Multiple sequence alignment - TraesCS1D01G367000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G367000 chr1D 100.000 3161 0 0 1 3161 446803038 446799878 0.000000e+00 5838.0
1 TraesCS1D01G367000 chr1D 94.203 276 12 2 10 285 110983420 110983149 4.880000e-113 418.0
2 TraesCS1D01G367000 chr1A 87.567 2413 127 63 592 2895 542826963 542824615 0.000000e+00 2634.0
3 TraesCS1D01G367000 chr1A 93.462 260 8 3 2910 3161 542824538 542824280 8.280000e-101 377.0
4 TraesCS1D01G367000 chr1B 88.901 1856 83 50 725 2492 612404892 612403072 0.000000e+00 2172.0
5 TraesCS1D01G367000 chr1B 91.154 260 11 6 2910 3161 612401455 612401200 3.020000e-90 342.0
6 TraesCS1D01G367000 chr1B 88.772 285 19 7 2616 2895 612401799 612401523 1.400000e-88 337.0
7 TraesCS1D01G367000 chr1B 96.809 94 3 0 1236 1329 612193094 612193001 1.170000e-34 158.0
8 TraesCS1D01G367000 chr1B 97.647 85 2 0 3077 3161 612192957 612192873 2.540000e-31 147.0
9 TraesCS1D01G367000 chr1B 83.099 142 9 11 592 733 612411235 612411109 7.160000e-22 115.0
10 TraesCS1D01G367000 chr1B 95.652 46 1 1 338 383 141723687 141723731 4.370000e-09 73.1
11 TraesCS1D01G367000 chr2D 95.238 294 4 5 8 292 478093806 478093514 1.030000e-124 457.0
12 TraesCS1D01G367000 chr2D 94.444 162 9 0 426 587 154947283 154947122 1.880000e-62 250.0
13 TraesCS1D01G367000 chr2D 93.939 165 10 0 424 588 501673745 501673909 1.880000e-62 250.0
14 TraesCS1D01G367000 chr5D 95.000 280 6 4 10 285 341634910 341635185 1.740000e-117 433.0
15 TraesCS1D01G367000 chr5D 94.056 286 13 3 7 292 209326475 209326756 6.260000e-117 431.0
16 TraesCS1D01G367000 chr5D 94.928 276 10 2 10 285 105860660 105860389 2.250000e-116 429.0
17 TraesCS1D01G367000 chr5D 91.480 223 18 1 61 282 29159574 29159352 3.960000e-79 305.0
18 TraesCS1D01G367000 chr5D 94.512 164 9 0 424 587 342525848 342525685 1.460000e-63 254.0
19 TraesCS1D01G367000 chr5D 91.954 174 13 1 424 596 94510579 94510406 3.150000e-60 243.0
20 TraesCS1D01G367000 chr7D 94.265 279 12 2 7 285 219883193 219883467 1.050000e-114 424.0
21 TraesCS1D01G367000 chr7D 94.512 164 9 0 424 587 217622460 217622297 1.460000e-63 254.0
22 TraesCS1D01G367000 chr7D 93.976 166 10 0 424 589 29828583 29828748 5.230000e-63 252.0
23 TraesCS1D01G367000 chr3D 94.035 285 8 4 10 285 330334354 330334638 1.050000e-114 424.0
24 TraesCS1D01G367000 chr3D 91.228 114 9 1 2046 2158 352108230 352108117 1.520000e-33 154.0
25 TraesCS1D01G367000 chr4D 94.565 276 10 3 10 285 307364498 307364768 3.770000e-114 422.0
26 TraesCS1D01G367000 chr4D 95.122 164 8 0 424 587 69396203 69396040 3.130000e-65 259.0
27 TraesCS1D01G367000 chr4D 95.031 161 8 0 424 584 481841880 481841720 1.460000e-63 254.0
28 TraesCS1D01G367000 chr4D 93.976 166 10 0 424 589 170665496 170665331 5.230000e-63 252.0
29 TraesCS1D01G367000 chr6A 93.841 276 13 3 10 285 55294825 55294554 2.270000e-111 412.0
30 TraesCS1D01G367000 chr5B 83.251 203 17 11 1052 1241 278893027 278893225 1.510000e-38 171.0
31 TraesCS1D01G367000 chr3B 91.818 110 8 1 2046 2154 450365010 450364901 5.460000e-33 152.0
32 TraesCS1D01G367000 chr3A 91.818 110 8 1 2046 2154 469831962 469831853 5.460000e-33 152.0
33 TraesCS1D01G367000 chr2B 89.873 79 8 0 1520 1598 732640269 732640347 5.580000e-18 102.0
34 TraesCS1D01G367000 chr2B 96.970 33 1 0 1433 1465 732640222 732640254 4.400000e-04 56.5
35 TraesCS1D01G367000 chr5A 90.667 75 6 1 337 410 438842597 438842671 7.220000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G367000 chr1D 446799878 446803038 3160 True 5838.000000 5838 100.0000 1 3161 1 chr1D.!!$R2 3160
1 TraesCS1D01G367000 chr1A 542824280 542826963 2683 True 1505.500000 2634 90.5145 592 3161 2 chr1A.!!$R1 2569
2 TraesCS1D01G367000 chr1B 612401200 612404892 3692 True 950.333333 2172 89.6090 725 3161 3 chr1B.!!$R3 2436

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 422 0.030235 GGACGTTTTTGCCTGGTCAC 59.970 55.0 0.00 0.0 0.00 3.67 F
453 454 0.034059 GGCATGTAGCGCCTATCTGT 59.966 55.0 2.29 0.0 46.56 3.41 F
505 506 0.036448 TGTCGGGCGTCCCATAAAAA 59.964 50.0 14.17 0.0 45.83 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 1665 0.792640 TCTACAAGGTCGTCGTCGTC 59.207 55.000 1.33 0.0 38.33 4.20 R
1608 1679 0.887836 ACTCGGTGTCGTGCTCTACA 60.888 55.000 0.00 0.0 37.69 2.74 R
2411 2535 1.647084 GAGACGCACAAACCACCAC 59.353 57.895 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.784525 GTGTGTGTGAGACTAGCCAC 58.215 55.000 0.00 0.00 0.00 5.01
20 21 1.068588 GTGTGTGTGAGACTAGCCACA 59.931 52.381 8.56 8.56 40.56 4.17
21 22 1.760029 TGTGTGTGAGACTAGCCACAA 59.240 47.619 12.79 4.15 43.84 3.33
22 23 2.368548 TGTGTGTGAGACTAGCCACAAT 59.631 45.455 12.79 0.00 43.84 2.71
23 24 2.738846 GTGTGTGAGACTAGCCACAATG 59.261 50.000 12.79 0.00 43.84 2.82
24 25 2.289631 TGTGTGAGACTAGCCACAATGG 60.290 50.000 12.79 0.00 43.84 3.16
25 26 1.278985 TGTGAGACTAGCCACAATGGG 59.721 52.381 9.80 0.00 39.97 4.00
37 38 4.777463 GCCACAATGGGTAGTAACATAGT 58.223 43.478 0.00 0.00 38.19 2.12
38 39 4.814771 GCCACAATGGGTAGTAACATAGTC 59.185 45.833 0.00 0.00 38.19 2.59
39 40 5.396436 GCCACAATGGGTAGTAACATAGTCT 60.396 44.000 0.00 0.00 38.19 3.24
40 41 6.650120 CCACAATGGGTAGTAACATAGTCTT 58.350 40.000 0.00 0.00 32.67 3.01
41 42 6.761714 CCACAATGGGTAGTAACATAGTCTTC 59.238 42.308 0.00 0.00 32.67 2.87
42 43 6.761714 CACAATGGGTAGTAACATAGTCTTCC 59.238 42.308 0.00 0.00 0.00 3.46
43 44 6.442564 ACAATGGGTAGTAACATAGTCTTCCA 59.557 38.462 0.00 0.00 0.00 3.53
44 45 7.127339 ACAATGGGTAGTAACATAGTCTTCCAT 59.873 37.037 0.00 0.00 33.28 3.41
45 46 6.479972 TGGGTAGTAACATAGTCTTCCATG 57.520 41.667 0.00 0.00 0.00 3.66
46 47 5.962031 TGGGTAGTAACATAGTCTTCCATGT 59.038 40.000 0.00 0.00 36.96 3.21
47 48 6.442564 TGGGTAGTAACATAGTCTTCCATGTT 59.557 38.462 5.40 5.40 45.07 2.71
48 49 7.620491 TGGGTAGTAACATAGTCTTCCATGTTA 59.380 37.037 3.65 3.65 42.17 2.41
55 56 8.596781 AACATAGTCTTCCATGTTACTAGTCT 57.403 34.615 0.00 0.00 42.17 3.24
56 57 9.696572 AACATAGTCTTCCATGTTACTAGTCTA 57.303 33.333 0.00 0.00 42.17 2.59
57 58 9.869667 ACATAGTCTTCCATGTTACTAGTCTAT 57.130 33.333 0.00 0.00 31.32 1.98
59 60 9.869667 ATAGTCTTCCATGTTACTAGTCTATGT 57.130 33.333 0.00 0.00 0.00 2.29
60 61 8.596781 AGTCTTCCATGTTACTAGTCTATGTT 57.403 34.615 0.00 0.00 0.00 2.71
61 62 9.696572 AGTCTTCCATGTTACTAGTCTATGTTA 57.303 33.333 0.00 0.00 0.00 2.41
62 63 9.733219 GTCTTCCATGTTACTAGTCTATGTTAC 57.267 37.037 0.00 0.00 0.00 2.50
63 64 9.696572 TCTTCCATGTTACTAGTCTATGTTACT 57.303 33.333 0.00 0.00 0.00 2.24
66 67 9.347240 TCCATGTTACTAGTCTATGTTACTACC 57.653 37.037 0.00 0.00 0.00 3.18
67 68 9.352191 CCATGTTACTAGTCTATGTTACTACCT 57.648 37.037 0.00 0.00 0.00 3.08
77 78 8.384718 AGTCTATGTTACTACCTCTATAGTGGG 58.615 40.741 21.82 16.23 36.09 4.61
78 79 7.611079 GTCTATGTTACTACCTCTATAGTGGGG 59.389 44.444 21.82 16.35 36.09 4.96
79 80 5.999987 TGTTACTACCTCTATAGTGGGGA 57.000 43.478 21.82 11.28 36.09 4.81
80 81 5.950023 TGTTACTACCTCTATAGTGGGGAG 58.050 45.833 21.82 20.04 36.09 4.30
81 82 5.434376 TGTTACTACCTCTATAGTGGGGAGT 59.566 44.000 24.72 24.72 36.09 3.85
82 83 6.621098 TGTTACTACCTCTATAGTGGGGAGTA 59.379 42.308 23.32 23.32 36.09 2.59
83 84 7.129349 TGTTACTACCTCTATAGTGGGGAGTAA 59.871 40.741 28.26 28.26 38.03 2.24
84 85 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
85 86 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
86 87 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
87 88 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
88 89 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
89 90 6.954684 ACCTCTATAGTGGGGAGTAACATATG 59.045 42.308 21.82 0.00 33.22 1.78
90 91 6.954684 CCTCTATAGTGGGGAGTAACATATGT 59.045 42.308 12.29 1.41 0.00 2.29
91 92 7.093727 CCTCTATAGTGGGGAGTAACATATGTG 60.094 44.444 9.63 0.00 0.00 3.21
92 93 7.302948 TCTATAGTGGGGAGTAACATATGTGT 58.697 38.462 9.63 2.63 41.28 3.72
93 94 4.487714 AGTGGGGAGTAACATATGTGTG 57.512 45.455 9.63 0.00 38.92 3.82
94 95 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
95 96 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
96 97 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
97 98 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
98 99 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
