Multiple sequence alignment - TraesCS1D01G368100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G368100 chr1D 100.000 5538 0 0 1 5538 447762812 447757275 0.000000e+00 10227.0
1 TraesCS1D01G368100 chr1D 88.342 1218 114 20 3013 4212 447776721 447775514 0.000000e+00 1437.0
2 TraesCS1D01G368100 chr1D 93.605 516 29 1 1 516 418519792 418520303 0.000000e+00 767.0
3 TraesCS1D01G368100 chr1D 97.613 377 7 2 2491 2867 277082194 277081820 0.000000e+00 645.0
4 TraesCS1D01G368100 chr1D 89.711 311 20 8 946 1253 447778297 447777996 2.420000e-103 387.0
5 TraesCS1D01G368100 chr1D 89.338 272 24 1 1385 1651 447777780 447777509 2.470000e-88 337.0
6 TraesCS1D01G368100 chr1D 87.085 271 33 1 2875 3145 447776985 447776717 6.970000e-79 305.0
7 TraesCS1D01G368100 chr1B 93.810 1260 65 8 2875 4131 613234800 613233551 0.000000e+00 1882.0
8 TraesCS1D01G368100 chr1B 88.500 1087 67 20 4164 5224 613233556 613232502 0.000000e+00 1262.0
9 TraesCS1D01G368100 chr1B 91.059 850 60 8 1651 2496 613235983 613235146 0.000000e+00 1134.0
10 TraesCS1D01G368100 chr1B 90.070 715 63 4 3099 3805 613245931 613245217 0.000000e+00 920.0
11 TraesCS1D01G368100 chr1B 94.197 517 26 1 1 517 57805532 57805020 0.000000e+00 785.0
12 TraesCS1D01G368100 chr1B 87.455 558 30 20 708 1253 613237001 613236472 1.710000e-169 606.0
13 TraesCS1D01G368100 chr1B 92.371 367 20 4 1292 1651 613236384 613236019 2.960000e-142 516.0
14 TraesCS1D01G368100 chr1B 81.705 645 51 26 3859 4452 613245200 613244572 5.020000e-130 475.0
15 TraesCS1D01G368100 chr1B 87.859 313 29 6 946 1253 613249768 613249460 5.270000e-95 359.0
16 TraesCS1D01G368100 chr1B 90.262 267 24 2 1387 1652 613246953 613246688 1.140000e-91 348.0
17 TraesCS1D01G368100 chr1B 89.109 202 13 2 5239 5432 613232363 613232163 5.540000e-60 243.0
18 TraesCS1D01G368100 chr1B 86.232 138 13 6 1298 1431 577179046 577178911 1.610000e-30 145.0
19 TraesCS1D01G368100 chr1B 96.591 88 1 2 2875 2961 613234973 613234887 1.610000e-30 145.0
20 TraesCS1D01G368100 chr1B 96.591 88 1 2 2875 2961 613235146 613235060 1.610000e-30 145.0
21 TraesCS1D01G368100 chr1B 95.775 71 3 0 2426 2496 613235043 613234973 1.260000e-21 115.0
22 TraesCS1D01G368100 chr1B 86.667 75 6 4 562 634 613237092 613237020 4.600000e-11 80.5
23 TraesCS1D01G368100 chr1A 88.941 1284 88 23 3973 5224 543930351 543929090 0.000000e+00 1535.0
24 TraesCS1D01G368100 chr1A 93.446 1007 58 4 2875 3880 543932123 543931124 0.000000e+00 1487.0
25 TraesCS1D01G368100 chr1A 87.813 1157 107 22 3073 4212 543950262 543949123 0.000000e+00 1325.0
26 TraesCS1D01G368100 chr1A 87.801 1123 53 26 575 1653 543934011 543932929 0.000000e+00 1238.0
27 TraesCS1D01G368100 chr1A 91.773 705 41 5 1793 2496 543932811 543932123 0.000000e+00 965.0
28 TraesCS1D01G368100 chr1A 97.574 371 9 0 2496 2866 579300177 579299807 2.180000e-178 636.0
29 TraesCS1D01G368100 chr1A 88.971 272 26 2 1385 1652 543951286 543951015 3.200000e-87 333.0
30 TraesCS1D01G368100 chr1A 86.719 256 17 3 998 1253 543951684 543951446 9.140000e-68 268.0
31 TraesCS1D01G368100 chr1A 84.556 259 20 8 4213 4452 543949094 543948837 7.170000e-59 239.0
32 TraesCS1D01G368100 chr1A 78.810 420 39 22 5152 5538 543929039 543928637 2.580000e-58 237.0
33 TraesCS1D01G368100 chr1A 92.857 112 7 1 3879 3989 543930834 543930723 1.600000e-35 161.0
34 TraesCS1D01G368100 chr1A 97.674 43 1 0 1384 1426 543933276 543933234 2.140000e-09 75.0
35 TraesCS1D01G368100 chr7D 94.186 516 25 2 1 516 411309284 411309794 0.000000e+00 782.0
36 TraesCS1D01G368100 chr7D 93.605 516 29 1 1 516 566945268 566945779 0.000000e+00 767.0
37 TraesCS1D01G368100 chr7D 93.411 516 30 1 1 516 4582740 4582229 0.000000e+00 761.0
38 TraesCS1D01G368100 chr7D 98.928 373 4 0 2495 2867 620597893 620597521 0.000000e+00 667.0
39 TraesCS1D01G368100 chr2D 93.810 517 28 1 1 517 13593919 13594431 0.000000e+00 774.0
40 TraesCS1D01G368100 chr2D 93.605 516 29 1 1 516 113920549 113920038 0.000000e+00 767.0
41 TraesCS1D01G368100 chr2B 93.810 517 28 3 1 517 8498070 8497558 0.000000e+00 774.0
42 TraesCS1D01G368100 chr2B 80.804 224 30 8 1038 1253 289631888 289632106 4.440000e-36 163.0
43 TraesCS1D01G368100 chr2B 79.051 253 37 10 1011 1253 107587612 107587858 5.740000e-35 159.0
44 TraesCS1D01G368100 chr2B 90.000 90 9 0 1539 1628 286903760 286903671 3.510000e-22 117.0
45 TraesCS1D01G368100 chr2B 88.889 90 10 0 1539 1628 368593842 368593931 1.630000e-20 111.0
46 TraesCS1D01G368100 chr2B 97.500 40 1 0 5499 5538 628157420 628157381 9.950000e-08 69.4
47 TraesCS1D01G368100 chrUn 93.945 512 27 1 1 512 68800752 68801259 0.000000e+00 771.0
48 TraesCS1D01G368100 chr5D 98.177 384 5 2 2485 2867 14600361 14600743 0.000000e+00 669.0
49 TraesCS1D01G368100 chr5D 97.067 375 11 0 2493 2867 202504356 202503982 2.810000e-177 632.0
50 TraesCS1D01G368100 chr5D 94.030 67 3 1 1375 1440 211817081 211817015 3.530000e-17 100.0
51 TraesCS1D01G368100 chr3D 98.663 374 4 1 2494 2866 395784066 395783693 0.000000e+00 662.0
52 TraesCS1D01G368100 chr4A 98.396 374 6 0 2495 2868 430872120 430871747 0.000000e+00 658.0
53 TraesCS1D01G368100 chr7A 97.855 373 8 0 2495 2867 41993952 41993580 0.000000e+00 645.0
54 TraesCS1D01G368100 chr7A 100.000 43 0 0 5496 5538 628524362 628524404 4.600000e-11 80.5
55 TraesCS1D01G368100 chr4D 97.319 373 10 0 2495 2867 31213927 31214299 7.830000e-178 634.0
56 TraesCS1D01G368100 chr4B 78.797 665 82 24 810 1431 47117685 47117037 5.200000e-105 392.0
57 TraesCS1D01G368100 chr5B 90.909 88 8 0 1539 1626 425434972 425435059 9.750000e-23 119.0
58 TraesCS1D01G368100 chr6A 95.000 40 1 1 5150 5189 32912918 32912956 1.670000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G368100 chr1D 447757275 447762812 5537 True 10227.00 10227 100.00000 1 5538 1 chr1D.!!$R2 5537
1 TraesCS1D01G368100 chr1D 418519792 418520303 511 False 767.00 767 93.60500 1 516 1 chr1D.!!$F1 515
2 TraesCS1D01G368100 chr1D 447775514 447778297 2783 True 616.50 1437 88.61900 946 4212 4 chr1D.!!$R3 3266
3 TraesCS1D01G368100 chr1B 57805020 57805532 512 True 785.00 785 94.19700 1 517 1 chr1B.!!$R1 516
4 TraesCS1D01G368100 chr1B 613232163 613237092 4929 True 612.85 1882 91.79280 562 5432 10 chr1B.!!$R3 4870
5 TraesCS1D01G368100 chr1B 613244572 613249768 5196 True 525.50 920 87.47400 946 4452 4 chr1B.!!$R4 3506
6 TraesCS1D01G368100 chr1A 543928637 543934011 5374 True 814.00 1535 90.18600 575 5538 7 chr1A.!!$R2 4963
7 TraesCS1D01G368100 chr1A 543948837 543951684 2847 True 541.25 1325 87.01475 998 4452 4 chr1A.!!$R3 3454
8 TraesCS1D01G368100 chr7D 411309284 411309794 510 False 782.00 782 94.18600 1 516 1 chr7D.!!$F1 515
9 TraesCS1D01G368100 chr7D 566945268 566945779 511 False 767.00 767 93.60500 1 516 1 chr7D.!!$F2 515
10 TraesCS1D01G368100 chr7D 4582229 4582740 511 True 761.00 761 93.41100 1 516 1 chr7D.!!$R1 515
11 TraesCS1D01G368100 chr2D 13593919 13594431 512 False 774.00 774 93.81000 1 517 1 chr2D.!!$F1 516
12 TraesCS1D01G368100 chr2D 113920038 113920549 511 True 767.00 767 93.60500 1 516 1 chr2D.!!$R1 515
13 TraesCS1D01G368100 chr2B 8497558 8498070 512 True 774.00 774 93.81000 1 517 1 chr2B.!!$R1 516
14 TraesCS1D01G368100 chrUn 68800752 68801259 507 False 771.00 771 93.94500 1 512 1 chrUn.!!$F1 511
15 TraesCS1D01G368100 chr4B 47117037 47117685 648 True 392.00 392 78.79700 810 1431 1 chr4B.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 911 0.033011 ACCCATCGACTACCTCAGCT 60.033 55.0 0.00 0.0 0.00 4.24 F
1709 4423 0.107410 TGGTGTGTCTGTGTGTTCCC 60.107 55.0 0.00 0.0 0.00 3.97 F
2808 5763 0.036388 GCCATCTCTTGACCGTTGGA 60.036 55.0 0.00 0.0 0.00 3.53 F
2850 5805 0.692476 TGTGGAGCTATTGGCACACT 59.308 50.0 16.49 0.0 45.07 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2789 5744 0.036388 TCCAACGGTCAAGAGATGGC 60.036 55.0 0.00 0.0 0.00 4.40 R
2974 6102 0.390340 GCATCCAAGACTGCTCGACA 60.390 55.0 0.00 0.0 35.49 4.35 R
4075 8307 0.240945 CACCGGAATGGCAAAGTGAC 59.759 55.0 9.46 0.0 43.94 3.67 R
4764 9077 0.460109 GGGCAATTTTTAGCAGCGGG 60.460 55.0 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 2.604174 CCTGTTTCGGTGGTGCGTC 61.604 63.158 0.00 0.00 0.00 5.19
122 123 1.594293 CTGTTTCGGTGGTGCGTCT 60.594 57.895 0.00 0.00 0.00 4.18
123 124 0.319211 CTGTTTCGGTGGTGCGTCTA 60.319 55.000 0.00 0.00 0.00 2.59
124 125 0.319211 TGTTTCGGTGGTGCGTCTAG 60.319 55.000 0.00 0.00 0.00 2.43
190 191 1.218047 CCTCGGTGGATTTGCTCGA 59.782 57.895 0.00 0.00 38.35 4.04
251 252 4.041740 TGGATCCTTTCGATCTACGTTG 57.958 45.455 14.23 0.00 45.90 4.10
275 276 3.055719 ATCAGCGGCGGTTGTTGG 61.056 61.111 9.73 0.00 0.00 3.77
376 377 3.458163 GAGGGGTGATGACGGCGA 61.458 66.667 16.62 0.00 0.00 5.54
410 411 1.321743 CGCTTCAGTGATTGTAGTCGC 59.678 52.381 0.00 0.00 0.00 5.19
413 414 0.885879 TCAGTGATTGTAGTCGCCGT 59.114 50.000 0.00 0.00 0.00 5.68
415 416 1.390123 CAGTGATTGTAGTCGCCGTTG 59.610 52.381 0.00 0.00 0.00 4.10
443 444 5.927115 GGTCTACGGATCTGGATGTAATTTC 59.073 44.000 6.47 0.00 0.00 2.17
520 521 7.831750 AGTTTTCTCGTAAAAATAAAGTGCG 57.168 32.000 1.06 0.00 31.29 5.34
521 522 6.358822 AGTTTTCTCGTAAAAATAAAGTGCGC 59.641 34.615 0.00 0.00 31.29 6.09
