526 CATTCCTTTCCATCGATCCCC 58.491 52.381 0.00 0.00 0.00 4.81
4809 5453 1.882623 GCATTCCTTTCCATCGATCCC 59.117 52.381 0.00 0.00 0.00 3.85
4810 5454 1.882623 GGCATTCCTTTCCATCGATCC 59.117 52.381 0.00 0.00 0.00 3.36
4811 5455 1.882623 GGGCATTCCTTTCCATCGATC 59.117 52.381 0.00 0.00 0.00 3.69
4812 5456 1.215173 TGGGCATTCCTTTCCATCGAT 59.785 47.619 0.00 0.00 36.20 3.59
4813 5457 0.623194 TGGGCATTCCTTTCCATCGA 59.377 50.000 0.00 0.00 36.20 3.59
4814 5458 1.473258 TTGGGCATTCCTTTCCATCG 58.527 50.000 0.00 0.00 36.20 3.84
4815 5459 3.865446 CTTTTGGGCATTCCTTTCCATC 58.135 45.455 0.00 0.00 36.20 3.51
4816 5460 2.026915 GCTTTTGGGCATTCCTTTCCAT 60.027 45.455 0.00 0.00 36.20 3.41
4817 5461 1.347378 GCTTTTGGGCATTCCTTTCCA 59.653 47.619 0.00 0.00 36.20 3.53
4818 5462 1.625315 AGCTTTTGGGCATTCCTTTCC 59.375 47.619 0.00 0.00 36.20 3.13
4819 5463 3.069289 CAAGCTTTTGGGCATTCCTTTC 58.931 45.455 0.00 0.00 36.20 2.62
4820 5464 2.705127 TCAAGCTTTTGGGCATTCCTTT 59.295 40.909 0.00 0.00 36.20 3.11
4821 5465 2.037641 GTCAAGCTTTTGGGCATTCCTT 59.962 45.455 0.00 0.00 36.20 3.36
4822 5466 1.620323 GTCAAGCTTTTGGGCATTCCT 59.380 47.619 0.00 0.00 36.20 3.36
4823 5467 1.338105 GGTCAAGCTTTTGGGCATTCC 60.338 52.381 0.00 0.00 34.17 3.01
4824 5468 1.344114 TGGTCAAGCTTTTGGGCATTC 59.656 47.619 0.00 0.00 34.17 2.67
4825 5469 1.422531 TGGTCAAGCTTTTGGGCATT 58.577 45.000 0.00 0.00 34.17 3.56
4826 5470 1.345415 CTTGGTCAAGCTTTTGGGCAT 59.655 47.619 0.00 0.00 34.17 4.40
4827 5471 0.752054 CTTGGTCAAGCTTTTGGGCA 59.248 50.000 0.00 0.00 34.17 5.36
4828 5472 0.752658 ACTTGGTCAAGCTTTTGGGC 59.247 50.000 10.31 0.00 41.99 5.36
4829 5473 4.664150 TTTACTTGGTCAAGCTTTTGGG 57.336 40.909 10.31 0.00 41.99 4.12
4830 5474 8.655651 TTTATTTTACTTGGTCAAGCTTTTGG 57.344 30.769 10.31 0.00 41.99 3.28
4859 5503 5.966742 TCATCTTATCCGTCATGTCCTAG 57.033 43.478 0.00 0.00 0.00 3.02
4865 5509 7.902387 AGATCAAATCATCTTATCCGTCATG 57.098 36.000 0.00 0.00 27.71 3.07
4868 5512 8.091449 AGGTAAGATCAAATCATCTTATCCGTC 58.909 37.037 9.05 0.00 43.45 4.79
4908 5552 0.732880 CAACAGTCCAGCTCGTACGG 60.733 60.000 16.52 7.41 0.00 4.02
4909 5553 1.344942 GCAACAGTCCAGCTCGTACG 61.345 60.000 9.53 9.53 0.00 3.67
4910 5554 1.344942 CGCAACAGTCCAGCTCGTAC 61.345 60.000 0.00 0.00 0.00 3.67
4911 5555 1.080772 CGCAACAGTCCAGCTCGTA 60.081 57.895 0.00 0.00 0.00 3.43
4912 5556 2.356313 CGCAACAGTCCAGCTCGT 60.356 61.111 0.00 0.00 0.00 4.18
4913 5557 3.782244 GCGCAACAGTCCAGCTCG 61.782 66.667 0.30 0.00 0.00 5.03
4914 5558 3.426568 GGCGCAACAGTCCAGCTC 61.427 66.667 10.83 0.00 0.00 4.09
4917 5561 3.114616 CTCGGCGCAACAGTCCAG 61.115 66.667 10.83 0.00 0.00 3.86
4918 5562 3.611674 TCTCGGCGCAACAGTCCA 61.612 61.111 10.83 0.00 0.00 4.02
4919 5563 3.112709 GTCTCGGCGCAACAGTCC 61.113 66.667 10.83 0.00 0.00 3.85
4920 5564 3.470567 CGTCTCGGCGCAACAGTC 61.471 66.667 10.83 0.00 0.00 3.51
4921 5565 3.973516 TCGTCTCGGCGCAACAGT 61.974 61.111 10.83 0.00 0.00 3.55
4922 5566 3.470567 GTCGTCTCGGCGCAACAG 61.471 66.667 10.83 0.67 0.00 3.16
4923 5567 4.273257 TGTCGTCTCGGCGCAACA 62.273 61.111 10.83 0.00 32.50 3.33
4924 5568 3.470567 CTGTCGTCTCGGCGCAAC 61.471 66.667 10.83 1.14 32.50 4.17
4925 5569 3.666253 TCTGTCGTCTCGGCGCAA 61.666 61.111 10.83 0.00 32.50 4.85
4926 5570 4.400109 GTCTGTCGTCTCGGCGCA 62.400 66.667 10.83 0.00 32.50 6.09
4927 5571 3.612371 AAGTCTGTCGTCTCGGCGC 62.612 63.158 0.00 0.00 32.50 6.53
4928 5572 1.797933 CAAGTCTGTCGTCTCGGCG 60.798 63.158 0.00 0.00 32.50 6.46
4929 5573 0.729816 GACAAGTCTGTCGTCTCGGC 60.730 60.000 0.00 0.00 42.54 5.54
4930 5574 3.386379 GACAAGTCTGTCGTCTCGG 57.614 57.895 0.00 0.00 42.54 4.63
4938 5582 3.144506 CAGGATGCAAAGACAAGTCTGT 58.855 45.455 3.08 0.00 40.36 3.41
4939 5583 3.826236 CAGGATGCAAAGACAAGTCTG 57.174 47.619 3.08 0.00 40.36 3.51
4959 5603 2.027003 AGAGAGATGAAGCAAGCAGC 57.973 50.000 0.00 0.00 46.19 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.