114 115 5.528043 TGGTAACATGCAACACTTCATTT 57.472 34.783 0.00 0.00 46.17 2.32
115 116 6.641169 TGGTAACATGCAACACTTCATTTA 57.359 33.333 0.00 0.00 46.17 1.40
116 117 7.225784 TGGTAACATGCAACACTTCATTTAT 57.774 32.000 0.00 0.00 46.17 1.40
117 118 7.665690 TGGTAACATGCAACACTTCATTTATT 58.334 30.769 0.00 0.00 46.17 1.40
118 119 8.797438 TGGTAACATGCAACACTTCATTTATTA 58.203 29.630 0.00 0.00 46.17 0.98
119 120 9.289303 GGTAACATGCAACACTTCATTTATTAG 57.711 33.333 0.00 0.00 0.00 1.73
120 121 9.289303 GTAACATGCAACACTTCATTTATTAGG 57.711 33.333 0.00 0.00 0.00 2.69
121 122 6.332630 ACATGCAACACTTCATTTATTAGGC 58.667 36.000 0.00 0.00 0.00 3.93
122 123 6.153340 ACATGCAACACTTCATTTATTAGGCT 59.847 34.615 0.00 0.00 0.00 4.58
123 124 7.339212 ACATGCAACACTTCATTTATTAGGCTA 59.661 33.333 0.00 0.00 0.00 3.93
124 125 7.880160 TGCAACACTTCATTTATTAGGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
125 126 8.972458 TGCAACACTTCATTTATTAGGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
126 127 9.056005 TGCAACACTTCATTTATTAGGCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
127 128 9.273016 GCAACACTTCATTTATTAGGCTATAGA 57.727 33.333 3.21 0.00 0.00 1.98
130 131 9.765795 ACACTTCATTTATTAGGCTATAGACAC 57.234 33.333 8.68 0.00 0.00 3.67
131 132 9.764363 CACTTCATTTATTAGGCTATAGACACA 57.236 33.333 8.68 0.00 0.00 3.72
137 138 8.833231 TTTATTAGGCTATAGACACATCTTGC 57.167 34.615 8.68 0.00 36.29 4.01
138 139 3.760580 AGGCTATAGACACATCTTGCC 57.239 47.619 8.68 0.00 41.26 4.52
139 140 3.312890 AGGCTATAGACACATCTTGCCT 58.687 45.455 8.68 0.00 43.78 4.75
140 141 3.713764 AGGCTATAGACACATCTTGCCTT 59.286 43.478 8.68 0.00 45.01 4.35
141 142 3.812053 GGCTATAGACACATCTTGCCTTG 59.188 47.826 3.21 0.00 39.50 3.61
142 143 4.443457 GGCTATAGACACATCTTGCCTTGA 60.443 45.833 3.21 0.00 39.50 3.02
143 144 5.303971 GCTATAGACACATCTTGCCTTGAT 58.696 41.667 3.21 0.00 36.29 2.57
144 145 6.459066 GCTATAGACACATCTTGCCTTGATA 58.541 40.000 3.21 0.00 36.29 2.15
145 146 7.102346 GCTATAGACACATCTTGCCTTGATAT 58.898 38.462 3.21 0.00 36.29 1.63
146 147 7.064371 GCTATAGACACATCTTGCCTTGATATG 59.936 40.741 3.21 0.00 36.29 1.78
147 148 5.108187 AGACACATCTTGCCTTGATATGT 57.892 39.130 0.00 0.00 34.70 2.29
150 151 4.916870 CACATCTTGCCTTGATATGTGTG 58.083 43.478 0.00 0.00 41.46 3.82
151 152 4.637091 CACATCTTGCCTTGATATGTGTGA 59.363 41.667 0.00 0.00 41.46 3.58
152 153 5.298527 CACATCTTGCCTTGATATGTGTGAT 59.701 40.000 0.00 0.00 41.46 3.06
153 154 5.298527 ACATCTTGCCTTGATATGTGTGATG 59.701 40.000 0.00 0.00 35.23 3.07
154 155 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
155 156 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
156 157 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
157 158 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
158 159 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
159 160 5.817296 TGCCTTGATATGTGTGATGTTACTC 59.183 40.000 0.00 0.00 0.00 2.59
160 161 5.817296 GCCTTGATATGTGTGATGTTACTCA 59.183 40.000 0.00 0.00 0.00 3.41
161 162 6.484643 GCCTTGATATGTGTGATGTTACTCAT 59.515 38.462 0.00 0.00 38.11 2.90
162 163 7.657354 GCCTTGATATGTGTGATGTTACTCATA 59.343 37.037 0.00 0.00 39.73 2.15
163 164 8.982685 CCTTGATATGTGTGATGTTACTCATAC 58.017 37.037 0.00 5.35 38.84 2.39
164 165 9.755804 CTTGATATGTGTGATGTTACTCATACT 57.244 33.333 10.75 3.32 38.84 2.12
170 171 8.803397 TGTGTGATGTTACTCATACTACTAGT 57.197 34.615 0.00 0.00 37.92 2.57
171 172 9.895138 TGTGTGATGTTACTCATACTACTAGTA 57.105 33.333 1.89 1.89 37.92 1.82
213 214 8.518702 ACTTTCCTCTCTTTCTTCATTTATTGC 58.481 33.333 0.00 0.00 0.00 3.56
214 215 8.641498 TTTCCTCTCTTTCTTCATTTATTGCT 57.359 30.769 0.00 0.00 0.00 3.91
215 216 8.641498 TTCCTCTCTTTCTTCATTTATTGCTT 57.359 30.769 0.00 0.00 0.00 3.91
216 217 8.048534 TCCTCTCTTTCTTCATTTATTGCTTG 57.951 34.615 0.00 0.00 0.00 4.01
217 218 6.750963 CCTCTCTTTCTTCATTTATTGCTTGC 59.249 38.462 0.00 0.00 0.00 4.01
218 219 6.624423 TCTCTTTCTTCATTTATTGCTTGCC 58.376 36.000 0.00 0.00 0.00 4.52
219 220 6.209192 TCTCTTTCTTCATTTATTGCTTGCCA 59.791 34.615 0.00 0.00 0.00 4.92
220 221 6.158598 TCTTTCTTCATTTATTGCTTGCCAC 58.841 36.000 0.00 0.00 0.00 5.01
221 222 5.465532 TTCTTCATTTATTGCTTGCCACA 57.534 34.783 0.00 0.00 0.00 4.17
222 223 5.664294 TCTTCATTTATTGCTTGCCACAT 57.336 34.783 0.00 0.00 0.00 3.21
223 224 5.653507 TCTTCATTTATTGCTTGCCACATC 58.346 37.500 0.00 0.00 0.00 3.06
224 225 5.185442 TCTTCATTTATTGCTTGCCACATCA 59.815 36.000 0.00 0.00 0.00 3.07
225 226 5.601583 TCATTTATTGCTTGCCACATCAT 57.398 34.783 0.00 0.00 0.00 2.45
226 227 5.593968 TCATTTATTGCTTGCCACATCATC 58.406 37.500 0.00 0.00 0.00 2.92
227 228 5.361571 TCATTTATTGCTTGCCACATCATCT 59.638 36.000 0.00 0.00 0.00 2.90
228 229 6.546772 TCATTTATTGCTTGCCACATCATCTA 59.453 34.615 0.00 0.00 0.00 1.98
229 230 5.756195 TTATTGCTTGCCACATCATCTAC 57.244 39.130 0.00 0.00 0.00 2.59
230 231 3.354948 TTGCTTGCCACATCATCTACT 57.645 42.857 0.00 0.00 0.00 2.57
231 232 3.354948 TGCTTGCCACATCATCTACTT 57.645 42.857 0.00 0.00 0.00 2.24
232 233 3.689347 TGCTTGCCACATCATCTACTTT 58.311 40.909 0.00 0.00 0.00 2.66
233 234 4.842574 TGCTTGCCACATCATCTACTTTA 58.157 39.130 0.00 0.00 0.00 1.85
234 235 5.439721 TGCTTGCCACATCATCTACTTTAT 58.560 37.500 0.00 0.00 0.00 1.40
235 236 5.528690 TGCTTGCCACATCATCTACTTTATC 59.471 40.000 0.00 0.00 0.00 1.75
236 237 5.762218 GCTTGCCACATCATCTACTTTATCT 59.238 40.000 0.00 0.00 0.00 1.98
237 238 6.931281 GCTTGCCACATCATCTACTTTATCTA 59.069 38.462 0.00 0.00 0.00 1.98
238 239 7.117523 GCTTGCCACATCATCTACTTTATCTAG 59.882 40.741 0.00 0.00 0.00 2.43
239 240 7.839680 TGCCACATCATCTACTTTATCTAGA 57.160 36.000 0.00 0.00 0.00 2.43
240 241 8.427902 TGCCACATCATCTACTTTATCTAGAT 57.572 34.615 10.73 10.73 32.13 1.98
241 242 9.533831 TGCCACATCATCTACTTTATCTAGATA 57.466 33.333 8.44 8.44 31.02 1.98
259 260 9.815306 ATCTAGATATGTGTGATGTTACTACCT 57.185 33.333 2.53 0.00 0.00 3.08
263 264 9.368416 AGATATGTGTGATGTTACTACCTATGT 57.632 33.333 0.00 0.00 0.00 2.29
264 265 9.982651 GATATGTGTGATGTTACTACCTATGTT 57.017 33.333 0.00 0.00 0.00 2.71
267 268 8.357290 TGTGTGATGTTACTACCTATGTTACT 57.643 34.615 0.00 0.00 0.00 2.24
268 269 8.809066 TGTGTGATGTTACTACCTATGTTACTT 58.191 33.333 0.00 0.00 0.00 2.24
269 270 9.649167 GTGTGATGTTACTACCTATGTTACTTT 57.351 33.333 0.00 0.00 0.00 2.66
270 271 9.865321 TGTGATGTTACTACCTATGTTACTTTC 57.135 33.333 0.00 0.00 0.00 2.62
271 272 9.865321 GTGATGTTACTACCTATGTTACTTTCA 57.135 33.333 0.00 0.00 0.00 2.69
277 278 9.661563 TTACTACCTATGTTACTTTCATTGTGG 57.338 33.333 0.00 0.00 0.00 4.17
278 279 7.110155 ACTACCTATGTTACTTTCATTGTGGG 58.890 38.462 0.00 0.00 0.00 4.61
279 280 5.887754 ACCTATGTTACTTTCATTGTGGGT 58.112 37.500 0.00 0.00 0.00 4.51
280 281 7.023171 ACCTATGTTACTTTCATTGTGGGTA 57.977 36.000 0.00 0.00 0.00 3.69
281 282 7.110155 ACCTATGTTACTTTCATTGTGGGTAG 58.890 38.462 0.00 0.00 0.00 3.18
282 283 7.110155 CCTATGTTACTTTCATTGTGGGTAGT 58.890 38.462 0.00 0.00 0.00 2.73
283 284 7.280205 CCTATGTTACTTTCATTGTGGGTAGTC 59.720 40.741 0.00 0.00 0.00 2.59
284 285 6.182507 TGTTACTTTCATTGTGGGTAGTCT 57.817 37.500 0.00 0.00 0.00 3.24
285 286 5.995282 TGTTACTTTCATTGTGGGTAGTCTG 59.005 40.000 0.00 0.00 0.00 3.51
286 287 4.974645 ACTTTCATTGTGGGTAGTCTGA 57.025 40.909 0.00 0.00 0.00 3.27
287 288 4.899502 ACTTTCATTGTGGGTAGTCTGAG 58.100 43.478 0.00 0.00 0.00 3.35
288 289 4.348168 ACTTTCATTGTGGGTAGTCTGAGT 59.652 41.667 0.00 0.00 0.00 3.41
289 290 4.537135 TTCATTGTGGGTAGTCTGAGTC 57.463 45.455 0.00 0.00 0.00 3.36
290 291 2.492088 TCATTGTGGGTAGTCTGAGTCG 59.508 50.000 0.00 0.00 0.00 4.18
291 292 0.601558 TTGTGGGTAGTCTGAGTCGC 59.398 55.000 0.00 0.00 0.00 5.19
292 293 0.251209 TGTGGGTAGTCTGAGTCGCT 60.251 55.000 0.00 0.00 0.00 4.93
293 294 0.171455 GTGGGTAGTCTGAGTCGCTG 59.829 60.000 0.00 0.00 0.00 5.18
294 295 0.037734 TGGGTAGTCTGAGTCGCTGA 59.962 55.000 0.00 0.00 0.00 4.26
295 296 1.174783 GGGTAGTCTGAGTCGCTGAA 58.825 55.000 0.00 0.00 0.00 3.02
296 297 1.544691 GGGTAGTCTGAGTCGCTGAAA 59.455 52.381 0.00 0.00 0.00 2.69
297 298 2.166664 GGGTAGTCTGAGTCGCTGAAAT 59.833 50.000 0.00 0.00 0.00 2.17
298 299 3.380637 GGGTAGTCTGAGTCGCTGAAATA 59.619 47.826 0.00 0.00 0.00 1.40
299 300 4.498345 GGGTAGTCTGAGTCGCTGAAATAG 60.498 50.000 0.00 0.00 0.00 1.73