522 523 4.330740 TCTCGTAAAAATAAAGTGCGCC 57.669 40.909 4.18 0.00 0.00 6.53
523 524 3.747010 TCTCGTAAAAATAAAGTGCGCCA 59.253 39.130 4.18 0.00 0.00 5.69
524 525 4.393680 TCTCGTAAAAATAAAGTGCGCCAT 59.606 37.500 4.18 0.00 0.00 4.40
525 526 4.407818 TCGTAAAAATAAAGTGCGCCATG 58.592 39.130 4.18 0.00 0.00 3.66
526 527 3.545873 CGTAAAAATAAAGTGCGCCATGG 59.454 43.478 7.63 7.63 0.00 3.66
527 528 2.671130 AAAATAAAGTGCGCCATGGG 57.329 45.000 15.13 4.77 0.00 4.00
528 529 0.175531 AAATAAAGTGCGCCATGGGC 59.824 50.000 15.13 15.60 46.75 5.36
543 544 4.147135 GGCACTCCCCTCCTGTAA 57.853 61.111 0.00 0.00 0.00 2.41
544 545 2.621486 GGCACTCCCCTCCTGTAAT 58.379 57.895 0.00 0.00 0.00 1.89
545 546 0.181350 GGCACTCCCCTCCTGTAATG 59.819 60.000 0.00 0.00 0.00 1.90
546 547 0.912486 GCACTCCCCTCCTGTAATGT 59.088 55.000 0.00 0.00 0.00 2.71
547 548 2.116238 GCACTCCCCTCCTGTAATGTA 58.884 52.381 0.00 0.00 0.00 2.29
548 549 2.504175 GCACTCCCCTCCTGTAATGTAA 59.496 50.000 0.00 0.00 0.00 2.41
549 550 3.054655 GCACTCCCCTCCTGTAATGTAAA 60.055 47.826 0.00 0.00 0.00 2.01
550 551 4.566907 GCACTCCCCTCCTGTAATGTAAAA 60.567 45.833 0.00 0.00 0.00 1.52
551 552 5.566469 CACTCCCCTCCTGTAATGTAAAAA 58.434 41.667 0.00 0.00 0.00 1.94
645 646 2.695666 GAGGGGAAGATGAGAACGATGA 59.304 50.000 0.00 0.00 0.00 2.92
646 647 3.312890 AGGGGAAGATGAGAACGATGAT 58.687 45.455 0.00 0.00 0.00 2.45
676 677 2.143122 CCTAGTGCAAACGCTCAAGAA 58.857 47.619 0.00 0.00 37.86 2.52
736 737 4.106925 CACCCAGCAGCCTCCCTC 62.107 72.222 0.00 0.00 0.00 4.30
737 738 4.664267 ACCCAGCAGCCTCCCTCA 62.664 66.667 0.00 0.00 0.00 3.86
739 740 2.271497 CCAGCAGCCTCCCTCAAG 59.729 66.667 0.00 0.00 0.00 3.02
899 903 1.687840 CCCACCCACCCATCGACTA 60.688 63.158 0.00 0.00 0.00 2.59
901 905 1.520666 CACCCACCCATCGACTACC 59.479 63.158 0.00 0.00 0.00 3.18
902 906 0.976073 CACCCACCCATCGACTACCT 60.976 60.000 0.00 0.00 0.00 3.08
903 907 0.686769 ACCCACCCATCGACTACCTC 60.687 60.000 0.00 0.00 0.00 3.85
904 908 0.686441 CCCACCCATCGACTACCTCA 60.686 60.000 0.00 0.00 0.00 3.86
905 909 0.747255 CCACCCATCGACTACCTCAG 59.253 60.000 0.00 0.00 0.00 3.35
906 910 0.103208 CACCCATCGACTACCTCAGC 59.897 60.000 0.00 0.00 0.00 4.26
907 911 0.033011 ACCCATCGACTACCTCAGCT 60.033 55.000 0.00 0.00 0.00 4.24
908 912 0.671251 CCCATCGACTACCTCAGCTC 59.329 60.000 0.00 0.00 0.00 4.09
909 913 1.686355 CCATCGACTACCTCAGCTCT 58.314 55.000 0.00 0.00 0.00 4.09
910 914 1.606668 CCATCGACTACCTCAGCTCTC 59.393 57.143 0.00 0.00 0.00 3.20
911 915 1.606668 CATCGACTACCTCAGCTCTCC 59.393 57.143 0.00 0.00 0.00 3.71
912 916 0.913205 TCGACTACCTCAGCTCTCCT 59.087 55.000 0.00 0.00 0.00 3.69
913 917 1.134340 TCGACTACCTCAGCTCTCCTC 60.134 57.143 0.00 0.00 0.00 3.71
1178 1193 1.620819 TGACCCTCTTCTCTGCTTGTC 59.379 52.381 0.00 0.00 0.00 3.18
1181 1196 1.274712 CCTCTTCTCTGCTTGTCCCT 58.725 55.000 0.00 0.00 0.00 4.20
1191 1209 0.678048 GCTTGTCCCTTTCGCCAGAT 60.678 55.000 0.00 0.00 0.00 2.90
1242 1260 1.154131 CGACGTGCAGGAGTCTGAG 60.154 63.158 14.38 0.00 43.49 3.35
1253 1271 1.751924 GGAGTCTGAGTCGCTGGTAAT 59.248 52.381 6.42 0.00 0.00 1.89
1305 3861 1.153469 TTGTCTGTGCTGTGCGTCA 60.153 52.632 0.00 0.00 0.00 4.35
1312 3868 0.166814 GTGCTGTGCGTCAGATTTCC 59.833 55.000 11.97 0.00 46.27 3.13
1321 3877 2.343101 CGTCAGATTTCCGTTTGGCTA 58.657 47.619 0.00 0.00 34.14 3.93
1344 3900 0.549950 TCCCGTAGACGAGGAGGATT 59.450 55.000 3.07 0.00 43.02 3.01
1353 3909 5.476091 AGACGAGGAGGATTGGATTTATC 57.524 43.478 0.00 0.00 0.00 1.75
1356 3912 5.555017 ACGAGGAGGATTGGATTTATCATG 58.445 41.667 0.00 0.00 0.00 3.07
1595 4158 1.005037 GGCATGTCCGACACACTCA 60.005 57.895 2.57 0.00 38.04 3.41
1610 4173 1.810532 CTCACGGTGAGCTCCCTAC 59.189 63.158 23.81 2.31 37.72 3.18
1635 4198 2.736682 CGTTTCCGCCTTACGCCAG 61.737 63.158 0.00 0.00 41.76 4.85
1673 4387 1.774254 TGTGACCACCATGGACTTCTT 59.226 47.619 21.47 0.00 40.96 2.52
1693 4407 1.696063 ACAGATTTTGCTGCTGTGGT 58.304 45.000 0.00 0.00 41.02 4.16
1694 4408 1.338973 ACAGATTTTGCTGCTGTGGTG 59.661 47.619 0.00 0.00 41.02 4.17
1695 4409 1.338973 CAGATTTTGCTGCTGTGGTGT 59.661 47.619 0.00 0.00 0.00 4.16
1696 4410 1.338973 AGATTTTGCTGCTGTGGTGTG 59.661 47.619 0.00 0.00 0.00 3.82
1697 4411 1.067516 GATTTTGCTGCTGTGGTGTGT 59.932 47.619 0.00 0.00 0.00 3.72
1698 4412 0.455410 TTTTGCTGCTGTGGTGTGTC 59.545 50.000 0.00 0.00 0.00 3.67
1699 4413 0.394216 TTTGCTGCTGTGGTGTGTCT 60.394 50.000 0.00 0.00 0.00 3.41
1700 4414 1.096967 TTGCTGCTGTGGTGTGTCTG 61.097 55.000 0.00 0.00 0.00 3.51
1701 4415 1.524621 GCTGCTGTGGTGTGTCTGT 60.525 57.895 0.00 0.00 0.00 3.41
1702 4416 1.779025 GCTGCTGTGGTGTGTCTGTG 61.779 60.000 0.00 0.00 0.00 3.66
1703 4417 0.462581 CTGCTGTGGTGTGTCTGTGT 60.463 55.000 0.00 0.00 0.00 3.72
1704 4418 0.744057 TGCTGTGGTGTGTCTGTGTG 60.744 55.000 0.00 0.00 0.00 3.82
1705 4419 0.744414 GCTGTGGTGTGTCTGTGTGT 60.744 55.000 0.00 0.00 0.00 3.72
1706 4420 1.737838 CTGTGGTGTGTCTGTGTGTT 58.262 50.000 0.00 0.00 0.00 3.32
1707 4421 1.665679 CTGTGGTGTGTCTGTGTGTTC 59.334 52.381 0.00 0.00 0.00 3.18
1708 4422 1.014352 GTGGTGTGTCTGTGTGTTCC 58.986 55.000 0.00 0.00 0.00 3.62
1709 4423 0.107410 TGGTGTGTCTGTGTGTTCCC 60.107 55.000 0.00 0.00 0.00 3.97
1710 4424 0.180406 GGTGTGTCTGTGTGTTCCCT 59.820 55.000 0.00 0.00 0.00 4.20
1711 4425 1.583054 GTGTGTCTGTGTGTTCCCTC 58.417 55.000 0.00 0.00 0.00 4.30
1712 4426 1.134521 GTGTGTCTGTGTGTTCCCTCA 60.135 52.381 0.00 0.00 0.00 3.86
1713 4427 1.138859 TGTGTCTGTGTGTTCCCTCAG 59.861 52.381 0.00 0.00 0.00 3.35
1714 4428 0.758734 TGTCTGTGTGTTCCCTCAGG 59.241 55.000 0.00 0.00 0.00 3.86
1715 4429 1.048601 GTCTGTGTGTTCCCTCAGGA 58.951 55.000 0.00 0.00 41.88 3.86
1738 4478 1.665679 CAGTGTGTCTGTGTGTTCCAC 59.334 52.381 0.00 0.00 44.78 4.02
1767 4507 1.594293 CGTGTCTGTGTGTGACCCC 60.594 63.158 0.00 0.00 33.83 4.95
1771 4511 0.532862 GTCTGTGTGTGACCCCAGTG 60.533 60.000 0.00 0.00 0.00 3.66
1883 4625 5.830991 ACCTGTATTGTTTTTAAGTGCCTGA 59.169 36.000 0.00 0.00 0.00 3.86
1893 4635 5.705609 TTTAAGTGCCTGAGTTGGATTTC 57.294 39.130 0.00 0.00 0.00 2.17
1894 4636 2.957402 AGTGCCTGAGTTGGATTTCA 57.043 45.000 0.00 0.00 0.00 2.69
1919 4661 2.028112 TGTGAGTTGAGCCCATACTGTC 60.028 50.000 0.00 0.00 0.00 3.51
1973 4715 7.039853 TGGCATTCACTTGAAAACTTGATGATA 60.040 33.333 0.00 0.00 37.61 2.15
2013 4755 5.933790 TGGTGTAGTTTTGCGTTAATGATC 58.066 37.500 0.00 0.00 0.00 2.92
2040 4782 7.152645 TGTTAGTTCCTGTGTTTCTGATAGTC 58.847 38.462 0.00 0.00 0.00 2.59
2049 4791 8.740906 CCTGTGTTTCTGATAGTCTTAGTTCTA 58.259 37.037 0.00 0.00 0.00 2.10
2105 4848 4.209538 GTTAACTTGGTTACCCCACTGTT 58.790 43.478 0.00 0.00 45.19 3.16
2124 4867 0.988145 TCGGGGAAGCTGGGATGAAT 60.988 55.000 0.00 0.00 0.00 2.57
2159 4903 3.903714 AGGCAGGATTTTAAAGCAAAGGT 59.096 39.130 0.00 0.00 0.00 3.50
2173 4917 6.909550 AAGCAAAGGTGTAAATATTGTGGA 57.090 33.333 0.00 0.00 0.00 4.02
2184 4928 8.474025 GTGTAAATATTGTGGATTTTGGGATCA 58.526 33.333 0.00 0.00 0.00 2.92
2220 4964 9.173939 GACATTGTAAGACTTTGAATTGTGAAG 57.826 33.333 0.00 0.00 0.00 3.02
2285 5029 6.055231 TGTAAAACAGTGTGCAGTATTGTC 57.945 37.500 0.00 0.00 0.00 3.18
2362 5110 4.498241 CATGAAGTGAGCACTGCTACTAA 58.502 43.478 2.71 2.07 41.58 2.24
2368 5116 4.651503 AGTGAGCACTGCTACTAATATGGT 59.348 41.667 2.71 0.00 39.88 3.55
2387 5135 3.566322 TGGTTTGTGATGGTTTTAGTCGG 59.434 43.478 0.00 0.00 0.00 4.79
2388 5136 3.566742 GGTTTGTGATGGTTTTAGTCGGT 59.433 43.478 0.00 0.00 0.00 4.69
2389 5137 4.756135 GGTTTGTGATGGTTTTAGTCGGTA 59.244 41.667 0.00 0.00 0.00 4.02
2390 5138 5.106830 GGTTTGTGATGGTTTTAGTCGGTAG 60.107 44.000 0.00 0.00 0.00 3.18
2391 5139 5.471556 TTGTGATGGTTTTAGTCGGTAGA 57.528 39.130 0.00 0.00 0.00 2.59
2392 5140 5.670792 TGTGATGGTTTTAGTCGGTAGAT 57.329 39.130 0.00 0.00 0.00 1.98
2401 5149 8.077991 TGGTTTTAGTCGGTAGATATAATGTCG 58.922 37.037 0.00 0.00 0.00 4.35
2485 5440 5.563876 AGATACATGCCTTCTGTGATCAT 57.436 39.130 0.00 0.00 0.00 2.45
2495 5450 7.508687 TGCCTTCTGTGATCATTTTATAGCTA 58.491 34.615 0.00 0.00 0.00 3.32
2496 5451 7.442364 TGCCTTCTGTGATCATTTTATAGCTAC 59.558 37.037 0.00 0.00 0.00 3.58
2497 5452 7.659390 GCCTTCTGTGATCATTTTATAGCTACT 59.341 37.037 0.00 0.00 0.00 2.57
2513 5468 9.669353 TTATAGCTACTAGTAAATTGTACGTGC 57.331 33.333 3.76 0.00 0.00 5.34
2514 5469 6.205101 AGCTACTAGTAAATTGTACGTGCT 57.795 37.500 4.97 2.38 0.00 4.40
2515 5470 6.628185 AGCTACTAGTAAATTGTACGTGCTT 58.372 36.000 4.97 0.00 0.00 3.91
2516 5471 7.095270 AGCTACTAGTAAATTGTACGTGCTTT 58.905 34.615 4.97 0.65 0.00 3.51
2517 5472 7.063074 AGCTACTAGTAAATTGTACGTGCTTTG 59.937 37.037 4.97 0.00 0.00 2.77
2518 5473 5.923665 ACTAGTAAATTGTACGTGCTTTGC 58.076 37.500 4.97 2.00 0.00 3.68
2519 5474 4.822036 AGTAAATTGTACGTGCTTTGCA 57.178 36.364 4.97 0.00 35.60 4.08
2533 5488 4.615949 TGCTTTGCACGTCATTTAAATGT 58.384 34.783 23.95 6.09 34.03 2.71
2534 5489 5.763088 TGCTTTGCACGTCATTTAAATGTA 58.237 33.333 23.95 11.02 34.03 2.29
2535 5490 6.385843 TGCTTTGCACGTCATTTAAATGTAT 58.614 32.000 23.95 10.78 34.03 2.29
2536 5491 7.530863 TGCTTTGCACGTCATTTAAATGTATA 58.469 30.769 23.95 6.09 34.03 1.47
2537 5492 8.187480 TGCTTTGCACGTCATTTAAATGTATAT 58.813 29.630 23.95 8.96 34.03 0.86
