Multiple sequence alignment - TraesCS1D01G367800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G367800 chr1D 100.000 5910 0 0 1 5910 447563676 447557767 0.000000e+00 10914.0
1 TraesCS1D01G367800 chr1A 95.535 3068 113 7 2531 5587 543645011 543641957 0.000000e+00 4885.0
2 TraesCS1D01G367800 chr1A 85.357 1919 202 45 357 2248 543653912 543652046 0.000000e+00 1914.0
3 TraesCS1D01G367800 chr1A 92.523 214 13 2 5653 5865 543641956 543641745 2.680000e-78 303.0
4 TraesCS1D01G367800 chr1A 89.300 243 23 1 88 327 543654684 543654442 9.630000e-78 302.0
5 TraesCS1D01G367800 chr1A 91.500 200 9 4 2298 2489 543652037 543651838 9.760000e-68 268.0
6 TraesCS1D01G367800 chr1A 88.189 127 13 2 1724 1849 465107324 465107199 3.690000e-32 150.0
7 TraesCS1D01G367800 chr1A 100.000 29 0 0 326 354 543654165 543654137 3.000000e-03 54.7
8 TraesCS1D01G367800 chr1B 94.235 3001 105 33 2626 5587 613035817 613032846 0.000000e+00 4521.0
9 TraesCS1D01G367800 chr1B 91.028 457 29 8 813 1262 613037132 613036681 1.820000e-169 606.0
10 TraesCS1D01G367800 chr1B 81.219 804 102 34 1858 2640 613036611 613035836 2.360000e-168 603.0
11 TraesCS1D01G367800 chr1B 89.362 329 32 3 3 329 613037697 613037370 1.530000e-110 411.0
12 TraesCS1D01G367800 chr1B 91.635 263 15 4 5653 5910 613032845 613032585 2.030000e-94 357.0
13 TraesCS1D01G367800 chr4A 94.322 317 13 1 496 812 666201990 666202301 1.150000e-131 481.0
14 TraesCS1D01G367800 chr3A 94.855 311 11 1 502 812 700723309 700723614 1.150000e-131 481.0
15 TraesCS1D01G367800 chr3B 94.551 312 12 1 501 812 606376049 606376355 1.490000e-130 477.0
16 TraesCS1D01G367800 chr3B 94.249 313 13 1 501 813 727161440 727161133 1.930000e-129 473.0
17 TraesCS1D01G367800 chr4B 94.268 314 13 1 501 814 40215533 40215225 5.360000e-130 475.0
18 TraesCS1D01G367800 chr4B 93.987 316 14 1 498 813 667547938 667548248 1.930000e-129 473.0
19 TraesCS1D01G367800 chr4D 93.189 323 16 2 501 822 459568962 459568645 2.490000e-128 470.0
20 TraesCS1D01G367800 chr5A 92.901 324 16 3 502 824 139481495 139481178 1.160000e-126 464.0
21 TraesCS1D01G367800 chr5A 71.651 321 87 4 4285 4603 616500225 616500543 1.060000e-12 86.1
22 TraesCS1D01G367800 chr5D 76.074 163 37 2 4285 4446 493343630 493343791 3.800000e-12 84.2
23 TraesCS1D01G367800 chr5B 72.764 246 65 2 4359 4603 609096632 609096876 1.370000e-11 82.4
24 TraesCS1D01G367800 chr7A 91.111 45 3 1 423 466 61569854 61569898 6.400000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G367800 chr1D 447557767 447563676 5909 True 10914.000 10914 100.00000 1 5910 1 chr1D.!!$R1 5909
1 TraesCS1D01G367800 chr1A 543641745 543645011 3266 True 2594.000 4885 94.02900 2531 5865 2 chr1A.!!$R2 3334
2 TraesCS1D01G367800 chr1A 543651838 543654684 2846 True 634.675 1914 91.53925 88 2489 4 chr1A.!!$R3 2401
3 TraesCS1D01G367800 chr1B 613032585 613037697 5112 True 1299.600 4521 89.49580 3 5910 5 chr1B.!!$R1 5907

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 1258 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23 F
1587 2110 0.327191 GGTGGGGTTAGAGGGATGGA 60.327 60.000 0.00 0.00 0.00 3.41 F
2273 2816 0.179020 TCCACCACAAGTCAAGGCAG 60.179 55.000 0.00 0.00 0.00 4.85 F
2301 2844 0.392863 TGTGGATCGATGGCACCAAG 60.393 55.000 0.54 0.00 34.11 3.61 F
2852 3444 0.460284 CCTCCGTCAGTCCAAATCGG 60.460 60.000 0.00 0.00 42.12 4.18 F
3220 3812 1.368850 GGAGTTGTCGCGTGCAAAC 60.369 57.895 17.19 12.25 0.00 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 2430 0.040425 CACGCCAAACCAACTAGCAC 60.040 55.0 0.00 0.0 0.00 4.40 R
2521 3073 0.179166 CTGGCAACACACACACACAC 60.179 55.0 0.00 0.0 46.17 3.82 R
3871 4463 0.460311 CTAGGGTAGCAACTCCACCG 59.540 60.0 0.00 0.0 32.84 4.94 R
4275 4867 0.169009 GCTCCAACTTAAAGGCGCAG 59.831 55.0 10.83 0.0 35.74 5.18 R
4827 5419 0.031994 AACAGGCGGCATTTCAACAC 59.968 50.0 13.08 0.0 0.00 3.32 R
5209 5839 1.471119 CCAACGGCTAGACCTGTAGA 58.529 55.0 0.00 0.0 35.61 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.156343 ACTTGGTCTCGAGTGAAAGC 57.844 50.000 13.13 3.07 36.32 3.51
27 28 1.270305 TGGTCTCGAGTGAAAGCCTTG 60.270 52.381 13.13 0.00 0.00 3.61
40 41 4.595781 TGAAAGCCTTGGGTCTAACTCTAA 59.404 41.667 0.00 0.00 0.00 2.10
45 47 6.181190 AGCCTTGGGTCTAACTCTAATTTTC 58.819 40.000 0.00 0.00 0.00 2.29
49 51 7.766738 CCTTGGGTCTAACTCTAATTTTCTCTC 59.233 40.741 0.00 0.00 0.00 3.20
54 56 7.650104 GGTCTAACTCTAATTTTCTCTCGATGG 59.350 40.741 0.00 0.00 0.00 3.51
64 66 4.909696 TTCTCTCGATGGAAGATCTGAC 57.090 45.455 0.00 0.00 0.00 3.51
80 82 8.568617 AAGATCTGACCCTAATTGGTTATACT 57.431 34.615 0.00 0.00 39.24 2.12
90 92 7.014230 CCCTAATTGGTTATACTTGACCATTGG 59.986 40.741 0.00 0.00 44.83 3.16
107 112 1.893544 TGGCCATGGCAATGTTTTTG 58.106 45.000 36.56 0.00 44.11 2.44
110 115 2.220313 GCCATGGCAATGTTTTTGTGT 58.780 42.857 32.08 0.00 41.49 3.72
209 214 4.750098 GGTGGTTATATCTGACGACAATGG 59.250 45.833 0.00 0.00 0.00 3.16
241 246 1.511768 CTCCCTTCCCGAAGACGTC 59.488 63.158 7.70 7.70 40.79 4.34
255 260 3.570926 AGACGTCGTTGCTGAAGAATA 57.429 42.857 10.46 0.00 0.00 1.75
259 264 5.408604 AGACGTCGTTGCTGAAGAATATTTT 59.591 36.000 10.46 0.00 0.00 1.82
381 885 7.364056 GGGGTATGTATATATTGACGTTGGCTA 60.364 40.741 0.00 0.00 0.00 3.93
420 924 4.393680 TCGTATAAAGTTTGGATGTGTGCC 59.606 41.667 0.00 0.00 0.00 5.01
483 989 9.323985 TCAATAAAATCTTCAAAAACCACCAAG 57.676 29.630 0.00 0.00 0.00 3.61
499 1005 0.863144 CAAGCAATTTGGCACAGTGC 59.137 50.000 17.43 17.43 42.39 4.40
530 1036 2.305927 ACCTGTGGTTGAGATGGTTAGG 59.694 50.000 0.00 0.00 27.29 2.69
531 1037 2.305927 CCTGTGGTTGAGATGGTTAGGT 59.694 50.000 0.00 0.00 0.00 3.08
549 1055 1.906574 GGTGGACAGTGGTATCCTCAA 59.093 52.381 0.00 0.00 35.86 3.02
554 1060 2.505819 GACAGTGGTATCCTCAACCCAT 59.494 50.000 0.00 0.00 36.06 4.00
573 1079 3.194116 CCATCAGGGTTCAAATCTTGGTG 59.806 47.826 0.00 0.00 0.00 4.17
576 1082 2.229784 CAGGGTTCAAATCTTGGTGCTC 59.770 50.000 0.00 0.00 0.00 4.26
588 1094 1.667236 TGGTGCTCGCATTATTCCTG 58.333 50.000 0.00 0.00 0.00 3.86
589 1095 0.947244 GGTGCTCGCATTATTCCTGG 59.053 55.000 0.00 0.00 0.00 4.45
601 1107 7.040478 TCGCATTATTCCTGGATTTATTTCAGG 60.040 37.037 0.00 0.00 46.91 3.86
616 1122 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
629 1135 1.298157 CGATGCGCTTTCAGTGGGAA 61.298 55.000 9.73 0.00 0.00 3.97
634 1140 1.433534 CGCTTTCAGTGGGAAGAGAC 58.566 55.000 10.24 0.00 36.72 3.36
638 1144 2.814280 TTCAGTGGGAAGAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