300 301 4.096682 GGTAGTCTGAGTCGCTGAAATAGT 59.903 45.833 0.00 0.00 0.00 2.12
301 302 4.792521 AGTCTGAGTCGCTGAAATAGTT 57.207 40.909 0.00 0.00 0.00 2.24
302 303 4.489810 AGTCTGAGTCGCTGAAATAGTTG 58.510 43.478 0.00 0.00 0.00 3.16
303 304 3.061429 GTCTGAGTCGCTGAAATAGTTGC 59.939 47.826 0.00 0.00 0.00 4.17
307 308 2.916583 CGCTGAAATAGTTGCGTGC 58.083 52.632 0.09 0.00 42.93 5.34
308 309 0.853224 CGCTGAAATAGTTGCGTGCG 60.853 55.000 0.09 0.00 42.93 5.34
309 310 0.442310 GCTGAAATAGTTGCGTGCGA 59.558 50.000 0.00 0.00 0.00 5.10
310 311 1.062587 GCTGAAATAGTTGCGTGCGAT 59.937 47.619 0.00 0.00 0.00 4.58
311 312 2.476185 GCTGAAATAGTTGCGTGCGATT 60.476 45.455 0.00 0.00 0.00 3.34
312 313 3.093574 CTGAAATAGTTGCGTGCGATTG 58.906 45.455 0.00 0.00 0.00 2.67
313 314 1.840141 GAAATAGTTGCGTGCGATTGC 59.160 47.619 0.00 0.00 43.20 3.56
314 315 1.086696 AATAGTTGCGTGCGATTGCT 58.913 45.000 6.47 0.00 43.34 3.91
315 316 0.652592 ATAGTTGCGTGCGATTGCTC 59.347 50.000 6.47 1.21 43.34 4.26
316 317 1.358725 TAGTTGCGTGCGATTGCTCC 61.359 55.000 6.47 0.00 43.34 4.70
317 318 3.430862 TTGCGTGCGATTGCTCCC 61.431 61.111 6.47 0.00 43.34 4.30
320 321 3.554692 CGTGCGATTGCTCCCGTC 61.555 66.667 6.47 0.00 43.34 4.79
321 322 3.195698 GTGCGATTGCTCCCGTCC 61.196 66.667 6.47 0.00 43.34 4.79
322 323 3.700970 TGCGATTGCTCCCGTCCA 61.701 61.111 6.47 0.00 43.34 4.02
323 324 2.435938 GCGATTGCTCCCGTCCAA 60.436 61.111 0.00 0.00 38.39 3.53
324 325 1.819632 GCGATTGCTCCCGTCCAAT 60.820 57.895 0.00 0.00 38.39 3.16
325 326 1.776034 GCGATTGCTCCCGTCCAATC 61.776 60.000 0.00 0.00 42.29 2.67
326 327 0.461870 CGATTGCTCCCGTCCAATCA 60.462 55.000 12.20 0.00 44.63 2.57
327 328 1.750193 GATTGCTCCCGTCCAATCAA 58.250 50.000 8.11 0.00 44.11 2.57
328 329 2.301346 GATTGCTCCCGTCCAATCAAT 58.699 47.619 8.11 0.00 44.11 2.57
329 330 2.214376 TTGCTCCCGTCCAATCAATT 57.786 45.000 0.00 0.00 0.00 2.32
330 331 2.214376 TGCTCCCGTCCAATCAATTT 57.786 45.000 0.00 0.00 0.00 1.82
331 332 2.091541 TGCTCCCGTCCAATCAATTTC 58.908 47.619 0.00 0.00 0.00 2.17
332 333 2.290896 TGCTCCCGTCCAATCAATTTCT 60.291 45.455 0.00 0.00 0.00 2.52
333 334 2.356069 GCTCCCGTCCAATCAATTTCTC 59.644 50.000 0.00 0.00 0.00 2.87
334 335 3.609853 CTCCCGTCCAATCAATTTCTCA 58.390 45.455 0.00 0.00 0.00 3.27
335 336 4.009675 CTCCCGTCCAATCAATTTCTCAA 58.990 43.478 0.00 0.00 0.00 3.02
336 337 3.756434 TCCCGTCCAATCAATTTCTCAAC 59.244 43.478 0.00 0.00 0.00 3.18
337 338 3.758554 CCCGTCCAATCAATTTCTCAACT 59.241 43.478 0.00 0.00 0.00 3.16
338 339 4.218417 CCCGTCCAATCAATTTCTCAACTT 59.782 41.667 0.00 0.00 0.00 2.66
339 340 5.414454 CCCGTCCAATCAATTTCTCAACTTA 59.586 40.000 0.00 0.00 0.00 2.24
340 341 6.403636 CCCGTCCAATCAATTTCTCAACTTAG 60.404 42.308 0.00 0.00 0.00 2.18
341 342 6.371548 CCGTCCAATCAATTTCTCAACTTAGA 59.628 38.462 0.00 0.00 0.00 2.10
342 343 7.413438 CCGTCCAATCAATTTCTCAACTTAGAG 60.413 40.741 0.00 0.00 36.97 2.43
343 344 7.247019 GTCCAATCAATTTCTCAACTTAGAGC 58.753 38.462 0.00 0.00 35.59 4.09
344 345 6.942005 TCCAATCAATTTCTCAACTTAGAGCA 59.058 34.615 0.00 0.00 35.59 4.26
345 346 7.613022 TCCAATCAATTTCTCAACTTAGAGCAT 59.387 33.333 0.00 0.00 35.59 3.79
346 347 7.914346 CCAATCAATTTCTCAACTTAGAGCATC 59.086 37.037 0.00 0.00 35.59 3.91
357 358 3.805267 GAGCATCTCCAACTGCCG 58.195 61.111 0.00 0.00 39.22 5.69
358 359 2.437359 AGCATCTCCAACTGCCGC 60.437 61.111 0.00 0.00 39.22 6.53
359 360 3.869272 GCATCTCCAACTGCCGCG 61.869 66.667 0.00 0.00 32.15 6.46
360 361 3.869272 CATCTCCAACTGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
365 366 4.277593 CCAACTGCCGCGCCAAAA 62.278 61.111 0.00 0.00 0.00 2.44
366 367 2.279120 CAACTGCCGCGCCAAAAA 60.279 55.556 0.00 0.00 0.00 1.94
388 389 4.174129 GCGCGCGGTAAATTGGCT 62.174 61.111 33.06 0.00 0.00 4.75
389 390 2.483288 CGCGCGGTAAATTGGCTT 59.517 55.556 24.84 0.00 0.00 4.35
390 391 1.154112 CGCGCGGTAAATTGGCTTT 60.154 52.632 24.84 0.00 0.00 3.51
391 392 0.731174 CGCGCGGTAAATTGGCTTTT 60.731 50.000 24.84 0.00 0.00 2.27
392 393 1.466024 CGCGCGGTAAATTGGCTTTTA 60.466 47.619 24.84 0.00 0.00 1.52
393 394 2.597520 GCGCGGTAAATTGGCTTTTAA 58.402 42.857 8.83 0.00 0.00 1.52
394 395 3.183754 GCGCGGTAAATTGGCTTTTAAT 58.816 40.909 8.83 0.00 0.00 1.40
395 396 3.000177 GCGCGGTAAATTGGCTTTTAATG 60.000 43.478 8.83 0.00 0.00 1.90
396 397 3.000177 CGCGGTAAATTGGCTTTTAATGC 60.000 43.478 0.00 0.00 0.00 3.56
397 398 3.929610 GCGGTAAATTGGCTTTTAATGCA 59.070 39.130 5.25 0.00 0.00 3.96
398 399 4.201676 GCGGTAAATTGGCTTTTAATGCAC 60.202 41.667 5.25 0.00 0.00 4.57
399 400 4.031201 CGGTAAATTGGCTTTTAATGCACG 59.969 41.667 5.25 0.00 0.00 5.34
400 401 4.201676 GGTAAATTGGCTTTTAATGCACGC 60.202 41.667 5.25 0.00 0.00 5.34
401 402 1.627879 ATTGGCTTTTAATGCACGCG 58.372 45.000 3.53 3.53 0.00 6.01
402 403 0.387878 TTGGCTTTTAATGCACGCGG 60.388 50.000 12.47 0.00 0.00 6.46
403 404 1.516169 GGCTTTTAATGCACGCGGG 60.516 57.895 12.47 7.92 0.00 6.13
404 405 1.504446 GCTTTTAATGCACGCGGGA 59.496 52.632 15.48 0.67 0.00 5.14
405 406 0.796870 GCTTTTAATGCACGCGGGAC 60.797 55.000 15.48 3.63 0.00 4.46
418 419 3.850508 GGGACGTTTTTGCCTGGT 58.149 55.556 0.00 0.00 0.00 4.00
419 420 1.658114 GGGACGTTTTTGCCTGGTC 59.342 57.895 0.00 0.00 0.00 4.02
420 421 1.104577 GGGACGTTTTTGCCTGGTCA 61.105 55.000 0.00 0.00 0.00 4.02
421 422 0.030235 GGACGTTTTTGCCTGGTCAC 59.970 55.000 0.00 0.00 0.00 3.67
422 423 1.021968 GACGTTTTTGCCTGGTCACT 58.978 50.000 0.00 0.00 0.00 3.41
423 424 0.738389 ACGTTTTTGCCTGGTCACTG 59.262 50.000 0.00 0.00 0.00 3.66
424 425 1.021202 CGTTTTTGCCTGGTCACTGA 58.979 50.000 0.00 0.00 0.00 3.41
425 426 1.268539 CGTTTTTGCCTGGTCACTGAC 60.269 52.381 0.00 0.00 0.00 3.51
426 427 1.021202 TTTTTGCCTGGTCACTGACG 58.979 50.000 3.04 0.00 32.65 4.35
427 428 1.444119 TTTTGCCTGGTCACTGACGC 61.444 55.000 3.04 2.29 32.65 5.19
428 429 2.324014 TTTGCCTGGTCACTGACGCT 62.324 55.000 3.04 0.00 32.65 5.07
429 430 2.740055 GCCTGGTCACTGACGCTG 60.740 66.667 3.04 1.49 32.65 5.18
430 431 2.047844 CCTGGTCACTGACGCTGG 60.048 66.667 3.04 6.24 32.65 4.85
431 432 2.740055 CTGGTCACTGACGCTGGC 60.740 66.667 3.04 0.00 32.65 4.85
432 433 4.314440 TGGTCACTGACGCTGGCC 62.314 66.667 0.00 0.00 33.62 5.36
433 434 4.314440 GGTCACTGACGCTGGCCA 62.314 66.667 4.71 4.71 33.20 5.36
434 435 2.740055 GTCACTGACGCTGGCCAG 60.740 66.667 29.34 29.34 36.53 4.85
435 436 4.007644 TCACTGACGCTGGCCAGG 62.008 66.667 33.46 24.43 34.85 4.45
438 439 4.790962 CTGACGCTGGCCAGGCAT 62.791 66.667 33.46 15.09 0.00 4.40
441 442 3.680620 GACGCTGGCCAGGCATGTA 62.681 63.158 33.46 0.00 0.00 2.29
442 443 2.898840 CGCTGGCCAGGCATGTAG 60.899 66.667 33.46 7.49 0.00 2.74
443 444 3.214845 GCTGGCCAGGCATGTAGC 61.215 66.667 33.46 14.33 44.65 3.58
452 453 2.832931 GGCATGTAGCGCCTATCTG 58.167 57.895 2.29 0.00 46.56 2.90
453 454 0.034059 GGCATGTAGCGCCTATCTGT 59.966 55.000 2.29 0.00 46.56 3.41
454 455 1.143305 GCATGTAGCGCCTATCTGTG 58.857 55.000 2.29 0.00 0.00 3.66
455 456 1.269778 GCATGTAGCGCCTATCTGTGA 60.270 52.381 2.29 0.00 0.00 3.58
456 457 2.670479 CATGTAGCGCCTATCTGTGAG 58.330 52.381 2.29 0.00 0.00 3.51
457 458 1.032794 TGTAGCGCCTATCTGTGAGG 58.967 55.000 2.29 0.00 37.12 3.86
463 464 2.682893 CCTATCTGTGAGGCGTTGC 58.317 57.895 0.00 0.00 0.00 4.17
464 465 0.108186 CCTATCTGTGAGGCGTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
465 466 1.002366 CTATCTGTGAGGCGTTGCAC 58.998 55.000 0.00 0.00 35.63 4.57
466 467 0.320050 TATCTGTGAGGCGTTGCACA 59.680 50.000 0.00 0.00 42.25 4.57
468 469 2.189257 TGTGAGGCGTTGCACAGT 59.811 55.556 0.00 0.00 39.86 3.55
469 470 2.179547 TGTGAGGCGTTGCACAGTG 61.180 57.895 0.00 0.00 39.86 3.66
470 471 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
471 472 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
472 473 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
473 474 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
474 475 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
475 476 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
482 483 2.426651 ACAGTGTAGTGTGACGCCT 58.573 52.632 0.00 0.00 0.00 5.52
483 484 0.750850 ACAGTGTAGTGTGACGCCTT 59.249 50.000 0.00 0.00 0.00 4.35
484 485 1.269621 ACAGTGTAGTGTGACGCCTTC 60.270 52.381 0.00 0.00 0.00 3.46
485 486 0.039437 AGTGTAGTGTGACGCCTTCG 60.039 55.000 0.00 0.00 42.43 3.79
