Multiple sequence alignment - TraesCS1D01G368500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G368500 chr1D 100.000 3028 0 0 1 3028 447915049 447912022 0.000000e+00 5592.0
1 TraesCS1D01G368500 chr1D 89.552 67 7 0 1880 1946 447913101 447913167 5.380000e-13 86.1
2 TraesCS1D01G368500 chr1A 85.699 1909 133 57 1 1869 543966975 543965167 0.000000e+00 1884.0
3 TraesCS1D01G368500 chr1A 85.125 800 98 11 2229 3028 543964287 543963509 0.000000e+00 798.0
4 TraesCS1D01G368500 chr1A 94.643 56 3 0 1887 1942 47204574 47204519 1.500000e-13 87.9
5 TraesCS1D01G368500 chr1A 94.643 56 3 0 1887 1942 47204519 47204574 1.500000e-13 87.9
6 TraesCS1D01G368500 chr1A 88.889 63 5 1 1880 1942 516690324 516690384 3.240000e-10 76.8
7 TraesCS1D01G368500 chr1B 86.642 1647 125 44 3 1620 613341624 613340044 0.000000e+00 1735.0
8 TraesCS1D01G368500 chr1B 93.007 429 27 3 2218 2645 613337299 613336873 9.220000e-175 623.0
9 TraesCS1D01G368500 chr1B 92.727 385 28 0 2644 3028 613327636 613327252 9.480000e-155 556.0
10 TraesCS1D01G368500 chr1B 94.136 324 16 3 2655 2978 613338428 613338108 9.760000e-135 490.0
11 TraesCS1D01G368500 chr1B 92.059 340 23 3 2218 2554 613338802 613338464 2.730000e-130 475.0
12 TraesCS1D01G368500 chr1B 87.568 185 15 3 2011 2192 613339570 613339391 1.100000e-49 207.0
13 TraesCS1D01G368500 chr1B 94.828 58 1 1 1887 1942 668960745 668960688 4.160000e-14 89.8
14 TraesCS1D01G368500 chr1B 91.803 61 3 2 1882 1942 661577960 661577902 1.930000e-12 84.2
15 TraesCS1D01G368500 chr3B 87.302 126 16 0 2888 3013 647476533 647476658 8.750000e-31 145.0
16 TraesCS1D01G368500 chr3D 87.603 121 15 0 2888 3008 484729382 484729502 1.130000e-29 141.0
17 TraesCS1D01G368500 chr2A 85.606 132 19 0 2894 3025 530676899 530676768 4.070000e-29 139.0
18 TraesCS1D01G368500 chr2D 83.688 141 23 0 2888 3028 391395260 391395400 1.890000e-27 134.0
19 TraesCS1D01G368500 chr2D 96.154 52 1 1 1880 1931 637605902 637605952 1.930000e-12 84.2
20 TraesCS1D01G368500 chr2B 83.704 135 22 0 2894 3028 464604504 464604370 8.810000e-26 128.0
21 TraesCS1D01G368500 chr5B 95.238 63 2 1 1885 1946 280982856 280982918 6.910000e-17 99.0
22 TraesCS1D01G368500 chr5B 94.643 56 3 0 1887 1942 280982913 280982858 1.500000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G368500 chr1D 447912022 447915049 3027 True 5592 5592 100.0000 1 3028 1 chr1D.!!$R1 3027
1 TraesCS1D01G368500 chr1A 543963509 543966975 3466 True 1341 1884 85.4120 1 3028 2 chr1A.!!$R2 3027
2 TraesCS1D01G368500 chr1B 613336873 613341624 4751 True 706 1735 90.6824 3 2978 5 chr1B.!!$R4 2975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 397 0.100325 TATGCAAAGCAAATCGCCCG 59.900 50.0 0.00 0.0 43.62 6.13 F
1290 1343 0.745845 AACCTGCGCCACTGATGATC 60.746 55.0 4.18 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1432 0.038526 ACGAGCAAAGACGTACAGGG 60.039 55.0 0.00 0.0 40.92 4.45 R
2947 3858 0.179032 TGGAAAAGGCTCTTCACGCA 60.179 50.0 2.55 0.0 0.00 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 5.012046 GGTTCCCAAATCCATTTTGTTCTCT 59.988 40.000 0.00 0.00 42.68 3.10
64 65 4.021192 TCCCAAATCCATTTTGTTCTCTGC 60.021 41.667 0.00 0.00 42.68 4.26
65 66 3.922240 CCAAATCCATTTTGTTCTCTGCG 59.078 43.478 0.00 0.00 42.68 5.18
66 67 4.549458 CAAATCCATTTTGTTCTCTGCGT 58.451 39.130 0.00 0.00 39.93 5.24
67 68 5.335583 CCAAATCCATTTTGTTCTCTGCGTA 60.336 40.000 0.00 0.00 42.68 4.42
68 69 4.946784 ATCCATTTTGTTCTCTGCGTAC 57.053 40.909 0.00 0.00 0.00 3.67
99 116 3.044986 CAATCAGTTCACGGCAACAAAG 58.955 45.455 2.06 0.00 0.00 2.77
100 117 0.380378 TCAGTTCACGGCAACAAAGC 59.620 50.000 2.06 0.00 0.00 3.51
101 118 0.381801 CAGTTCACGGCAACAAAGCT 59.618 50.000 2.06 0.00 34.17 3.74