2538 5493 9.658475 GCTTTGCACGTCATTTAAATGTATATA 57.342 29.630 23.95 5.40 37.65 0.86
2562 5517 9.956640 ATAAAAAGCATGGGAAAATACATTTGA 57.043 25.926 0.00 0.00 0.00 2.69
2563 5518 8.688747 AAAAAGCATGGGAAAATACATTTGAA 57.311 26.923 0.00 0.00 0.00 2.69
2564 5519 8.866970 AAAAGCATGGGAAAATACATTTGAAT 57.133 26.923 0.00 0.00 0.00 2.57
2565 5520 9.956640 AAAAGCATGGGAAAATACATTTGAATA 57.043 25.926 0.00 0.00 0.00 1.75
2567 5522 9.550406 AAGCATGGGAAAATACATTTGAATATG 57.450 29.630 0.00 0.00 0.00 1.78
2568 5523 8.707449 AGCATGGGAAAATACATTTGAATATGT 58.293 29.630 0.00 0.00 41.43 2.29
2569 5524 9.979578 GCATGGGAAAATACATTTGAATATGTA 57.020 29.630 0.00 0.00 43.15 2.29
2592 5547 9.542462 TGTATTTCCTTTCCTAGAATCGTATTG 57.458 33.333 0.00 0.00 0.00 1.90
2593 5548 8.989980 GTATTTCCTTTCCTAGAATCGTATTGG 58.010 37.037 0.00 0.00 0.00 3.16
2594 5549 6.801718 TTCCTTTCCTAGAATCGTATTGGA 57.198 37.500 0.00 0.00 0.00 3.53
2595 5550 6.158023 TCCTTTCCTAGAATCGTATTGGAC 57.842 41.667 0.00 0.00 0.00 4.02
2596 5551 5.659525 TCCTTTCCTAGAATCGTATTGGACA 59.340 40.000 0.00 0.00 0.00 4.02
2597 5552 6.155565 TCCTTTCCTAGAATCGTATTGGACAA 59.844 38.462 0.00 0.00 0.00 3.18
2598 5553 6.480320 CCTTTCCTAGAATCGTATTGGACAAG 59.520 42.308 0.00 0.00 0.00 3.16
2599 5554 6.785337 TTCCTAGAATCGTATTGGACAAGA 57.215 37.500 0.00 0.00 0.00 3.02
2600 5555 6.978674 TCCTAGAATCGTATTGGACAAGAT 57.021 37.500 0.00 0.00 0.00 2.40
2601 5556 6.982852 TCCTAGAATCGTATTGGACAAGATC 58.017 40.000 0.00 0.00 0.00 2.75
2613 5568 3.756117 GGACAAGATCCAACTTGGTTCT 58.244 45.455 13.66 13.66 45.78 3.01
2619 5574 5.167303 AGATCCAACTTGGTTCTTACCTC 57.833 43.478 13.66 0.00 42.34 3.85
2620 5575 4.846940 AGATCCAACTTGGTTCTTACCTCT 59.153 41.667 13.66 1.42 42.34 3.69
2621 5576 4.618920 TCCAACTTGGTTCTTACCTCTC 57.381 45.455 7.72 0.00 45.27 3.20
2622 5577 4.232091 TCCAACTTGGTTCTTACCTCTCT 58.768 43.478 7.72 0.00 45.27 3.10
2623 5578 5.399991 TCCAACTTGGTTCTTACCTCTCTA 58.600 41.667 7.72 0.00 45.27 2.43
2624 5579 5.480772 TCCAACTTGGTTCTTACCTCTCTAG 59.519 44.000 7.72 0.00 45.27 2.43
2625 5580 5.480772 CCAACTTGGTTCTTACCTCTCTAGA 59.519 44.000 0.00 0.00 45.27 2.43
2626 5581 6.014499 CCAACTTGGTTCTTACCTCTCTAGAA 60.014 42.308 0.00 0.00 45.27 2.10
2627 5582 7.310734 CCAACTTGGTTCTTACCTCTCTAGAAT 60.311 40.741 0.00 0.00 45.27 2.40
2628 5583 7.412853 ACTTGGTTCTTACCTCTCTAGAATC 57.587 40.000 0.00 0.00 45.27 2.52
2629 5584 6.381707 ACTTGGTTCTTACCTCTCTAGAATCC 59.618 42.308 0.00 0.00 45.27 3.01
2630 5585 5.838955 TGGTTCTTACCTCTCTAGAATCCA 58.161 41.667 0.00 0.00 45.27 3.41
2631 5586 5.894393 TGGTTCTTACCTCTCTAGAATCCAG 59.106 44.000 0.00 0.00 45.27 3.86
2632 5587 6.130569 GGTTCTTACCTCTCTAGAATCCAGA 58.869 44.000 0.00 0.00 41.53 3.86
2633 5588 6.780522 GGTTCTTACCTCTCTAGAATCCAGAT 59.219 42.308 0.00 0.00 41.53 2.90
2634 5589 7.289084 GGTTCTTACCTCTCTAGAATCCAGATT 59.711 40.741 0.00 0.00 41.53 2.40
2635 5590 7.831691 TCTTACCTCTCTAGAATCCAGATTG 57.168 40.000 0.00 0.00 0.00 2.67
2636 5591 7.358263 TCTTACCTCTCTAGAATCCAGATTGT 58.642 38.462 0.00 0.00 0.00 2.71
2637 5592 7.841729 TCTTACCTCTCTAGAATCCAGATTGTT 59.158 37.037 0.00 0.00 0.00 2.83
2638 5593 6.478512 ACCTCTCTAGAATCCAGATTGTTC 57.521 41.667 0.00 0.00 0.00 3.18
2639 5594 6.201591 ACCTCTCTAGAATCCAGATTGTTCT 58.798 40.000 0.00 0.00 36.30 3.01
2640 5595 7.358263 ACCTCTCTAGAATCCAGATTGTTCTA 58.642 38.462 0.00 0.00 34.33 2.10
2641 5596 7.505585 ACCTCTCTAGAATCCAGATTGTTCTAG 59.494 40.741 12.75 12.75 46.49 2.43
2642 5597 7.505585 CCTCTCTAGAATCCAGATTGTTCTAGT 59.494 40.741 16.49 0.00 45.82 2.57
2643 5598 8.458573 TCTCTAGAATCCAGATTGTTCTAGTC 57.541 38.462 16.49 0.00 45.82 2.59
2644 5599 7.504238 TCTCTAGAATCCAGATTGTTCTAGTCC 59.496 40.741 16.49 0.00 45.82 3.85
2645 5600 5.622346 AGAATCCAGATTGTTCTAGTCCC 57.378 43.478 0.00 0.00 30.85 4.46
2646 5601 5.284582 AGAATCCAGATTGTTCTAGTCCCT 58.715 41.667 0.00 0.00 30.85 4.20
2647 5602 5.728741 AGAATCCAGATTGTTCTAGTCCCTT 59.271 40.000 0.00 0.00 30.85 3.95
2648 5603 6.216456 AGAATCCAGATTGTTCTAGTCCCTTT 59.784 38.462 0.00 0.00 30.85 3.11
2649 5604 5.843019 TCCAGATTGTTCTAGTCCCTTTT 57.157 39.130 0.00 0.00 0.00 2.27
2650 5605 6.200878 TCCAGATTGTTCTAGTCCCTTTTT 57.799 37.500 0.00 0.00 0.00 1.94
2651 5606 7.324388 TCCAGATTGTTCTAGTCCCTTTTTA 57.676 36.000 0.00 0.00 0.00 1.52
2652 5607 7.928873 TCCAGATTGTTCTAGTCCCTTTTTAT 58.071 34.615 0.00 0.00 0.00 1.40
2653 5608 8.390921 TCCAGATTGTTCTAGTCCCTTTTTATT 58.609 33.333 0.00 0.00 0.00 1.40
2654 5609 9.681062 CCAGATTGTTCTAGTCCCTTTTTATTA 57.319 33.333 0.00 0.00 0.00 0.98
2676 5631 7.745620 TTAGAGTATCAGATAAGCATGTCGA 57.254 36.000 0.00 0.00 37.82 4.20
2677 5632 6.832520 AGAGTATCAGATAAGCATGTCGAT 57.167 37.500 0.00 0.00 37.82 3.59
2678 5633 7.929941 AGAGTATCAGATAAGCATGTCGATA 57.070 36.000 0.00 0.00 37.82 2.92
2679 5634 7.984391 AGAGTATCAGATAAGCATGTCGATAG 58.016 38.462 0.00 0.00 37.82 2.08
2680 5635 7.826744 AGAGTATCAGATAAGCATGTCGATAGA 59.173 37.037 0.00 0.00 40.39 1.98
2681 5636 8.620416 GAGTATCAGATAAGCATGTCGATAGAT 58.380 37.037 0.00 0.00 41.69 1.98
2696 5651 6.641169 TCGATAGATGCTTCTAGAACACAT 57.359 37.500 14.03 13.59 42.67 3.21
2697 5652 6.442112 TCGATAGATGCTTCTAGAACACATG 58.558 40.000 17.10 3.25 42.67 3.21
2698 5653 6.263168 TCGATAGATGCTTCTAGAACACATGA 59.737 38.462 17.10 8.10 42.67 3.07
2699 5654 6.581919 CGATAGATGCTTCTAGAACACATGAG 59.418 42.308 17.10 0.00 37.86 2.90
2700 5655 5.929058 AGATGCTTCTAGAACACATGAGA 57.071 39.130 17.10 0.00 0.00 3.27
2701 5656 6.482898 AGATGCTTCTAGAACACATGAGAT 57.517 37.500 17.10 0.00 0.00 2.75
2702 5657 6.282167 AGATGCTTCTAGAACACATGAGATG 58.718 40.000 17.10 0.10 0.00 2.90
2703 5658 4.763073 TGCTTCTAGAACACATGAGATGG 58.237 43.478 0.00 0.00 33.60 3.51
2704 5659 4.223700 TGCTTCTAGAACACATGAGATGGT 59.776 41.667 0.00 0.00 33.60 3.55
2705 5660 5.422012 TGCTTCTAGAACACATGAGATGGTA 59.578 40.000 0.00 0.00 33.60 3.25
2706 5661 5.982516 GCTTCTAGAACACATGAGATGGTAG 59.017 44.000 0.00 0.00 33.60 3.18
2707 5662 6.183360 GCTTCTAGAACACATGAGATGGTAGA 60.183 42.308 0.00 0.00 33.60 2.59
2708 5663 6.951062 TCTAGAACACATGAGATGGTAGAG 57.049 41.667 0.00 0.00 33.60 2.43
2709 5664 6.427441 TCTAGAACACATGAGATGGTAGAGT 58.573 40.000 0.00 0.00 33.60 3.24
2710 5665 6.892456 TCTAGAACACATGAGATGGTAGAGTT 59.108 38.462 0.00 0.00 33.60 3.01
2711 5666 5.728471 AGAACACATGAGATGGTAGAGTTG 58.272 41.667 0.00 0.00 33.60 3.16
2712 5667 4.478206 ACACATGAGATGGTAGAGTTGG 57.522 45.455 0.00 0.00 33.60 3.77
2713 5668 3.198635 ACACATGAGATGGTAGAGTTGGG 59.801 47.826 0.00 0.00 33.60 4.12
2714 5669 2.774234 ACATGAGATGGTAGAGTTGGGG 59.226 50.000 0.00 0.00 33.60 4.96
2715 5670 1.879575 TGAGATGGTAGAGTTGGGGG 58.120 55.000 0.00 0.00 0.00 5.40
2716 5671 1.080498 TGAGATGGTAGAGTTGGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
2717 5672 2.197465 GAGATGGTAGAGTTGGGGGTT 58.803 52.381 0.00 0.00 0.00 4.11
2718 5673 2.170817 GAGATGGTAGAGTTGGGGGTTC 59.829 54.545 0.00 0.00 0.00 3.62
2719 5674 1.913419 GATGGTAGAGTTGGGGGTTCA 59.087 52.381 0.00 0.00 0.00 3.18
2720 5675 1.822425 TGGTAGAGTTGGGGGTTCAA 58.178 50.000 0.00 0.00 0.00 2.69
2721 5676 2.354328 TGGTAGAGTTGGGGGTTCAAT 58.646 47.619 0.00 0.00 0.00 2.57
2722 5677 2.719705 TGGTAGAGTTGGGGGTTCAATT 59.280 45.455 0.00 0.00 0.00 2.32
2723 5678 3.917629 TGGTAGAGTTGGGGGTTCAATTA 59.082 43.478 0.00 0.00 0.00 1.40
2724 5679 4.018779 TGGTAGAGTTGGGGGTTCAATTAG 60.019 45.833 0.00 0.00 0.00 1.73
2725 5680 4.226620 GGTAGAGTTGGGGGTTCAATTAGA 59.773 45.833 0.00 0.00 0.00 2.10
2726 5681 5.280830 GGTAGAGTTGGGGGTTCAATTAGAA 60.281 44.000 0.00 0.00 0.00 2.10
2727 5682 4.923415 AGAGTTGGGGGTTCAATTAGAAG 58.077 43.478 0.00 0.00 36.78 2.85
2728 5683 4.017126 GAGTTGGGGGTTCAATTAGAAGG 58.983 47.826 0.00 0.00 36.78 3.46
2729 5684 2.496070 GTTGGGGGTTCAATTAGAAGGC 59.504 50.000 0.00 0.00 36.78 4.35
2730 5685 1.006639 TGGGGGTTCAATTAGAAGGCC 59.993 52.381 0.00 0.00 36.78 5.19
2731 5686 1.006639 GGGGGTTCAATTAGAAGGCCA 59.993 52.381 5.01 0.00 36.78 5.36
2732 5687 2.100197 GGGGTTCAATTAGAAGGCCAC 58.900 52.381 5.01 0.00 36.78 5.01
2733 5688 1.743394 GGGTTCAATTAGAAGGCCACG 59.257 52.381 5.01 0.00 36.78 4.94
2734 5689 2.433436 GGTTCAATTAGAAGGCCACGT 58.567 47.619 5.01 0.00 36.78 4.49
2735 5690 2.161609 GGTTCAATTAGAAGGCCACGTG 59.838 50.000 9.08 9.08 36.78 4.49
2736 5691 2.107950 TCAATTAGAAGGCCACGTGG 57.892 50.000 30.66 30.66 38.53 4.94
2748 5703 1.586422 CCACGTGGCAGAATCCTATG 58.414 55.000 24.02 0.00 0.00 2.23
2749 5704 1.138859 CCACGTGGCAGAATCCTATGA 59.861 52.381 24.02 0.00 0.00 2.15
2750 5705 2.477825 CACGTGGCAGAATCCTATGAG 58.522 52.381 7.95 0.00 0.00 2.90
2751 5706 2.111384 ACGTGGCAGAATCCTATGAGT 58.889 47.619 0.00 0.00 0.00 3.41
2752 5707 2.501723 ACGTGGCAGAATCCTATGAGTT 59.498 45.455 0.00 0.00 0.00 3.01
2753 5708 2.868583 CGTGGCAGAATCCTATGAGTTG 59.131 50.000 0.00 0.00 0.00 3.16
2754 5709 3.430790 CGTGGCAGAATCCTATGAGTTGA 60.431 47.826 0.00 0.00 0.00 3.18
2755 5710 4.517285 GTGGCAGAATCCTATGAGTTGAA 58.483 43.478 0.00 0.00 0.00 2.69
2756 5711 4.943705 GTGGCAGAATCCTATGAGTTGAAA 59.056 41.667 0.00 0.00 0.00 2.69
2757 5712 5.415701 GTGGCAGAATCCTATGAGTTGAAAA 59.584 40.000 0.00 0.00 0.00 2.29