501 502 3.829044 CGTGTCGGGCGTCCCATA 61.829 66.667 14.17 0.00 45.83 2.74
502 503 2.580276 GTGTCGGGCGTCCCATAA 59.420 61.111 14.17 0.00 45.83 1.90
503 504 1.078988 GTGTCGGGCGTCCCATAAA 60.079 57.895 14.17 0.00 45.83 1.40
504 505 0.674269 GTGTCGGGCGTCCCATAAAA 60.674 55.000 14.17 0.00 45.83 1.52
505 506 0.036448 TGTCGGGCGTCCCATAAAAA 59.964 50.000 14.17 0.00 45.83 1.94
506 507 0.730840 GTCGGGCGTCCCATAAAAAG 59.269 55.000 14.17 0.00 45.83 2.27
507 508 0.614294 TCGGGCGTCCCATAAAAAGA 59.386 50.000 14.17 0.00 45.83 2.52
508 509 1.210967 TCGGGCGTCCCATAAAAAGAT 59.789 47.619 14.17 0.00 45.83 2.40
509 510 1.602377 CGGGCGTCCCATAAAAAGATC 59.398 52.381 14.17 0.00 45.83 2.75
510 511 2.650322 GGGCGTCCCATAAAAAGATCA 58.350 47.619 9.72 0.00 44.65 2.92
511 512 2.618709 GGGCGTCCCATAAAAAGATCAG 59.381 50.000 9.72 0.00 44.65 2.90
512 513 2.033424 GGCGTCCCATAAAAAGATCAGC 59.967 50.000 0.00 0.00 0.00 4.26
513 514 2.033424 GCGTCCCATAAAAAGATCAGCC 59.967 50.000 0.00 0.00 0.00 4.85
514 515 2.287915 CGTCCCATAAAAAGATCAGCCG 59.712 50.000 0.00 0.00 0.00 5.52
515 516 2.618709 GTCCCATAAAAAGATCAGCCGG 59.381 50.000 0.00 0.00 0.00 6.13
516 517 1.956477 CCCATAAAAAGATCAGCCGGG 59.044 52.381 2.18 0.00 0.00 5.73
517 518 2.654863 CCATAAAAAGATCAGCCGGGT 58.345 47.619 0.00 0.00 0.00 5.28
518 519 2.358898 CCATAAAAAGATCAGCCGGGTG 59.641 50.000 27.73 27.73 0.00 4.61
519 520 3.278574 CATAAAAAGATCAGCCGGGTGA 58.721 45.455 36.22 36.22 0.00 4.02
520 521 2.286365 AAAAAGATCAGCCGGGTGAA 57.714 45.000 37.45 22.07 0.00 3.18
521 522 2.286365 AAAAGATCAGCCGGGTGAAA 57.714 45.000 37.45 18.86 0.00 2.69
522 523 2.514458 AAAGATCAGCCGGGTGAAAT 57.486 45.000 37.45 26.00 0.00 2.17
523 524 3.644966 AAAGATCAGCCGGGTGAAATA 57.355 42.857 37.45 17.69 0.00 1.40
524 525 2.918712 AGATCAGCCGGGTGAAATAG 57.081 50.000 37.45 10.40 0.00 1.73
525 526 2.119495 AGATCAGCCGGGTGAAATAGT 58.881 47.619 37.45 22.53 0.00 2.12
526 527 2.505819 AGATCAGCCGGGTGAAATAGTT 59.494 45.455 37.45 21.77 0.00 2.24
527 528 2.871096 TCAGCCGGGTGAAATAGTTT 57.129 45.000 33.02 0.00 0.00 2.66
528 529 3.149005 TCAGCCGGGTGAAATAGTTTT 57.851 42.857 33.02 0.00 0.00 2.43
529 530 4.289238 TCAGCCGGGTGAAATAGTTTTA 57.711 40.909 33.02 7.08 0.00 1.52
530 531 4.004982 TCAGCCGGGTGAAATAGTTTTAC 58.995 43.478 33.02 0.00 0.00 2.01
531 532 3.004862 AGCCGGGTGAAATAGTTTTACG 58.995 45.455 4.72 0.00 30.62 3.18
532 533 2.096335 GCCGGGTGAAATAGTTTTACGG 59.904 50.000 2.18 0.00 41.52 4.02
533 534 2.679336 CCGGGTGAAATAGTTTTACGGG 59.321 50.000 0.00 0.00 35.50 5.28
534 535 2.096335 CGGGTGAAATAGTTTTACGGGC 59.904 50.000 0.00 0.00 30.62 6.13
535 536 3.083293 GGGTGAAATAGTTTTACGGGCA 58.917 45.455 0.00 0.00 30.62 5.36
536 537 3.128068 GGGTGAAATAGTTTTACGGGCAG 59.872 47.826 0.00 0.00 30.62 4.85
537 538 3.754850 GGTGAAATAGTTTTACGGGCAGT 59.245 43.478 0.00 0.00 30.62 4.40
538 539 4.216902 GGTGAAATAGTTTTACGGGCAGTT 59.783 41.667 0.00 0.00 30.62 3.16
539 540 5.388111 GTGAAATAGTTTTACGGGCAGTTC 58.612 41.667 0.00 0.00 0.00 3.01
540 541 5.049267 GTGAAATAGTTTTACGGGCAGTTCA 60.049 40.000 0.00 0.00 0.00 3.18
541 542 5.708230 TGAAATAGTTTTACGGGCAGTTCAT 59.292 36.000 0.00 0.00 0.00 2.57
542 543 6.207810 TGAAATAGTTTTACGGGCAGTTCATT 59.792 34.615 0.00 0.00 0.00 2.57
543 544 5.813080 ATAGTTTTACGGGCAGTTCATTC 57.187 39.130 0.00 0.00 0.00 2.67
544 545 3.751518 AGTTTTACGGGCAGTTCATTCT 58.248 40.909 0.00 0.00 0.00 2.40
545 546 3.502211 AGTTTTACGGGCAGTTCATTCTG 59.498 43.478 0.00 0.00 38.35 3.02
546 547 2.851263 TTACGGGCAGTTCATTCTGT 57.149 45.000 0.00 0.00 37.70 3.41
547 548 2.093306 TACGGGCAGTTCATTCTGTG 57.907 50.000 0.00 0.00 37.70 3.66
548 549 0.396435 ACGGGCAGTTCATTCTGTGA 59.604 50.000 0.00 0.00 37.70 3.58
549 550 1.003580 ACGGGCAGTTCATTCTGTGAT 59.996 47.619 0.00 0.00 36.54 3.06
550 551 2.086869 CGGGCAGTTCATTCTGTGATT 58.913 47.619 0.00 0.00 36.54 2.57
551 552 2.489329 CGGGCAGTTCATTCTGTGATTT 59.511 45.455 0.00 0.00 36.54 2.17
552 553 3.671433 CGGGCAGTTCATTCTGTGATTTG 60.671 47.826 0.00 0.00 36.54 2.32
553 554 3.507233 GGGCAGTTCATTCTGTGATTTGA 59.493 43.478 0.00 0.00 36.54 2.69
554 555 4.159135 GGGCAGTTCATTCTGTGATTTGAT 59.841 41.667 0.00 0.00 36.54 2.57
555 556 5.337009 GGGCAGTTCATTCTGTGATTTGATT 60.337 40.000 0.00 0.00 36.54 2.57
556 557 6.161381 GGCAGTTCATTCTGTGATTTGATTT 58.839 36.000 0.00 0.00 36.54 2.17
557 558 6.309737 GGCAGTTCATTCTGTGATTTGATTTC 59.690 38.462 0.00 0.00 36.54 2.17
558 559 6.033196 GCAGTTCATTCTGTGATTTGATTTCG 59.967 38.462 0.00 0.00 36.54 3.46
559 560 7.080099 CAGTTCATTCTGTGATTTGATTTCGT 58.920 34.615 0.00 0.00 36.54 3.85
560 561 7.269937 CAGTTCATTCTGTGATTTGATTTCGTC 59.730 37.037 0.00 0.00 36.54 4.20
561 562 6.182039 TCATTCTGTGATTTGATTTCGTCC 57.818 37.500 0.00 0.00 0.00 4.79
562 563 5.704978 TCATTCTGTGATTTGATTTCGTCCA 59.295 36.000 0.00 0.00 0.00 4.02
563 564 6.375174 TCATTCTGTGATTTGATTTCGTCCAT 59.625 34.615 0.00 0.00 0.00 3.41
564 565 7.552330 TCATTCTGTGATTTGATTTCGTCCATA 59.448 33.333 0.00 0.00 0.00 2.74
565 566 6.908870 TCTGTGATTTGATTTCGTCCATAG 57.091 37.500 0.00 0.00 0.00 2.23
566 567 5.817296 TCTGTGATTTGATTTCGTCCATAGG 59.183 40.000 0.00 0.00 0.00 2.57
567 568 5.496556 TGTGATTTGATTTCGTCCATAGGT 58.503 37.500 0.00 0.00 0.00 3.08
568 569 5.584649 TGTGATTTGATTTCGTCCATAGGTC 59.415 40.000 0.00 0.00 0.00 3.85
569 570 4.808895 TGATTTGATTTCGTCCATAGGTCG 59.191 41.667 0.00 0.00 35.73 4.79
570 571 4.459390 TTTGATTTCGTCCATAGGTCGA 57.541 40.909 1.42 1.42 40.91 4.20
576 577 3.880047 TCGTCCATAGGTCGAATTTGT 57.120 42.857 3.04 0.00 39.87 2.83
577 578 3.777478 TCGTCCATAGGTCGAATTTGTC 58.223 45.455 3.04 0.00 39.87 3.18
578 579 3.193903 TCGTCCATAGGTCGAATTTGTCA 59.806 43.478 3.04 0.00 39.87 3.58
579 580 3.930229 CGTCCATAGGTCGAATTTGTCAA 59.070 43.478 0.00 0.00 36.43 3.18
580 581 4.570772 CGTCCATAGGTCGAATTTGTCAAT 59.429 41.667 0.00 0.00 36.43 2.57
581 582 5.064707 CGTCCATAGGTCGAATTTGTCAATT 59.935 40.000 0.00 0.00 36.43 2.32
582 583 6.403200 CGTCCATAGGTCGAATTTGTCAATTT 60.403 38.462 0.00 0.00 36.43 1.82
583 584 7.312899 GTCCATAGGTCGAATTTGTCAATTTT 58.687 34.615 0.00 0.00 32.35 1.82
584 585 8.455682 GTCCATAGGTCGAATTTGTCAATTTTA 58.544 33.333 0.00 0.00 32.35 1.52
585 586 8.455682 TCCATAGGTCGAATTTGTCAATTTTAC 58.544 33.333 0.00 0.00 32.35 2.01
586 587 7.700656 CCATAGGTCGAATTTGTCAATTTTACC 59.299 37.037 12.99 12.99 37.54 2.85
587 588 6.020971 AGGTCGAATTTGTCAATTTTACCC 57.979 37.500 15.28 7.72 37.77 3.69
588 589 5.047590 AGGTCGAATTTGTCAATTTTACCCC 60.048 40.000 15.28 6.57 37.77 4.95
589 590 4.854839 GTCGAATTTGTCAATTTTACCCCG 59.145 41.667 0.00 0.00 32.35 5.73
590 591 3.610677 CGAATTTGTCAATTTTACCCCGC 59.389 43.478 0.00 0.00 32.35 6.13
630 632 5.216614 AGGATGATGACACTCATGAGATG 57.783 43.478 29.27 22.65 37.20 2.90
631 633 4.900054 AGGATGATGACACTCATGAGATGA 59.100 41.667 29.27 11.23 37.20 2.92
632 634 5.544562 AGGATGATGACACTCATGAGATGAT 59.455 40.000 29.27 15.40 37.20 2.45
636 638 2.158856 TGACACTCATGAGATGATGGGC 60.159 50.000 29.27 12.70 38.85 5.36
673 675 0.592754 GAGTGCGAGTGAGATACCGC 60.593 60.000 0.00 0.00 44.12 5.68
674 676 1.939785 GTGCGAGTGAGATACCGCG 60.940 63.158 0.00 0.00 45.63 6.46
675 677 2.404186 TGCGAGTGAGATACCGCGT 61.404 57.895 4.92 0.00 45.63 6.01
676 678 1.939785 GCGAGTGAGATACCGCGTG 60.940 63.158 4.92 0.00 38.51 5.34
681 683 2.101575 GAGATACCGCGTGCGTCA 59.898 61.111 13.70 0.34 37.81 4.35
717 719 1.138863 ATGGGAGGGGAGATGCCATC 61.139 60.000 0.00 0.00 44.72 3.51
718 720 2.533463 GGGAGGGGAGATGCCATCC 61.533 68.421 14.96 14.96 41.24 3.51
719 721 1.771746 GGAGGGGAGATGCCATCCA 60.772 63.158 17.90 0.00 41.47 3.41
720 722 1.138863 GGAGGGGAGATGCCATCCAT 61.139 60.000 17.90 0.00 41.47 3.41
721 723 0.037877 GAGGGGAGATGCCATCCATG 59.962 60.000 0.00 0.00 38.70 3.66
722 724 1.605738 GGGGAGATGCCATCCATGC 60.606 63.158 0.00 0.00 38.70 4.06
723 725 1.970114 GGGAGATGCCATCCATGCG 60.970 63.158 0.00 0.00 38.70 4.73
825 830 1.225704 CCAAGTCAGCTCCCCCATC 59.774 63.158 0.00 0.00 0.00 3.51
864 869 1.427819 CACCATTTAACGCTCGGCC 59.572 57.895 0.00 0.00 0.00 6.13
865 870 2.104253 ACCATTTAACGCTCGGCCG 61.104 57.895 22.12 22.12 0.00 6.13
867 872 3.199891 ATTTAACGCTCGGCCGCC 61.200 61.111 23.51 13.22 0.00 6.13
975 1002 2.788589 GGTCCCCTCCCTTCCTCT 59.211 66.667 0.00 0.00 0.00 3.69