102 119 0.381801 AGTTCACGGCAACAAAGCTG 59.618 50.000 0.00 0.00 46.31 4.24
103 120 1.065600 TTCACGGCAACAAAGCTGC 59.934 52.632 0.00 0.00 44.76 5.25
104 121 2.660553 TTCACGGCAACAAAGCTGCG 62.661 55.000 0.00 0.00 44.76 5.18
105 122 2.899838 ACGGCAACAAAGCTGCGA 60.900 55.556 0.00 0.00 44.76 5.10
106 123 2.260869 ACGGCAACAAAGCTGCGAT 61.261 52.632 0.00 0.00 44.76 4.58
107 124 0.953471 ACGGCAACAAAGCTGCGATA 60.953 50.000 0.00 0.00 44.76 2.92
108 125 0.167908 CGGCAACAAAGCTGCGATAA 59.832 50.000 0.00 0.00 40.88 1.75
109 126 1.202177 CGGCAACAAAGCTGCGATAAT 60.202 47.619 0.00 0.00 40.88 1.28
110 127 2.187707 GGCAACAAAGCTGCGATAATG 58.812 47.619 0.00 0.00 40.88 1.90
111 128 2.159393 GGCAACAAAGCTGCGATAATGA 60.159 45.455 0.00 0.00 40.88 2.57
112 129 3.500982 GCAACAAAGCTGCGATAATGAA 58.499 40.909 0.00 0.00 0.00 2.57
113 130 3.301642 GCAACAAAGCTGCGATAATGAAC 59.698 43.478 0.00 0.00 0.00 3.18
114 131 4.475028 CAACAAAGCTGCGATAATGAACA 58.525 39.130 0.00 0.00 0.00 3.18
126 143 4.496341 CGATAATGAACAACTGTGCCCATC 60.496 45.833 0.00 0.00 0.00 3.51
148 165 3.251729 CAGGATCCAACTGCCAATAATCG 59.748 47.826 15.82 0.00 0.00 3.34
149 166 2.554032 GGATCCAACTGCCAATAATCGG 59.446 50.000 6.95 0.00 0.00 4.18
151 168 3.080300 TCCAACTGCCAATAATCGGTT 57.920 42.857 0.00 0.00 32.44 4.44
152 169 3.013921 TCCAACTGCCAATAATCGGTTC 58.986 45.455 0.00 0.00 30.00 3.62
153 170 3.016736 CCAACTGCCAATAATCGGTTCT 58.983 45.455 0.00 0.00 30.00 3.01
154 171 4.080807 TCCAACTGCCAATAATCGGTTCTA 60.081 41.667 0.00 0.00 30.00 2.10
155 172 4.035208 CCAACTGCCAATAATCGGTTCTAC 59.965 45.833 0.00 0.00 30.00 2.59
156 173 3.805207 ACTGCCAATAATCGGTTCTACC 58.195 45.455 0.00 0.00 34.05 3.18
157 174 3.199071 ACTGCCAATAATCGGTTCTACCA 59.801 43.478 0.00 0.00 38.47 3.25
158 175 3.804036 TGCCAATAATCGGTTCTACCAG 58.196 45.455 0.00 0.00 38.47 4.00
159 176 3.452990 TGCCAATAATCGGTTCTACCAGA 59.547 43.478 0.00 0.00 38.47 3.86
215 234 1.428448 CGAATCCGTTGTCTGAAGCA 58.572 50.000 0.00 0.00 0.00 3.91
274 293 2.227388 CTCACACCTCATTTCTGTTGCC 59.773 50.000 0.00 0.00 0.00 4.52
293 312 2.618709 GCCAGTGTTAACAGCTCAAACT 59.381 45.455 8.98 0.00 0.00 2.66
301 320 1.055040 ACAGCTCAAACTGGCTCTCT 58.945 50.000 0.00 0.00 42.21 3.10
311 330 4.564782 AACTGGCTCTCTCATTCATCAA 57.435 40.909 0.00 0.00 0.00 2.57
312 331 4.564782 ACTGGCTCTCTCATTCATCAAA 57.435 40.909 0.00 0.00 0.00 2.69
313 332 5.113446 ACTGGCTCTCTCATTCATCAAAT 57.887 39.130 0.00 0.00 0.00 2.32
314 333 5.124645 ACTGGCTCTCTCATTCATCAAATC 58.875 41.667 0.00 0.00 0.00 2.17
315 334 5.106876 TGGCTCTCTCATTCATCAAATCA 57.893 39.130 0.00 0.00 0.00 2.57
316 335 5.691896 TGGCTCTCTCATTCATCAAATCAT 58.308 37.500 0.00 0.00 0.00 2.45
317 336 5.763698 TGGCTCTCTCATTCATCAAATCATC 59.236 40.000 0.00 0.00 0.00 2.92
318 337 5.763698 GGCTCTCTCATTCATCAAATCATCA 59.236 40.000 0.00 0.00 0.00 3.07
319 338 6.293516 GGCTCTCTCATTCATCAAATCATCAC 60.294 42.308 0.00 0.00 0.00 3.06
349 368 3.444388 ACTTTCTCGAGATAGGCTTTCGT 59.556 43.478 28.92 10.70 35.90 3.85
363 382 2.349532 GCTTTCGTCCCGCTTTATATGC 60.350 50.000 0.00 0.00 0.00 3.14
378 397 0.100325 TATGCAAAGCAAATCGCCCG 59.900 50.000 0.00 0.00 43.62 6.13
379 398 1.876497 ATGCAAAGCAAATCGCCCGT 61.876 50.000 0.00 0.00 43.62 5.28
382 401 2.686816 AAAGCAAATCGCCCGTCCG 61.687 57.895 0.00 0.00 44.04 4.79
417 441 5.179555 AGAATTAGTTCTTTGAGTGGTTCGC 59.820 40.000 0.00 0.00 41.92 4.70
433 457 4.559386 GCTCAACCGCGCGATTCG 62.559 66.667 34.63 17.54 42.12 3.34
467 494 5.112686 GTCTTATCAGAGTAACCTGCCTTG 58.887 45.833 0.00 0.00 34.28 3.61
477 504 4.702131 AGTAACCTGCCTTGATTTCATCAC 59.298 41.667 0.00 0.00 39.39 3.06
478 505 2.450476 ACCTGCCTTGATTTCATCACC 58.550 47.619 0.00 0.00 39.39 4.02