669 1175 0.320697 GAGGTGCCTACGGTGACTTT 59.679 55.000 0.00 0.00 0.00 2.66
676 1182 3.998341 TGCCTACGGTGACTTTGTAAATC 59.002 43.478 0.00 0.00 0.00 2.17
681 1187 5.924475 ACGGTGACTTTGTAAATCTCAAG 57.076 39.130 0.00 0.00 0.00 3.02
682 1188 5.607477 ACGGTGACTTTGTAAATCTCAAGA 58.393 37.500 0.00 0.00 0.00 3.02
683 1189 6.231211 ACGGTGACTTTGTAAATCTCAAGAT 58.769 36.000 0.00 0.00 36.07 2.40
684 1190 6.147821 ACGGTGACTTTGTAAATCTCAAGATG 59.852 38.462 0.00 0.00 34.49 2.90
685 1191 6.368791 CGGTGACTTTGTAAATCTCAAGATGA 59.631 38.462 0.00 0.00 34.49 2.92
686 1192 7.412346 CGGTGACTTTGTAAATCTCAAGATGAG 60.412 40.741 0.88 0.88 45.59 2.90
702 1208 1.341080 TGAGATGATATGCCGGCTCA 58.659 50.000 29.70 23.34 0.00 4.26
710 1216 0.395724 TATGCCGGCTCAGTCTCTCA 60.396 55.000 29.70 2.45 0.00 3.27
711 1217 1.260538 ATGCCGGCTCAGTCTCTCAA 61.261 55.000 29.70 1.81 0.00 3.02
713 1219 0.739112 GCCGGCTCAGTCTCTCAAAG 60.739 60.000 22.15 0.00 0.00 2.77
724 1230 5.068855 TCAGTCTCTCAAAGATGCTCATAGG 59.931 44.000 0.00 0.00 36.11 2.57
726 1232 3.645212 TCTCTCAAAGATGCTCATAGGGG 59.355 47.826 0.00 0.00 0.00 4.79
727 1233 3.387962 TCTCAAAGATGCTCATAGGGGT 58.612 45.455 0.00 0.00 0.00 4.95
729 1235 4.590647 TCTCAAAGATGCTCATAGGGGTAG 59.409 45.833 0.00 0.00 0.00 3.18
731 1237 3.637821 AAGATGCTCATAGGGGTAGGA 57.362 47.619 0.00 0.00 0.00 2.94
733 1239 3.448934 AGATGCTCATAGGGGTAGGATG 58.551 50.000 0.00 0.00 0.00 3.51
734 1240 2.795291 TGCTCATAGGGGTAGGATGT 57.205 50.000 0.00 0.00 0.00 3.06
735 1241 2.329267 TGCTCATAGGGGTAGGATGTG 58.671 52.381 0.00 0.00 0.00 3.21
736 1242 1.002544 GCTCATAGGGGTAGGATGTGC 59.997 57.143 0.00 0.00 0.00 4.57
748 1254 1.438710 GATGTGCGTGTGTGCGTTC 60.439 57.895 0.00 0.00 37.81 3.95
751 1257 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
752 1258 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
753 1259 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
762 1268 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
766 1272 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
767 1273 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
771 1277 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
773 1279 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
780 1286 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
786 1292 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
791 1297 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
794 1300 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
800 1306 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
802 1308 2.670414 GCTTGTGTCTGTACTGATGCTC 59.330 50.000 5.69 0.00 0.00 4.26
803 1309 3.862264 GCTTGTGTCTGTACTGATGCTCA 60.862 47.826 5.69 0.00 0.00 4.26
804 1310 4.309933 CTTGTGTCTGTACTGATGCTCAA 58.690 43.478 5.69 6.69 0.00 3.02
847 1353 0.389426 ATCAGTTGTCGTGCCGGTAC 60.389 55.000 13.35 13.35 0.00 3.34
874 1380 2.094906 TGTCGAGACTAAACATGGACCG 60.095 50.000 4.78 0.00 0.00 4.79
881 1387 0.606944 TAAACATGGACCGGGTGTGC 60.607 55.000 3.30 0.00 35.54 4.57
964 1470 3.005897 GGTCCATCATAGTACAGCATCGT 59.994 47.826 0.00 0.00 0.00 3.73
1006 1519 2.238395 GTTTCCTCCTCCTTCATGCTCT 59.762 50.000 0.00 0.00 0.00 4.09
1032 1545 2.729862 GCACTTGCTCGTCGTCGT 60.730 61.111 1.33 0.00 38.21 4.34
1062 1577 2.506217 CCCGTCACATGGTCGTCG 60.506 66.667 0.00 0.00 0.00 5.12
1085 1600 0.740868 AATGCCACCGACACGATCAG 60.741 55.000 0.00 0.00 0.00 2.90
1171 1686 6.329530 GGTTCTTCCAGCCTCAAGGTAACT 62.330 50.000 0.00 0.00 43.04 2.24
1172 1687 7.033214 GGTTCTTCCAGCCTCAAGGTAACTA 62.033 48.000 0.00 0.00 41.03 2.24
1173 1688 8.430678 GGTTCTTCCAGCCTCAAGGTAACTAA 62.431 46.154 0.00 0.00 41.03 2.24
1193 1709 4.345859 AACATCCACCACGTCTTCTTAA 57.654 40.909 0.00 0.00 0.00 1.85
1196 1712 5.313712 ACATCCACCACGTCTTCTTAATTT 58.686 37.500 0.00 0.00 0.00 1.82
1197 1713 5.411669 ACATCCACCACGTCTTCTTAATTTC 59.588 40.000 0.00 0.00 0.00 2.17
1198 1714 4.320870 TCCACCACGTCTTCTTAATTTCC 58.679 43.478 0.00 0.00 0.00 3.13
1220 1736 3.399644 CTCCTCCCTCCTCCTGAATAGTA 59.600 52.174 0.00 0.00 0.00 1.82
1262 1778 1.464023 CCAGTCGTGCTTATGTTTGCG 60.464 52.381 0.00 0.00 0.00 4.85
1264 1780 2.096466 CAGTCGTGCTTATGTTTGCGAA 60.096 45.455 0.00 0.00 0.00 4.70
1313 1829 2.427410 CTTGCGCTTCGTTGTGCC 60.427 61.111 9.73 0.00 42.20 5.01
1314 1830 4.306471 TTGCGCTTCGTTGTGCCG 62.306 61.111 9.73 0.00 42.20 5.69
1349 1871 9.784531 TTTGGGTTGCATAGATTTTATTTTTCA 57.215 25.926 0.00 0.00 0.00 2.69
1370 1892 9.758651 TTTTCACAATAGCTATATGTATGTCGT 57.241 29.630 6.68 0.00 0.00 4.34
1371 1893 8.965986 TTCACAATAGCTATATGTATGTCGTC 57.034 34.615 6.68 0.00 0.00 4.20
1388 1910 4.022416 TGTCGTCTGAATTTGGAATTTGGG 60.022 41.667 0.00 0.00 0.00 4.12
1390 1912 4.217550 TCGTCTGAATTTGGAATTTGGGTC 59.782 41.667 0.00 0.00 0.00 4.46
1391 1913 4.485163 GTCTGAATTTGGAATTTGGGTCG 58.515 43.478 0.00 0.00 0.00 4.79
1406 1928 0.437295 GGTCGGTCGATTTTCACGTG 59.563 55.000 9.94 9.94 0.00 4.49
1415 1937 3.064207 CGATTTTCACGTGAAGGAAGGA 58.936 45.455 28.21 12.17 35.21 3.36
1417 1939 4.610680 CGATTTTCACGTGAAGGAAGGAAC 60.611 45.833 28.21 14.61 35.21 3.62
1430 1952 3.399305 AGGAAGGAACAGTGGAAGGAAAT 59.601 43.478 0.00 0.00 0.00 2.17
1433 1955 5.416013 GGAAGGAACAGTGGAAGGAAATAAG 59.584 44.000 0.00 0.00 0.00 1.73
1440 1962 4.397417 CAGTGGAAGGAAATAAGGAGCTTG 59.603 45.833 0.00 0.00 0.00 4.01
1467 1989 6.214412 CAGAGAAGGCTACCCCATTATCTATT 59.786 42.308 0.00 0.00 35.39 1.73
1468 1990 6.442244 AGAGAAGGCTACCCCATTATCTATTC 59.558 42.308 0.00 0.00 35.39 1.75
1479 2001 5.785423 CCCATTATCTATTCTAGGGGTGTGA 59.215 44.000 0.00 0.00 0.00 3.58
1493 2015 2.930562 GTGAGGGGGTGGTGAGCT 60.931 66.667 0.00 0.00 0.00 4.09
1494 2016 2.607750 TGAGGGGGTGGTGAGCTC 60.608 66.667 6.82 6.82 0.00 4.09
1495 2017 3.775654 GAGGGGGTGGTGAGCTCG 61.776 72.222 9.64 0.00 0.00 5.03
1498 2020 4.767255 GGGGTGGTGAGCTCGCTG 62.767 72.222 25.54 0.00 0.00 5.18
1507 2029 2.683212 AGCTCGCTGGAGAAGGCT 60.683 61.111 0.00 0.00 43.27 4.58
1509 2031 1.227118 GCTCGCTGGAGAAGGCTAC 60.227 63.158 0.00 0.00 43.27 3.58
1547 2070 1.756561 GTGTGGGGTGGTGCAAGTT 60.757 57.895 0.00 0.00 0.00 2.66
1548 2071 1.454847 TGTGGGGTGGTGCAAGTTC 60.455 57.895 0.00 0.00 0.00 3.01
1549 2072 2.203280 TGGGGTGGTGCAAGTTCG 60.203 61.111 0.00 0.00 0.00 3.95
1551 2074 4.025401 GGGTGGTGCAAGTTCGCG 62.025 66.667 0.00 0.00 33.35 5.87
1553 2076 4.025401 GTGGTGCAAGTTCGCGGG 62.025 66.667 6.13 0.00 33.35 6.13