1168 1224 2.047274 ATGACGGCGACCACCAAG 60.047 61.111 16.62 0.00 0.00 3.61
1170 1226 2.432628 GACGGCGACCACCAAGAG 60.433 66.667 16.62 0.00 0.00 2.85
1171 1227 4.681978 ACGGCGACCACCAAGAGC 62.682 66.667 16.62 0.00 0.00 4.09
1173 1229 2.743928 GGCGACCACCAAGAGCAG 60.744 66.667 0.00 0.00 0.00 4.24
1215 1271 1.818785 GCAGCAGCATCAGGAGGAC 60.819 63.158 0.00 0.00 41.58 3.85
1594 1665 2.063378 GTGCTGGAGGAGGAGGAGG 61.063 68.421 0.00 0.00 0.00 4.30
1638 1721 0.391597 ACACCGAGTTCACCGACAAT 59.608 50.000 0.00 0.00 0.00 2.71
1696 1779 0.262285 GGAGGGGGAGCAGTACTACT 59.738 60.000 0.00 0.00 0.00 2.57
1710 1793 1.367659 ACTACTGCGAGGAGTACGTC 58.632 55.000 0.00 0.00 0.00 4.34
1927 2010 2.959484 CGGGAGCAGGGCAAGAAGA 61.959 63.158 0.00 0.00 0.00 2.87
2040 2129 4.227134 CCGATGGAGGAGGCCGTG 62.227 72.222 0.00 0.00 0.00 4.94
2185 2274 0.592754 CGCCGGAGAAGAAGATCGTC 60.593 60.000 5.05 0.00 0.00 4.20
2199 2288 1.664321 ATCGTCCCGAGGTGCAGTAC 61.664 60.000 0.00 0.00 39.91 2.73
2229 2326 1.828832 CCGACGATTGACTAGCAGAC 58.171 55.000 0.00 0.00 0.00 3.51
2275 2375 0.458543 CCTGTGATTAGAGCGCGTGT 60.459 55.000 8.43 0.00 0.00 4.49
2276 2376 1.350193 CTGTGATTAGAGCGCGTGTT 58.650 50.000 8.43 0.00 0.00 3.32
2277 2377 2.526077 CTGTGATTAGAGCGCGTGTTA 58.474 47.619 8.43 0.00 0.00 2.41
2411 2535 2.093310 GTGAACAGTGAGTGATGATGCG 59.907 50.000 0.00 0.00 0.00 4.73
2509 2660 0.249398 TTTAAGTCCTGGGAGCGAGC 59.751 55.000 0.00 0.00 0.00 5.03
2572 3030 1.446099 GAGCGACGCTTCCATGTCA 60.446 57.895 25.30 0.00 39.88 3.58
2580 3038 0.721718 GCTTCCATGTCACTGTACGC 59.278 55.000 0.00 0.00 0.00 4.42
2588 3046 2.728015 CACTGTACGCACGTCGCA 60.728 61.111 0.00 0.00 42.60 5.10
2600 3058 2.689785 CGTCGCATGTGGTTGGCAT 61.690 57.895 6.39 0.00 0.00 4.40
2602 3060 0.038343 GTCGCATGTGGTTGGCATTT 60.038 50.000 6.39 0.00 0.00 2.32
2603 3061 1.201181 GTCGCATGTGGTTGGCATTTA 59.799 47.619 6.39 0.00 0.00 1.40
2604 3062 1.201181 TCGCATGTGGTTGGCATTTAC 59.799 47.619 6.39 0.00 0.00 2.01
2605 3063 1.735369 CGCATGTGGTTGGCATTTACC 60.735 52.381 0.00 0.00 34.93 2.85
2606 3064 1.405391 GCATGTGGTTGGCATTTACCC 60.405 52.381 4.45 0.00 33.34 3.69
2609 3067 0.543174 GTGGTTGGCATTTACCCCCA 60.543 55.000 4.45 0.00 33.34 4.96
2612 3070 3.871623 TTGGCATTTACCCCCAACA 57.128 47.368 0.00 0.00 33.92 3.33
2613 3071 1.343069 TTGGCATTTACCCCCAACAC 58.657 50.000 0.00 0.00 33.92 3.32
2614 3072 0.896019 TGGCATTTACCCCCAACACG 60.896 55.000 0.00 0.00 0.00 4.49
2619 3934 0.686224 TTTACCCCCAACACGACGAT 59.314 50.000 0.00 0.00 0.00 3.73
2747 4066 2.643551 GAATTCACCACGGTCCATGAT 58.356 47.619 0.00 0.00 0.00 2.45
2748 4067 3.433031 GGAATTCACCACGGTCCATGATA 60.433 47.826 7.93 0.00 0.00 2.15
2761 4080 3.047857 TCCATGATATGCCTCTTGTCCA 58.952 45.455 0.00 0.00 0.00 4.02
2906 4244 3.917760 CCGGTCGCCCTCCATCTC 61.918 72.222 0.00 0.00 0.00 2.75
2907 4245 3.917760 CGGTCGCCCTCCATCTCC 61.918 72.222 0.00 0.00 0.00 3.71
2908 4246 3.551407 GGTCGCCCTCCATCTCCC 61.551 72.222 0.00 0.00 0.00 4.30
2965 4355 2.265739 GACATGGGCGAGTGCAGA 59.734 61.111 0.00 0.00 45.35 4.26
2966 4356 1.812922 GACATGGGCGAGTGCAGAG 60.813 63.158 0.00 0.00 45.35 3.35
2967 4357 3.200593 CATGGGCGAGTGCAGAGC 61.201 66.667 0.00 0.00 45.35 4.09
2968 4358 3.709633 ATGGGCGAGTGCAGAGCA 61.710 61.111 9.70 0.00 45.35 4.26
2969 4359 3.040206 ATGGGCGAGTGCAGAGCAT 62.040 57.895 9.70 0.00 45.35 3.79
2970 4360 1.689243 ATGGGCGAGTGCAGAGCATA 61.689 55.000 9.70 0.00 45.35 3.14
2971 4361 1.070445 GGGCGAGTGCAGAGCATAT 59.930 57.895 9.70 0.00 45.35 1.78
2981 4371 3.004106 GTGCAGAGCATATCCAACATTCC 59.996 47.826 0.00 0.00 41.91 3.01
3000 4390 3.845259 GCGCCTATCCACGACCCA 61.845 66.667 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.068588 TGTGGCTAGTCTCACACACAC 59.931 52.381 10.23 0.00 38.76 3.82
1 2 1.408969 TGTGGCTAGTCTCACACACA 58.591 50.000 10.23 0.00 38.76 3.72
2 3 2.526304 TTGTGGCTAGTCTCACACAC 57.474 50.000 12.78 0.00 42.84 3.82
3 4 2.289631 CCATTGTGGCTAGTCTCACACA 60.290 50.000 12.78 8.14 42.67 3.72
4 5 2.350522 CCATTGTGGCTAGTCTCACAC 58.649 52.381 12.78 6.13 42.67 3.82
5 6 1.278985 CCCATTGTGGCTAGTCTCACA 59.721 52.381 0.00 5.25 41.47 3.58
6 7 1.279271 ACCCATTGTGGCTAGTCTCAC 59.721 52.381 0.00 2.71 35.79 3.51
7 8 1.656587 ACCCATTGTGGCTAGTCTCA 58.343 50.000 0.00 0.00 35.79 3.27
8 9 2.766828 ACTACCCATTGTGGCTAGTCTC 59.233 50.000 0.00 0.00 35.79 3.36
9 10 2.834113 ACTACCCATTGTGGCTAGTCT 58.166 47.619 0.00 0.00 35.79 3.24
10 11 4.081309 TGTTACTACCCATTGTGGCTAGTC 60.081 45.833 7.13 0.00 35.79 2.59
11 12 3.841845 TGTTACTACCCATTGTGGCTAGT 59.158 43.478 8.55 8.55 35.79 2.57
12 13 4.481368 TGTTACTACCCATTGTGGCTAG 57.519 45.455 0.00 0.00 35.79 3.42
13 14 5.664006 ACTATGTTACTACCCATTGTGGCTA 59.336 40.000 0.00 0.00 35.79 3.93
14 15 4.473559 ACTATGTTACTACCCATTGTGGCT 59.526 41.667 0.00 0.00 35.79 4.75
15 16 4.777463 ACTATGTTACTACCCATTGTGGC 58.223 43.478 0.00 0.00 35.79 5.01
16 17 6.235231 AGACTATGTTACTACCCATTGTGG 57.765 41.667 0.00 0.00 37.25 4.17
17 18 6.761714 GGAAGACTATGTTACTACCCATTGTG 59.238 42.308 0.00 0.00 29.34 3.33
18 19 6.442564 TGGAAGACTATGTTACTACCCATTGT 59.557 38.462 0.00 0.00 31.33 2.71
19 20 6.884832 TGGAAGACTATGTTACTACCCATTG 58.115 40.000 0.00 0.00 0.00 2.82
20 21 7.127339 ACATGGAAGACTATGTTACTACCCATT 59.873 37.037 0.00 0.00 43.78 3.16
21 22 6.615726 ACATGGAAGACTATGTTACTACCCAT 59.384 38.462 0.00 0.00 43.78 4.00
22 23 5.962031 ACATGGAAGACTATGTTACTACCCA 59.038 40.000 0.00 0.00 43.78 4.51
23 24 6.481434 ACATGGAAGACTATGTTACTACCC 57.519 41.667 0.00 0.00 43.78 3.69
33 34 9.869667 ACATAGACTAGTAACATGGAAGACTAT 57.130 33.333 0.00 0.42 0.00 2.12
34 35 9.696572 AACATAGACTAGTAACATGGAAGACTA 57.303 33.333 0.00 0.00 0.00 2.59
35 36 8.596781 AACATAGACTAGTAACATGGAAGACT 57.403 34.615 0.00 0.00 0.00 3.24
36 37 9.733219 GTAACATAGACTAGTAACATGGAAGAC 57.267 37.037 0.00 0.00 0.00 3.01
37 38 9.696572 AGTAACATAGACTAGTAACATGGAAGA 57.303 33.333 0.00 0.00 0.00 2.87
40 41 9.347240 GGTAGTAACATAGACTAGTAACATGGA 57.653 37.037 0.00 0.00 30.08 3.41
41 42 9.352191 AGGTAGTAACATAGACTAGTAACATGG 57.648 37.037 0.00 0.00 30.08 3.66
51 52 8.384718 CCCACTATAGAGGTAGTAACATAGACT 58.615 40.741 14.29 0.00 33.29 3.24
52 53 7.611079 CCCCACTATAGAGGTAGTAACATAGAC 59.389 44.444 14.29 0.00 33.29 2.59
53 54 7.518653 TCCCCACTATAGAGGTAGTAACATAGA 59.481 40.741 14.29 0.00 33.29 1.98
54 55 7.696981 TCCCCACTATAGAGGTAGTAACATAG 58.303 42.308 14.29 0.00 33.29 2.23
55 56 7.296628 ACTCCCCACTATAGAGGTAGTAACATA 59.703 40.741 14.29 0.00 33.29 2.29
56 57 6.104392 ACTCCCCACTATAGAGGTAGTAACAT 59.896 42.308 14.29 0.00 33.29 2.71
57 58 5.434376 ACTCCCCACTATAGAGGTAGTAACA 59.566 44.000 14.29 0.00 33.29 2.41
58 59 5.951204 ACTCCCCACTATAGAGGTAGTAAC 58.049 45.833 14.29 0.00 33.29 2.50
59 60 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
60 61 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
61 62 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
62 63 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
63 64 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
64 65 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
65 66 6.954684 ACATATGTTACTCCCCACTATAGAGG 59.045 42.308 6.78 8.10 31.70 3.69
66 67 7.451877 ACACATATGTTACTCCCCACTATAGAG 59.548 40.741 5.37 0.00 34.46 2.43
67 68 7.232737 CACACATATGTTACTCCCCACTATAGA 59.767 40.741 5.37 0.00 36.72 1.98
68 69 7.378966 CACACATATGTTACTCCCCACTATAG 58.621 42.308 5.37 0.00 36.72 1.31
69 70 6.269077 CCACACATATGTTACTCCCCACTATA 59.731 42.308 5.37 0.00 36.72 1.31
70 71 5.071788 CCACACATATGTTACTCCCCACTAT 59.928 44.000 5.37 0.00 36.72 2.12
71 72 4.407621 CCACACATATGTTACTCCCCACTA 59.592 45.833 5.37 0.00 36.72 2.74
72 73 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
73 74 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
74 75 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
75 76 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
76 77 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
77 78 6.238374 GCATGTTACCACACATATGTTACTCC 60.238 42.308 5.37 0.00 36.72 3.85
78 79 6.315144 TGCATGTTACCACACATATGTTACTC 59.685 38.462 5.37 0.00 36.72 2.59
79 80 6.176896 TGCATGTTACCACACATATGTTACT 58.823 36.000 5.37 0.00 36.72 2.24
80 81 6.429791 TGCATGTTACCACACATATGTTAC 57.570 37.500 5.37 0.00 36.72 2.50