505 532 3.020984 GGTAGAAGGGAGTGAGAGACAG 58.979 54.545 0.00 0.00 0.00 3.51
548 581 2.328289 GCAGCAGAGATGCATGCG 59.672 61.111 14.09 0.64 44.90 4.73
565 601 0.938008 GCGTTGGCCTAGCTAATCAC 59.062 55.000 3.32 0.00 30.69 3.06
623 659 7.015098 TGTGCCAAAAGGAAATTAAGATGAGAA 59.985 33.333 0.00 0.00 0.00 2.87
668 704 0.814457 TTTGACAGGTGTGTTGGTGC 59.186 50.000 0.00 0.00 36.88 5.01
725 761 1.395635 TGCATTAGCTCCTGCAATGG 58.604 50.000 17.96 0.00 44.87 3.16
739 775 2.029110 TGCAATGGCTAAAAAGGAGCAC 60.029 45.455 0.00 0.00 41.98 4.40
749 785 6.036470 GCTAAAAAGGAGCACAAATCATACC 58.964 40.000 0.00 0.00 39.84 2.73
753 794 1.331756 GGAGCACAAATCATACCGCTG 59.668 52.381 0.00 0.00 0.00 5.18
786 829 4.153958 TGCTTTTTAAGTGTGCCATACG 57.846 40.909 0.00 0.00 0.00 3.06
839 886 2.605338 CCATGTGCGTCCTTCACAAAAG 60.605 50.000 0.00 0.00 46.07 2.27
857 905 4.681074 AAAGTAGCAGCCTCCTATCTTC 57.319 45.455 0.00 0.00 0.00 2.87
893 942 3.450817 AGGCCACAAACCAATTATTAGCC 59.549 43.478 5.01 0.00 36.92 3.93
904 953 2.276732 TTATTAGCCAGCCATGAGCC 57.723 50.000 0.00 0.00 45.47 4.70
910 959 4.478371 CAGCCATGAGCCGCCTGA 62.478 66.667 0.00 0.00 45.47 3.86
911 960 4.172512 AGCCATGAGCCGCCTGAG 62.173 66.667 0.00 0.00 45.47 3.35
914 963 2.052779 CCATGAGCCGCCTGAGATA 58.947 57.895 0.00 0.00 0.00 1.98
1290 1343 0.745845 AACCTGCGCCACTGATGATC 60.746 55.000 4.18 0.00 0.00 2.92
1291 1344 2.242572 CCTGCGCCACTGATGATCG 61.243 63.158 4.18 0.00 0.00 3.69
1292 1345 2.202919 TGCGCCACTGATGATCGG 60.203 61.111 4.18 0.00 0.00 4.18
1293 1346 2.106938 GCGCCACTGATGATCGGA 59.893 61.111 8.51 0.00 0.00 4.55
1294 1347 2.240500 GCGCCACTGATGATCGGAC 61.241 63.158 8.51 0.00 0.00 4.79
1295 1348 1.946156 CGCCACTGATGATCGGACG 60.946 63.158 8.51 5.12 0.00 4.79
1299 1354 2.616960 CCACTGATGATCGGACGAAAA 58.383 47.619 8.51 0.00 0.00 2.29
1303 1358 3.133003 ACTGATGATCGGACGAAAAGGAT 59.867 43.478 8.51 0.00 0.00 3.24
1314 1369 1.406180 CGAAAAGGATCCATGCATGCA 59.594 47.619 25.04 25.04 0.00 3.96
1315 1370 2.035449 CGAAAAGGATCCATGCATGCAT 59.965 45.455 27.46 27.46 37.08 3.96
1375 1430 1.755161 CGGATATCGGTCTCGTTGTG 58.245 55.000 2.20 0.00 37.69 3.33
1377 1432 2.728922 GGATATCGGTCTCGTTGTGTC 58.271 52.381 0.00 0.00 37.69 3.67
1379 1434 0.813184 TATCGGTCTCGTTGTGTCCC 59.187 55.000 0.00 0.00 37.69 4.46
1500 1559 6.183360 GGGTACATGCCAGCATAATATTCATC 60.183 42.308 4.52 0.00 34.91 2.92
1501 1560 5.556355 ACATGCCAGCATAATATTCATCG 57.444 39.130 4.52 0.00 34.91 3.84
1502 1561 5.005740 ACATGCCAGCATAATATTCATCGT 58.994 37.500 4.52 0.00 34.91 3.73
1564 1628 5.714047 CTCCCTTTCACTTTATTTCCTTGC 58.286 41.667 0.00 0.00 0.00 4.01
1596 1660 4.498009 CGTATTTGCACCCTCAATCAATCC 60.498 45.833 0.00 0.00 0.00 3.01
1602 1821 3.391296 GCACCCTCAATCAATCCTAGGTA 59.609 47.826 9.08 0.00 0.00 3.08
1618 1837 4.966805 CCTAGGTAGGTTCAGTTGGGATAA 59.033 45.833 0.00 0.00 38.69 1.75
1619 1838 5.607171 CCTAGGTAGGTTCAGTTGGGATAAT 59.393 44.000 0.00 0.00 38.69 1.28
1622 1843 5.131142 AGGTAGGTTCAGTTGGGATAATGAG 59.869 44.000 0.00 0.00 0.00 2.90
1627 1849 5.710099 GGTTCAGTTGGGATAATGAGTTGAA 59.290 40.000 0.00 0.00 0.00 2.69
1636 1858 5.221322 GGGATAATGAGTTGAAAGGGAATGC 60.221 44.000 0.00 0.00 0.00 3.56
1674 1896 5.473039 AGCTAAAGGAAACAATGATTGCAC 58.527 37.500 4.84 0.00 0.00 4.57
1675 1897 4.627035 GCTAAAGGAAACAATGATTGCACC 59.373 41.667 4.84 6.44 0.00 5.01
1698 1920 3.231160 CAAACGGGATAAAAAGCGTGAC 58.769 45.455 0.00 0.00 0.00 3.67
1832 2063 5.371526 TCAACTCATCCCTGAATTATCTGC 58.628 41.667 0.00 0.00 0.00 4.26
1872 2115 8.276060 TGTTGTTCGAAAAACAAATACATAGC 57.724 30.769 27.58 3.57 41.23 2.97
1888 2131 3.905060 GCGCACGCTAGCTAGTAC 58.095 61.111 21.62 5.51 38.26 2.73
1890 2133 0.657951 GCGCACGCTAGCTAGTACTC 60.658 60.000 21.62 8.51 38.26 2.59