1585 2108 0.689745 TCGGTGGGGTTAGAGGGATG 60.690 60.000 0.00 0.00 0.00 3.51
1587 2110 0.327191 GGTGGGGTTAGAGGGATGGA 60.327 60.000 0.00 0.00 0.00 3.41
1599 2122 4.489771 GATGGACGGGGGCAGTGG 62.490 72.222 0.00 0.00 0.00 4.00
1711 2238 2.798364 TTCGGTCGGTGGCAGTTGA 61.798 57.895 0.00 0.00 0.00 3.18
1713 2240 2.110213 GGTCGGTGGCAGTTGACA 59.890 61.111 13.58 0.00 33.04 3.58
1722 2249 1.416813 GGCAGTTGACAGCTCGATCG 61.417 60.000 9.36 9.36 0.00 3.69
1727 2254 3.148279 GACAGCTCGATCGGGGGT 61.148 66.667 18.35 12.10 0.00 4.95
1745 2272 4.164221 GGGGGTAGAAGATGAACATGAGAA 59.836 45.833 0.00 0.00 0.00 2.87
1748 2275 5.394224 GGGTAGAAGATGAACATGAGAACGA 60.394 44.000 0.00 0.00 0.00 3.85
1749 2276 5.517054 GGTAGAAGATGAACATGAGAACGAC 59.483 44.000 0.00 0.00 0.00 4.34
1750 2277 5.398603 AGAAGATGAACATGAGAACGACT 57.601 39.130 0.00 0.00 0.00 4.18
1769 2296 2.829120 ACTGAGAGGTAGAAGAAGGTGC 59.171 50.000 0.00 0.00 0.00 5.01
1772 2299 3.011369 TGAGAGGTAGAAGAAGGTGCCTA 59.989 47.826 0.00 0.00 0.00 3.93
1773 2300 4.024670 GAGAGGTAGAAGAAGGTGCCTAA 58.975 47.826 0.00 0.00 0.00 2.69
1777 2304 1.362224 AGAAGAAGGTGCCTAAGCCA 58.638 50.000 0.00 0.00 38.69 4.75
1791 2318 4.248859 CCTAAGCCATTGGATCTACATCG 58.751 47.826 6.95 0.00 0.00 3.84
1792 2319 4.021104 CCTAAGCCATTGGATCTACATCGA 60.021 45.833 6.95 0.00 0.00 3.59
1795 2322 4.384056 AGCCATTGGATCTACATCGAAAG 58.616 43.478 6.95 0.00 31.25 2.62
1824 2351 1.509703 GATTCGACCGGCCCTAATTC 58.490 55.000 0.00 0.00 0.00 2.17
1830 2357 2.384828 GACCGGCCCTAATTCCATTTT 58.615 47.619 0.00 0.00 0.00 1.82
1831 2358 2.100749 GACCGGCCCTAATTCCATTTTG 59.899 50.000 0.00 0.00 0.00 2.44
1838 2365 5.129320 GGCCCTAATTCCATTTTGAGTTGAT 59.871 40.000 0.00 0.00 0.00 2.57
1852 2380 8.995027 TTTTGAGTTGATTGGTATATAGGCAT 57.005 30.769 0.00 0.00 0.00 4.40
1923 2451 0.666374 GCTAGTTGGTTTGGCGTGTT 59.334 50.000 0.00 0.00 0.00 3.32
2069 2606 3.632700 ACGCACGCACGTACATTT 58.367 50.000 0.96 0.00 46.19 2.32
2073 2610 2.158058 ACGCACGCACGTACATTTTATT 59.842 40.909 0.96 0.00 46.19 1.40
2087 2624 7.870954 CGTACATTTTATTCCTATGAGCACCTA 59.129 37.037 0.00 0.00 0.00 3.08
2094 2631 5.735285 TTCCTATGAGCACCTATGAGATG 57.265 43.478 0.00 0.00 0.00 2.90
2100 2637 3.771479 TGAGCACCTATGAGATGTTGAGT 59.229 43.478 0.00 0.00 0.00 3.41
2112 2649 2.325583 TGTTGAGTCGGCAGAACTTT 57.674 45.000 0.00 0.00 0.00 2.66
2124 2661 3.498397 GGCAGAACTTTTTGAGATCGACA 59.502 43.478 0.00 0.00 32.78 4.35
2127 2664 5.622856 GCAGAACTTTTTGAGATCGACAAAG 59.377 40.000 16.18 12.03 38.25 2.77
2133 2670 5.515548 TTTTGAGATCGACAAAGTCATCG 57.484 39.130 16.18 0.00 38.25 3.84
2139 2676 4.395231 AGATCGACAAAGTCATCGTAGACA 59.605 41.667 11.41 0.00 42.51 3.41
2180 2720 4.282449 TCTCCTCCACTGAACGAACATAAA 59.718 41.667 0.00 0.00 0.00 1.40
2228 2771 9.287373 AGAAAATGTGAACATTAATGCCAAATT 57.713 25.926 15.48 15.59 45.06 1.82
2250 2793 2.141067 AGGACTTAAACCTTGGTGGGT 58.859 47.619 0.00 0.00 42.05 4.51
2251 2794 3.329277 AGGACTTAAACCTTGGTGGGTA 58.671 45.455 0.00 0.00 38.87 3.69
2255 2798 3.073503 ACTTAAACCTTGGTGGGTAGGTC 59.926 47.826 0.00 0.00 43.88 3.85
2257 2800 0.402272 AACCTTGGTGGGTAGGTCCA 60.402 55.000 0.00 0.00 43.88 4.02
2268 2811 1.418637 GGTAGGTCCACCACAAGTCAA 59.581 52.381 0.00 0.00 38.55 3.18
2269 2812 2.550208 GGTAGGTCCACCACAAGTCAAG 60.550 54.545 0.00 0.00 38.55 3.02
2270 2813 0.474184 AGGTCCACCACAAGTCAAGG 59.526 55.000 0.00 0.00 38.89 3.61
2271 2814 1.172812 GGTCCACCACAAGTCAAGGC 61.173 60.000 0.00 0.00 35.64 4.35
2272 2815 0.465460 GTCCACCACAAGTCAAGGCA 60.465 55.000 0.00 0.00 0.00 4.75
2273 2816 0.179020 TCCACCACAAGTCAAGGCAG 60.179 55.000 0.00 0.00 0.00 4.85
2274 2817 0.466189 CCACCACAAGTCAAGGCAGT 60.466 55.000 0.00 0.00 0.00 4.40
2275 2818 0.664761 CACCACAAGTCAAGGCAGTG 59.335 55.000 0.00 0.00 0.00 3.66
2279 2822 0.546122 ACAAGTCAAGGCAGTGTGGA 59.454 50.000 0.00 0.00 0.00 4.02
2281 2824 1.334869 CAAGTCAAGGCAGTGTGGAAC 59.665 52.381 0.00 0.00 37.35 3.62
2301 2844 0.392863 TGTGGATCGATGGCACCAAG 60.393 55.000 0.54 0.00 34.11 3.61
2344 2887 5.046878 TCTGGGCAGATTTTCTACGTCTTAA 60.047 40.000 0.00 0.00 31.41 1.85
2443 2995 6.478344 AGACTTACTATCGACGTGTTAGTAGG 59.522 42.308 0.00 15.62 36.93 3.18
2495 3047 8.739972 AGCAAAAACTATAGTATTTTGGGAGTG 58.260 33.333 29.54 16.72 41.83 3.51
2496 3048 7.973944 GCAAAAACTATAGTATTTTGGGAGTGG 59.026 37.037 29.54 17.17 41.83 4.00
2497 3049 8.466798 CAAAAACTATAGTATTTTGGGAGTGGG 58.533 37.037 25.91 12.10 39.29 4.61
2498 3050 5.906772 ACTATAGTATTTTGGGAGTGGGG 57.093 43.478 2.75 0.00 0.00 4.96
2500 3052 6.455241 ACTATAGTATTTTGGGAGTGGGGTA 58.545 40.000 2.75 0.00 0.00 3.69
2501 3053 5.641789 ATAGTATTTTGGGAGTGGGGTAC 57.358 43.478 0.00 0.00 0.00 3.34
2502 3054 3.538387 AGTATTTTGGGAGTGGGGTACT 58.462 45.455 0.00 0.00 44.02 2.73
2503 3055 4.702196 AGTATTTTGGGAGTGGGGTACTA 58.298 43.478 0.00 0.00 40.53 1.82
2504 3056 5.294473 AGTATTTTGGGAGTGGGGTACTAT 58.706 41.667 0.00 0.00 40.53 2.12
2505 3057 4.790718 ATTTTGGGAGTGGGGTACTATC 57.209 45.455 0.00 0.00 40.53 2.08
2506 3058 3.502051 TTTGGGAGTGGGGTACTATCT 57.498 47.619 0.00 0.00 40.53 1.98
2507 3059 2.769602 TGGGAGTGGGGTACTATCTC 57.230 55.000 0.00 0.00 40.53 2.75
2508 3060 2.224077 TGGGAGTGGGGTACTATCTCT 58.776 52.381 0.00 0.00 40.53 3.10
2509 3061 2.091278 TGGGAGTGGGGTACTATCTCTG 60.091 54.545 0.00 0.00 40.53 3.35
2511 3063 2.959707 GGAGTGGGGTACTATCTCTGTG 59.040 54.545 0.00 0.00 40.53 3.66
2512 3064 3.627747 GGAGTGGGGTACTATCTCTGTGT 60.628 52.174 0.00 0.00 40.53 3.72
2513 3065 3.366396 AGTGGGGTACTATCTCTGTGTG 58.634 50.000 0.00 0.00 38.04 3.82
2514 3066 3.097614 GTGGGGTACTATCTCTGTGTGT 58.902 50.000 0.00 0.00 0.00 3.72
2516 3068 3.097614 GGGGTACTATCTCTGTGTGTGT 58.902 50.000 0.00 0.00 0.00 3.72
2517 3069 3.119101 GGGGTACTATCTCTGTGTGTGTG 60.119 52.174 0.00 0.00 0.00 3.82
2518 3070 3.510360 GGGTACTATCTCTGTGTGTGTGT 59.490 47.826 0.00 0.00 0.00 3.72
2519 3071 4.486090 GGTACTATCTCTGTGTGTGTGTG 58.514 47.826 0.00 0.00 0.00 3.82
2520 3072 4.022242 GGTACTATCTCTGTGTGTGTGTGT 60.022 45.833 0.00 0.00 0.00 3.72
2521 3073 3.982475 ACTATCTCTGTGTGTGTGTGTG 58.018 45.455 0.00 0.00 0.00 3.82
2523 3075 2.008752 TCTCTGTGTGTGTGTGTGTG 57.991 50.000 0.00 0.00 0.00 3.82
2525 3077 1.394572 CTCTGTGTGTGTGTGTGTGTG 59.605 52.381 0.00 0.00 0.00 3.82
2526 3078 1.155889 CTGTGTGTGTGTGTGTGTGT 58.844 50.000 0.00 0.00 0.00 3.72