81 82 6.431234 TGTTGCATGTTACCACACATATGTTA 59.569 34.615 5.37 0.00 36.72 2.41
82 83 5.242615 TGTTGCATGTTACCACACATATGTT 59.757 36.000 5.37 0.00 36.72 2.71
83 84 4.764308 TGTTGCATGTTACCACACATATGT 59.236 37.500 1.41 1.41 40.80 2.29
84 85 5.094812 GTGTTGCATGTTACCACACATATG 58.905 41.667 10.02 0.00 35.51 1.78
85 86 5.009631 AGTGTTGCATGTTACCACACATAT 58.990 37.500 15.74 0.00 35.51 1.78
86 87 4.393834 AGTGTTGCATGTTACCACACATA 58.606 39.130 15.74 0.00 35.51 2.29
87 88 3.221771 AGTGTTGCATGTTACCACACAT 58.778 40.909 15.74 1.51 37.93 3.21
88 89 2.649190 AGTGTTGCATGTTACCACACA 58.351 42.857 15.74 0.00 35.03 3.72
89 90 3.066064 TGAAGTGTTGCATGTTACCACAC 59.934 43.478 7.36 7.36 35.03 3.82
90 91 3.282885 TGAAGTGTTGCATGTTACCACA 58.717 40.909 0.00 0.00 37.31 4.17
91 92 3.980646 TGAAGTGTTGCATGTTACCAC 57.019 42.857 0.00 0.00 0.00 4.16
92 93 5.528043 AAATGAAGTGTTGCATGTTACCA 57.472 34.783 0.00 0.00 0.00 3.25
93 94 9.289303 CTAATAAATGAAGTGTTGCATGTTACC 57.711 33.333 0.00 0.00 0.00 2.85
94 95 9.289303 CCTAATAAATGAAGTGTTGCATGTTAC 57.711 33.333 0.00 0.00 0.00 2.50
95 96 7.973388 GCCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
96 97 6.813152 GCCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
97 98 6.153340 AGCCTAATAAATGAAGTGTTGCATGT 59.847 34.615 0.00 0.00 0.00 3.21
98 99 6.567050 AGCCTAATAAATGAAGTGTTGCATG 58.433 36.000 0.00 0.00 0.00 4.06
99 100 6.780457 AGCCTAATAAATGAAGTGTTGCAT 57.220 33.333 0.00 0.00 0.00 3.96
100 101 7.880160 ATAGCCTAATAAATGAAGTGTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
101 102 9.273016 TCTATAGCCTAATAAATGAAGTGTTGC 57.727 33.333 0.00 0.00 0.00 4.17
104 105 9.765795 GTGTCTATAGCCTAATAAATGAAGTGT 57.234 33.333 0.00 0.00 0.00 3.55
105 106 9.764363 TGTGTCTATAGCCTAATAAATGAAGTG 57.236 33.333 0.00 0.00 0.00 3.16
111 112 9.442047 GCAAGATGTGTCTATAGCCTAATAAAT 57.558 33.333 0.00 0.00 33.30 1.40
112 113 7.878127 GGCAAGATGTGTCTATAGCCTAATAAA 59.122 37.037 0.00 0.00 40.78 1.40
113 114 7.235606 AGGCAAGATGTGTCTATAGCCTAATAA 59.764 37.037 13.74 0.00 46.63 1.40
114 115 6.726299 AGGCAAGATGTGTCTATAGCCTAATA 59.274 38.462 13.74 0.00 46.63 0.98
115 116 5.545723 AGGCAAGATGTGTCTATAGCCTAAT 59.454 40.000 13.74 0.00 46.63 1.73
116 117 4.901849 AGGCAAGATGTGTCTATAGCCTAA 59.098 41.667 13.74 0.00 46.63 2.69
117 118 4.483950 AGGCAAGATGTGTCTATAGCCTA 58.516 43.478 13.74 0.00 46.63 3.93
118 119 3.312890 AGGCAAGATGTGTCTATAGCCT 58.687 45.455 11.05 11.05 41.69 4.58
119 120 3.760580 AGGCAAGATGTGTCTATAGCC 57.239 47.619 0.00 0.00 41.69 3.93
120 121 4.697514 TCAAGGCAAGATGTGTCTATAGC 58.302 43.478 0.00 0.00 43.11 2.97
121 122 8.093307 ACATATCAAGGCAAGATGTGTCTATAG 58.907 37.037 13.16 0.00 43.11 1.31
122 123 7.874528 CACATATCAAGGCAAGATGTGTCTATA 59.125 37.037 15.13 0.00 43.11 1.31
123 124 6.709397 CACATATCAAGGCAAGATGTGTCTAT 59.291 38.462 15.13 0.00 43.11 1.98
124 125 6.051074 CACATATCAAGGCAAGATGTGTCTA 58.949 40.000 15.13 0.00 43.11 2.59
126 127 5.165911 CACATATCAAGGCAAGATGTGTC 57.834 43.478 15.13 0.00 43.18 3.67
129 130 4.847198 TCACACATATCAAGGCAAGATGT 58.153 39.130 2.43 0.00 0.00 3.06
130 131 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
131 132 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
132 133 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
133 134 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
134 135 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
135 136 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
136 137 5.817296 TGAGTAACATCACACATATCAAGGC 59.183 40.000 0.00 0.00 0.00 4.35
137 138 8.982685 GTATGAGTAACATCACACATATCAAGG 58.017 37.037 0.00 0.00 40.07 3.61
138 139 9.755804 AGTATGAGTAACATCACACATATCAAG 57.244 33.333 0.00 0.00 40.07 3.02
144 145 9.409918 ACTAGTAGTATGAGTAACATCACACAT 57.590 33.333 0.00 0.00 40.07 3.21
145 146 8.803397 ACTAGTAGTATGAGTAACATCACACA 57.197 34.615 0.00 0.00 40.07 3.72
187 188 8.518702 GCAATAAATGAAGAAAGAGAGGAAAGT 58.481 33.333 0.00 0.00 0.00 2.66
188 189 8.738106 AGCAATAAATGAAGAAAGAGAGGAAAG 58.262 33.333 0.00 0.00 0.00 2.62
189 190 8.641498 AGCAATAAATGAAGAAAGAGAGGAAA 57.359 30.769 0.00 0.00 0.00 3.13
190 191 8.517878 CAAGCAATAAATGAAGAAAGAGAGGAA 58.482 33.333 0.00 0.00 0.00 3.36
191 192 7.362401 GCAAGCAATAAATGAAGAAAGAGAGGA 60.362 37.037 0.00 0.00 0.00 3.71
192 193 6.750963 GCAAGCAATAAATGAAGAAAGAGAGG 59.249 38.462 0.00 0.00 0.00 3.69
193 194 6.750963 GGCAAGCAATAAATGAAGAAAGAGAG 59.249 38.462 0.00 0.00 0.00 3.20
194 195 6.209192 TGGCAAGCAATAAATGAAGAAAGAGA 59.791 34.615 0.00 0.00 0.00 3.10
195 196 6.309737 GTGGCAAGCAATAAATGAAGAAAGAG 59.690 38.462 0.00 0.00 0.00 2.85
196 197 6.158598 GTGGCAAGCAATAAATGAAGAAAGA 58.841 36.000 0.00 0.00 0.00 2.52
197 198 5.927689 TGTGGCAAGCAATAAATGAAGAAAG 59.072 36.000 0.00 0.00 0.00 2.62
198 199 5.851720 TGTGGCAAGCAATAAATGAAGAAA 58.148 33.333 0.00 0.00 0.00 2.52
199 200 5.465532 TGTGGCAAGCAATAAATGAAGAA 57.534 34.783 0.00 0.00 0.00 2.52
200 201 5.185442 TGATGTGGCAAGCAATAAATGAAGA 59.815 36.000 0.00 0.00 0.00 2.87
201 202 5.412640 TGATGTGGCAAGCAATAAATGAAG 58.587 37.500 0.00 0.00 0.00 3.02
202 203 5.402997 TGATGTGGCAAGCAATAAATGAA 57.597 34.783 0.00 0.00 0.00 2.57
203 204 5.361571 AGATGATGTGGCAAGCAATAAATGA 59.638 36.000 0.00 0.00 0.00 2.57
204 205 5.597806 AGATGATGTGGCAAGCAATAAATG 58.402 37.500 0.00 0.00 0.00 2.32
205 206 5.864418 AGATGATGTGGCAAGCAATAAAT 57.136 34.783 0.00 0.00 0.00 1.40
206 207 5.887598 AGTAGATGATGTGGCAAGCAATAAA 59.112 36.000 0.00 0.00 0.00 1.40
207 208 5.439721 AGTAGATGATGTGGCAAGCAATAA 58.560 37.500 0.00 0.00 0.00 1.40
208 209 5.039920 AGTAGATGATGTGGCAAGCAATA 57.960 39.130 0.00 0.00 0.00 1.90
209 210 3.894759 AGTAGATGATGTGGCAAGCAAT 58.105 40.909 0.00 0.00 0.00 3.56
210 211 3.354948 AGTAGATGATGTGGCAAGCAA 57.645 42.857 0.00 0.00 0.00 3.91
211 212 3.354948 AAGTAGATGATGTGGCAAGCA 57.645 42.857 0.00 0.00 0.00 3.91
212 213 5.762218 AGATAAAGTAGATGATGTGGCAAGC 59.238 40.000 0.00 0.00 0.00 4.01
213 214 8.363390 TCTAGATAAAGTAGATGATGTGGCAAG 58.637 37.037 0.00 0.00 0.00 4.01
214 215 8.250143 TCTAGATAAAGTAGATGATGTGGCAA 57.750 34.615 0.00 0.00 0.00 4.52
215 216 7.839680 TCTAGATAAAGTAGATGATGTGGCA 57.160 36.000 0.00 0.00 0.00 4.92
233 234 9.815306 AGGTAGTAACATCACACATATCTAGAT 57.185 33.333 10.73 10.73 0.00 1.98
237 238 9.368416 ACATAGGTAGTAACATCACACATATCT 57.632 33.333 0.00 0.00 0.00 1.98
238 239 9.982651 AACATAGGTAGTAACATCACACATATC 57.017 33.333 0.00 0.00 0.00 1.63
241 242 8.978472 AGTAACATAGGTAGTAACATCACACAT 58.022 33.333 0.00 0.00 0.00 3.21
242 243 8.357290 AGTAACATAGGTAGTAACATCACACA 57.643 34.615 0.00 0.00 0.00 3.72
243 244 9.649167 AAAGTAACATAGGTAGTAACATCACAC 57.351 33.333 0.00 0.00 0.00 3.82
244 245 9.865321 GAAAGTAACATAGGTAGTAACATCACA 57.135 33.333 0.00 0.00 0.00 3.58
245 246 9.865321 TGAAAGTAACATAGGTAGTAACATCAC 57.135 33.333 0.00 0.00 0.00 3.06
251 252 9.661563 CCACAATGAAAGTAACATAGGTAGTAA 57.338 33.333 0.00 0.00 0.00 2.24
252 253 8.262227 CCCACAATGAAAGTAACATAGGTAGTA 58.738 37.037 0.00 0.00 0.00 1.82
253 254 7.110155 CCCACAATGAAAGTAACATAGGTAGT 58.890 38.462 0.00 0.00 0.00 2.73
254 255 7.110155 ACCCACAATGAAAGTAACATAGGTAG 58.890 38.462 0.00 0.00 0.00 3.18
255 256 7.023171 ACCCACAATGAAAGTAACATAGGTA 57.977 36.000 0.00 0.00 0.00 3.08
256 257 5.887754 ACCCACAATGAAAGTAACATAGGT 58.112 37.500 0.00 0.00 0.00 3.08
257 258 7.110155 ACTACCCACAATGAAAGTAACATAGG 58.890 38.462 0.00 0.00 0.00 2.57
258 259 8.041323 AGACTACCCACAATGAAAGTAACATAG 58.959 37.037 0.00 0.00 0.00 2.23
259 260 7.822334 CAGACTACCCACAATGAAAGTAACATA 59.178 37.037 0.00 0.00 0.00 2.29
260 261 6.655003 CAGACTACCCACAATGAAAGTAACAT 59.345 38.462 0.00 0.00 0.00 2.71
261 262 5.995282 CAGACTACCCACAATGAAAGTAACA 59.005 40.000 0.00 0.00 0.00 2.41
262 263 6.228258 TCAGACTACCCACAATGAAAGTAAC 58.772 40.000 0.00 0.00 0.00 2.50
263 264 6.042781 ACTCAGACTACCCACAATGAAAGTAA 59.957 38.462 0.00 0.00 0.00 2.24
264 265 5.542635 ACTCAGACTACCCACAATGAAAGTA 59.457 40.000 0.00 0.00 0.00 2.24
265 266 4.348168 ACTCAGACTACCCACAATGAAAGT 59.652 41.667 0.00 0.00 0.00 2.66
266 267 4.899502 ACTCAGACTACCCACAATGAAAG 58.100 43.478 0.00 0.00 0.00 2.62
267 268 4.560716 CGACTCAGACTACCCACAATGAAA 60.561 45.833 0.00 0.00 0.00 2.69