1891 2134 0.041135 CGCACGCTAGCTAGTACTCC 60.041 60.000 21.62 4.06 0.00 3.85
1892 2135 0.311477 GCACGCTAGCTAGTACTCCC 59.689 60.000 21.62 3.35 0.00 4.30
1894 2137 1.874872 CACGCTAGCTAGTACTCCCTC 59.125 57.143 21.62 1.92 0.00 4.30
1895 2138 1.202794 ACGCTAGCTAGTACTCCCTCC 60.203 57.143 21.62 1.21 0.00 4.30
1896 2139 1.525941 GCTAGCTAGTACTCCCTCCG 58.474 60.000 21.62 0.00 0.00 4.63
1897 2140 1.202794 GCTAGCTAGTACTCCCTCCGT 60.203 57.143 21.62 0.00 0.00 4.69
1898 2141 2.038295 GCTAGCTAGTACTCCCTCCGTA 59.962 54.545 21.62 0.00 0.00 4.02
1900 2143 3.659183 AGCTAGTACTCCCTCCGTAAA 57.341 47.619 0.00 0.00 0.00 2.01
1901 2144 3.553904 AGCTAGTACTCCCTCCGTAAAG 58.446 50.000 0.00 0.00 0.00 1.85
1903 2146 3.950395 GCTAGTACTCCCTCCGTAAAGAA 59.050 47.826 0.00 0.00 0.00 2.52
1904 2147 4.400567 GCTAGTACTCCCTCCGTAAAGAAA 59.599 45.833 0.00 0.00 0.00 2.52
1905 2148 5.068855 GCTAGTACTCCCTCCGTAAAGAAAT 59.931 44.000 0.00 0.00 0.00 2.17
1906 2149 6.264067 GCTAGTACTCCCTCCGTAAAGAAATA 59.736 42.308 0.00 0.00 0.00 1.40
1908 2151 9.512588 CTAGTACTCCCTCCGTAAAGAAATATA 57.487 37.037 0.00 0.00 0.00 0.86
1909 2152 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1910 2153 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1911 2154 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1913 2156 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1914 2157 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
1915 2158 5.118817 CCTCCGTAAAGAAATATAAGAGCGC 59.881 44.000 0.00 0.00 0.00 5.92
1916 2159 5.839621 TCCGTAAAGAAATATAAGAGCGCT 58.160 37.500 11.27 11.27 0.00 5.92
1917 2160 5.919141 TCCGTAAAGAAATATAAGAGCGCTC 59.081 40.000 30.01 30.01 0.00 5.03
1918 2161 5.921408 CCGTAAAGAAATATAAGAGCGCTCT 59.079 40.000 33.83 33.83 42.75 4.09
1933 2176 7.938563 AGAGCGCTCTTATATTTCTTTACAG 57.061 36.000 33.83 0.00 36.31 2.74
1934 2177 7.493367 AGAGCGCTCTTATATTTCTTTACAGT 58.507 34.615 33.83 5.67 36.31 3.55
1935 2178 7.436673 AGAGCGCTCTTATATTTCTTTACAGTG 59.563 37.037 33.83 0.00 36.31 3.66
1936 2179 6.480320 AGCGCTCTTATATTTCTTTACAGTGG 59.520 38.462 2.64 0.00 0.00 4.00
1937 2180 6.292919 GCGCTCTTATATTTCTTTACAGTGGG 60.293 42.308 0.00 0.00 0.00 4.61
1938 2181 6.984474 CGCTCTTATATTTCTTTACAGTGGGA 59.016 38.462 0.00 0.00 0.00 4.37
1939 2182 7.169982 CGCTCTTATATTTCTTTACAGTGGGAG 59.830 40.741 0.00 0.00 0.00 4.30
1955 2198 4.402793 AGTGGGAGTAGTAGTTATGCACAG 59.597 45.833 0.00 0.00 0.00 3.66
2017 2260 3.731867 GCAGAAAATCCCTACACATTGCG 60.732 47.826 0.00 0.00 0.00 4.85
2090 2336 6.713903 ACTAATATGGCAGTCATTTCTGATGG 59.286 38.462 0.00 0.00 37.61 3.51
2099 2345 3.099141 TCATTTCTGATGGAAAAGGCCC 58.901 45.455 0.00 0.00 45.56 5.80
2103 2349 3.147595 GATGGAAAAGGCCCGGGC 61.148 66.667 38.57 38.57 41.06 6.13
2123 2369 4.002982 GGCAATCCCTCATTTTCAAAACC 58.997 43.478 0.00 0.00 0.00 3.27
2126 2372 5.530543 GCAATCCCTCATTTTCAAAACCAAA 59.469 36.000 0.00 0.00 0.00 3.28
2195 2454 0.242017 GTTGACCAAGATGCAGCACC 59.758 55.000 4.07 0.00 0.00 5.01
2197 2456 0.890542 TGACCAAGATGCAGCACCAC 60.891 55.000 4.07 0.00 0.00 4.16
2205 2464 4.120331 GCAGCACCACGCCATTCC 62.120 66.667 0.00 0.00 44.04 3.01
2351 3261 1.336755 AGGTTTGGTTTGACGTCATGC 59.663 47.619 20.80 14.61 0.00 4.06
2404 3314 1.028330 TACGCCACTTCCTCGTCGAT 61.028 55.000 0.00 0.00 37.61 3.59
2475 3386 6.116806 TGTAACTGTTCATGTACAACTTGGT 58.883 36.000 6.62 0.00 0.00 3.67
2531 3442 7.008266 GTGTTTTTAGCATTATGGTGATTCGTG 59.992 37.037 7.20 0.00 0.00 4.35
2554 3465 8.926710 CGTGGTCTGATATATCTTATTTTCCAC 58.073 37.037 13.79 17.00 36.68 4.02
2581 3492 2.030007 GGCAACATGCTTCTTGCTACAA 60.030 45.455 15.76 0.00 44.28 2.41
2584 3495 4.795278 GCAACATGCTTCTTGCTACAATAC 59.205 41.667 10.59 0.00 40.96 1.89