2527 3079 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2528 3080 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2529 3081 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2533 3085 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2601 3153 7.870445 TGAGGACTAAATTTTAAAACCACATGC 59.130 33.333 1.97 0.00 0.00 4.06
2818 3410 2.382882 TCAAGCCTGACGATCTCTGAT 58.617 47.619 0.00 0.00 0.00 2.90
2852 3444 0.460284 CCTCCGTCAGTCCAAATCGG 60.460 60.000 0.00 0.00 42.12 4.18
3052 3644 1.369625 GTGTGTCCAACCGGATCATC 58.630 55.000 9.46 0.00 45.33 2.92
3220 3812 1.368850 GGAGTTGTCGCGTGCAAAC 60.369 57.895 17.19 12.25 0.00 2.93
3286 3878 5.487488 TGACCAGGAAACATACTTCACCTAT 59.513 40.000 0.00 0.00 0.00 2.57
3292 3884 9.396022 CAGGAAACATACTTCACCTATAATGTT 57.604 33.333 0.00 0.00 38.75 2.71
3334 3926 1.585267 GGCATGTCATTGGCGTGTCA 61.585 55.000 10.11 0.00 32.10 3.58
3427 4019 3.002656 CCAACTGCGATGTGTATGGATTC 59.997 47.826 0.00 0.00 0.00 2.52
3569 4161 4.232221 GAGAAATGTCCAATTGCAGTGTG 58.768 43.478 0.00 0.00 0.00 3.82
3646 4238 4.081406 TGAAACTGCCTGACAAAGCATAT 58.919 39.130 0.59 0.00 38.56 1.78
3751 4343 2.488937 CACATGCTCACTTTGGTATGCA 59.511 45.455 0.00 0.00 37.30 3.96
3871 4463 1.648467 GGATTGCTGGAGTTGCCGTC 61.648 60.000 0.00 0.00 40.66 4.79
3884 4476 2.967397 CCGTCGGTGGAGTTGCTA 59.033 61.111 2.08 0.00 0.00 3.49
3886 4478 1.445582 CGTCGGTGGAGTTGCTACC 60.446 63.158 0.00 0.00 44.20 3.18
3964 4556 5.041191 ACAGTATGAATCTTGCTAAGGGG 57.959 43.478 0.00 0.00 39.69 4.79
4237 4829 4.336280 TGCTCGTCTATGAGTATATGCCT 58.664 43.478 1.40 0.00 38.28 4.75
4274 4866 6.239430 GGATCATCATCTGTTTAGGAGTAGCA 60.239 42.308 0.00 0.00 0.00 3.49
4275 4867 5.907207 TCATCATCTGTTTAGGAGTAGCAC 58.093 41.667 0.00 0.00 0.00 4.40
4381 4973 7.672660 AGGGATTGCATCATACATTGTGATATT 59.327 33.333 0.00 0.00 34.68 1.28
4696 5288 6.103997 AGATGTGCAAACATTGATTGATTCC 58.896 36.000 10.50 0.00 0.00 3.01
4707 5299 5.356882 TTGATTGATTCCGAACTTGTCAC 57.643 39.130 0.00 0.00 0.00 3.67
4737 5329 1.636003 CCTAAGGGAGCTTGAAAGGGT 59.364 52.381 0.00 0.00 33.58 4.34
4826 5418 3.775316 TCAGATCCTAGAAGGGTTGGTTC 59.225 47.826 0.00 0.00 35.59 3.62
4827 5419 2.766828 AGATCCTAGAAGGGTTGGTTCG 59.233 50.000 0.00 0.00 35.59 3.95
4977 5572 9.703892 ATGTCTATCTGTATTTCTTGTATGAGC 57.296 33.333 0.00 0.00 0.00 4.26
4996 5591 3.090037 AGCGTATGGTCTCTTGTAGTGT 58.910 45.455 0.00 0.00 0.00 3.55
5014 5637 7.561251 TGTAGTGTGTATTGTTGGCATACTAT 58.439 34.615 0.00 0.00 38.44 2.12
5098 5728 4.992951 GCTACTCGGAGGACTTTGTTTTTA 59.007 41.667 10.23 0.00 0.00 1.52
5123 5753 8.477419 AAATTTCAGAAGGTGACCAAATCTTA 57.523 30.769 3.63 0.00 33.71 2.10
5135 5765 9.396022 GGTGACCAAATCTTAAAATATCTGAGA 57.604 33.333 0.00 0.00 0.00 3.27
5209 5839 1.145738 TCCCTTTTCTGAAAGCAGCCT 59.854 47.619 2.75 0.00 42.01 4.58
5244 5875 3.535561 CGTTGGCTAGAATCAGTCCAAT 58.464 45.455 0.00 0.00 35.57 3.16
5296 5927 3.940852 CTGTGTACTTATGCATGAGCCAA 59.059 43.478 17.78 1.86 41.13 4.52
5301 5932 6.038161 GTGTACTTATGCATGAGCCAATGTAA 59.962 38.462 17.78 0.00 41.13 2.41
5355 5986 9.675464 AACAGAATTGATAATTTTCCTACCGTA 57.325 29.630 0.00 0.00 0.00 4.02
5376 6007 3.320673 CCAAACTGGTCTAGACAGGTC 57.679 52.381 23.91 7.51 40.23 3.85
5378 6009 3.261897 CCAAACTGGTCTAGACAGGTCAT 59.738 47.826 23.91 11.14 40.23 3.06
5380 6011 5.411781 CAAACTGGTCTAGACAGGTCATAC 58.588 45.833 23.91 5.00 40.23 2.39
5400 6038 9.982651 GTCATACTGTTACATGATGGTATAAGT 57.017 33.333 0.00 0.00 33.92 2.24
5459 6097 2.038813 TGCCCGTCCTCATCCTCA 59.961 61.111 0.00 0.00 0.00 3.86
5551 6189 1.136110 ACATCTCGACACACACACACA 59.864 47.619 0.00 0.00 0.00 3.72
5552 6190 1.522676 CATCTCGACACACACACACAC 59.477 52.381 0.00 0.00 0.00 3.82
5553 6191 0.528470 TCTCGACACACACACACACA 59.472 50.000 0.00 0.00 0.00 3.72
5587 6225 1.628846 AGAACTAAGGACCATTGCCGT 59.371 47.619 0.00 0.00 0.00 5.68
5588 6226 2.039879 AGAACTAAGGACCATTGCCGTT 59.960 45.455 0.00 0.00 0.00 4.44
5589 6227 2.579410 ACTAAGGACCATTGCCGTTT 57.421 45.000 0.00 0.00 0.00 3.60
5590 6228 2.433436 ACTAAGGACCATTGCCGTTTC 58.567 47.619 0.00 0.00 0.00 2.78
5591 6229 2.039879 ACTAAGGACCATTGCCGTTTCT 59.960 45.455 0.00 0.00 0.00 2.52
5592 6230 1.247567 AAGGACCATTGCCGTTTCTG 58.752 50.000 0.00 0.00 0.00 3.02
5593 6231 0.110486 AGGACCATTGCCGTTTCTGT 59.890 50.000 0.00 0.00 0.00 3.41
5594 6232 0.240945 GGACCATTGCCGTTTCTGTG 59.759 55.000 0.00 0.00 0.00 3.66
5595 6233 0.240945 GACCATTGCCGTTTCTGTGG 59.759 55.000 0.00 0.00 0.00 4.17
5596 6234 0.467290 ACCATTGCCGTTTCTGTGGT 60.467 50.000 0.00 0.00 35.26 4.16
5597 6235 0.673437 CCATTGCCGTTTCTGTGGTT 59.327 50.000 0.00 0.00 0.00 3.67
5598 6236 1.883275 CCATTGCCGTTTCTGTGGTTA 59.117 47.619 0.00 0.00 0.00 2.85
5599 6237 2.351350 CCATTGCCGTTTCTGTGGTTAC 60.351 50.000 0.00 0.00 0.00 2.50
5600 6238 1.310904 TTGCCGTTTCTGTGGTTACC 58.689 50.000 0.00 0.00 0.00 2.85
5601 6239 0.180642 TGCCGTTTCTGTGGTTACCA 59.819 50.000 0.00 0.00 0.00 3.25
5602 6240 1.202830 TGCCGTTTCTGTGGTTACCAT 60.203 47.619 7.58 0.00 35.28 3.55
5603 6241 1.199097 GCCGTTTCTGTGGTTACCATG 59.801 52.381 7.58 4.14 35.28 3.66
5604 6242 2.773487 CCGTTTCTGTGGTTACCATGA 58.227 47.619 7.58 6.66 35.28 3.07
5605 6243 3.343617 CCGTTTCTGTGGTTACCATGAT 58.656 45.455 7.58 0.00 35.28 2.45
5606 6244 3.126858 CCGTTTCTGTGGTTACCATGATG 59.873 47.826 7.58 0.00 35.28 3.07
5607 6245 3.126858 CGTTTCTGTGGTTACCATGATGG 59.873 47.826 10.53 10.53 45.02 3.51
5608 6246 4.331968 GTTTCTGTGGTTACCATGATGGA 58.668 43.478 20.11 0.00 40.96 3.41
5609 6247 4.860802 TTCTGTGGTTACCATGATGGAT 57.139 40.909 20.11 5.13 40.96 3.41
5610 6248 4.422073 TCTGTGGTTACCATGATGGATC 57.578 45.455 20.11 7.54 40.96 3.36
5611 6249 3.779738 TCTGTGGTTACCATGATGGATCA 59.220 43.478 20.11 0.00 40.96 2.92
5612 6250 4.227073 TCTGTGGTTACCATGATGGATCAA 59.773 41.667 20.11 6.16 40.96 2.57
5613 6251 5.103982 TCTGTGGTTACCATGATGGATCAAT 60.104 40.000 20.11 0.00 40.96 2.57
5614 6252 4.888823 TGTGGTTACCATGATGGATCAATG 59.111 41.667 20.11 0.00 40.96 2.82
5615 6253 4.279169 GTGGTTACCATGATGGATCAATGG 59.721 45.833 20.11 12.08 40.96 3.16
5616 6254 4.079269 TGGTTACCATGATGGATCAATGGT 60.079 41.667 20.11 19.35 43.93 3.55
5617 6255 4.279169 GGTTACCATGATGGATCAATGGTG 59.721 45.833 20.11 7.69 42.79 4.17
5618 6256 3.675348 ACCATGATGGATCAATGGTGT 57.325 42.857 20.11 0.00 42.08 4.16
5619 6257 3.293337 ACCATGATGGATCAATGGTGTG 58.707 45.455 20.11 2.41 42.08 3.82
5620 6258 2.035449 CCATGATGGATCAATGGTGTGC 59.965 50.000 5.27 0.00 40.96 4.57
5621 6259 1.381522 TGATGGATCAATGGTGTGCG 58.618 50.000 0.00 0.00 33.08 5.34