268 269 3.056821 CGACTCAGACTACCCACAATGAA 60.057 47.826 0.00 0.00 0.00 2.57
269 270 2.492088 CGACTCAGACTACCCACAATGA 59.508 50.000 0.00 0.00 0.00 2.57
270 271 2.881074 CGACTCAGACTACCCACAATG 58.119 52.381 0.00 0.00 0.00 2.82
271 272 1.204941 GCGACTCAGACTACCCACAAT 59.795 52.381 0.00 0.00 0.00 2.71
272 273 0.601558 GCGACTCAGACTACCCACAA 59.398 55.000 0.00 0.00 0.00 3.33
273 274 0.251209 AGCGACTCAGACTACCCACA 60.251 55.000 0.00 0.00 0.00 4.17
274 275 0.171455 CAGCGACTCAGACTACCCAC 59.829 60.000 0.00 0.00 0.00 4.61
275 276 0.037734 TCAGCGACTCAGACTACCCA 59.962 55.000 0.00 0.00 0.00 4.51
276 277 1.174783 TTCAGCGACTCAGACTACCC 58.825 55.000 0.00 0.00 0.00 3.69
277 278 3.512033 ATTTCAGCGACTCAGACTACC 57.488 47.619 0.00 0.00 0.00 3.18
278 279 5.238006 ACTATTTCAGCGACTCAGACTAC 57.762 43.478 0.00 0.00 0.00 2.73
279 280 5.641709 CAACTATTTCAGCGACTCAGACTA 58.358 41.667 0.00 0.00 0.00 2.59
280 281 4.489810 CAACTATTTCAGCGACTCAGACT 58.510 43.478 0.00 0.00 0.00 3.24
281 282 3.061429 GCAACTATTTCAGCGACTCAGAC 59.939 47.826 0.00 0.00 0.00 3.51
282 283 3.254060 GCAACTATTTCAGCGACTCAGA 58.746 45.455 0.00 0.00 0.00 3.27
283 284 3.648179 GCAACTATTTCAGCGACTCAG 57.352 47.619 0.00 0.00 0.00 3.35
290 291 0.442310 TCGCACGCAACTATTTCAGC 59.558 50.000 0.00 0.00 0.00 4.26
291 292 3.093574 CAATCGCACGCAACTATTTCAG 58.906 45.455 0.00 0.00 0.00 3.02
292 293 2.727607 GCAATCGCACGCAACTATTTCA 60.728 45.455 0.00 0.00 38.36 2.69
293 294 1.840141 GCAATCGCACGCAACTATTTC 59.160 47.619 0.00 0.00 38.36 2.17
294 295 1.468520 AGCAATCGCACGCAACTATTT 59.531 42.857 0.00 0.00 42.27 1.40
295 296 1.062587 GAGCAATCGCACGCAACTATT 59.937 47.619 0.00 0.00 42.27 1.73
296 297 0.652592 GAGCAATCGCACGCAACTAT 59.347 50.000 0.00 0.00 42.27 2.12
297 298 1.358725 GGAGCAATCGCACGCAACTA 61.359 55.000 0.00 0.00 42.27 2.24
298 299 2.680913 GGAGCAATCGCACGCAACT 61.681 57.895 0.00 0.00 42.27 3.16
299 300 2.202349 GGAGCAATCGCACGCAAC 60.202 61.111 0.00 0.00 42.27 4.17
300 301 3.430862 GGGAGCAATCGCACGCAA 61.431 61.111 0.00 0.00 40.61 4.85
303 304 3.554692 GACGGGAGCAATCGCACG 61.555 66.667 0.00 0.00 42.27 5.34
304 305 3.195698 GGACGGGAGCAATCGCAC 61.196 66.667 0.00 0.00 42.27 5.34
305 306 2.535485 ATTGGACGGGAGCAATCGCA 62.535 55.000 0.00 0.00 42.27 5.10
306 307 1.776034 GATTGGACGGGAGCAATCGC 61.776 60.000 0.00 0.00 32.46 4.58
307 308 0.461870 TGATTGGACGGGAGCAATCG 60.462 55.000 0.00 0.00 40.18 3.34
308 309 1.750193 TTGATTGGACGGGAGCAATC 58.250 50.000 0.00 0.00 38.79 2.67
309 310 2.442236 ATTGATTGGACGGGAGCAAT 57.558 45.000 0.00 0.00 0.00 3.56
310 311 2.214376 AATTGATTGGACGGGAGCAA 57.786 45.000 0.00 0.00 0.00 3.91
311 312 2.091541 GAAATTGATTGGACGGGAGCA 58.908 47.619 0.00 0.00 0.00 4.26
312 313 2.356069 GAGAAATTGATTGGACGGGAGC 59.644 50.000 0.00 0.00 0.00 4.70
313 314 3.609853 TGAGAAATTGATTGGACGGGAG 58.390 45.455 0.00 0.00 0.00 4.30
314 315 3.712016 TGAGAAATTGATTGGACGGGA 57.288 42.857 0.00 0.00 0.00 5.14
315 316 3.758554 AGTTGAGAAATTGATTGGACGGG 59.241 43.478 0.00 0.00 0.00 5.28
316 317 5.376854 AAGTTGAGAAATTGATTGGACGG 57.623 39.130 0.00 0.00 0.00 4.79
317 318 7.364522 TCTAAGTTGAGAAATTGATTGGACG 57.635 36.000 0.00 0.00 0.00 4.79
318 319 7.094634 TGCTCTAAGTTGAGAAATTGATTGGAC 60.095 37.037 6.53 0.00 36.23 4.02
319 320 6.942005 TGCTCTAAGTTGAGAAATTGATTGGA 59.058 34.615 6.53 0.00 36.23 3.53
320 321 7.149569 TGCTCTAAGTTGAGAAATTGATTGG 57.850 36.000 6.53 0.00 36.23 3.16
321 322 8.675504 AGATGCTCTAAGTTGAGAAATTGATTG 58.324 33.333 6.53 0.00 36.23 2.67
322 323 8.804912 AGATGCTCTAAGTTGAGAAATTGATT 57.195 30.769 6.53 0.00 36.23 2.57
323 324 7.498570 GGAGATGCTCTAAGTTGAGAAATTGAT 59.501 37.037 6.53 0.00 36.23 2.57
324 325 6.820656 GGAGATGCTCTAAGTTGAGAAATTGA 59.179 38.462 6.53 0.00 36.23 2.57
325 326 6.596888 TGGAGATGCTCTAAGTTGAGAAATTG 59.403 38.462 6.53 0.00 36.23 2.32
326 327 6.715280 TGGAGATGCTCTAAGTTGAGAAATT 58.285 36.000 6.53 0.00 36.23 1.82
327 328 6.305272 TGGAGATGCTCTAAGTTGAGAAAT 57.695 37.500 6.53 0.89 36.23 2.17
328 329 5.745312 TGGAGATGCTCTAAGTTGAGAAA 57.255 39.130 6.53 0.00 36.23 2.52
329 330 5.247110 AGTTGGAGATGCTCTAAGTTGAGAA 59.753 40.000 6.53 0.00 32.07 2.87
330 331 4.774726 AGTTGGAGATGCTCTAAGTTGAGA 59.225 41.667 6.53 0.00 32.07 3.27
331 332 4.869297 CAGTTGGAGATGCTCTAAGTTGAG 59.131 45.833 0.00 0.00 33.42 3.02
332 333 4.825422 CAGTTGGAGATGCTCTAAGTTGA 58.175 43.478 0.00 0.00 33.42 3.18
333 334 3.373439 GCAGTTGGAGATGCTCTAAGTTG 59.627 47.826 0.00 0.00 39.38 3.16
334 335 3.604582 GCAGTTGGAGATGCTCTAAGTT 58.395 45.455 0.00 0.00 39.38 2.66
335 336 2.093235 GGCAGTTGGAGATGCTCTAAGT 60.093 50.000 0.00 0.00 42.19 2.24
336 337 2.559440 GGCAGTTGGAGATGCTCTAAG 58.441 52.381 0.00 0.00 42.19 2.18
337 338 1.134699 CGGCAGTTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 42.19 2.10
338 339 0.461548 CGGCAGTTGGAGATGCTCTA 59.538 55.000 0.00 0.00 42.19 2.43
339 340 1.220206 CGGCAGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 42.19 4.09
340 341 2.467826 GCGGCAGTTGGAGATGCTC 61.468 63.158 0.00 0.00 42.19 4.26
341 342 2.437359 GCGGCAGTTGGAGATGCT 60.437 61.111 0.00 0.00 42.19 3.79
342 343 3.869272 CGCGGCAGTTGGAGATGC 61.869 66.667 0.00 0.00 41.80 3.91
343 344 3.869272 GCGCGGCAGTTGGAGATG 61.869 66.667 8.83 0.00 0.00 2.90
348 349 3.781770 TTTTTGGCGCGGCAGTTGG 62.782 57.895 34.14 0.00 0.00 3.77
349 350 2.279120 TTTTTGGCGCGGCAGTTG 60.279 55.556 34.14 0.00 0.00 3.16
371 372 3.677099 AAGCCAATTTACCGCGCGC 62.677 57.895 27.36 23.91 0.00 6.86
372 373 0.731174 AAAAGCCAATTTACCGCGCG 60.731 50.000 25.67 25.67 0.00 6.86
373 374 2.265647 TAAAAGCCAATTTACCGCGC 57.734 45.000 0.00 0.00 0.00 6.86
374 375 3.000177 GCATTAAAAGCCAATTTACCGCG 60.000 43.478 0.00 0.00 0.00 6.46
375 376 3.929610 TGCATTAAAAGCCAATTTACCGC 59.070 39.130 1.40 0.00 0.00 5.68
376 377 4.031201 CGTGCATTAAAAGCCAATTTACCG 59.969 41.667 0.00 0.00 0.00 4.02
377 378 4.201676 GCGTGCATTAAAAGCCAATTTACC 60.202 41.667 0.00 0.00 0.00 2.85
378 379 4.490160 CGCGTGCATTAAAAGCCAATTTAC 60.490 41.667 0.00 0.00 0.00 2.01
379 380 3.610242 CGCGTGCATTAAAAGCCAATTTA 59.390 39.130 0.00 0.00 0.00 1.40
380 381 2.411409 CGCGTGCATTAAAAGCCAATTT 59.589 40.909 0.00 0.00 0.00 1.82
381 382 1.991965 CGCGTGCATTAAAAGCCAATT 59.008 42.857 0.00 0.00 0.00 2.32
382 383 1.627879 CGCGTGCATTAAAAGCCAAT 58.372 45.000 0.00 0.00 0.00 3.16
383 384 0.387878 CCGCGTGCATTAAAAGCCAA 60.388 50.000 4.92 0.00 0.00 4.52
384 385 1.211449 CCGCGTGCATTAAAAGCCA 59.789 52.632 4.92 0.00 0.00 4.75
385 386 1.516169 CCCGCGTGCATTAAAAGCC 60.516 57.895 4.92 0.00 0.00 4.35
386 387 0.796870 GTCCCGCGTGCATTAAAAGC 60.797 55.000 4.92 0.00 0.00 3.51
387 388 0.520412 CGTCCCGCGTGCATTAAAAG 60.520 55.000 4.92 0.00 35.54 2.27
388 389 1.498166 CGTCCCGCGTGCATTAAAA 59.502 52.632 4.92 0.00 35.54 1.52
389 390 3.170127 CGTCCCGCGTGCATTAAA 58.830 55.556 4.92 0.00 35.54 1.52
399 400 2.050442 CAGGCAAAAACGTCCCGC 60.050 61.111 0.00 0.00 0.00 6.13
400 401 2.125202 GACCAGGCAAAAACGTCCCG 62.125 60.000 0.00 0.00 0.00 5.14
401 402 1.104577 TGACCAGGCAAAAACGTCCC 61.105 55.000 0.00 0.00 0.00 4.46
402 403 0.030235 GTGACCAGGCAAAAACGTCC 59.970 55.000 0.00 0.00 0.00 4.79
403 404 1.021968 AGTGACCAGGCAAAAACGTC 58.978 50.000 0.00 0.00 0.00 4.34
404 405 0.738389 CAGTGACCAGGCAAAAACGT 59.262 50.000 0.00 0.00 0.00 3.99
405 406 1.021202 TCAGTGACCAGGCAAAAACG 58.979 50.000 0.00 0.00 0.00 3.60
406 407 1.268539 CGTCAGTGACCAGGCAAAAAC 60.269 52.381 17.57 0.00 0.00 2.43
407 408 1.021202 CGTCAGTGACCAGGCAAAAA 58.979 50.000 17.57 0.00 0.00 1.94
408 409 1.444119 GCGTCAGTGACCAGGCAAAA 61.444 55.000 17.57 0.00 0.00 2.44
409 410 1.891919 GCGTCAGTGACCAGGCAAA 60.892 57.895 17.57 0.00 0.00 3.68
410 411 2.280797 GCGTCAGTGACCAGGCAA 60.281 61.111 17.57 0.00 0.00 4.52
411 412 3.233980 AGCGTCAGTGACCAGGCA 61.234 61.111 17.57 0.00 0.00 4.75
412 413 2.740055 CAGCGTCAGTGACCAGGC 60.740 66.667 17.57 14.62 0.00 4.85
413 414 2.047844 CCAGCGTCAGTGACCAGG 60.048 66.667 17.57 12.45 0.00 4.45
414 415 2.740055 GCCAGCGTCAGTGACCAG 60.740 66.667 17.57 5.77 0.00 4.00
415 416 4.314440 GGCCAGCGTCAGTGACCA 62.314 66.667 17.57 0.00 0.00 4.02
416 417 4.314440 TGGCCAGCGTCAGTGACC 62.314 66.667 17.57 10.25 0.00 4.02
417 418 2.740055 CTGGCCAGCGTCAGTGAC 60.740 66.667 22.33 13.56 0.00 3.67