2585 3496 5.619757 GCAACATGCTTCTTGCTACAATACA 60.620 40.000 10.59 0.00 40.96 2.29
2586 3497 5.551760 ACATGCTTCTTGCTACAATACAC 57.448 39.130 0.00 0.00 43.37 2.90
2588 3499 6.406370 ACATGCTTCTTGCTACAATACACTA 58.594 36.000 0.00 0.00 43.37 2.74
2589 3500 6.878923 ACATGCTTCTTGCTACAATACACTAA 59.121 34.615 0.00 0.00 43.37 2.24
2591 3502 7.737972 TGCTTCTTGCTACAATACACTAAAA 57.262 32.000 0.00 0.00 43.37 1.52
2592 3503 8.335532 TGCTTCTTGCTACAATACACTAAAAT 57.664 30.769 0.00 0.00 43.37 1.82
2593 3504 9.443323 TGCTTCTTGCTACAATACACTAAAATA 57.557 29.630 0.00 0.00 43.37 1.40
2594 3505 9.704098 GCTTCTTGCTACAATACACTAAAATAC 57.296 33.333 0.00 0.00 38.95 1.89
2598 3509 9.973246 CTTGCTACAATACACTAAAATACACTG 57.027 33.333 0.00 0.00 0.00 3.66
2690 3601 5.276461 ACAACCCAAAGAAAAGGAACATC 57.724 39.130 0.00 0.00 0.00 3.06
2726 3637 9.494271 TCCAATATCCTTGAGAGAATTTATTCG 57.506 33.333 0.00 0.00 41.56 3.34
2854 3765 4.735822 TGTTTACAAGAAAAATTGCGGTCG 59.264 37.500 0.00 0.00 33.28 4.79
2869 3780 1.641577 GGTCGATGCAGACTACCAAC 58.358 55.000 10.87 0.00 40.76 3.77
2905 3816 3.436704 ACTGTCAACAATATCAACGCCAG 59.563 43.478 0.00 0.00 0.00 4.85
2913 3824 0.179111 TATCAACGCCAGCTTCGAGG 60.179 55.000 11.61 0.00 0.00 4.63
2947 3858 2.143925 GTTCGTTGGCAAGTAGCTCTT 58.856 47.619 0.00 0.00 44.79 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 0.462375 ATTGGCCAGATACGTACGCA 59.538 50.000 16.72 1.76 0.00 5.24
64 65 2.223735 ACTGATTGGCCAGATACGTACG 60.224 50.000 15.01 15.01 37.59 3.67
65 66 3.454371 ACTGATTGGCCAGATACGTAC 57.546 47.619 5.11 0.00 37.59 3.67
66 67 3.449377 TGAACTGATTGGCCAGATACGTA 59.551 43.478 5.11 0.00 37.59 3.57
67 68 2.236146 TGAACTGATTGGCCAGATACGT 59.764 45.455 5.11 0.00 37.59 3.57
68 69 2.609459 GTGAACTGATTGGCCAGATACG 59.391 50.000 5.11 0.00 37.59 3.06
99 116 3.419915 CACAGTTGTTCATTATCGCAGC 58.580 45.455 0.00 0.00 0.00 5.25
100 117 3.419915 GCACAGTTGTTCATTATCGCAG 58.580 45.455 0.00 0.00 0.00 5.18
101 118 2.161410 GGCACAGTTGTTCATTATCGCA 59.839 45.455 0.00 0.00 0.00 5.10
102 119 2.477863 GGGCACAGTTGTTCATTATCGC 60.478 50.000 0.00 0.00 0.00 4.58
103 120 2.746904 TGGGCACAGTTGTTCATTATCG 59.253 45.455 0.00 0.00 0.00 2.92
104 121 4.398988 TGATGGGCACAGTTGTTCATTATC 59.601 41.667 0.00 0.00 0.00 1.75
105 122 4.343231 TGATGGGCACAGTTGTTCATTAT 58.657 39.130 0.00 0.00 0.00 1.28
106 123 3.758023 CTGATGGGCACAGTTGTTCATTA 59.242 43.478 0.00 0.00 0.00 1.90
107 124 2.559668 CTGATGGGCACAGTTGTTCATT 59.440 45.455 0.00 0.00 0.00 2.57
108 125 2.165167 CTGATGGGCACAGTTGTTCAT 58.835 47.619 0.00 0.00 0.00 2.57
109 126 1.608055 CTGATGGGCACAGTTGTTCA 58.392 50.000 0.00 0.00 0.00 3.18
110 127 0.883833 CCTGATGGGCACAGTTGTTC 59.116 55.000 0.00 0.00 34.04 3.18
111 128 0.478072 TCCTGATGGGCACAGTTGTT 59.522 50.000 0.00 0.00 34.04 2.83
112 129 0.700564 ATCCTGATGGGCACAGTTGT 59.299 50.000 0.00 0.00 34.04 3.32
113 130 1.386533 GATCCTGATGGGCACAGTTG 58.613 55.000 0.00 0.00 34.04 3.16
114 131 0.257039 GGATCCTGATGGGCACAGTT 59.743 55.000 3.84 0.00 34.04 3.16
126 143 3.251729 CGATTATTGGCAGTTGGATCCTG 59.748 47.826 14.23 4.03 0.00 3.86
148 165 3.613432 CGTTGTGGTAGTCTGGTAGAACC 60.613 52.174 0.00 0.00 39.22 3.62
149 166 3.254166 TCGTTGTGGTAGTCTGGTAGAAC 59.746 47.826 0.00 0.00 0.00 3.01
151 168 2.816087 GTCGTTGTGGTAGTCTGGTAGA 59.184 50.000 0.00 0.00 0.00 2.59
152 169 2.555325 TGTCGTTGTGGTAGTCTGGTAG 59.445 50.000 0.00 0.00 0.00 3.18
153 170 2.555325 CTGTCGTTGTGGTAGTCTGGTA 59.445 50.000 0.00 0.00 0.00 3.25
154 171 1.340248 CTGTCGTTGTGGTAGTCTGGT 59.660 52.381 0.00 0.00 0.00 4.00
155 172 1.935300 GCTGTCGTTGTGGTAGTCTGG 60.935 57.143 0.00 0.00 0.00 3.86
156 173 1.000163 AGCTGTCGTTGTGGTAGTCTG 60.000 52.381 0.00 0.00 0.00 3.51
157 174 1.000163 CAGCTGTCGTTGTGGTAGTCT 60.000 52.381 5.25 0.00 0.00 3.24