2773 5728 6.927933 GTTGAAAACTTTATCCAACGGATG 57.072 37.500 5.76 0.00 45.32 3.51
2774 5729 6.674066 GTTGAAAACTTTATCCAACGGATGA 58.326 36.000 5.76 0.00 45.32 2.92
2775 5730 7.312899 GTTGAAAACTTTATCCAACGGATGAT 58.687 34.615 5.76 0.00 45.32 2.45
2776 5731 8.455682 GTTGAAAACTTTATCCAACGGATGATA 58.544 33.333 5.76 0.00 45.32 2.15
2777 5732 8.568676 TGAAAACTTTATCCAACGGATGATAA 57.431 30.769 5.76 0.00 43.06 1.75
2778 5733 9.184523 TGAAAACTTTATCCAACGGATGATAAT 57.815 29.630 5.76 0.00 43.06 1.28
2779 5734 9.450807 GAAAACTTTATCCAACGGATGATAATG 57.549 33.333 5.76 11.17 43.06 1.90
2780 5735 6.560253 ACTTTATCCAACGGATGATAATGC 57.440 37.500 5.76 0.00 43.06 3.56
2781 5736 6.299141 ACTTTATCCAACGGATGATAATGCT 58.701 36.000 5.76 3.18 43.06 3.79
2782 5737 6.428159 ACTTTATCCAACGGATGATAATGCTC 59.572 38.462 5.76 0.00 43.06 4.26
2783 5738 2.754472 TCCAACGGATGATAATGCTCG 58.246 47.619 0.00 0.00 0.00 5.03
2784 5739 1.800586 CCAACGGATGATAATGCTCGG 59.199 52.381 0.00 0.00 0.00 4.63
2785 5740 2.547855 CCAACGGATGATAATGCTCGGA 60.548 50.000 0.00 0.00 0.00 4.55
2786 5741 3.329386 CAACGGATGATAATGCTCGGAT 58.671 45.455 0.00 0.00 0.00 4.18
2787 5742 3.685139 ACGGATGATAATGCTCGGATT 57.315 42.857 0.00 0.00 0.00 3.01
2788 5743 4.008074 ACGGATGATAATGCTCGGATTT 57.992 40.909 0.00 0.00 0.00 2.17
2789 5744 3.748048 ACGGATGATAATGCTCGGATTTG 59.252 43.478 0.00 0.00 0.00 2.32
2790 5745 3.425359 CGGATGATAATGCTCGGATTTGC 60.425 47.826 0.00 0.00 0.00 3.68
2791 5746 3.119708 GGATGATAATGCTCGGATTTGCC 60.120 47.826 0.00 0.00 0.00 4.52
2792 5747 2.929641 TGATAATGCTCGGATTTGCCA 58.070 42.857 0.00 0.00 35.94 4.92
2793 5748 3.489355 TGATAATGCTCGGATTTGCCAT 58.511 40.909 0.00 0.00 35.94 4.40
2794 5749 3.503363 TGATAATGCTCGGATTTGCCATC 59.497 43.478 0.00 0.00 35.94 3.51
2795 5750 2.062971 AATGCTCGGATTTGCCATCT 57.937 45.000 0.00 0.00 35.94 2.90
2796 5751 1.602311 ATGCTCGGATTTGCCATCTC 58.398 50.000 0.00 0.00 35.94 2.75
2797 5752 0.543277 TGCTCGGATTTGCCATCTCT 59.457 50.000 0.00 0.00 35.94 3.10
2798 5753 1.065199 TGCTCGGATTTGCCATCTCTT 60.065 47.619 0.00 0.00 35.94 2.85
2799 5754 1.332997 GCTCGGATTTGCCATCTCTTG 59.667 52.381 0.00 0.00 35.94 3.02
2800 5755 2.910199 CTCGGATTTGCCATCTCTTGA 58.090 47.619 0.00 0.00 35.94 3.02
2801 5756 2.611292 CTCGGATTTGCCATCTCTTGAC 59.389 50.000 0.00 0.00 35.94 3.18
2802 5757 1.672881 CGGATTTGCCATCTCTTGACC 59.327 52.381 0.00 0.00 35.94 4.02
2803 5758 1.672881 GGATTTGCCATCTCTTGACCG 59.327 52.381 0.00 0.00 36.34 4.79
2804 5759 2.359900 GATTTGCCATCTCTTGACCGT 58.640 47.619 0.00 0.00 0.00 4.83
2805 5760 2.270352 TTTGCCATCTCTTGACCGTT 57.730 45.000 0.00 0.00 0.00 4.44
2806 5761 1.522668 TTGCCATCTCTTGACCGTTG 58.477 50.000 0.00 0.00 0.00 4.10
2807 5762 0.321564 TGCCATCTCTTGACCGTTGG 60.322 55.000 0.00 0.00 0.00 3.77
2808 5763 0.036388 GCCATCTCTTGACCGTTGGA 60.036 55.000 0.00 0.00 0.00 3.53
2809 5764 1.407437 GCCATCTCTTGACCGTTGGAT 60.407 52.381 0.00 0.00 0.00 3.41
2810 5765 2.555199 CCATCTCTTGACCGTTGGATC 58.445 52.381 0.00 0.00 0.00 3.36
2811 5766 2.196749 CATCTCTTGACCGTTGGATCG 58.803 52.381 0.00 0.00 0.00 3.69
2819 5774 2.840974 CCGTTGGATCGGCATATCC 58.159 57.895 9.14 9.14 44.96 2.59
2824 5779 3.906660 GGATCGGCATATCCAACGA 57.093 52.632 10.81 0.00 44.26 3.85
2826 5781 2.699954 GGATCGGCATATCCAACGATT 58.300 47.619 10.81 0.00 44.99 3.34
2827 5782 3.857052 GGATCGGCATATCCAACGATTA 58.143 45.455 10.81 0.00 44.99 1.75
2828 5783 4.250464 GGATCGGCATATCCAACGATTAA 58.750 43.478 10.81 0.00 44.99 1.40
2829 5784 4.876107 GGATCGGCATATCCAACGATTAAT 59.124 41.667 10.81 0.00 44.99 1.40
2830 5785 6.046593 GGATCGGCATATCCAACGATTAATA 58.953 40.000 10.81 0.00 44.99 0.98
2831 5786 6.706270 GGATCGGCATATCCAACGATTAATAT 59.294 38.462 10.81 0.00 44.99 1.28
2832 5787 6.902224 TCGGCATATCCAACGATTAATATG 57.098 37.500 0.00 0.00 35.92 1.78
2833 5788 6.403049 TCGGCATATCCAACGATTAATATGT 58.597 36.000 0.00 0.00 35.48 2.29
2834 5789 6.312672 TCGGCATATCCAACGATTAATATGTG 59.687 38.462 0.00 0.00 35.48 3.21
2835 5790 6.456853 CGGCATATCCAACGATTAATATGTGG 60.457 42.308 0.00 4.95 35.48 4.17
2836 5791 6.597672 GGCATATCCAACGATTAATATGTGGA 59.402 38.462 13.18 13.18 35.48 4.02
2837 5792 7.201644 GGCATATCCAACGATTAATATGTGGAG 60.202 40.741 15.12 6.78 35.48 3.86
2838 5793 7.677276 GCATATCCAACGATTAATATGTGGAGC 60.677 40.741 15.12 11.05 35.48 4.70
2839 5794 5.290493 TCCAACGATTAATATGTGGAGCT 57.710 39.130 8.65 0.00 0.00 4.09
2840 5795 6.413783 TCCAACGATTAATATGTGGAGCTA 57.586 37.500 8.65 0.00 0.00 3.32
2841 5796 7.004555 TCCAACGATTAATATGTGGAGCTAT 57.995 36.000 8.65 0.00 0.00 2.97
2842 5797 7.450074 TCCAACGATTAATATGTGGAGCTATT 58.550 34.615 8.65 0.00 0.00 1.73
2843 5798 7.387673 TCCAACGATTAATATGTGGAGCTATTG 59.612 37.037 8.65 0.00 0.00 1.90
2844 5799 7.361201 CCAACGATTAATATGTGGAGCTATTGG 60.361 40.741 5.26 0.00 0.00 3.16
2845 5800 5.643777 ACGATTAATATGTGGAGCTATTGGC 59.356 40.000 0.00 0.00 42.19 4.52
2846 5801 5.643348 CGATTAATATGTGGAGCTATTGGCA 59.357 40.000 0.00 0.00 44.79 4.92
2847 5802 6.402550 CGATTAATATGTGGAGCTATTGGCAC 60.403 42.308 0.00 0.00 44.79 5.01
2848 5803 3.862877 ATATGTGGAGCTATTGGCACA 57.137 42.857 0.00 0.00 44.79 4.57
2849 5804 1.755179 ATGTGGAGCTATTGGCACAC 58.245 50.000 11.21 11.21 45.06 3.82
2850 5805 0.692476 TGTGGAGCTATTGGCACACT 59.308 50.000 16.49 0.00 45.07 3.55
2851 5806 1.905894 TGTGGAGCTATTGGCACACTA 59.094 47.619 16.49 5.31 45.07 2.74
2852 5807 2.505407 TGTGGAGCTATTGGCACACTAT 59.495 45.455 16.49 0.00 45.07 2.12
2853 5808 3.709141 TGTGGAGCTATTGGCACACTATA 59.291 43.478 16.49 0.18 45.07 1.31
2854 5809 4.347876 TGTGGAGCTATTGGCACACTATAT 59.652 41.667 16.49 0.00 45.07 0.86
2855 5810 5.542251 TGTGGAGCTATTGGCACACTATATA 59.458 40.000 16.49 0.00 45.07 0.86
2856 5811 6.102663 GTGGAGCTATTGGCACACTATATAG 58.897 44.000 8.27 8.27 43.10 1.31
2857 5812 5.780282 TGGAGCTATTGGCACACTATATAGT 59.220 40.000 9.71 9.71 44.79 2.12
2859 5814 6.042638 AGCTATTGGCACACTATATAGTGG 57.957 41.667 35.01 26.71 46.76 4.00
2860 5815 5.544176 AGCTATTGGCACACTATATAGTGGT 59.456 40.000 35.01 22.68 46.76 4.16
2861 5816 6.724441 AGCTATTGGCACACTATATAGTGGTA 59.276 38.462 35.01 20.64 46.76 3.25
2862 5817 7.400339 AGCTATTGGCACACTATATAGTGGTAT 59.600 37.037 35.01 24.08 46.76 2.73
2916 5871 2.639065 TGGTTGAACTCAGAACCACAC 58.361 47.619 0.00 0.00 45.37 3.82
2918 6046 2.614057 GGTTGAACTCAGAACCACACTG 59.386 50.000 0.00 0.00 41.24 3.66
2963 6091 5.554822 TTGCAGTTGTACTTTTTCGAACT 57.445 34.783 0.00 0.00 0.00 3.01
2973 6101 4.461198 ACTTTTTCGAACTTCATGTCCCT 58.539 39.130 0.00 0.00 0.00 4.20
2974 6102 4.887655 ACTTTTTCGAACTTCATGTCCCTT 59.112 37.500 0.00 0.00 0.00 3.95
2977 6108 3.040147 TCGAACTTCATGTCCCTTGTC 57.960 47.619 0.00 0.00 0.00 3.18
3006 6137 7.041167 GCAGTCTTGGATGCATTATGTGTTATA 60.041 37.037 0.00 0.00 42.11 0.98
3037 6168 7.452880 AGTATGAGCAAAATAACAGAAGCAA 57.547 32.000 0.00 0.00 0.00 3.91
3038 6169 7.885297 AGTATGAGCAAAATAACAGAAGCAAA 58.115 30.769 0.00 0.00 0.00 3.68
3125 6662 2.383298 TTCGTTGCAAGAAAGCTTCG 57.617 45.000 0.00 0.00 34.99 3.79
3134 6671 3.733077 GCAAGAAAGCTTCGCTGCATAAT 60.733 43.478 17.18 0.00 39.62 1.28
3256 6793 8.978874 TGTTGTGCTCATTTATTACTGGATAT 57.021 30.769 0.00 0.00 0.00 1.63
3270 6807 5.269505 ACTGGATATCTCTACAACTGTGC 57.730 43.478 2.05 0.00 0.00 4.57
3437 6981 5.054477 TCAGAAAGGTTAAACCAGTCTTCG 58.946 41.667 0.00 0.00 41.95 3.79
3631 7177 9.712305 CTAATTTGTTCTTCTTACCTTCTCTCA 57.288 33.333 0.00 0.00 0.00 3.27
3639 7185 7.334090 TCTTCTTACCTTCTCTCATCCAATTG 58.666 38.462 0.00 0.00 0.00 2.32
3684 7230 5.458891 GCCTTAAATATTGATCAGCAGCAG 58.541 41.667 0.00 0.00 0.00 4.24
3689 7235 1.541379 ATTGATCAGCAGCAGCAACA 58.459 45.000 3.17 0.00 45.49 3.33
3824 7373 8.140112 ACTCATACTGAAAGAGTGAAAGGTAT 57.860 34.615 0.00 0.00 40.83 2.73
3958 7799 1.668419 GATACGGCACAAGCATCCTT 58.332 50.000 0.00 0.00 44.61 3.36
3961 7803 1.039856 ACGGCACAAGCATCCTTTTT 58.960 45.000 0.00 0.00 44.61 1.94
4000 8230 8.789825 TGCAAAATAACTTTAATGATGCCAAT 57.210 26.923 0.00 0.00 0.00 3.16
4006 8236 9.768662 AATAACTTTAATGATGCCAATTCATCC 57.231 29.630 5.04 0.00 41.54 3.51
4017 8247 8.265764 TGATGCCAATTCATCCAAATAAAATCA 58.734 29.630 5.04 0.00 41.54 2.57
4050 8280 5.490139 CTGGTAATATGCAGTTTCCAGTG 57.510 43.478 21.96 7.93 38.54 3.66
4075 8307 5.532406 TCAAGAAAGAGATTTGTCCACTTGG 59.468 40.000 0.00 0.00 34.81 3.61
4085 8317 0.668535 GTCCACTTGGTCACTTTGCC 59.331 55.000 0.00 0.00 36.34 4.52
4125 8359 1.671979 CGTGCATGTCTCCCATTCAT 58.328 50.000 0.00 0.00 29.36 2.57
4376 8658 2.017049 ACGTAATGAAATCCTGCTGCC 58.983 47.619 0.00 0.00 0.00 4.85
4382 8664 1.953231 GAAATCCTGCTGCCCTTGCC 61.953 60.000 0.00 0.00 36.33 4.52
4402 8686 1.588824 CGCAGTTGCATGGTGTGGAT 61.589 55.000 4.84 0.00 42.21 3.41
4471 8755 3.562176 GGATGGACAGGAACAAGTGGATT 60.562 47.826 0.00 0.00 0.00 3.01
4501 8785 0.389817 TCATTGCGACCCTCGTCTTG 60.390 55.000 0.00 0.00 42.81 3.02
4582 8866 5.737063 GCCTGAATTCAGAATGTTTGTGTGT 60.737 40.000 32.49 0.00 46.59 3.72
4583 8867 5.688621 CCTGAATTCAGAATGTTTGTGTGTG 59.311 40.000 32.49 10.02 46.59 3.82
4590 8874 3.378112 AGAATGTTTGTGTGTGTGTGGAG 59.622 43.478 0.00 0.00 0.00 3.86