5622 6260 1.339920 TGATGGATCAATGGTGTGCGT 60.340 47.619 0.00 0.00 33.08 5.24
5623 6261 1.064505 GATGGATCAATGGTGTGCGTG 59.935 52.381 0.00 0.00 0.00 5.34
5624 6262 1.137404 GGATCAATGGTGTGCGTGC 59.863 57.895 0.00 0.00 0.00 5.34
5625 6263 1.308069 GGATCAATGGTGTGCGTGCT 61.308 55.000 0.00 0.00 0.00 4.40
5626 6264 0.523072 GATCAATGGTGTGCGTGCTT 59.477 50.000 0.00 0.00 0.00 3.91
5627 6265 0.523072 ATCAATGGTGTGCGTGCTTC 59.477 50.000 0.00 0.00 0.00 3.86
5628 6266 1.081242 CAATGGTGTGCGTGCTTCC 60.081 57.895 0.00 0.00 0.00 3.46
5629 6267 2.616330 AATGGTGTGCGTGCTTCCG 61.616 57.895 0.00 0.00 0.00 4.30
5637 6275 4.201951 CGTGCTTCCGCCACTAAT 57.798 55.556 0.00 0.00 34.43 1.73
5638 6276 3.355816 CGTGCTTCCGCCACTAATA 57.644 52.632 0.00 0.00 34.43 0.98
5639 6277 1.209128 CGTGCTTCCGCCACTAATAG 58.791 55.000 0.00 0.00 34.43 1.73
5640 6278 1.470979 CGTGCTTCCGCCACTAATAGT 60.471 52.381 0.00 0.00 34.43 2.12
5641 6279 2.202566 GTGCTTCCGCCACTAATAGTC 58.797 52.381 0.00 0.00 34.43 2.59
5642 6280 1.138266 TGCTTCCGCCACTAATAGTCC 59.862 52.381 0.00 0.00 34.43 3.85
5643 6281 1.413077 GCTTCCGCCACTAATAGTCCT 59.587 52.381 0.00 0.00 0.00 3.85
5644 6282 2.803492 GCTTCCGCCACTAATAGTCCTG 60.803 54.545 0.00 0.00 0.00 3.86
5645 6283 2.154567 TCCGCCACTAATAGTCCTGT 57.845 50.000 0.00 0.00 0.00 4.00
5646 6284 2.029623 TCCGCCACTAATAGTCCTGTC 58.970 52.381 0.00 0.00 0.00 3.51
5647 6285 1.754803 CCGCCACTAATAGTCCTGTCA 59.245 52.381 0.00 0.00 0.00 3.58
5648 6286 2.481449 CCGCCACTAATAGTCCTGTCAC 60.481 54.545 0.00 0.00 0.00 3.67
5649 6287 2.165641 CGCCACTAATAGTCCTGTCACA 59.834 50.000 0.00 0.00 0.00 3.58
5650 6288 3.522553 GCCACTAATAGTCCTGTCACAC 58.477 50.000 0.00 0.00 0.00 3.82
5651 6289 3.195825 GCCACTAATAGTCCTGTCACACT 59.804 47.826 0.00 0.00 0.00 3.55
5754 6395 4.338879 ACTGAAGAAGAACATTGGATGGG 58.661 43.478 0.00 0.00 33.60 4.00
5782 6425 8.736751 TTTTCTCCGTTCTTTAATAAACATGC 57.263 30.769 0.00 0.00 0.00 4.06
5789 6432 7.298122 CGTTCTTTAATAAACATGCTGAGTGT 58.702 34.615 0.00 0.00 0.00 3.55
5896 6539 5.186996 TGCAGTGATTTGAAGGAGAAAAC 57.813 39.130 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.542492 TCACTCGAGACCAAGTACCC 58.458 55.000 21.68 0.00 0.00 3.69
1 2 3.576648 CTTTCACTCGAGACCAAGTACC 58.423 50.000 21.68 0.00 0.00 3.34
5 6 1.001406 AGGCTTTCACTCGAGACCAAG 59.999 52.381 21.68 16.88 0.00 3.61
23 24 7.625469 AGAGAAAATTAGAGTTAGACCCAAGG 58.375 38.462 0.00 0.00 0.00 3.61
27 28 7.098074 TCGAGAGAAAATTAGAGTTAGACCC 57.902 40.000 0.00 0.00 37.03 4.46
45 47 2.295909 GGGTCAGATCTTCCATCGAGAG 59.704 54.545 13.64 0.00 0.00 3.20
49 51 4.881019 ATTAGGGTCAGATCTTCCATCG 57.119 45.455 13.64 0.00 0.00 3.84
54 56 8.652290 AGTATAACCAATTAGGGTCAGATCTTC 58.348 37.037 0.00 0.00 41.32 2.87
90 92 2.220313 ACACAAAAACATTGCCATGGC 58.780 42.857 30.54 30.54 42.35 4.40
123 128 2.151202 ACAACTACGGGCAATGTCTTG 58.849 47.619 0.00 0.00 35.36 3.02
134 139 4.741342 AGATAAAGGTCGAACAACTACGG 58.259 43.478 1.87 0.00 0.00 4.02
135 140 6.701432 AAAGATAAAGGTCGAACAACTACG 57.299 37.500 1.87 0.00 0.00 3.51
194 199 3.056179 TCAAGCACCATTGTCGTCAGATA 60.056 43.478 0.00 0.00 0.00 1.98
259 264 7.068103 ACCATTTGACATTACAGAGACAACAAA 59.932 33.333 0.00 0.00 0.00 2.83
364 868 6.109156 TGGACATAGCCAACGTCAATATAT 57.891 37.500 0.00 0.00 34.31 0.86
373 877 3.469008 TTAGGATGGACATAGCCAACG 57.531 47.619 0.00 0.00 42.16 4.10
420 924 9.017509 AGCATCAAGGTGATACAAATATAATGG 57.982 33.333 0.00 0.00 34.28 3.16
483 989 1.562575 GCTGCACTGTGCCAAATTGC 61.563 55.000 28.17 17.82 44.23 3.56
499 1005 3.343972 CCACAGGTTGGTTCGCTG 58.656 61.111 0.00 0.00 41.10 5.18
520 1026 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
521 1027 1.628846 ACCACTGTCCACCTAACCATC 59.371 52.381 0.00 0.00 0.00 3.51
530 1036 2.354805 GGTTGAGGATACCACTGTCCAC 60.355 54.545 0.00 0.00 36.96 4.02
531 1037 1.906574 GGTTGAGGATACCACTGTCCA 59.093 52.381 0.00 0.00 36.96 4.02
554 1060 2.158475 AGCACCAAGATTTGAACCCTGA 60.158 45.455 0.00 0.00 0.00 3.86
568 1074 2.016318 CAGGAATAATGCGAGCACCAA 58.984 47.619 0.00 0.00 0.00 3.67
571 1077 1.953559 TCCAGGAATAATGCGAGCAC 58.046 50.000 0.00 0.00 0.00 4.40
573 1079 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
588 1094 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
589 1095 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
616 1122 1.270358 ACGTCTCTTCCCACTGAAAGC 60.270 52.381 0.00 0.00 37.60 3.51
617 1123 2.821991 ACGTCTCTTCCCACTGAAAG 57.178 50.000 0.00 0.00 42.29 2.62
644 1150 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
676 1182 4.182339 CCGGCATATCATCTCATCTTGAG 58.818 47.826 0.00 0.00 45.59 3.02
681 1187 2.093816 TGAGCCGGCATATCATCTCATC 60.094 50.000 31.54 13.19 0.00 2.92
682 1188 1.904537 TGAGCCGGCATATCATCTCAT 59.095 47.619 31.54 1.71 0.00 2.90
683 1189 1.274447 CTGAGCCGGCATATCATCTCA 59.726 52.381 31.54 19.35 0.00 3.27
684 1190 1.274728 ACTGAGCCGGCATATCATCTC 59.725 52.381 31.54 15.36 0.00 2.75
685 1191 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
686 1192 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
691 1197 0.395724 TGAGAGACTGAGCCGGCATA 60.396 55.000 31.54 16.21 0.00 3.14
702 1208 4.344679 CCCTATGAGCATCTTTGAGAGACT 59.655 45.833 0.00 0.00 37.17 3.24
710 1216 3.941629 TCCTACCCCTATGAGCATCTTT 58.058 45.455 0.00 0.00 34.92 2.52
711 1217 3.637821 TCCTACCCCTATGAGCATCTT 57.362 47.619 0.00 0.00 34.92 2.40
713 1219 3.055530 CACATCCTACCCCTATGAGCATC 60.056 52.174 0.00 0.00 0.00 3.91
724 1230 1.019278 CACACACGCACATCCTACCC 61.019 60.000 0.00 0.00 0.00 3.69
726 1232 1.787847 GCACACACGCACATCCTAC 59.212 57.895 0.00 0.00 0.00 3.18
727 1233 1.736282 CGCACACACGCACATCCTA 60.736 57.895 0.00 0.00 0.00 2.94
729 1235 2.764251 GAACGCACACACGCACATCC 62.764 60.000 0.00 0.00 36.19 3.51
731 1237 1.506309 ATGAACGCACACACGCACAT 61.506 50.000 0.00 0.00 36.19 3.21
733 1239 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
734 1240 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
735 1241 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
736 1242 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
748 1254 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
751 1257 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
752 1258 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
753 1259 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
762 1268 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
771 1277 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