158 175 1.419374 CAGCTGTCGTTGTGGTAGTC 58.581 55.000 5.25 0.00 0.00 2.59
159 176 0.033504 CCAGCTGTCGTTGTGGTAGT 59.966 55.000 13.81 0.00 0.00 2.73
215 234 6.061441 TGTCACAACCACTTACAATCATTCT 58.939 36.000 0.00 0.00 0.00 2.40
274 293 3.548818 GCCAGTTTGAGCTGTTAACACTG 60.549 47.826 3.59 8.49 34.84 3.66
293 312 5.106876 TGATTTGATGAATGAGAGAGCCA 57.893 39.130 0.00 0.00 0.00 4.75
301 320 3.884693 CGGGGTGATGATTTGATGAATGA 59.115 43.478 0.00 0.00 0.00 2.57
311 330 1.863155 AAGTGGGCGGGGTGATGATT 61.863 55.000 0.00 0.00 0.00 2.57
312 331 1.863155 AAAGTGGGCGGGGTGATGAT 61.863 55.000 0.00 0.00 0.00 2.45
313 332 2.478335 GAAAGTGGGCGGGGTGATGA 62.478 60.000 0.00 0.00 0.00 2.92
314 333 2.035626 AAAGTGGGCGGGGTGATG 59.964 61.111 0.00 0.00 0.00 3.07
315 334 2.198304 GAGAAAGTGGGCGGGGTGAT 62.198 60.000 0.00 0.00 0.00 3.06
316 335 2.852075 AGAAAGTGGGCGGGGTGA 60.852 61.111 0.00 0.00 0.00 4.02
317 336 2.359975 GAGAAAGTGGGCGGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
318 337 4.016706 CGAGAAAGTGGGCGGGGT 62.017 66.667 0.00 0.00 0.00 4.95
319 338 3.665675 CTCGAGAAAGTGGGCGGGG 62.666 68.421 6.58 0.00 0.00 5.73
363 382 1.154035 GGACGGGCGATTTGCTTTG 60.154 57.895 0.00 0.00 45.43 2.77
378 397 1.739067 ATTCTTGCAGCTAACCGGAC 58.261 50.000 9.46 0.00 0.00 4.79
379 398 2.489938 AATTCTTGCAGCTAACCGGA 57.510 45.000 9.46 0.00 0.00 5.14
417 441 3.126722 GACGAATCGCGCGGTTGAG 62.127 63.158 35.61 27.23 46.04 3.02
433 457 6.768029 ACTCTGATAAGACGAGTATACGAC 57.232 41.667 0.00 0.00 36.33 4.34
478 505 0.172803 CACTCCCTTCTACCGGTTCG 59.827 60.000 15.04 4.53 0.00 3.95
505 532 3.003585 TGTGAATCACTTGTGTGCATGTC 59.996 43.478 14.97 0.00 43.49 3.06
521 550 0.689055 TCTCTGCTGCCAGTGTGAAT 59.311 50.000 0.00 0.00 40.09 2.57
525 554 1.376942 GCATCTCTGCTGCCAGTGT 60.377 57.895 0.00 0.00 45.32 3.55
548 581 3.198872 GTGAGTGATTAGCTAGGCCAAC 58.801 50.000 5.01 0.00 0.00 3.77
565 601 4.589908 AGGCTTTATTTAGGTGGTGTGAG 58.410 43.478 0.00 0.00 0.00 3.51
623 659 4.202609 GGATTATGATGTTCCTGTGGGGAT 60.203 45.833 0.00 0.00 44.66 3.85
687 723 3.005050 TGCAAGAAAAGAGCATCCTTGTG 59.995 43.478 0.00 0.00 37.23 3.33
725 761 6.036470 GGTATGATTTGTGCTCCTTTTTAGC 58.964 40.000 0.00 0.00 40.50 3.09
739 775 6.072838 AGCAGATTAATCAGCGGTATGATTTG 60.073 38.462 22.46 7.44 45.44 2.32
749 785 3.687572 AAGCAAGCAGATTAATCAGCG 57.312 42.857 22.46 13.21 43.15 5.18
753 794 8.642020 CACACTTAAAAAGCAAGCAGATTAATC 58.358 33.333 7.41 7.41 0.00 1.75
839 886 3.801983 GCTTGAAGATAGGAGGCTGCTAC 60.802 52.174 18.48 11.88 0.00 3.58
857 905 3.365265 GCCTCAACCCACGGCTTG 61.365 66.667 0.00 0.00 40.62 4.01
904 953 3.686726 GCCTATTTCCATTATCTCAGGCG 59.313 47.826 0.00 0.00 38.11 5.52
908 957 4.507335 GGCTGGCCTATTTCCATTATCTCA 60.507 45.833 3.32 0.00 32.37 3.27
909 958 4.013050 GGCTGGCCTATTTCCATTATCTC 58.987 47.826 3.32 0.00 32.37 2.75
910 959 3.245407 GGGCTGGCCTATTTCCATTATCT 60.245 47.826 13.80 0.00 36.10 1.98
911 960 3.092301 GGGCTGGCCTATTTCCATTATC 58.908 50.000 13.80 0.00 36.10 1.75
914 963 0.105504 GGGGCTGGCCTATTTCCATT 60.106 55.000 20.47 0.00 36.10 3.16
953 1002 2.032356 TTATAGGCGGGGAGGGAGCT 62.032 60.000 0.00 0.00 0.00 4.09
1290 1343 0.657840 GCATGGATCCTTTTCGTCCG 59.342 55.000 14.23 0.00 34.72 4.79
1291 1344 1.750193 TGCATGGATCCTTTTCGTCC 58.250 50.000 14.23 0.00 0.00 4.79
1292 1345 2.542411 GCATGCATGGATCCTTTTCGTC 60.542 50.000 27.34 2.70 0.00 4.20
1293 1346 1.406539 GCATGCATGGATCCTTTTCGT 59.593 47.619 27.34 0.00 0.00 3.85
1294 1347 1.406180 TGCATGCATGGATCCTTTTCG 59.594 47.619 27.34 0.00 0.00 3.46
1295 1348 3.746045 ATGCATGCATGGATCCTTTTC 57.254 42.857 31.74 7.92 33.26 2.29
1317 1372 4.971830 CGGTTAATTTGACAGCATAGCATG 59.028 41.667 0.00 0.00 0.00 4.06