4600 8884 4.625742 GTGTGTGTGTGGAGTATGATGTAC 59.374 45.833 0.00 0.00 0.00 2.90
4616 8900 1.667830 TACAGCGACACTTGCCAGC 60.668 57.895 0.00 0.00 0.00 4.85
4684 8968 2.496828 AAATGCTCAGCGCCTTTGGC 62.497 55.000 2.29 2.32 46.75 4.52
4702 8986 1.403249 GGCATTCTGAAATTGCTGCGT 60.403 47.619 13.79 0.00 0.00 5.24
4703 8987 1.652124 GCATTCTGAAATTGCTGCGTG 59.348 47.619 8.37 0.00 0.00 5.34
4744 9057 4.306600 CACAAAATTTACCTGTTCTGGCC 58.693 43.478 0.00 0.00 0.00 5.36
4745 9058 3.323691 ACAAAATTTACCTGTTCTGGCCC 59.676 43.478 0.00 0.00 0.00 5.80
4746 9059 2.990740 AATTTACCTGTTCTGGCCCA 57.009 45.000 0.00 0.00 0.00 5.36
4747 9060 2.514458 ATTTACCTGTTCTGGCCCAG 57.486 50.000 3.69 3.69 0.00 4.45
4748 9061 1.440618 TTTACCTGTTCTGGCCCAGA 58.559 50.000 10.05 10.05 38.87 3.86
4749 9062 1.440618 TTACCTGTTCTGGCCCAGAA 58.559 50.000 22.25 22.25 46.50 3.02
4826 9139 9.387123 GCAAAACAAACTTAAACAAAATTCACA 57.613 25.926 0.00 0.00 0.00 3.58
4858 9171 2.561478 AGTCAACAGCAATTACGGGT 57.439 45.000 0.00 0.00 0.00 5.28
4869 9182 3.672241 GCAATTACGGGTTAAACTGGCAG 60.672 47.826 14.16 14.16 0.00 4.85
4873 9186 3.428413 ACGGGTTAAACTGGCAGTAAT 57.572 42.857 22.37 15.36 0.00 1.89
4884 9197 5.028549 ACTGGCAGTAATAGGATGAACAG 57.971 43.478 20.61 0.00 0.00 3.16
4892 9205 7.041721 CAGTAATAGGATGAACAGCAACACTA 58.958 38.462 0.00 0.00 0.00 2.74
4911 9224 5.063204 CACTACACCAATCACCAGAGAAAA 58.937 41.667 0.00 0.00 0.00 2.29
4933 9246 6.939132 AATAGATCTCCTTCACAAGCAATG 57.061 37.500 0.00 0.00 0.00 2.82
4947 9260 7.252708 TCACAAGCAATGCTAATAACTTGATG 58.747 34.615 8.68 1.05 38.25 3.07
5120 9449 7.062956 CAGCACTACAAGTTTAACATCACGATA 59.937 37.037 0.00 0.00 0.00 2.92
5179 9508 3.951775 AACACTGAAGCCAACACAAAA 57.048 38.095 0.00 0.00 0.00 2.44
5180 9509 4.470334 AACACTGAAGCCAACACAAAAT 57.530 36.364 0.00 0.00 0.00 1.82
5181 9510 5.590530 AACACTGAAGCCAACACAAAATA 57.409 34.783 0.00 0.00 0.00 1.40
5183 9512 4.037923 ACACTGAAGCCAACACAAAATAGG 59.962 41.667 0.00 0.00 0.00 2.57
5184 9513 4.278170 CACTGAAGCCAACACAAAATAGGA 59.722 41.667 0.00 0.00 0.00 2.94
5187 9516 6.041979 ACTGAAGCCAACACAAAATAGGATTT 59.958 34.615 0.00 0.00 0.00 2.17
5213 9547 1.065551 GTCCAACACTGAAGCCAACAC 59.934 52.381 0.00 0.00 0.00 3.32
5215 9549 1.066002 CCAACACTGAAGCCAACACAG 59.934 52.381 0.00 0.00 37.62 3.66
5224 9558 3.055819 TGAAGCCAACACAGAGTAGGATC 60.056 47.826 0.00 0.00 0.00 3.36
5225 9559 1.834263 AGCCAACACAGAGTAGGATCC 59.166 52.381 2.48 2.48 0.00 3.36
5226 9560 1.555075 GCCAACACAGAGTAGGATCCA 59.445 52.381 15.82 0.00 0.00 3.41
5227 9561 2.027192 GCCAACACAGAGTAGGATCCAA 60.027 50.000 15.82 0.00 0.00 3.53
5228 9562 3.559171 GCCAACACAGAGTAGGATCCAAA 60.559 47.826 15.82 0.00 0.00 3.28
5230 9564 4.878397 CCAACACAGAGTAGGATCCAAATC 59.122 45.833 15.82 8.23 0.00 2.17
5294 9768 5.079689 TGAAGAACGCACTGGTAATATCA 57.920 39.130 0.00 0.00 0.00 2.15
5306 9780 2.404215 GTAATATCAGACCACGCGCAT 58.596 47.619 5.73 0.00 0.00 4.73
5324 9798 4.478699 CGCATGAACAAACATCAACAGAT 58.521 39.130 0.00 0.00 0.00 2.90
5330 9804 5.535783 TGAACAAACATCAACAGATCCACAT 59.464 36.000 0.00 0.00 0.00 3.21
5332 9806 7.394077 TGAACAAACATCAACAGATCCACATAT 59.606 33.333 0.00 0.00 0.00 1.78
5333 9807 7.325660 ACAAACATCAACAGATCCACATATC 57.674 36.000 0.00 0.00 0.00 1.63
5337 9811 4.694760 TCAACAGATCCACATATCAGGG 57.305 45.455 0.00 0.00 0.00 4.45
5400 9883 5.639506 CCTAGTACATCCAGACAACAAACAG 59.360 44.000 0.00 0.00 0.00 3.16
5403 9886 1.270550 CATCCAGACAACAAACAGGGC 59.729 52.381 0.00 0.00 0.00 5.19
5435 9918 2.709475 GCGAGATGCGGCGATTTT 59.291 55.556 12.98 0.00 41.29 1.82
5436 9919 1.062525 GCGAGATGCGGCGATTTTT 59.937 52.632 12.98 0.00 41.29 1.94
5439 9922 1.593070 CGAGATGCGGCGATTTTTCAG 60.593 52.381 12.98 0.00 36.03 3.02
5440 9923 1.665679 GAGATGCGGCGATTTTTCAGA 59.334 47.619 12.98 0.00 0.00 3.27
5441 9924 1.398390 AGATGCGGCGATTTTTCAGAC 59.602 47.619 12.98 0.00 0.00 3.51
5442 9925 0.451783 ATGCGGCGATTTTTCAGACC 59.548 50.000 12.98 0.00 0.00 3.85
5443 9926 1.136774 GCGGCGATTTTTCAGACCC 59.863 57.895 12.98 0.00 0.00 4.46
5455 9938 2.116772 AGACCCGAGGACCACGAA 59.883 61.111 13.31 0.00 0.00 3.85
5463 9946 0.601558 GAGGACCACGAACACTGCTA 59.398 55.000 0.00 0.00 0.00 3.49
5469 9952 2.030185 ACCACGAACACTGCTAGTACTG 60.030 50.000 5.39 0.00 0.00 2.74
5470 9953 2.030185 CCACGAACACTGCTAGTACTGT 60.030 50.000 5.39 0.00 0.00 3.55
5484 9967 4.660789 AGTACTGTACCAAACAACGACT 57.339 40.909 14.05 0.00 37.74 4.18
5485 9968 5.772825 AGTACTGTACCAAACAACGACTA 57.227 39.130 14.05 0.00 37.74 2.59
5488 9971 4.563061 ACTGTACCAAACAACGACTATCC 58.437 43.478 0.00 0.00 37.74 2.59
5489 9972 3.577667 TGTACCAAACAACGACTATCCG 58.422 45.455 0.00 0.00 34.29 4.18
5491 9974 1.345415 ACCAAACAACGACTATCCGGT 59.655 47.619 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 2.775890 CCCACCAATGATGCTAGCTAG 58.224 52.381 16.84 16.84 0.00 3.42
122 123 1.202806 GCCCACCAATGATGCTAGCTA 60.203 52.381 17.23 2.58 0.00 3.32
123 124 0.466922 GCCCACCAATGATGCTAGCT 60.467 55.000 17.23 0.83 0.00 3.32
124 125 1.789078 CGCCCACCAATGATGCTAGC 61.789 60.000 8.10 8.10 0.00 3.42
190 191 5.385198 ACATAGACAAACCACAACCAGATT 58.615 37.500 0.00 0.00 0.00 2.40
251 252 1.298859 AACCGCCGCTGATGAAGAAC 61.299 55.000 0.00 0.00 0.00 3.01
275 276 2.646175 TAGGACCAGCGCACCAGAC 61.646 63.158 11.47 0.00 0.00 3.51
413 414 1.191535 CAGATCCGTAGACCACCCAA 58.808 55.000 0.00 0.00 0.00 4.12
415 416 0.396695 TCCAGATCCGTAGACCACCC 60.397 60.000 0.00 0.00 0.00 4.61
443 444 8.177663 CAGTGCAACCAACACTAGAAATAATAG 58.822 37.037 0.00 0.00 46.44 1.73
460 461 4.697514 TCTTCTATCATAGCAGTGCAACC 58.302 43.478 19.20 0.00 37.80 3.77
526 527 0.181350 CATTACAGGAGGGGAGTGCC 59.819 60.000 0.00 0.00 0.00 5.01
527 528 0.912486 ACATTACAGGAGGGGAGTGC 59.088 55.000 0.00 0.00 0.00 4.40
528 529 4.837093 TTTACATTACAGGAGGGGAGTG 57.163 45.455 0.00 0.00 0.00 3.51
529 530 5.853572 TTTTTACATTACAGGAGGGGAGT 57.146 39.130 0.00 0.00 0.00 3.85
548 549 0.491823 CCCCTTTCCCCCTCCTTTTT 59.508 55.000 0.00 0.00 0.00 1.94
549 550 1.452226 CCCCCTTTCCCCCTCCTTTT 61.452 60.000 0.00 0.00 0.00 2.27
550 551 1.862138 CCCCCTTTCCCCCTCCTTT 60.862 63.158 0.00 0.00 0.00 3.11
551 552 2.204464 CCCCCTTTCCCCCTCCTT 60.204 66.667 0.00 0.00 0.00 3.36
552 553 3.563377 ACCCCCTTTCCCCCTCCT 61.563 66.667 0.00 0.00 0.00 3.69
553 554 3.347590 CACCCCCTTTCCCCCTCC 61.348 72.222 0.00 0.00 0.00 4.30
554 555 3.347590 CCACCCCCTTTCCCCCTC 61.348 72.222 0.00 0.00 0.00 4.30
557 558 3.347590 CTCCCACCCCCTTTCCCC 61.348 72.222 0.00 0.00 0.00 4.81
558 559 2.534533 ACTCCCACCCCCTTTCCC 60.535 66.667 0.00 0.00 0.00 3.97
559 560 1.850755 TCACTCCCACCCCCTTTCC 60.851 63.158 0.00 0.00 0.00 3.13
560 561 1.379146 GTCACTCCCACCCCCTTTC 59.621 63.158 0.00 0.00 0.00 2.62
561 562 2.526046 CGTCACTCCCACCCCCTTT 61.526 63.158 0.00 0.00 0.00 3.11
562 563 2.928396 CGTCACTCCCACCCCCTT 60.928 66.667 0.00 0.00 0.00 3.95
565 566 4.016706 CACCGTCACTCCCACCCC 62.017 72.222 0.00 0.00 0.00 4.95
566 567 2.291043 ATCACCGTCACTCCCACCC 61.291 63.158 0.00 0.00 0.00 4.61
572 573 0.670546 CACCACCATCACCGTCACTC 60.671 60.000 0.00 0.00 0.00 3.51
617 618 4.722526 TCTCATCTTCCCCTCTCTCTAG 57.277 50.000 0.00 0.00 0.00 2.43
645 646 4.271049 CGTTTGCACTAGGAATCGAATGAT 59.729 41.667 0.00 0.00 39.63 2.45
646 647 3.616821 CGTTTGCACTAGGAATCGAATGA 59.383 43.478 0.00 0.00 39.63 2.57
690 691 5.519927 CGCCAAATTTGAGAGTGTTCTTTTT 59.480 36.000 19.86 0.00 32.53 1.94
691 692 5.043248 CGCCAAATTTGAGAGTGTTCTTTT 58.957 37.500 19.86 0.00 32.53 2.27
692 693 4.499696 CCGCCAAATTTGAGAGTGTTCTTT 60.500 41.667 19.86 0.00 32.53 2.52
698 699 0.109132 GCCCGCCAAATTTGAGAGTG 60.109 55.000 19.86 9.29 0.00 3.51
733 734 1.561076 TGATGGATGTGTCCCTTGAGG 59.439 52.381 0.00 0.00 44.41 3.86
734 735 2.238144 ACTGATGGATGTGTCCCTTGAG 59.762 50.000 0.00 0.00 44.41 3.02
735 736 2.237143 GACTGATGGATGTGTCCCTTGA 59.763 50.000 0.00 0.00 44.41 3.02
736 737 2.636830 GACTGATGGATGTGTCCCTTG 58.363 52.381 0.00 0.00 44.41 3.61
737 738 1.208052 CGACTGATGGATGTGTCCCTT 59.792 52.381 0.00 0.00 44.41 3.95
739 740 0.537188 ACGACTGATGGATGTGTCCC 59.463 55.000 0.00 0.00 44.41 4.46
741 742 2.534298 CTGACGACTGATGGATGTGTC 58.466 52.381 0.00 0.00 0.00 3.67
743 744 1.284657 GCTGACGACTGATGGATGTG 58.715 55.000 0.00 0.00 0.00 3.21
744 745 0.179127 CGCTGACGACTGATGGATGT 60.179 55.000 0.00 0.00 43.93 3.06
792 793 0.599728 CCAAACCAATGCAACCGGTG 60.600 55.000 8.52 3.35 31.94 4.94
793 794 1.045911 ACCAAACCAATGCAACCGGT 61.046 50.000 0.00 0.00 33.32 5.28
794 795 0.105778 AACCAAACCAATGCAACCGG 59.894 50.000 0.00 0.00 0.00 5.28
795 796 1.496934 GAACCAAACCAATGCAACCG 58.503 50.000 0.00 0.00 0.00 4.44
796 797 1.877637 GGAACCAAACCAATGCAACC 58.122 50.000 0.00 0.00 0.00 3.77
899 903 2.366570 GGGGAGGAGAGCTGAGGT 59.633 66.667 0.00 0.00 0.00 3.85
901 905 1.457455 GAGGGGGAGGAGAGCTGAG 60.457 68.421 0.00 0.00 0.00 3.35
902 906 2.693017 GAGGGGGAGGAGAGCTGA 59.307 66.667 0.00 0.00 0.00 4.26
903 907 2.655077 ATCGAGGGGGAGGAGAGCTG 62.655 65.000 0.00 0.00 0.00 4.24
904 908 1.955458 AATCGAGGGGGAGGAGAGCT 61.955 60.000 0.00 0.00 0.00 4.09
905 909 1.458588 AATCGAGGGGGAGGAGAGC 60.459 63.158 0.00 0.00 0.00 4.09