773 1279 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
780 1286 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
847 1353 1.794785 TTTAGTCTCGACACGCGCG 60.795 57.895 30.96 30.96 40.61 6.86
874 1380 2.824041 CATACCGGCAGCACACCC 60.824 66.667 0.00 0.00 0.00 4.61
897 1403 2.463553 TATGGTTCGTTAGTCTCGCG 57.536 50.000 0.00 0.00 0.00 5.87
898 1404 5.738225 GCTATATATGGTTCGTTAGTCTCGC 59.262 44.000 0.00 0.00 0.00 5.03
899 1405 5.958372 CGCTATATATGGTTCGTTAGTCTCG 59.042 44.000 0.00 0.00 0.00 4.04
900 1406 6.960431 GTCGCTATATATGGTTCGTTAGTCTC 59.040 42.308 0.00 0.00 0.00 3.36
936 1442 4.262036 GCTGTACTATGATGGACCGATCAA 60.262 45.833 9.68 1.98 35.97 2.57
964 1470 0.036732 AGCTCGCCATGGACTCAAAA 59.963 50.000 18.40 0.00 0.00 2.44
1006 1519 1.881903 CGAGCAAGTGCAGGAGGAGA 61.882 60.000 6.00 0.00 45.16 3.71
1102 1617 0.840722 ATCAACTTCTGGTCCCCGGT 60.841 55.000 0.00 0.00 0.00 5.28
1124 1639 4.757354 CGAATTTGCCGCGCTGCA 62.757 61.111 23.14 23.14 40.07 4.41
1171 1686 5.471556 TTAAGAAGACGTGGTGGATGTTA 57.528 39.130 0.00 0.00 0.00 2.41
1172 1687 2.930826 AAGAAGACGTGGTGGATGTT 57.069 45.000 0.00 0.00 0.00 2.71
1173 1688 4.553330 ATTAAGAAGACGTGGTGGATGT 57.447 40.909 0.00 0.00 0.00 3.06
1176 1691 4.041198 AGGAAATTAAGAAGACGTGGTGGA 59.959 41.667 0.00 0.00 0.00 4.02
1178 1693 4.392138 GGAGGAAATTAAGAAGACGTGGTG 59.608 45.833 0.00 0.00 0.00 4.17
1179 1694 4.286291 AGGAGGAAATTAAGAAGACGTGGT 59.714 41.667 0.00 0.00 0.00 4.16
1181 1696 4.870991 GGAGGAGGAAATTAAGAAGACGTG 59.129 45.833 0.00 0.00 0.00 4.49
1193 1709 1.031112 AGGAGGAGGGAGGAGGAAAT 58.969 55.000 0.00 0.00 0.00 2.17
1196 1712 0.855855 TTCAGGAGGAGGGAGGAGGA 60.856 60.000 0.00 0.00 0.00 3.71
1197 1713 0.267356 ATTCAGGAGGAGGGAGGAGG 59.733 60.000 0.00 0.00 0.00 4.30
1198 1714 2.178984 ACTATTCAGGAGGAGGGAGGAG 59.821 54.545 0.00 0.00 0.00 3.69
1220 1736 0.109272 CAGTGTACACGGCGACTGAT 60.109 55.000 19.93 0.00 38.49 2.90
1313 1829 2.748605 TGCAACCCAAAAACATAAGCG 58.251 42.857 0.00 0.00 0.00 4.68
1314 1830 5.719173 TCTATGCAACCCAAAAACATAAGC 58.281 37.500 0.00 0.00 0.00 3.09
1349 1871 8.336801 TCAGACGACATACATATAGCTATTGT 57.663 34.615 12.39 16.68 0.00 2.71
1361 1883 7.304735 CAAATTCCAAATTCAGACGACATACA 58.695 34.615 0.00 0.00 0.00 2.29
1365 1887 4.022416 CCCAAATTCCAAATTCAGACGACA 60.022 41.667 0.00 0.00 0.00 4.35
1368 1890 4.485163 GACCCAAATTCCAAATTCAGACG 58.515 43.478 0.00 0.00 0.00 4.18
1370 1892 3.509575 CCGACCCAAATTCCAAATTCAGA 59.490 43.478 0.00 0.00 0.00 3.27
1371 1893 3.258123 ACCGACCCAAATTCCAAATTCAG 59.742 43.478 0.00 0.00 0.00 3.02
1388 1910 1.411394 TCACGTGAAAATCGACCGAC 58.589 50.000 17.62 0.00 0.00 4.79
1390 1912 1.126113 CCTTCACGTGAAAATCGACCG 59.874 52.381 29.32 15.94 33.07 4.79
1391 1913 2.409975 TCCTTCACGTGAAAATCGACC 58.590 47.619 29.32 0.00 33.07 4.79
1406 1928 2.372172 TCCTTCCACTGTTCCTTCCTTC 59.628 50.000 0.00 0.00 0.00 3.46
1415 1937 4.043435 AGCTCCTTATTTCCTTCCACTGTT 59.957 41.667 0.00 0.00 0.00 3.16
1417 1939 4.227864 AGCTCCTTATTTCCTTCCACTG 57.772 45.455 0.00 0.00 0.00 3.66
1430 1952 1.556911 CCTTCTCTGGCAAGCTCCTTA 59.443 52.381 0.00 0.00 0.00 2.69
1433 1955 4.633769 CCTTCTCTGGCAAGCTCC 57.366 61.111 0.00 0.00 0.00 4.70
1456 1978 6.070538 CCTCACACCCCTAGAATAGATAATGG 60.071 46.154 0.00 0.00 42.77 3.16
1467 1989 2.181773 ACCCCCTCACACCCCTAGA 61.182 63.158 0.00 0.00 0.00 2.43
1468 1990 1.995626 CACCCCCTCACACCCCTAG 60.996 68.421 0.00 0.00 0.00 3.02
1493 2015 2.058595 GGGTAGCCTTCTCCAGCGA 61.059 63.158 2.95 0.00 0.00 4.93
1494 2016 2.501610 GGGTAGCCTTCTCCAGCG 59.498 66.667 2.95 0.00 0.00 5.18
1495 2017 1.348775 ATGGGGTAGCCTTCTCCAGC 61.349 60.000 11.48 0.00 0.00 4.85
1496 2018 1.216990 AATGGGGTAGCCTTCTCCAG 58.783 55.000 11.48 0.00 0.00 3.86
1497 2019 2.579624 TAATGGGGTAGCCTTCTCCA 57.420 50.000 11.48 0.00 0.00 3.86
1498 2020 3.252351 AGATAATGGGGTAGCCTTCTCC 58.748 50.000 11.48 0.00 0.00 3.71
1559 2082 1.610086 TAACCCCACCGATGACCGT 60.610 57.895 0.00 0.00 36.31 4.83
1562 2085 0.464452 CCTCTAACCCCACCGATGAC 59.536 60.000 0.00 0.00 0.00 3.06
1569 2092 0.837940 GTCCATCCCTCTAACCCCAC 59.162 60.000 0.00 0.00 0.00 4.61
1685 2208 4.309950 ACCGACCGAACCACCTGC 62.310 66.667 0.00 0.00 0.00 4.85
1686 2209 2.357034 CACCGACCGAACCACCTG 60.357 66.667 0.00 0.00 0.00 4.00
1695 2218 3.041940 GTCAACTGCCACCGACCG 61.042 66.667 0.00 0.00 0.00 4.79
1711 2238 1.828660 CTACCCCCGATCGAGCTGT 60.829 63.158 18.66 10.42 0.00 4.40
1713 2240 0.824182 CTTCTACCCCCGATCGAGCT 60.824 60.000 18.66 0.00 0.00 4.09
1722 2249 3.711704 TCTCATGTTCATCTTCTACCCCC 59.288 47.826 0.00 0.00 0.00 5.40
1727 2254 6.151144 TCAGTCGTTCTCATGTTCATCTTCTA 59.849 38.462 0.00 0.00 0.00 2.10
1745 2272 3.244981 ACCTTCTTCTACCTCTCAGTCGT 60.245 47.826 0.00 0.00 0.00 4.34
1748 2275 2.829120 GCACCTTCTTCTACCTCTCAGT 59.171 50.000 0.00 0.00 0.00 3.41
1749 2276 2.167487 GGCACCTTCTTCTACCTCTCAG 59.833 54.545 0.00 0.00 0.00 3.35
1750 2277 2.180276 GGCACCTTCTTCTACCTCTCA 58.820 52.381 0.00 0.00 0.00 3.27
1769 2296 4.021104 TCGATGTAGATCCAATGGCTTAGG 60.021 45.833 0.00 0.00 0.00 2.69
1772 2299 4.422073 TTCGATGTAGATCCAATGGCTT 57.578 40.909 0.00 0.00 0.00 4.35
1773 2300 4.384056 CTTTCGATGTAGATCCAATGGCT 58.616 43.478 0.00 0.00 0.00 4.75
1777 2304 4.101585 TCAGCCTTTCGATGTAGATCCAAT 59.898 41.667 0.00 0.00 0.00 3.16
1791 2318 3.479949 GTCGAATCGTTTTCAGCCTTTC 58.520 45.455 1.52 0.00 0.00 2.62
1792 2319 2.225727 GGTCGAATCGTTTTCAGCCTTT 59.774 45.455 1.52 0.00 0.00 3.11
1795 2322 0.094730 CGGTCGAATCGTTTTCAGCC 59.905 55.000 1.52 0.00 0.00 4.85
1824 2351 8.299570 GCCTATATACCAATCAACTCAAAATGG 58.700 37.037 0.00 0.00 0.00 3.16
1830 2357 7.168219 GGAATGCCTATATACCAATCAACTCA 58.832 38.462 0.00 0.00 0.00 3.41
1831 2358 6.599638 GGGAATGCCTATATACCAATCAACTC 59.400 42.308 0.00 0.00 0.00 3.01
1838 2365 9.890915 AAAATAAAGGGAATGCCTATATACCAA 57.109 29.630 0.00 0.00 0.00 3.67
1902 2430 0.040425 CACGCCAAACCAACTAGCAC 60.040 55.000 0.00 0.00 0.00 4.40
1973 2502 8.908903 TGTTAGAAAAAGCCACTTCTGATAAAA 58.091 29.630 2.82 0.00 33.89 1.52
1975 2504 7.500892 TGTGTTAGAAAAAGCCACTTCTGATAA 59.499 33.333 2.82 0.00 33.89 1.75
1976 2505 6.995686 TGTGTTAGAAAAAGCCACTTCTGATA 59.004 34.615 2.82 0.00 33.89 2.15
1977 2506 5.827797 TGTGTTAGAAAAAGCCACTTCTGAT 59.172 36.000 2.82 0.00 33.89 2.90
1978 2507 5.189928 TGTGTTAGAAAAAGCCACTTCTGA 58.810 37.500 2.82 0.00 33.89 3.27
1979 2508 5.499139 TGTGTTAGAAAAAGCCACTTCTG 57.501 39.130 2.82 0.00 33.89 3.02