1318 1373 4.640201 ACGGTTAATTTGACAGCATAGCAT 59.360 37.500 0.00 0.00 0.00 3.79
1320 1375 4.588278 GACGGTTAATTTGACAGCATAGC 58.412 43.478 0.00 0.00 0.00 2.97
1322 1377 4.327898 GTCGACGGTTAATTTGACAGCATA 59.672 41.667 0.00 0.00 0.00 3.14
1323 1378 3.124636 GTCGACGGTTAATTTGACAGCAT 59.875 43.478 0.00 0.00 0.00 3.79
1324 1379 2.477375 GTCGACGGTTAATTTGACAGCA 59.523 45.455 0.00 0.00 0.00 4.41
1325 1380 2.471749 CGTCGACGGTTAATTTGACAGC 60.472 50.000 29.70 0.00 35.37 4.40
1326 1381 2.727798 ACGTCGACGGTTAATTTGACAG 59.272 45.455 37.89 9.18 44.95 3.51
1327 1382 2.472115 CACGTCGACGGTTAATTTGACA 59.528 45.455 37.89 0.00 44.95 3.58
1328 1383 2.719688 GCACGTCGACGGTTAATTTGAC 60.720 50.000 37.89 18.25 44.95 3.18
1329 1384 1.456544 GCACGTCGACGGTTAATTTGA 59.543 47.619 37.89 0.00 44.95 2.69
1330 1385 1.780636 CGCACGTCGACGGTTAATTTG 60.781 52.381 37.89 26.15 44.95 2.32
1331 1386 0.435769 CGCACGTCGACGGTTAATTT 59.564 50.000 37.89 15.71 44.95 1.82
1375 1430 1.711206 GAGCAAAGACGTACAGGGAC 58.289 55.000 0.00 0.00 0.00 4.46
1377 1432 0.038526 ACGAGCAAAGACGTACAGGG 60.039 55.000 0.00 0.00 40.92 4.45
1379 1434 2.792674 TCAAACGAGCAAAGACGTACAG 59.207 45.455 0.00 0.00 41.87 2.74
1479 1538 5.005740 ACGATGAATATTATGCTGGCATGT 58.994 37.500 17.09 8.88 37.82 3.21
1500 1559 1.396301 GCTTGAGCAAAGATGAGGACG 59.604 52.381 3.51 0.00 38.24 4.79
1501 1560 1.742268 GGCTTGAGCAAAGATGAGGAC 59.258 52.381 5.24 0.00 44.36 3.85
1502 1561 1.632409 AGGCTTGAGCAAAGATGAGGA 59.368 47.619 5.24 0.00 44.36 3.71
1564 1628 2.536130 GGGTGCAAATACGTCGAAATCG 60.536 50.000 0.00 0.00 41.45 3.34
1596 1660 6.326583 TCATTATCCCAACTGAACCTACCTAG 59.673 42.308 0.00 0.00 0.00 3.02
1602 1821 5.014123 TCAACTCATTATCCCAACTGAACCT 59.986 40.000 0.00 0.00 0.00 3.50
1618 1837 4.562143 GCTTTGCATTCCCTTTCAACTCAT 60.562 41.667 0.00 0.00 0.00 2.90
1619 1838 3.243839 GCTTTGCATTCCCTTTCAACTCA 60.244 43.478 0.00 0.00 0.00 3.41
1622 1843 3.391506 AGCTTTGCATTCCCTTTCAAC 57.608 42.857 0.00 0.00 0.00 3.18
1627 1849 4.835056 ACTTTCTTAGCTTTGCATTCCCTT 59.165 37.500 0.00 0.00 0.00 3.95
1659 1881 4.317980 CGTTTGTGGTGCAATCATTGTTTC 60.318 41.667 0.00 0.00 36.89 2.78
1674 1896 2.030628 ACGCTTTTTATCCCGTTTGTGG 60.031 45.455 0.00 0.00 0.00 4.17
1675 1897 2.977169 CACGCTTTTTATCCCGTTTGTG 59.023 45.455 0.00 0.00 0.00 3.33
1832 2063 4.793216 CGAACAACAACAAAAACAGGAGAG 59.207 41.667 0.00 0.00 0.00 3.20
1872 2115 0.041135 GGAGTACTAGCTAGCGTGCG 60.041 60.000 20.91 1.60 38.13 5.34
1887 2130 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
1888 2131 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1890 2133 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
1891 2134 5.118817 GCGCTCTTATATTTCTTTACGGAGG 59.881 44.000 0.00 0.00 0.00 4.30
1892 2135 5.921408 AGCGCTCTTATATTTCTTTACGGAG 59.079 40.000 2.64 0.00 0.00 4.63
1894 2137 5.921408 AGAGCGCTCTTATATTTCTTTACGG 59.079 40.000 33.83 0.00 36.31 4.02
1895 2138 6.994868 AGAGCGCTCTTATATTTCTTTACG 57.005 37.500 33.83 0.00 36.31 3.18
1909 2152 7.436673 CACTGTAAAGAAATATAAGAGCGCTCT 59.563 37.037 33.83 33.83 42.75 4.09
1910 2153 7.306866 CCACTGTAAAGAAATATAAGAGCGCTC 60.307 40.741 30.01 30.01 0.00 5.03
1911 2154 6.480320 CCACTGTAAAGAAATATAAGAGCGCT 59.520 38.462 11.27 11.27 0.00 5.92
1913 2156 6.984474 TCCCACTGTAAAGAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
1914 2157 7.988028 ACTCCCACTGTAAAGAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
1920 2163 9.490083 ACTACTACTCCCACTGTAAAGAAATAT 57.510 33.333 0.00 0.00 0.00 1.28
1921 2164 8.890410 ACTACTACTCCCACTGTAAAGAAATA 57.110 34.615 0.00 0.00 0.00 1.40
1922 2165 7.793948 ACTACTACTCCCACTGTAAAGAAAT 57.206 36.000 0.00 0.00 0.00 2.17