906 910 0.830023 GGAATCGAGGGGGAGGAGAG 60.830 65.000 0.00 0.00 0.00 3.20
907 911 1.233369 GGAATCGAGGGGGAGGAGA 59.767 63.158 0.00 0.00 0.00 3.71
908 912 2.203771 CGGAATCGAGGGGGAGGAG 61.204 68.421 0.00 0.00 39.00 3.69
909 913 2.123425 CGGAATCGAGGGGGAGGA 60.123 66.667 0.00 0.00 39.00 3.71
910 914 3.930012 GCGGAATCGAGGGGGAGG 61.930 72.222 0.00 0.00 39.00 4.30
911 915 3.930012 GGCGGAATCGAGGGGGAG 61.930 72.222 0.00 0.00 39.00 4.30
1178 1193 1.943340 GCTTCTTATCTGGCGAAAGGG 59.057 52.381 0.00 0.00 0.00 3.95
1181 1196 2.009774 GCTGCTTCTTATCTGGCGAAA 58.990 47.619 0.00 0.00 0.00 3.46
1305 3861 2.789409 AGCTAGCCAAACGGAAATCT 57.211 45.000 12.13 0.00 0.00 2.40
1312 3868 0.108520 TACGGGAAGCTAGCCAAACG 60.109 55.000 12.13 13.98 0.00 3.60
1321 3877 0.748729 CTCCTCGTCTACGGGAAGCT 60.749 60.000 3.45 0.00 43.86 3.74
1367 3930 1.743394 GAAATTGGAGGCACGGTTAGG 59.257 52.381 0.00 0.00 0.00 2.69
1471 4034 4.281182 TCAGACTTGTACTCCCTCAGTTTC 59.719 45.833 0.00 0.00 36.43 2.78
1595 4158 2.363925 GGGTAGGGAGCTCACCGT 60.364 66.667 13.73 1.63 32.84 4.83
1635 4198 8.446273 GTGGTCACATGCAATATACATAAGATC 58.554 37.037 0.00 0.00 0.00 2.75
1673 4387 2.553602 CACCACAGCAGCAAAATCTGTA 59.446 45.455 0.00 0.00 38.85 2.74
1693 4407 1.138859 CTGAGGGAACACACAGACACA 59.861 52.381 0.00 0.00 32.70 3.72
1694 4408 1.541233 CCTGAGGGAACACACAGACAC 60.541 57.143 3.29 0.00 32.70 3.67
1695 4409 0.758734 CCTGAGGGAACACACAGACA 59.241 55.000 3.29 0.00 32.70 3.41
1696 4410 1.048601 TCCTGAGGGAACACACAGAC 58.951 55.000 0.00 0.00 38.93 3.51
1697 4411 1.801242 TTCCTGAGGGAACACACAGA 58.199 50.000 0.00 0.00 45.72 3.41
1705 4419 6.495415 CAGACACACTGTTTCCTGAGGGAA 62.495 50.000 0.00 0.00 43.49 3.97
1706 4420 1.416401 GACACACTGTTTCCTGAGGGA 59.584 52.381 0.00 0.00 40.36 4.20
1707 4421 1.417890 AGACACACTGTTTCCTGAGGG 59.582 52.381 0.00 0.00 0.00 4.30
1708 4422 2.487934 CAGACACACTGTTTCCTGAGG 58.512 52.381 0.00 0.00 41.30 3.86
1738 4478 3.067106 ACACAGACACGCTATTTTCTGG 58.933 45.455 2.75 0.00 39.91 3.86
1883 4625 3.759581 ACTCACAGCATGAAATCCAACT 58.240 40.909 0.00 0.00 39.69 3.16
1893 4635 0.607217 TGGGCTCAACTCACAGCATG 60.607 55.000 0.00 0.00 46.00 4.06
1894 4636 0.330604 ATGGGCTCAACTCACAGCAT 59.669 50.000 0.00 0.00 37.38 3.79
1919 4661 1.268386 GGAATGCACATGCTGACATCG 60.268 52.381 5.31 0.00 42.66 3.84
1973 4715 3.892588 ACACCATCAAACGGGTAAACAAT 59.107 39.130 0.00 0.00 35.09 2.71
1979 4721 4.354893 AAACTACACCATCAAACGGGTA 57.645 40.909 0.00 0.00 35.09 3.69
2013 4755 6.808008 ATCAGAAACACAGGAACTAACATG 57.192 37.500 0.00 0.00 36.02 3.21
2049 4791 9.392259 CCATACAGCATCATTCAATATCATAGT 57.608 33.333 0.00 0.00 0.00 2.12
2072 4814 6.491062 GGTAACCAAGTTAACCAACTAACCAT 59.509 38.462 0.88 0.00 44.41 3.55
2105 4848 0.988145 ATTCATCCCAGCTTCCCCGA 60.988 55.000 0.00 0.00 0.00 5.14
2159 4903 8.601047 TGATCCCAAAATCCACAATATTTACA 57.399 30.769 0.00 0.00 0.00 2.41
2184 4928 4.763793 AGTCTTACAATGTCAAGCATGCTT 59.236 37.500 27.21 27.21 37.96 3.91
2220 4964 1.539827 GTTGCACTGTAACCCATCCAC 59.460 52.381 0.00 0.00 0.00 4.02
2362 5110 6.094881 CCGACTAAAACCATCACAAACCATAT 59.905 38.462 0.00 0.00 0.00 1.78
2368 5116 5.856156 TCTACCGACTAAAACCATCACAAA 58.144 37.500 0.00 0.00 0.00 2.83
2401 5149 8.682128 TAACTGAAGTTCAACAAACATTGTTC 57.318 30.769 7.06 0.00 43.91 3.18
2446 5194 7.380065 GCATGTATCTAGACTTAACTACAGTGC 59.620 40.741 0.00 7.38 0.00 4.40
2495 5450 5.467399 TGCAAAGCACGTACAATTTACTAGT 59.533 36.000 0.00 0.00 31.71 2.57
2496 5451 5.922546 TGCAAAGCACGTACAATTTACTAG 58.077 37.500 0.00 0.00 31.71 2.57
2497 5452 5.926214 TGCAAAGCACGTACAATTTACTA 57.074 34.783 0.00 0.00 31.71 1.82
2498 5453 4.822036 TGCAAAGCACGTACAATTTACT 57.178 36.364 0.00 0.00 31.71 2.24
2510 5465 4.444056 ACATTTAAATGACGTGCAAAGCAC 59.556 37.500 30.18 11.86 45.66 4.40
2511 5466 4.615949 ACATTTAAATGACGTGCAAAGCA 58.384 34.783 30.18 0.00 39.67 3.91
2512 5467 6.869421 ATACATTTAAATGACGTGCAAAGC 57.131 33.333 30.18 0.00 39.67 3.51
2536 5491 9.956640 TCAAATGTATTTTCCCATGCTTTTTAT 57.043 25.926 0.00 0.00 0.00 1.40
2537 5492 9.784531 TTCAAATGTATTTTCCCATGCTTTTTA 57.215 25.926 0.00 0.00 0.00 1.52
2538 5493 8.688747 TTCAAATGTATTTTCCCATGCTTTTT 57.311 26.923 0.00 0.00 0.00 1.94
2539 5494 8.866970 ATTCAAATGTATTTTCCCATGCTTTT 57.133 26.923 0.00 0.00 0.00 2.27
2541 5496 9.550406 CATATTCAAATGTATTTTCCCATGCTT 57.450 29.630 0.00 0.00 0.00 3.91
2542 5497 8.707449 ACATATTCAAATGTATTTTCCCATGCT 58.293 29.630 0.00 0.00 38.31 3.79
2543 5498 8.891671 ACATATTCAAATGTATTTTCCCATGC 57.108 30.769 0.00 0.00 38.31 4.06
2566 5521 9.542462 CAATACGATTCTAGGAAAGGAAATACA 57.458 33.333 0.00 0.00 0.00 2.29
2567 5522 8.989980 CCAATACGATTCTAGGAAAGGAAATAC 58.010 37.037 0.00 0.00 0.00 1.89
2568 5523 8.930527 TCCAATACGATTCTAGGAAAGGAAATA 58.069 33.333 0.00 0.00 0.00 1.40
2569 5524 7.715686 GTCCAATACGATTCTAGGAAAGGAAAT 59.284 37.037 0.00 0.00 0.00 2.17
2570 5525 7.046033 GTCCAATACGATTCTAGGAAAGGAAA 58.954 38.462 0.00 0.00 0.00 3.13
2571 5526 6.155565 TGTCCAATACGATTCTAGGAAAGGAA 59.844 38.462 0.00 0.00 0.00 3.36
2572 5527 5.659525 TGTCCAATACGATTCTAGGAAAGGA 59.340 40.000 0.00 0.00 0.00 3.36
2573 5528 5.914033 TGTCCAATACGATTCTAGGAAAGG 58.086 41.667 0.00 0.00 0.00 3.11
2574 5529 7.265673 TCTTGTCCAATACGATTCTAGGAAAG 58.734 38.462 0.00 0.00 0.00 2.62
2575 5530 7.177832 TCTTGTCCAATACGATTCTAGGAAA 57.822 36.000 0.00 0.00 0.00 3.13
2576 5531 6.785337 TCTTGTCCAATACGATTCTAGGAA 57.215 37.500 0.00 0.00 0.00 3.36
2577 5532 6.015350 GGATCTTGTCCAATACGATTCTAGGA 60.015 42.308 0.00 0.00 46.96 2.94
2578 5533 6.159988 GGATCTTGTCCAATACGATTCTAGG 58.840 44.000 0.00 0.00 46.96 3.02
2592 5547 3.756117 AGAACCAAGTTGGATCTTGTCC 58.244 45.455 28.80 3.59 45.92 4.02
2609 5564 7.833285 ATCTGGATTCTAGAGAGGTAAGAAC 57.167 40.000 5.92 0.00 32.38 3.01
2610 5565 7.841729 ACAATCTGGATTCTAGAGAGGTAAGAA 59.158 37.037 5.92 0.00 34.00 2.52
2611 5566 7.358263 ACAATCTGGATTCTAGAGAGGTAAGA 58.642 38.462 5.92 0.00 0.00 2.10
2612 5567 7.595819 ACAATCTGGATTCTAGAGAGGTAAG 57.404 40.000 5.92 0.00 0.00 2.34
2613 5568 7.841729 AGAACAATCTGGATTCTAGAGAGGTAA 59.158 37.037 5.92 0.00 33.59 2.85
2614 5569 7.358263 AGAACAATCTGGATTCTAGAGAGGTA 58.642 38.462 5.92 0.00 33.59 3.08
2615 5570 6.201591 AGAACAATCTGGATTCTAGAGAGGT 58.798 40.000 5.92 0.00 33.59 3.85
2616 5571 6.729690 AGAACAATCTGGATTCTAGAGAGG 57.270 41.667 5.92 0.93 33.59 3.69
2622 5577 6.444704 AGGGACTAGAACAATCTGGATTCTA 58.555 40.000 0.00 0.00 37.58 2.10
2623 5578 5.284582 AGGGACTAGAACAATCTGGATTCT 58.715 41.667 0.00 0.00 37.58 2.40
2624 5579 5.622346 AGGGACTAGAACAATCTGGATTC 57.378 43.478 0.00 0.00 37.58 2.52
2625 5580 6.394345 AAAGGGACTAGAACAATCTGGATT 57.606 37.500 0.00 0.00 38.49 3.01
2626 5581 6.394345 AAAAGGGACTAGAACAATCTGGAT 57.606 37.500 0.00 0.00 38.49 3.41
2627 5582 5.843019 AAAAGGGACTAGAACAATCTGGA 57.157 39.130 0.00 0.00 38.49 3.86
2628 5583 8.581253 AATAAAAAGGGACTAGAACAATCTGG 57.419 34.615 0.00 0.00 38.49 3.86
2650 5605 9.449719 TCGACATGCTTATCTGATACTCTAATA 57.550 33.333 0.00 0.00 0.00 0.98
2651 5606 8.341892 TCGACATGCTTATCTGATACTCTAAT 57.658 34.615 0.00 0.00 0.00 1.73
2652 5607 7.745620 TCGACATGCTTATCTGATACTCTAA 57.254 36.000 0.00 0.00 0.00 2.10
2653 5608 7.929941 ATCGACATGCTTATCTGATACTCTA 57.070 36.000 0.00 0.00 0.00 2.43
2654 5609 6.832520 ATCGACATGCTTATCTGATACTCT 57.167 37.500 0.00 0.00 0.00 3.24
2655 5610 7.980062 TCTATCGACATGCTTATCTGATACTC 58.020 38.462 0.00 0.00 0.00 2.59
2656 5611 7.929941 TCTATCGACATGCTTATCTGATACT 57.070 36.000 0.00 0.00 0.00 2.12
2657 5612 7.167302 GCATCTATCGACATGCTTATCTGATAC 59.833 40.741 15.35 0.00 41.93 2.24
2658 5613 7.199078 GCATCTATCGACATGCTTATCTGATA 58.801 38.462 15.35 0.00 41.93 2.15
2659 5614 6.041511 GCATCTATCGACATGCTTATCTGAT 58.958 40.000 15.35 0.00 41.93 2.90
2660 5615 5.405797 GCATCTATCGACATGCTTATCTGA 58.594 41.667 15.35 0.00 41.93 3.27
2661 5616 5.699438 GCATCTATCGACATGCTTATCTG 57.301 43.478 15.35 0.00 41.93 2.90
2668 5623 5.053140 TCTAGAAGCATCTATCGACATGC 57.947 43.478 14.98 14.98 44.96 4.06
2669 5624 6.362016 GTGTTCTAGAAGCATCTATCGACATG 59.638 42.308 5.12 0.00 37.52 3.21
2670 5625 6.039829 TGTGTTCTAGAAGCATCTATCGACAT 59.960 38.462 5.12 0.00 37.52 3.06
2671 5626 5.357032 TGTGTTCTAGAAGCATCTATCGACA 59.643 40.000 5.12 2.77 37.52 4.35
2672 5627 5.822278 TGTGTTCTAGAAGCATCTATCGAC 58.178 41.667 5.12 0.33 37.52 4.20
2673 5628 6.263168 TCATGTGTTCTAGAAGCATCTATCGA 59.737 38.462 15.65 9.58 37.52 3.59
2674 5629 6.442112 TCATGTGTTCTAGAAGCATCTATCG 58.558 40.000 15.65 7.99 37.52 2.92
2675 5630 7.656412 TCTCATGTGTTCTAGAAGCATCTATC 58.344 38.462 15.65 0.37 37.52 2.08
2676 5631 7.594351 TCTCATGTGTTCTAGAAGCATCTAT 57.406 36.000 15.65 7.51 37.52 1.98
2677 5632 7.432059 CATCTCATGTGTTCTAGAAGCATCTA 58.568 38.462 15.65 0.00 37.10 1.98
2678 5633 5.929058 TCTCATGTGTTCTAGAAGCATCT 57.071 39.130 15.65 0.00 39.82 2.90
2679 5634 5.466058 CCATCTCATGTGTTCTAGAAGCATC 59.534 44.000 15.65 2.53 0.00 3.91
2680 5635 5.104610 ACCATCTCATGTGTTCTAGAAGCAT 60.105 40.000 5.12 10.60 0.00 3.79
2681 5636 4.223700 ACCATCTCATGTGTTCTAGAAGCA 59.776 41.667 5.12 8.67 0.00 3.91