1980 2509 6.715347 ATTGTGTTAGAAAAAGCCACTTCT 57.285 33.333 0.00 0.00 35.99 2.85
2038 2575 1.323534 CGTGCGTTTATAGGAGTGTGC 59.676 52.381 0.00 0.00 0.00 4.57
2069 2606 7.455953 ACATCTCATAGGTGCTCATAGGAATAA 59.544 37.037 0.00 0.00 0.00 1.40
2073 2610 4.745351 ACATCTCATAGGTGCTCATAGGA 58.255 43.478 0.00 0.00 0.00 2.94
2087 2624 1.827344 TCTGCCGACTCAACATCTCAT 59.173 47.619 0.00 0.00 0.00 2.90
2094 2631 3.064820 TCAAAAAGTTCTGCCGACTCAAC 59.935 43.478 0.00 0.00 0.00 3.18
2100 2637 2.736721 CGATCTCAAAAAGTTCTGCCGA 59.263 45.455 0.00 0.00 0.00 5.54
2112 2649 4.556233 ACGATGACTTTGTCGATCTCAAA 58.444 39.130 10.80 10.80 40.11 2.69
2124 2661 2.818432 ACGAGGTGTCTACGATGACTTT 59.182 45.455 12.10 1.09 37.79 2.66
2127 2664 1.267433 CGACGAGGTGTCTACGATGAC 60.267 57.143 0.00 0.00 45.87 3.06
2133 2670 3.482722 TTTCATCGACGAGGTGTCTAC 57.517 47.619 9.58 0.00 45.87 2.59
2139 2676 3.512680 GAGACATTTTCATCGACGAGGT 58.487 45.455 9.58 0.00 0.00 3.85
2149 2686 4.389374 GTTCAGTGGAGGAGACATTTTCA 58.611 43.478 0.00 0.00 0.00 2.69
2152 2689 2.632996 TCGTTCAGTGGAGGAGACATTT 59.367 45.455 0.00 0.00 0.00 2.32
2154 2694 1.924731 TCGTTCAGTGGAGGAGACAT 58.075 50.000 0.00 0.00 0.00 3.06
2216 2759 9.095700 AGGTTTAAGTCCTAAATTTGGCATTAA 57.904 29.630 0.00 6.52 32.14 1.40
2219 2762 7.386059 CAAGGTTTAAGTCCTAAATTTGGCAT 58.614 34.615 0.00 0.00 34.56 4.40
2228 2771 3.723154 ACCCACCAAGGTTTAAGTCCTAA 59.277 43.478 2.43 0.00 36.44 2.69
2237 2780 0.775542 GGACCTACCCACCAAGGTTT 59.224 55.000 0.00 0.00 46.22 3.27
2250 2793 1.697432 CCTTGACTTGTGGTGGACCTA 59.303 52.381 0.00 0.00 36.82 3.08
2251 2794 0.474184 CCTTGACTTGTGGTGGACCT 59.526 55.000 0.00 0.00 36.82 3.85
2255 2798 0.466189 ACTGCCTTGACTTGTGGTGG 60.466 55.000 0.00 0.00 0.00 4.61
2257 2800 0.255890 ACACTGCCTTGACTTGTGGT 59.744 50.000 0.00 0.00 33.44 4.16
2258 2801 0.664761 CACACTGCCTTGACTTGTGG 59.335 55.000 0.00 0.00 35.05 4.17
2260 2803 0.546122 TCCACACTGCCTTGACTTGT 59.454 50.000 0.00 0.00 0.00 3.16
2261 2804 1.334869 GTTCCACACTGCCTTGACTTG 59.665 52.381 0.00 0.00 0.00 3.16
2272 2815 1.338107 TCGATCCACAGTTCCACACT 58.662 50.000 0.00 0.00 35.35 3.55
2273 2816 2.002586 CATCGATCCACAGTTCCACAC 58.997 52.381 0.00 0.00 0.00 3.82
2274 2817 1.066215 CCATCGATCCACAGTTCCACA 60.066 52.381 0.00 0.00 0.00 4.17
2275 2818 1.656652 CCATCGATCCACAGTTCCAC 58.343 55.000 0.00 0.00 0.00 4.02
2279 2822 0.392998 GGTGCCATCGATCCACAGTT 60.393 55.000 20.95 0.00 0.00 3.16
2281 2824 0.392863 TTGGTGCCATCGATCCACAG 60.393 55.000 20.95 1.21 0.00 3.66
2284 2827 1.451927 GCTTGGTGCCATCGATCCA 60.452 57.895 0.00 0.00 35.15 3.41
2287 2830 1.027357 GATTGCTTGGTGCCATCGAT 58.973 50.000 0.00 0.00 42.00 3.59
2289 2832 0.813184 AAGATTGCTTGGTGCCATCG 59.187 50.000 0.00 0.00 45.30 3.84
2301 2844 1.203287 GAAGCTCCCACCAAAGATTGC 59.797 52.381 0.00 0.00 0.00 3.56
2491 3043 3.381908 CACACAGAGATAGTACCCCACTC 59.618 52.174 0.00 0.00 38.80 3.51
2495 3047 3.097614 ACACACACAGAGATAGTACCCC 58.902 50.000 0.00 0.00 0.00 4.95
2496 3048 3.510360 ACACACACACAGAGATAGTACCC 59.490 47.826 0.00 0.00 0.00 3.69
2497 3049 4.022242 ACACACACACACAGAGATAGTACC 60.022 45.833 0.00 0.00 0.00 3.34
2498 3050 4.917998 CACACACACACACAGAGATAGTAC 59.082 45.833 0.00 0.00 0.00 2.73
2500 3052 3.384789 ACACACACACACACAGAGATAGT 59.615 43.478 0.00 0.00 0.00 2.12
2501 3053 3.737774 CACACACACACACACAGAGATAG 59.262 47.826 0.00 0.00 0.00 2.08
2502 3054 3.132111 ACACACACACACACACAGAGATA 59.868 43.478 0.00 0.00 0.00 1.98
2503 3055 2.093500 ACACACACACACACACAGAGAT 60.093 45.455 0.00 0.00 0.00 2.75
2504 3056 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
2505 3057 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
2506 3058 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
2507 3059 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
2508 3060 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2509 3061 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2511 3063 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2512 3064 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2513 3065 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2514 3066 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2516 3068 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
2517 3069 1.962412 CAACACACACACACACACAC 58.038 50.000 0.00 0.00 0.00 3.82
2518 3070 0.239613 GCAACACACACACACACACA 59.760 50.000 0.00 0.00 0.00 3.72
2519 3071 0.455972 GGCAACACACACACACACAC 60.456 55.000 0.00 0.00 0.00 3.82
2520 3072 0.890996 TGGCAACACACACACACACA 60.891 50.000 0.00 0.00 46.17 3.72
2521 3073 0.179166 CTGGCAACACACACACACAC 60.179 55.000 0.00 0.00 46.17 3.82
2523 3075 1.374560 TACTGGCAACACACACACAC 58.625 50.000 0.00 0.00 46.17 3.82
2525 3077 3.813166 AGTATTACTGGCAACACACACAC 59.187 43.478 0.00 0.00 46.17 3.82
2526 3078 4.079980 AGTATTACTGGCAACACACACA 57.920 40.909 0.00 0.00 46.17 3.72
2527 3079 4.992319 TGTAGTATTACTGGCAACACACAC 59.008 41.667 6.60 0.00 46.17 3.82
2528 3080 5.216614 TGTAGTATTACTGGCAACACACA 57.783 39.130 6.60 0.00 46.17 3.72
2529 3081 5.235516 ACTGTAGTATTACTGGCAACACAC 58.764 41.667 6.60 0.00 46.17 3.82
2533 3085 7.429636 TTCAAACTGTAGTATTACTGGCAAC 57.570 36.000 6.60 0.00 34.18 4.17
2641 3230 9.133627 CGGTGAAGTCAGTATAATTGATAGATG 57.866 37.037 0.00 0.00 0.00 2.90
2664 3253 7.604164 CAGCTATCCATGTATAAAAAGATCGGT 59.396 37.037 0.00 0.00 0.00 4.69
2818 3410 3.173668 CGGAGGACAATATTTCCGTCA 57.826 47.619 15.25 0.00 45.58 4.35
2852 3444 3.988379 TGAATTGCTTGACCAGACAAC 57.012 42.857 0.00 0.00 0.00 3.32
3052 3644 5.010922 TGGATCACCATTGTTTTTCCAAGAG 59.989 40.000 0.00 0.00 41.77 2.85
3079 3671 1.586154 CCACGGTGAACATTCCTGGC 61.586 60.000 10.28 0.00 0.00 4.85
3220 3812 0.926293 ATGGGGTGTTGGGATAGGTG 59.074 55.000 0.00 0.00 0.00 4.00
3301 3893 9.234827 CCAATGACATGCCTTGATAATATTCTA 57.765 33.333 0.00 0.00 0.00 2.10
3334 3926 5.279708 CCATACAGAAGACTGAGTTTGACCT 60.280 44.000 0.00 0.00 46.03 3.85
3646 4238 5.133383 TGCTGGTACCCTCAATACTAGTA 57.867 43.478 10.07 4.77 34.53 1.82
3751 4343 5.221126 GGTGTCTTGCAAATTCAGAAGTTCT 60.221 40.000 0.00 0.00 0.00 3.01
3871 4463 0.460311 CTAGGGTAGCAACTCCACCG 59.540 60.000 0.00 0.00 32.84 4.94
3884 4476 1.279271 GATCACTGCACAACCTAGGGT 59.721 52.381 14.81 2.44 37.65 4.34
3886 4478 1.645034 CGATCACTGCACAACCTAGG 58.355 55.000 7.41 7.41 0.00 3.02
3964 4556 9.102757 TCATTGTATTTAAAGCTGATCAGAGAC 57.897 33.333 27.04 11.74 0.00 3.36