1923 2166 7.607615 AACTACTACTCCCACTGTAAAGAAA 57.392 36.000 0.00 0.00 0.00 2.52
1924 2167 8.746530 CATAACTACTACTCCCACTGTAAAGAA 58.253 37.037 0.00 0.00 0.00 2.52
1925 2168 7.147949 GCATAACTACTACTCCCACTGTAAAGA 60.148 40.741 0.00 0.00 0.00 2.52
1926 2169 6.979238 GCATAACTACTACTCCCACTGTAAAG 59.021 42.308 0.00 0.00 0.00 1.85
1927 2170 6.438108 TGCATAACTACTACTCCCACTGTAAA 59.562 38.462 0.00 0.00 0.00 2.01
1928 2171 5.953548 TGCATAACTACTACTCCCACTGTAA 59.046 40.000 0.00 0.00 0.00 2.41
1929 2172 5.359009 GTGCATAACTACTACTCCCACTGTA 59.641 44.000 0.00 0.00 0.00 2.74
1931 2174 4.159693 TGTGCATAACTACTACTCCCACTG 59.840 45.833 0.00 0.00 0.00 3.66
1932 2175 4.350245 TGTGCATAACTACTACTCCCACT 58.650 43.478 0.00 0.00 0.00 4.00
1933 2176 4.401519 TCTGTGCATAACTACTACTCCCAC 59.598 45.833 0.00 0.00 0.00 4.61
1934 2177 4.401519 GTCTGTGCATAACTACTACTCCCA 59.598 45.833 0.00 0.00 0.00 4.37
1935 2178 4.401519 TGTCTGTGCATAACTACTACTCCC 59.598 45.833 0.00 0.00 0.00 4.30
1936 2179 5.578005 TGTCTGTGCATAACTACTACTCC 57.422 43.478 0.00 0.00 0.00 3.85
1937 2180 5.517054 GCTTGTCTGTGCATAACTACTACTC 59.483 44.000 0.00 0.00 0.00 2.59
1938 2181 5.047306 TGCTTGTCTGTGCATAACTACTACT 60.047 40.000 0.00 0.00 33.94 2.57
1939 2182 5.168569 TGCTTGTCTGTGCATAACTACTAC 58.831 41.667 0.00 0.00 33.94 2.73
1987 2230 6.095377 GTGTAGGGATTTTCTGCAATCTTTG 58.905 40.000 0.00 0.00 34.12 2.77
1988 2231 5.774690 TGTGTAGGGATTTTCTGCAATCTTT 59.225 36.000 0.00 0.00 34.12 2.52
1989 2232 5.324409 TGTGTAGGGATTTTCTGCAATCTT 58.676 37.500 0.00 0.00 34.12 2.40
1990 2233 4.922206 TGTGTAGGGATTTTCTGCAATCT 58.078 39.130 0.00 0.00 34.12 2.40
1991 2234 5.841957 ATGTGTAGGGATTTTCTGCAATC 57.158 39.130 0.00 0.00 33.04 2.67
1992 2235 5.625197 GCAATGTGTAGGGATTTTCTGCAAT 60.625 40.000 0.00 0.00 0.00 3.56
1993 2236 4.321899 GCAATGTGTAGGGATTTTCTGCAA 60.322 41.667 0.00 0.00 0.00 4.08
1994 2237 3.193267 GCAATGTGTAGGGATTTTCTGCA 59.807 43.478 0.00 0.00 0.00 4.41
1995 2238 3.731867 CGCAATGTGTAGGGATTTTCTGC 60.732 47.826 0.00 0.00 0.00 4.26
1996 2239 3.440173 ACGCAATGTGTAGGGATTTTCTG 59.560 43.478 0.00 0.00 0.00 3.02
1997 2240 3.440173 CACGCAATGTGTAGGGATTTTCT 59.560 43.478 0.00 0.00 43.88 2.52
1998 2241 3.758300 CACGCAATGTGTAGGGATTTTC 58.242 45.455 0.00 0.00 43.88 2.29
1999 2242 3.848272 CACGCAATGTGTAGGGATTTT 57.152 42.857 0.00 0.00 43.88 1.82
2090 2336 2.721167 GGATTGCCCGGGCCTTTTC 61.721 63.158 41.75 29.24 41.09 2.29
2103 2349 7.565323 TTTTGGTTTTGAAAATGAGGGATTG 57.435 32.000 0.00 0.00 0.00 2.67
2181 2427 2.872557 CGTGGTGCTGCATCTTGG 59.127 61.111 14.82 0.00 0.00 3.61
2205 2464 6.862209 TCCTCCATTTTAACATTTTCCATCG 58.138 36.000 0.00 0.00 0.00 3.84
2372 3282 5.163824 GGAAGTGGCGTACTGGTAAAATAAC 60.164 44.000 0.00 0.00 40.26 1.89
2387 3297 0.317103 CTATCGACGAGGAAGTGGCG 60.317 60.000 3.01 0.00 0.00 5.69
2502 3413 6.176975 TCACCATAATGCTAAAAACACTCG 57.823 37.500 0.00 0.00 0.00 4.18
2531 3442 8.311836 TCCGTGGAAAATAAGATATATCAGACC 58.688 37.037 15.08 8.30 0.00 3.85
2554 3465 0.813184 AGAAGCATGTTGCCATTCCG 59.187 50.000 0.00 0.00 46.52 4.30
2630 3541 9.627123 AGGAATAACTTATATGCTTAAACTGCA 57.373 29.630 0.00 0.00 44.95 4.41
2670 3581 5.899547 AGAAGATGTTCCTTTTCTTTGGGTT 59.100 36.000 0.00 0.00 32.48 4.11
2690 3601 9.709495 CTCTCAAGGATATTGGAGATTAAGAAG 57.291 37.037 0.00 0.00 35.97 2.85
2854 3765 8.577296 TGTAGATTATAGTTGGTAGTCTGCATC 58.423 37.037 0.00 0.00 30.04 3.91
2905 3816 3.482783 GCTCGCACACCTCGAAGC 61.483 66.667 0.00 0.00 35.38 3.86
2947 3858 0.179032 TGGAAAAGGCTCTTCACGCA 60.179 50.000 2.55 0.00 0.00 5.24
2982 3893 3.920093 CTCGTTTGGGGAGGCCACC 62.920 68.421 11.39 11.39 0.00 4.61
3006 3917 4.781959 CATTGGTTGCAGGCCGCG 62.782 66.667 13.55 0.00 46.97 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.