2682 5637 4.764172 ACCATCTCATGTGTTCTAGAAGC 58.236 43.478 5.12 2.75 0.00 3.86
2683 5638 7.068103 ACTCTACCATCTCATGTGTTCTAGAAG 59.932 40.741 5.12 0.00 0.00 2.85
2684 5639 6.892456 ACTCTACCATCTCATGTGTTCTAGAA 59.108 38.462 0.00 0.00 0.00 2.10
2685 5640 6.427441 ACTCTACCATCTCATGTGTTCTAGA 58.573 40.000 0.00 0.00 0.00 2.43
2686 5641 6.707440 ACTCTACCATCTCATGTGTTCTAG 57.293 41.667 0.00 0.00 0.00 2.43
2687 5642 6.127338 CCAACTCTACCATCTCATGTGTTCTA 60.127 42.308 0.00 0.00 0.00 2.10
2688 5643 5.337894 CCAACTCTACCATCTCATGTGTTCT 60.338 44.000 0.00 0.00 0.00 3.01
2689 5644 4.872691 CCAACTCTACCATCTCATGTGTTC 59.127 45.833 0.00 0.00 0.00 3.18
2690 5645 4.323792 CCCAACTCTACCATCTCATGTGTT 60.324 45.833 0.00 0.00 0.00 3.32
2691 5646 3.198635 CCCAACTCTACCATCTCATGTGT 59.801 47.826 0.00 0.00 0.00 3.72
2692 5647 3.432749 CCCCAACTCTACCATCTCATGTG 60.433 52.174 0.00 0.00 0.00 3.21
2693 5648 2.774234 CCCCAACTCTACCATCTCATGT 59.226 50.000 0.00 0.00 0.00 3.21
2694 5649 2.105477 CCCCCAACTCTACCATCTCATG 59.895 54.545 0.00 0.00 0.00 3.07
2695 5650 2.293856 ACCCCCAACTCTACCATCTCAT 60.294 50.000 0.00 0.00 0.00 2.90
2696 5651 1.080498 ACCCCCAACTCTACCATCTCA 59.920 52.381 0.00 0.00 0.00 3.27
2697 5652 1.880941 ACCCCCAACTCTACCATCTC 58.119 55.000 0.00 0.00 0.00 2.75
2698 5653 2.197465 GAACCCCCAACTCTACCATCT 58.803 52.381 0.00 0.00 0.00 2.90
2699 5654 1.913419 TGAACCCCCAACTCTACCATC 59.087 52.381 0.00 0.00 0.00 3.51
2700 5655 2.053747 TGAACCCCCAACTCTACCAT 57.946 50.000 0.00 0.00 0.00 3.55
2701 5656 1.822425 TTGAACCCCCAACTCTACCA 58.178 50.000 0.00 0.00 0.00 3.25
2702 5657 3.451402 AATTGAACCCCCAACTCTACC 57.549 47.619 0.00 0.00 0.00 3.18
2703 5658 5.431179 TCTAATTGAACCCCCAACTCTAC 57.569 43.478 0.00 0.00 0.00 2.59
2704 5659 5.045140 CCTTCTAATTGAACCCCCAACTCTA 60.045 44.000 0.00 0.00 0.00 2.43
2705 5660 4.263949 CCTTCTAATTGAACCCCCAACTCT 60.264 45.833 0.00 0.00 0.00 3.24
2706 5661 4.017126 CCTTCTAATTGAACCCCCAACTC 58.983 47.826 0.00 0.00 0.00 3.01
2707 5662 3.817931 GCCTTCTAATTGAACCCCCAACT 60.818 47.826 0.00 0.00 0.00 3.16
2708 5663 2.496070 GCCTTCTAATTGAACCCCCAAC 59.504 50.000 0.00 0.00 0.00 3.77
2709 5664 2.558800 GGCCTTCTAATTGAACCCCCAA 60.559 50.000 0.00 0.00 0.00 4.12
2710 5665 1.006639 GGCCTTCTAATTGAACCCCCA 59.993 52.381 0.00 0.00 0.00 4.96
2711 5666 1.006639 TGGCCTTCTAATTGAACCCCC 59.993 52.381 3.32 0.00 0.00 5.40
2712 5667 2.100197 GTGGCCTTCTAATTGAACCCC 58.900 52.381 3.32 0.00 0.00 4.95
2713 5668 1.743394 CGTGGCCTTCTAATTGAACCC 59.257 52.381 3.32 0.00 0.00 4.11
2714 5669 2.161609 CACGTGGCCTTCTAATTGAACC 59.838 50.000 7.95 0.00 0.00 3.62
2715 5670 2.161609 CCACGTGGCCTTCTAATTGAAC 59.838 50.000 24.02 0.00 0.00 3.18
2716 5671 2.432444 CCACGTGGCCTTCTAATTGAA 58.568 47.619 24.02 0.00 0.00 2.69
2717 5672 2.107950 CCACGTGGCCTTCTAATTGA 57.892 50.000 24.02 0.00 0.00 2.57
2729 5684 1.138859 TCATAGGATTCTGCCACGTGG 59.861 52.381 30.66 30.66 38.53 4.94
2730 5685 2.159043 ACTCATAGGATTCTGCCACGTG 60.159 50.000 9.08 9.08 0.00 4.49
2731 5686 2.111384 ACTCATAGGATTCTGCCACGT 58.889 47.619 0.00 0.00 0.00 4.49
2732 5687 2.868583 CAACTCATAGGATTCTGCCACG 59.131 50.000 0.00 0.00 0.00 4.94
2733 5688 4.142609 TCAACTCATAGGATTCTGCCAC 57.857 45.455 0.00 0.00 0.00 5.01
2734 5689 4.842531 TTCAACTCATAGGATTCTGCCA 57.157 40.909 0.00 0.00 0.00 4.92
2735 5690 5.649831 AGTTTTCAACTCATAGGATTCTGCC 59.350 40.000 0.00 0.00 37.02 4.85
2736 5691 6.749923 AGTTTTCAACTCATAGGATTCTGC 57.250 37.500 0.00 0.00 37.02 4.26
2740 5695 9.753674 TGGATAAAGTTTTCAACTCATAGGATT 57.246 29.630 0.00 0.00 41.91 3.01
2741 5696 9.753674 TTGGATAAAGTTTTCAACTCATAGGAT 57.246 29.630 0.00 0.00 41.91 3.24
2742 5697 9.010029 GTTGGATAAAGTTTTCAACTCATAGGA 57.990 33.333 15.65 0.00 41.91 2.94
2743 5698 7.962918 CGTTGGATAAAGTTTTCAACTCATAGG 59.037 37.037 18.31 6.46 41.91 2.57
2744 5699 7.962918 CCGTTGGATAAAGTTTTCAACTCATAG 59.037 37.037 18.31 8.97 41.91 2.23
2745 5700 7.662258 TCCGTTGGATAAAGTTTTCAACTCATA 59.338 33.333 18.31 6.58 41.91 2.15
2746 5701 6.488683 TCCGTTGGATAAAGTTTTCAACTCAT 59.511 34.615 18.31 0.00 41.91 2.90
2747 5702 5.823570 TCCGTTGGATAAAGTTTTCAACTCA 59.176 36.000 18.31 8.66 41.91 3.41
2748 5703 6.308371 TCCGTTGGATAAAGTTTTCAACTC 57.692 37.500 18.31 2.51 41.91 3.01
2749 5704 6.488683 TCATCCGTTGGATAAAGTTTTCAACT 59.511 34.615 18.31 0.00 40.98 3.16
2750 5705 6.674066 TCATCCGTTGGATAAAGTTTTCAAC 58.326 36.000 14.10 14.10 40.98 3.18
2751 5706 6.885952 TCATCCGTTGGATAAAGTTTTCAA 57.114 33.333 0.00 0.00 40.98 2.69
2752 5707 8.568676 TTATCATCCGTTGGATAAAGTTTTCA 57.431 30.769 0.00 0.00 40.98 2.69
2753 5708 9.450807 CATTATCATCCGTTGGATAAAGTTTTC 57.549 33.333 0.00 0.00 40.98 2.29
2754 5709 7.920682 GCATTATCATCCGTTGGATAAAGTTTT 59.079 33.333 0.00 0.00 40.98 2.43
2755 5710 7.285401 AGCATTATCATCCGTTGGATAAAGTTT 59.715 33.333 0.00 0.00 40.98 2.66
2756 5711 6.772716 AGCATTATCATCCGTTGGATAAAGTT 59.227 34.615 0.00 0.00 40.98 2.66
2757 5712 6.299141 AGCATTATCATCCGTTGGATAAAGT 58.701 36.000 0.00 0.00 40.98 2.66
2758 5713 6.401474 CGAGCATTATCATCCGTTGGATAAAG 60.401 42.308 0.00 0.00 40.98 1.85
2759 5714 5.408299 CGAGCATTATCATCCGTTGGATAAA 59.592 40.000 0.00 0.00 40.98 1.40
2760 5715 4.929211 CGAGCATTATCATCCGTTGGATAA 59.071 41.667 0.00 0.00 40.98 1.75
2761 5716 4.494484 CGAGCATTATCATCCGTTGGATA 58.506 43.478 0.00 0.00 40.98 2.59
2762 5717 3.329386 CGAGCATTATCATCCGTTGGAT 58.671 45.455 0.00 0.00 44.21 3.41
2763 5718 2.547855 CCGAGCATTATCATCCGTTGGA 60.548 50.000 0.00 0.00 35.55 3.53
2764 5719 1.800586 CCGAGCATTATCATCCGTTGG 59.199 52.381 0.00 0.00 0.00 3.77
2765 5720 2.754472 TCCGAGCATTATCATCCGTTG 58.246 47.619 0.00 0.00 0.00 4.10
2766 5721 3.685139 ATCCGAGCATTATCATCCGTT 57.315 42.857 0.00 0.00 0.00 4.44
2767 5722 3.685139 AATCCGAGCATTATCATCCGT 57.315 42.857 0.00 0.00 0.00 4.69
2768 5723 3.425359 GCAAATCCGAGCATTATCATCCG 60.425 47.826 0.00 0.00 0.00 4.18
2769 5724 3.119708 GGCAAATCCGAGCATTATCATCC 60.120 47.826 0.00 0.00 0.00 3.51
2770 5725 3.503363 TGGCAAATCCGAGCATTATCATC 59.497 43.478 0.00 0.00 37.80 2.92
2771 5726 3.489355 TGGCAAATCCGAGCATTATCAT 58.511 40.909 0.00 0.00 37.80 2.45
2772 5727 2.929641 TGGCAAATCCGAGCATTATCA 58.070 42.857 0.00 0.00 37.80 2.15
2773 5728 3.755378 AGATGGCAAATCCGAGCATTATC 59.245 43.478 0.00 0.00 37.80 1.75
2774 5729 3.755378 GAGATGGCAAATCCGAGCATTAT 59.245 43.478 0.00 0.00 37.80 1.28
2775 5730 3.141398 GAGATGGCAAATCCGAGCATTA 58.859 45.455 0.00 0.00 37.80 1.90
2776 5731 1.952296 GAGATGGCAAATCCGAGCATT 59.048 47.619 0.00 0.00 37.80 3.56
2777 5732 1.142465 AGAGATGGCAAATCCGAGCAT 59.858 47.619 0.00 0.00 37.80 3.79
2778 5733 0.543277 AGAGATGGCAAATCCGAGCA 59.457 50.000 0.00 0.00 37.80 4.26
2779 5734 1.332997 CAAGAGATGGCAAATCCGAGC 59.667 52.381 0.00 0.00 37.80 5.03
2780 5735 2.611292 GTCAAGAGATGGCAAATCCGAG 59.389 50.000 0.00 0.00 37.80 4.63
2781 5736 2.632377 GTCAAGAGATGGCAAATCCGA 58.368 47.619 0.00 0.00 37.80 4.55
2782 5737 1.672881 GGTCAAGAGATGGCAAATCCG 59.327 52.381 0.00 0.00 34.42 4.18
2783 5738 1.672881 CGGTCAAGAGATGGCAAATCC 59.327 52.381 0.00 0.00 34.42 3.01
2784 5739 2.359900 ACGGTCAAGAGATGGCAAATC 58.640 47.619 0.00 0.00 34.42 2.17
2785 5740 2.489329 CAACGGTCAAGAGATGGCAAAT 59.511 45.455 0.00 0.00 34.42 2.32
2786 5741 1.879380 CAACGGTCAAGAGATGGCAAA 59.121 47.619 0.00 0.00 34.42 3.68
2787 5742 1.522668 CAACGGTCAAGAGATGGCAA 58.477 50.000 0.00 0.00 34.42 4.52
2788 5743 0.321564 CCAACGGTCAAGAGATGGCA 60.322 55.000 0.00 0.00 34.42 4.92
2789 5744 0.036388 TCCAACGGTCAAGAGATGGC 60.036 55.000 0.00 0.00 0.00 4.40
2790 5745 2.555199 GATCCAACGGTCAAGAGATGG 58.445 52.381 0.00 0.00 0.00 3.51
2791 5746 2.196749 CGATCCAACGGTCAAGAGATG 58.803 52.381 0.00 0.00 0.00 2.90
2792 5747 1.137086 CCGATCCAACGGTCAAGAGAT 59.863 52.381 0.00 0.00 46.70 2.75
2793 5748 0.530744 CCGATCCAACGGTCAAGAGA 59.469 55.000 0.00 0.00 46.70 3.10
2794 5749 3.050703 CCGATCCAACGGTCAAGAG 57.949 57.895 0.00 0.00 46.70 2.85
2806 5761 2.386661 ATCGTTGGATATGCCGATCC 57.613 50.000 6.97 6.97 45.06 3.36
2807 5762 7.224753 ACATATTAATCGTTGGATATGCCGATC 59.775 37.037 8.39 0.00 38.96 3.69
2808 5763 7.011389 CACATATTAATCGTTGGATATGCCGAT 59.989 37.037 3.21 3.21 41.41 4.18
2809 5764 6.312672 CACATATTAATCGTTGGATATGCCGA 59.687 38.462 0.00 0.00 40.66 5.54
2810 5765 6.456853 CCACATATTAATCGTTGGATATGCCG 60.457 42.308 0.00 0.00 40.66 5.69
2811 5766 6.597672 TCCACATATTAATCGTTGGATATGCC 59.402 38.462 7.45 0.00 36.43 4.40
2812 5767 7.609760 TCCACATATTAATCGTTGGATATGC 57.390 36.000 7.45 0.00 36.43 3.14
2813 5768 7.550551 AGCTCCACATATTAATCGTTGGATATG 59.449 37.037 10.68 0.00 38.07 1.78
2814 5769 7.624549 AGCTCCACATATTAATCGTTGGATAT 58.375 34.615 10.68 3.05 31.01 1.63
2815 5770 7.004555 AGCTCCACATATTAATCGTTGGATA 57.995 36.000 10.68 0.00 31.01 2.59
2816 5771 5.869579 AGCTCCACATATTAATCGTTGGAT 58.130 37.500 10.68 0.00 0.00 3.41
2817 5772 5.290493 AGCTCCACATATTAATCGTTGGA 57.710 39.130 10.09 10.09 0.00 3.53
2818 5773 7.361201 CCAATAGCTCCACATATTAATCGTTGG 60.361 40.741 0.00 0.00 0.00 3.77
2819 5774 7.521529 CCAATAGCTCCACATATTAATCGTTG 58.478 38.462 0.00 0.00 0.00 4.10
2820 5775 6.149474 GCCAATAGCTCCACATATTAATCGTT 59.851 38.462 0.00 0.00 38.99 3.85