4219 4811 7.101652 ACCATTAGGCATATACTCATAGACG 57.898 40.000 0.00 0.00 39.06 4.18
4237 4829 7.292319 ACAGATGATGATCCAATGAACCATTA 58.708 34.615 0.00 0.00 32.35 1.90
4274 4866 1.523758 CTCCAACTTAAAGGCGCAGT 58.476 50.000 10.83 0.00 0.00 4.40
4275 4867 0.169009 GCTCCAACTTAAAGGCGCAG 59.831 55.000 10.83 0.00 35.74 5.18
4647 5239 1.757699 CCACTAGCTTCCTCACTACCC 59.242 57.143 0.00 0.00 0.00 3.69
4707 5299 1.139853 GCTCCCTTAGGTCCACATCAG 59.860 57.143 0.00 0.00 0.00 2.90
4750 5342 3.378112 CACTGTCTTGAACACACCAACAT 59.622 43.478 0.00 0.00 33.24 2.71
4826 5418 1.442520 CAGGCGGCATTTCAACACG 60.443 57.895 13.08 0.00 0.00 4.49
4827 5419 0.031994 AACAGGCGGCATTTCAACAC 59.968 50.000 13.08 0.00 0.00 3.32
4954 5549 7.941919 ACGCTCATACAAGAAATACAGATAGA 58.058 34.615 0.00 0.00 0.00 1.98
4968 5563 4.159693 ACAAGAGACCATACGCTCATACAA 59.840 41.667 0.00 0.00 33.62 2.41
4977 5572 4.436242 ACACACTACAAGAGACCATACG 57.564 45.455 0.00 0.00 0.00 3.06
4996 5591 9.620259 TCACATAAATAGTATGCCAACAATACA 57.380 29.630 0.00 0.00 0.00 2.29
5014 5637 7.994425 ACAACCAGATACAACATCACATAAA 57.006 32.000 0.00 0.00 0.00 1.40
5032 5655 8.893219 TTGCAAAACAAAATATGATACAACCA 57.107 26.923 0.00 0.00 34.56 3.67
5098 5728 6.983906 AGATTTGGTCACCTTCTGAAATTT 57.016 33.333 0.00 0.00 0.00 1.82
5163 5793 4.216687 CCACACCGGAAAAAGTAAATAGCA 59.783 41.667 9.46 0.00 36.56 3.49
5209 5839 1.471119 CCAACGGCTAGACCTGTAGA 58.529 55.000 0.00 0.00 35.61 2.59
5244 5875 4.002982 CACATGAACAAGCCAGTAAGCTA 58.997 43.478 0.00 0.00 44.11 3.32
5296 5927 3.009473 ACCACTGCTCTCACCAATTACAT 59.991 43.478 0.00 0.00 0.00 2.29
5301 5932 5.435686 TTATAACCACTGCTCTCACCAAT 57.564 39.130 0.00 0.00 0.00 3.16
5376 6007 9.129209 CGACTTATACCATCATGTAACAGTATG 57.871 37.037 0.00 0.00 46.00 2.39
5378 6009 8.454570 TCGACTTATACCATCATGTAACAGTA 57.545 34.615 0.00 0.00 0.00 2.74
5380 6011 8.642908 TTTCGACTTATACCATCATGTAACAG 57.357 34.615 0.00 0.00 0.00 3.16
5400 6038 1.403780 GGACTCGGCTTTAGCTTTCGA 60.404 52.381 0.00 1.99 41.70 3.71
5481 6119 3.881104 ACCCGGTGGTGTTGGACC 61.881 66.667 0.00 0.00 45.58 4.46
5551 6189 7.400339 TCCTTAGTTCTCTCATTTCTATGGTGT 59.600 37.037 0.00 0.00 32.40 4.16
5552 6190 7.708752 GTCCTTAGTTCTCTCATTTCTATGGTG 59.291 40.741 0.00 0.00 32.40 4.17
5553 6191 7.147637 GGTCCTTAGTTCTCTCATTTCTATGGT 60.148 40.741 0.00 0.00 32.40 3.55
5587 6225 4.649267 TCCATCATGGTAACCACAGAAA 57.351 40.909 2.79 0.00 39.03 2.52
5588 6226 4.227073 TGATCCATCATGGTAACCACAGAA 59.773 41.667 2.79 0.00 39.03 3.02
5589 6227 3.779738 TGATCCATCATGGTAACCACAGA 59.220 43.478 2.79 0.00 39.03 3.41
5590 6228 4.155063 TGATCCATCATGGTAACCACAG 57.845 45.455 2.79 0.00 39.03 3.66
5591 6229 4.582973 TTGATCCATCATGGTAACCACA 57.417 40.909 2.79 0.00 39.03 4.17
5592 6230 4.279169 CCATTGATCCATCATGGTAACCAC 59.721 45.833 2.79 0.00 39.03 4.16
5593 6231 4.079269 ACCATTGATCCATCATGGTAACCA 60.079 41.667 16.07 0.00 41.98 3.67
5594 6232 4.279169 CACCATTGATCCATCATGGTAACC 59.721 45.833 16.71 0.00 41.93 2.85
5595 6233 4.889409 ACACCATTGATCCATCATGGTAAC 59.111 41.667 16.71 0.00 41.93 2.50
5596 6234 4.888823 CACACCATTGATCCATCATGGTAA 59.111 41.667 16.71 0.00 41.93 2.85
5597 6235 4.463070 CACACCATTGATCCATCATGGTA 58.537 43.478 16.71 0.00 41.93 3.25
5598 6236 3.293337 CACACCATTGATCCATCATGGT 58.707 45.455 2.79 13.60 43.23 3.55
5599 6237 2.035449 GCACACCATTGATCCATCATGG 59.965 50.000 0.00 0.00 39.36 3.66
5600 6238 2.287368 CGCACACCATTGATCCATCATG 60.287 50.000 0.00 0.00 36.56 3.07
5601 6239 1.951602 CGCACACCATTGATCCATCAT 59.048 47.619 0.00 0.00 36.56 2.45
5602 6240 1.339920 ACGCACACCATTGATCCATCA 60.340 47.619 0.00 0.00 34.44 3.07
5603 6241 1.064505 CACGCACACCATTGATCCATC 59.935 52.381 0.00 0.00 0.00 3.51
5604 6242 1.097232 CACGCACACCATTGATCCAT 58.903 50.000 0.00 0.00 0.00 3.41
5605 6243 1.585267 GCACGCACACCATTGATCCA 61.585 55.000 0.00 0.00 0.00 3.41
5606 6244 1.137404 GCACGCACACCATTGATCC 59.863 57.895 0.00 0.00 0.00 3.36
5607 6245 0.523072 AAGCACGCACACCATTGATC 59.477 50.000 0.00 0.00 0.00 2.92
5608 6246 0.523072 GAAGCACGCACACCATTGAT 59.477 50.000 0.00 0.00 0.00 2.57
5609 6247 1.514678 GGAAGCACGCACACCATTGA 61.515 55.000 0.00 0.00 0.00 2.57
5610 6248 1.081242 GGAAGCACGCACACCATTG 60.081 57.895 0.00 0.00 0.00 2.82
5611 6249 2.616330 CGGAAGCACGCACACCATT 61.616 57.895 0.00 0.00 0.00 3.16
5612 6250 3.049674 CGGAAGCACGCACACCAT 61.050 61.111 0.00 0.00 0.00 3.55
5624 6262 2.431057 ACAGGACTATTAGTGGCGGAAG 59.569 50.000 0.00 0.00 0.00 3.46
5625 6263 2.429610 GACAGGACTATTAGTGGCGGAA 59.570 50.000 0.00 0.00 0.00 4.30
5626 6264 2.029623 GACAGGACTATTAGTGGCGGA 58.970 52.381 0.00 0.00 0.00 5.54
5627 6265 1.754803 TGACAGGACTATTAGTGGCGG 59.245 52.381 0.00 0.00 0.00 6.13
5628 6266 2.165641 TGTGACAGGACTATTAGTGGCG 59.834 50.000 0.00 0.00 0.00 5.69
5629 6267 3.195825 AGTGTGACAGGACTATTAGTGGC 59.804 47.826 0.00 0.00 0.00 5.01
5630 6268 4.142138 GGAGTGTGACAGGACTATTAGTGG 60.142 50.000 0.00 0.00 0.00 4.00
5631 6269 4.142138 GGGAGTGTGACAGGACTATTAGTG 60.142 50.000 0.00 0.00 0.00 2.74
5632 6270 4.024670 GGGAGTGTGACAGGACTATTAGT 58.975 47.826 0.00 0.00 0.00 2.24
5633 6271 3.066900 CGGGAGTGTGACAGGACTATTAG 59.933 52.174 0.00 0.00 0.00 1.73
5634 6272 3.021695 CGGGAGTGTGACAGGACTATTA 58.978 50.000 0.00 0.00 0.00 0.98
5635 6273 1.825474 CGGGAGTGTGACAGGACTATT 59.175 52.381 0.00 0.00 0.00 1.73
5636 6274 1.005569 TCGGGAGTGTGACAGGACTAT 59.994 52.381 0.00 0.00 0.00 2.12
5637 6275 0.402887 TCGGGAGTGTGACAGGACTA 59.597 55.000 0.00 0.00 0.00 2.59
5638 6276 0.251832 ATCGGGAGTGTGACAGGACT 60.252 55.000 0.00 0.00 0.00 3.85
5639 6277 0.173708 GATCGGGAGTGTGACAGGAC 59.826 60.000 0.00 0.00 0.00 3.85
5640 6278 0.251608 TGATCGGGAGTGTGACAGGA 60.252 55.000 0.00 0.00 0.00 3.86
5641 6279 0.174389 CTGATCGGGAGTGTGACAGG 59.826 60.000 0.00 0.00 0.00 4.00
5642 6280 1.177401 TCTGATCGGGAGTGTGACAG 58.823 55.000 0.62 0.00 0.00 3.51
5643 6281 1.852633 ATCTGATCGGGAGTGTGACA 58.147 50.000 0.62 0.00 0.00 3.58
5644 6282 2.969628 AATCTGATCGGGAGTGTGAC 57.030 50.000 0.62 0.00 0.00 3.67
5645 6283 3.981071 AAAATCTGATCGGGAGTGTGA 57.019 42.857 0.62 0.00 0.00 3.58
5669 6310 5.192927 CCTTAATATGGAGCACAGGTTCAA 58.807 41.667 0.00 0.00 0.00 2.69
5782 6425 8.420374 TTTTCTGAAGTAGTAAACACACTCAG 57.580 34.615 0.00 0.00 33.07 3.35
5789 6432 7.439381 AGACCGATTTTCTGAAGTAGTAAACA 58.561 34.615 0.00 0.00 29.97 2.83
5878 6521 7.651808 TCTTGATGTTTTCTCCTTCAAATCAC 58.348 34.615 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.