2821 5776 5.643777 GCCAATAGCTCCACATATTAATCGT 59.356 40.000 0.00 0.00 38.99 3.73
2822 5777 5.643348 TGCCAATAGCTCCACATATTAATCG 59.357 40.000 0.00 0.00 44.23 3.34
2823 5778 6.430925 TGTGCCAATAGCTCCACATATTAATC 59.569 38.462 0.00 0.00 44.23 1.75
2824 5779 6.207417 GTGTGCCAATAGCTCCACATATTAAT 59.793 38.462 0.00 0.00 44.23 1.40
2825 5780 5.530915 GTGTGCCAATAGCTCCACATATTAA 59.469 40.000 0.00 0.00 44.23 1.40
2826 5781 5.063204 GTGTGCCAATAGCTCCACATATTA 58.937 41.667 0.00 0.00 44.23 0.98
2827 5782 3.885297 GTGTGCCAATAGCTCCACATATT 59.115 43.478 0.00 0.00 44.23 1.28
2828 5783 3.137176 AGTGTGCCAATAGCTCCACATAT 59.863 43.478 0.00 0.00 42.76 1.78
2829 5784 2.505407 AGTGTGCCAATAGCTCCACATA 59.495 45.455 0.00 0.00 42.76 2.29
2830 5785 1.283029 AGTGTGCCAATAGCTCCACAT 59.717 47.619 0.00 0.00 42.76 3.21
2831 5786 0.692476 AGTGTGCCAATAGCTCCACA 59.308 50.000 0.00 0.00 42.76 4.17
2832 5787 2.691409 TAGTGTGCCAATAGCTCCAC 57.309 50.000 0.00 0.00 44.23 4.02
2833 5788 5.780282 ACTATATAGTGTGCCAATAGCTCCA 59.220 40.000 14.71 0.00 37.51 3.86
2834 5789 6.102663 CACTATATAGTGTGCCAATAGCTCC 58.897 44.000 27.86 0.00 46.51 4.70
2862 5817 9.286170 GCTCCGTATTATCATCTATACCATCTA 57.714 37.037 0.00 0.00 0.00 1.98
2863 5818 7.231722 GGCTCCGTATTATCATCTATACCATCT 59.768 40.741 0.00 0.00 0.00 2.90
2864 5819 7.014326 TGGCTCCGTATTATCATCTATACCATC 59.986 40.741 0.00 0.00 0.00 3.51
2865 5820 6.839134 TGGCTCCGTATTATCATCTATACCAT 59.161 38.462 0.00 0.00 0.00 3.55
2866 5821 6.192044 TGGCTCCGTATTATCATCTATACCA 58.808 40.000 0.00 0.00 0.00 3.25
2867 5822 6.239064 CCTGGCTCCGTATTATCATCTATACC 60.239 46.154 0.00 0.00 0.00 2.73
2868 5823 6.736243 GCCTGGCTCCGTATTATCATCTATAC 60.736 46.154 12.43 0.00 0.00 1.47
2869 5824 5.302059 GCCTGGCTCCGTATTATCATCTATA 59.698 44.000 12.43 0.00 0.00 1.31
2870 5825 4.100189 GCCTGGCTCCGTATTATCATCTAT 59.900 45.833 12.43 0.00 0.00 1.98
2871 5826 3.447586 GCCTGGCTCCGTATTATCATCTA 59.552 47.826 12.43 0.00 0.00 1.98
2872 5827 2.234908 GCCTGGCTCCGTATTATCATCT 59.765 50.000 12.43 0.00 0.00 2.90
2873 5828 2.234908 AGCCTGGCTCCGTATTATCATC 59.765 50.000 17.22 0.00 30.62 2.92
2916 5871 4.692625 CACTTATTGACAACAGAGTCCCAG 59.307 45.833 3.69 0.00 37.73 4.45
2918 6046 4.894784 TCACTTATTGACAACAGAGTCCC 58.105 43.478 3.69 0.00 37.73 4.46
2963 6091 0.684535 TGCTCGACAAGGGACATGAA 59.315 50.000 0.00 0.00 0.00 2.57
2973 6101 1.941209 GCATCCAAGACTGCTCGACAA 60.941 52.381 0.00 0.00 35.49 3.18
2974 6102 0.390340 GCATCCAAGACTGCTCGACA 60.390 55.000 0.00 0.00 35.49 4.35
2977 6108 1.376543 AATGCATCCAAGACTGCTCG 58.623 50.000 0.00 0.00 39.16 5.03
3006 6137 8.306038 TCTGTTATTTTGCTCATACTTTGCATT 58.694 29.630 0.00 0.00 36.55 3.56
3125 6662 7.889589 AGGTTTACTTGAAAAATTATGCAGC 57.110 32.000 0.00 0.00 0.00 5.25
3219 6756 4.960938 TGAGCACAACAGTGTAGATTTCT 58.039 39.130 0.00 0.00 35.72 2.52
3228 6765 6.149308 TCCAGTAATAAATGAGCACAACAGTG 59.851 38.462 0.00 0.00 36.35 3.66
3232 6769 9.277783 AGATATCCAGTAATAAATGAGCACAAC 57.722 33.333 0.00 0.00 0.00 3.32
3256 6793 5.246203 AGAAATACCAGCACAGTTGTAGAGA 59.754 40.000 0.00 0.00 0.00 3.10
3437 6981 5.940470 TCTTTGGCTTTCTCTAATTCTGTCC 59.060 40.000 0.00 0.00 0.00 4.02
3639 7185 6.041296 AGGCCAGAAATGATCAATCCATAAAC 59.959 38.462 5.01 0.00 0.00 2.01
3684 7230 3.501950 GTGGTTTGCTAGCTAATGTTGC 58.498 45.455 17.23 2.21 0.00 4.17
3689 7235 4.081862 TGTCTACGTGGTTTGCTAGCTAAT 60.082 41.667 17.23 1.77 0.00 1.73
3824 7373 7.136822 ACAGTACCTATTTTGGCAGATATGA 57.863 36.000 0.00 0.00 0.00 2.15
3961 7803 7.271511 AGTTATTTTGCAACTCATGTCCAAAA 58.728 30.769 0.00 3.87 30.36 2.44
4000 8230 9.889128 GGGAGAAATTGATTTTATTTGGATGAA 57.111 29.630 0.00 0.00 0.00 2.57
4006 8236 8.096414 ACCAGTGGGAGAAATTGATTTTATTTG 58.904 33.333 15.21 0.00 38.05 2.32
4017 8247 5.765510 TGCATATTACCAGTGGGAGAAATT 58.234 37.500 15.21 0.00 38.05 1.82
4050 8280 6.433766 CAAGTGGACAAATCTCTTTCTTGAC 58.566 40.000 0.00 0.00 33.86 3.18
4075 8307 0.240945 CACCGGAATGGCAAAGTGAC 59.759 55.000 9.46 0.00 43.94 3.67
4085 8317 4.616181 GGTATGTTTCTTCACCGGAATG 57.384 45.455 9.46 0.00 31.34 2.67
4339 8609 5.518848 TTACGTGTCAGGTAACAGAAGAA 57.481 39.130 12.89 0.00 41.41 2.52
4356 8626 2.017049 GGCAGCAGGATTTCATTACGT 58.983 47.619 0.00 0.00 0.00 3.57
4376 8658 3.376078 ATGCAACTGCGGGCAAGG 61.376 61.111 0.35 0.00 44.20 3.61
4382 8664 2.256158 CACACCATGCAACTGCGG 59.744 61.111 0.00 0.00 45.83 5.69
4402 8686 2.177394 TGCTTTTGCCGATGTAGTCA 57.823 45.000 0.00 0.00 46.87 3.41
4501 8785 5.234466 AGTACAATATGAAGAGGATGGCC 57.766 43.478 0.00 0.00 0.00 5.36
4582 8866 3.428862 CGCTGTACATCATACTCCACACA 60.429 47.826 0.00 0.00 0.00 3.72
4583 8867 3.116300 CGCTGTACATCATACTCCACAC 58.884 50.000 0.00 0.00 0.00 3.82
4590 8874 3.000322 GCAAGTGTCGCTGTACATCATAC 60.000 47.826 0.00 0.00 0.00 2.39
4600 8884 2.667536 AGCTGGCAAGTGTCGCTG 60.668 61.111 0.00 0.00 30.88 5.18
4653 8937 2.941720 CTGAGCATTTACAGAAGCCTCC 59.058 50.000 0.00 0.00 36.38 4.30
4684 8968 2.256174 CCACGCAGCAATTTCAGAATG 58.744 47.619 0.00 0.00 37.54 2.67
4763 9076 1.083806 GGCAATTTTTAGCAGCGGGC 61.084 55.000 0.00 0.00 45.30 6.13
4764 9077 0.460109 GGGCAATTTTTAGCAGCGGG 60.460 55.000 0.00 0.00 0.00 6.13
4765 9078 0.532115 AGGGCAATTTTTAGCAGCGG 59.468 50.000 0.00 0.00 0.00 5.52
4766 9079 1.474077 AGAGGGCAATTTTTAGCAGCG 59.526 47.619 0.00 0.00 0.00 5.18
4767 9080 2.884827 CAGAGGGCAATTTTTAGCAGC 58.115 47.619 0.00 0.00 0.00 5.25
4768 9081 2.884827 GCAGAGGGCAATTTTTAGCAG 58.115 47.619 0.00 0.00 43.97 4.24
4858 9171 7.398829 TGTTCATCCTATTACTGCCAGTTTAA 58.601 34.615 1.02 0.00 0.00 1.52
4869 9182 6.816640 TGTAGTGTTGCTGTTCATCCTATTAC 59.183 38.462 0.00 0.00 0.00 1.89
4873 9186 4.562757 GGTGTAGTGTTGCTGTTCATCCTA 60.563 45.833 0.00 0.00 0.00 2.94
4884 9197 2.226330 TGGTGATTGGTGTAGTGTTGC 58.774 47.619 0.00 0.00 0.00 4.17
4892 9205 6.126863 TCTATTTTCTCTGGTGATTGGTGT 57.873 37.500 0.00 0.00 0.00 4.16
4911 9224 4.820716 GCATTGCTTGTGAAGGAGATCTAT 59.179 41.667 0.16 0.00 0.00 1.98
5066 9393 8.718102 ATGTGTTTAACTATATGTGACCTCAC 57.282 34.615 0.00 0.00 46.59 3.51
5070 9397 8.500753 TGGAATGTGTTTAACTATATGTGACC 57.499 34.615 0.00 0.00 0.00 4.02
5077 9404 8.315482 TGTAGTGCTGGAATGTGTTTAACTATA 58.685 33.333 0.00 0.00 0.00 1.31
5120 9449 2.125592 GCGCTCTTCTGCTGCTCT 60.126 61.111 0.00 0.00 32.72 4.09
5191 9520 1.604278 GTTGGCTTCAGTGTTGGACTC 59.396 52.381 0.00 0.00 29.75 3.36
5192 9521 1.064758 TGTTGGCTTCAGTGTTGGACT 60.065 47.619 0.00 0.00 34.02 3.85
5194 9523 1.340502 TGTGTTGGCTTCAGTGTTGGA 60.341 47.619 0.00 0.00 0.00 3.53
5195 9524 1.066002 CTGTGTTGGCTTCAGTGTTGG 59.934 52.381 0.00 0.00 0.00 3.77
5226 9560 3.019564 CCTCCAAATCAGCTTCGGATTT 58.980 45.455 5.00 5.00 43.71 2.17
5227 9561 2.648059 CCTCCAAATCAGCTTCGGATT 58.352 47.619 0.00 0.00 36.57 3.01
5228 9562 1.748591 GCCTCCAAATCAGCTTCGGAT 60.749 52.381 0.00 0.00 0.00 4.18
5230 9564 0.393537 AGCCTCCAAATCAGCTTCGG 60.394 55.000 0.00 0.00 29.27 4.30
5231 9565 0.731417 CAGCCTCCAAATCAGCTTCG 59.269 55.000 0.00 0.00 31.93 3.79
5235 9709 3.881937 AATTTCAGCCTCCAAATCAGC 57.118 42.857 0.00 0.00 0.00 4.26
5237 9711 6.009589 TCTGTAAATTTCAGCCTCCAAATCA 58.990 36.000 0.00 0.00 33.48 2.57
5245 9719 4.457257 GTCTTGCTCTGTAAATTTCAGCCT 59.543 41.667 0.00 0.00 33.48 4.58
5294 9768 1.163420 TTTGTTCATGCGCGTGGTCT 61.163 50.000 28.29 0.00 0.00 3.85
5306 9780 4.886489 TGTGGATCTGTTGATGTTTGTTCA 59.114 37.500 0.00 0.00 32.19 3.18
5324 9798 3.709141 TGAATTCGTCCCTGATATGTGGA 59.291 43.478 0.04 0.00 0.00 4.02
5330 9804 3.112263 ACCCTTGAATTCGTCCCTGATA 58.888 45.455 0.04 0.00 0.00 2.15
5332 9806 1.358152 ACCCTTGAATTCGTCCCTGA 58.642 50.000 0.04 0.00 0.00 3.86
5333 9807 3.343941 TTACCCTTGAATTCGTCCCTG 57.656 47.619 0.04 0.00 0.00 4.45
5337 9811 3.751698 AGCAGTTTACCCTTGAATTCGTC 59.248 43.478 0.04 0.00 0.00 4.20
5403 9886 4.047059 CGCTGCTGTTTGCCCTGG 62.047 66.667 0.00 0.00 42.00 4.45
5427 9910 0.727398 CTCGGGTCTGAAAAATCGCC 59.273 55.000 0.00 0.00 0.00 5.54
5434 9917 1.812686 CGTGGTCCTCGGGTCTGAAA 61.813 60.000 5.40 0.00 0.00 2.69
5435 9918 2.273179 CGTGGTCCTCGGGTCTGAA 61.273 63.158 5.40 0.00 0.00 3.02
5436 9919 2.675423 CGTGGTCCTCGGGTCTGA 60.675 66.667 5.40 0.00 0.00 3.27
5439 9922 2.260743 GTTCGTGGTCCTCGGGTC 59.739 66.667 13.11 1.48 0.00 4.46
5440 9923 2.522436 TGTTCGTGGTCCTCGGGT 60.522 61.111 13.11 0.00 0.00 5.28
5441 9924 2.048503 GTGTTCGTGGTCCTCGGG 60.049 66.667 13.11 0.00 0.00 5.14
5442 9925 1.372997 CAGTGTTCGTGGTCCTCGG 60.373 63.158 13.11 0.00 0.00 4.63
5443 9926 2.022129 GCAGTGTTCGTGGTCCTCG 61.022 63.158 7.02 7.02 0.00 4.63
5455 9938 4.342951 TGTTTGGTACAGTACTAGCAGTGT 59.657 41.667 10.62 8.49 42.39 3.55
5463 9946 4.660789 AGTCGTTGTTTGGTACAGTACT 57.339 40.909 10.62 0.00 42.39 2.73
5469 9952 2.925563 CCGGATAGTCGTTGTTTGGTAC 59.074 50.000 0.00 0.00 0.00 3.34
5470 9953 2.562298 ACCGGATAGTCGTTGTTTGGTA 59.438 45.455 9.46 0.00 0.00 3.25
5484 9967 2.138179 GCTAGGCCACCACCGGATA 61.138 63.158 9.46 0.00 33.69 2.59
5485 9968 3.480133 GCTAGGCCACCACCGGAT 61.480 66.667 9.46 0.00 33.69 4.18
5510 10005 4.937431 GGCCGCACCCTCTATGGC 62.937 72.222 0.00 0.00 44.98 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.