418 419 4.007644 CCTGGCCAGCGTCAGTGA 62.008 66.667 28.39 0.00 0.00 3.41
421 422 4.790962 ATGCCTGGCCAGCGTCAG 62.791 66.667 28.39 14.41 0.00 3.51
423 424 3.680620 TACATGCCTGGCCAGCGTC 62.681 63.158 28.39 17.81 0.00 5.19
424 425 3.687321 CTACATGCCTGGCCAGCGT 62.687 63.158 28.39 21.19 0.00 5.07
425 426 2.898840 CTACATGCCTGGCCAGCG 60.899 66.667 28.39 20.72 0.00 5.18
426 427 3.214845 GCTACATGCCTGGCCAGC 61.215 66.667 28.39 22.00 35.15 4.85
427 428 2.898840 CGCTACATGCCTGGCCAG 60.899 66.667 26.87 26.87 38.78 4.85
435 436 1.143305 CACAGATAGGCGCTACATGC 58.857 55.000 7.64 0.00 38.57 4.06
436 437 2.608998 CCTCACAGATAGGCGCTACATG 60.609 54.545 7.64 2.87 0.00 3.21
437 438 1.615883 CCTCACAGATAGGCGCTACAT 59.384 52.381 7.64 0.00 0.00 2.29
438 439 1.032794 CCTCACAGATAGGCGCTACA 58.967 55.000 7.64 0.00 0.00 2.74
439 440 3.875838 CCTCACAGATAGGCGCTAC 57.124 57.895 7.64 0.00 0.00 3.58
445 446 0.108186 TGCAACGCCTCACAGATAGG 60.108 55.000 0.00 0.00 37.17 2.57
446 447 1.002366 GTGCAACGCCTCACAGATAG 58.998 55.000 0.00 0.00 33.63 2.08
447 448 0.320050 TGTGCAACGCCTCACAGATA 59.680 50.000 0.00 0.00 42.39 1.98
448 449 1.071299 TGTGCAACGCCTCACAGAT 59.929 52.632 0.00 0.00 42.39 2.90
449 450 2.503546 TGTGCAACGCCTCACAGA 59.496 55.556 0.00 0.00 42.39 3.41
451 452 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
452 453 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
453 454 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
454 455 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
455 456 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
456 457 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
457 458 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
458 459 1.257936 GTCACACTACACTGTGCAACG 59.742 52.381 7.90 0.00 42.39 4.10
459 460 1.257936 CGTCACACTACACTGTGCAAC 59.742 52.381 7.90 0.00 41.27 4.17
460 461 1.566404 CGTCACACTACACTGTGCAA 58.434 50.000 7.90 0.00 41.27 4.08
461 462 0.874175 GCGTCACACTACACTGTGCA 60.874 55.000 7.90 0.00 41.27 4.57
462 463 1.557443 GGCGTCACACTACACTGTGC 61.557 60.000 7.90 0.00 41.27 4.57
463 464 0.032130 AGGCGTCACACTACACTGTG 59.968 55.000 6.19 6.19 42.62 3.66
464 465 0.750850 AAGGCGTCACACTACACTGT 59.249 50.000 0.00 0.00 0.00 3.55
465 466 1.419374 GAAGGCGTCACACTACACTG 58.581 55.000 0.00 0.00 0.00 3.66
466 467 0.039437 CGAAGGCGTCACACTACACT 60.039 55.000 0.55 0.00 0.00 3.55
467 468 2.431539 CGAAGGCGTCACACTACAC 58.568 57.895 0.55 0.00 0.00 2.90
468 469 4.957266 CGAAGGCGTCACACTACA 57.043 55.556 0.55 0.00 0.00 2.74
490 491 2.618709 CTGATCTTTTTATGGGACGCCC 59.381 50.000 7.87 7.87 45.71 6.13
491 492 2.033424 GCTGATCTTTTTATGGGACGCC 59.967 50.000 0.00 0.00 0.00 5.68
492 493 2.033424 GGCTGATCTTTTTATGGGACGC 59.967 50.000 0.00 0.00 0.00 5.19
493 494 2.287915 CGGCTGATCTTTTTATGGGACG 59.712 50.000 0.00 0.00 0.00 4.79
494 495 2.618709 CCGGCTGATCTTTTTATGGGAC 59.381 50.000 0.00 0.00 0.00 4.46
495 496 2.422803 CCCGGCTGATCTTTTTATGGGA 60.423 50.000 0.00 0.00 36.17 4.37
496 497 1.956477 CCCGGCTGATCTTTTTATGGG 59.044 52.381 0.00 0.00 0.00 4.00
497 498 2.358898 CACCCGGCTGATCTTTTTATGG 59.641 50.000 0.00 0.00 0.00 2.74
498 499 3.278574 TCACCCGGCTGATCTTTTTATG 58.721 45.455 0.00 0.00 0.00 1.90
499 500 3.644966 TCACCCGGCTGATCTTTTTAT 57.355 42.857 0.00 0.00 0.00 1.40
500 501 3.426787 TTCACCCGGCTGATCTTTTTA 57.573 42.857 0.00 0.00 0.00 1.52
501 502 2.286365 TTCACCCGGCTGATCTTTTT 57.714 45.000 0.00 0.00 0.00 1.94
502 503 2.286365 TTTCACCCGGCTGATCTTTT 57.714 45.000 0.00 0.00 0.00 2.27
503 504 2.514458 ATTTCACCCGGCTGATCTTT 57.486 45.000 0.00 0.00 0.00 2.52
504 505 2.505819 ACTATTTCACCCGGCTGATCTT 59.494 45.455 0.00 0.00 0.00 2.40
505 506 2.119495 ACTATTTCACCCGGCTGATCT 58.881 47.619 0.00 0.00 0.00 2.75
506 507 2.622064 ACTATTTCACCCGGCTGATC 57.378 50.000 0.00 0.00 0.00 2.92
507 508 3.366052 AAACTATTTCACCCGGCTGAT 57.634 42.857 0.00 0.00 0.00 2.90
508 509 2.871096 AAACTATTTCACCCGGCTGA 57.129 45.000 0.00 0.00 0.00 4.26
509 510 3.181514 CGTAAAACTATTTCACCCGGCTG 60.182 47.826 0.00 0.00 0.00 4.85
510 511 3.004862 CGTAAAACTATTTCACCCGGCT 58.995 45.455 0.00 0.00 0.00 5.52
511 512 2.096335 CCGTAAAACTATTTCACCCGGC 59.904 50.000 0.00 0.00 0.00 6.13
512 513 2.679336 CCCGTAAAACTATTTCACCCGG 59.321 50.000 0.00 0.00 0.00 5.73
513 514 2.096335 GCCCGTAAAACTATTTCACCCG 59.904 50.000 0.00 0.00 0.00 5.28
514 515 3.083293 TGCCCGTAAAACTATTTCACCC 58.917 45.455 0.00 0.00 0.00 4.61
515 516 3.754850 ACTGCCCGTAAAACTATTTCACC 59.245 43.478 0.00 0.00 0.00 4.02
516 517 5.049267 TGAACTGCCCGTAAAACTATTTCAC 60.049 40.000 0.00 0.00 0.00 3.18
517 518 5.064558 TGAACTGCCCGTAAAACTATTTCA 58.935 37.500 0.00 0.00 0.00 2.69
518 519 5.616488 TGAACTGCCCGTAAAACTATTTC 57.384 39.130 0.00 0.00 0.00 2.17
519 520 6.433093 AGAATGAACTGCCCGTAAAACTATTT 59.567 34.615 0.00 0.00 0.00 1.40
520 521 5.944007 AGAATGAACTGCCCGTAAAACTATT 59.056 36.000 0.00 0.00 0.00 1.73
521 522 5.354234 CAGAATGAACTGCCCGTAAAACTAT 59.646 40.000 0.00 0.00 39.69 2.12
522 523 4.693566 CAGAATGAACTGCCCGTAAAACTA 59.306 41.667 0.00 0.00 39.69 2.24
523 524 3.502211 CAGAATGAACTGCCCGTAAAACT 59.498 43.478 0.00 0.00 39.69 2.66
524 525 3.252458 ACAGAATGAACTGCCCGTAAAAC 59.748 43.478 0.00 0.00 39.69 2.43
525 526 3.252215 CACAGAATGAACTGCCCGTAAAA 59.748 43.478 0.00 0.00 39.69 1.52
526 527 2.811431 CACAGAATGAACTGCCCGTAAA 59.189 45.455 0.00 0.00 39.69 2.01
527 528 2.037902 TCACAGAATGAACTGCCCGTAA 59.962 45.455 0.00 0.00 39.69 3.18
528 529 1.621317 TCACAGAATGAACTGCCCGTA 59.379 47.619 0.00 0.00 39.69 4.02
529 530 0.396435 TCACAGAATGAACTGCCCGT 59.604 50.000 0.00 0.00 39.69 5.28
530 531 1.742761 ATCACAGAATGAACTGCCCG 58.257 50.000 0.00 0.00 41.93 6.13
531 532 3.507233 TCAAATCACAGAATGAACTGCCC 59.493 43.478 0.00 0.00 41.93 5.36
532 533 4.771590 TCAAATCACAGAATGAACTGCC 57.228 40.909 0.00 0.00 41.93 4.85
533 534 6.033196 CGAAATCAAATCACAGAATGAACTGC 59.967 38.462 0.00 0.00 41.93 4.40
534 535 7.080099 ACGAAATCAAATCACAGAATGAACTG 58.920 34.615 0.00 0.00 41.93 3.16
535 536 7.206981 ACGAAATCAAATCACAGAATGAACT 57.793 32.000 0.00 0.00 41.93 3.01
536 537 6.524586 GGACGAAATCAAATCACAGAATGAAC 59.475 38.462 0.00 0.00 41.93 3.18
537 538 6.206438 TGGACGAAATCAAATCACAGAATGAA 59.794 34.615 0.00 0.00 41.93 2.57
538 539 5.704978 TGGACGAAATCAAATCACAGAATGA 59.295 36.000 0.00 0.00 43.13 2.57
539 540 5.941733 TGGACGAAATCAAATCACAGAATG 58.058 37.500 0.00 0.00 46.00 2.67
540 541 6.764308 ATGGACGAAATCAAATCACAGAAT 57.236 33.333 0.00 0.00 0.00 2.40
541 542 6.316140 CCTATGGACGAAATCAAATCACAGAA 59.684 38.462 0.00 0.00 0.00 3.02
542 543 5.817296 CCTATGGACGAAATCAAATCACAGA 59.183 40.000 0.00 0.00 0.00 3.41
543 544 5.586243 ACCTATGGACGAAATCAAATCACAG 59.414 40.000 0.00 0.00 0.00 3.66
544 545 5.496556 ACCTATGGACGAAATCAAATCACA 58.503 37.500 0.00 0.00 0.00 3.58
545 546 5.276868 CGACCTATGGACGAAATCAAATCAC 60.277 44.000 2.62 0.00 42.79 3.06
546 547 4.808895 CGACCTATGGACGAAATCAAATCA 59.191 41.667 2.62 0.00 42.79 2.57
547 548 5.047847 TCGACCTATGGACGAAATCAAATC 58.952 41.667 8.49 0.00 45.27 2.17
548 549 5.018539 TCGACCTATGGACGAAATCAAAT 57.981 39.130 8.49 0.00 45.27 2.32
549 550 4.459390 TCGACCTATGGACGAAATCAAA 57.541 40.909 8.49 0.00 45.27 2.69
556 557 3.193903 TGACAAATTCGACCTATGGACGA 59.806 43.478 7.03 7.03 46.34 4.20
557 558 3.517602 TGACAAATTCGACCTATGGACG 58.482 45.455 2.38 2.38 41.67 4.79
558 559 6.436843 AATTGACAAATTCGACCTATGGAC 57.563 37.500 0.00 0.00 29.70 4.02
559 560 7.461182 AAAATTGACAAATTCGACCTATGGA 57.539 32.000 0.00 0.00 34.84 3.41
560 561 7.700656 GGTAAAATTGACAAATTCGACCTATGG 59.299 37.037 10.66 0.00 37.41 2.74
561 562 7.700656 GGGTAAAATTGACAAATTCGACCTATG 59.299 37.037 14.89 0.00 38.88 2.23
562 563 7.147966 GGGGTAAAATTGACAAATTCGACCTAT 60.148 37.037 14.89 0.00 38.88 2.57
563 564 6.151480 GGGGTAAAATTGACAAATTCGACCTA 59.849 38.462 14.89 0.00 38.88 3.08
564 565 5.047590 GGGGTAAAATTGACAAATTCGACCT 60.048 40.000 14.89 0.00 38.88 3.85
565 566 5.165676 GGGGTAAAATTGACAAATTCGACC 58.834 41.667 9.88 9.88 38.52 4.79
566 567 4.854839 CGGGGTAAAATTGACAAATTCGAC 59.145 41.667 0.00 0.00 34.84 4.20
567 568 4.616373 GCGGGGTAAAATTGACAAATTCGA 60.616 41.667 0.00 0.00 34.84 3.71
568 569 3.610677 GCGGGGTAAAATTGACAAATTCG 59.389 43.478 0.00 0.00 34.84 3.34
569 570 3.610677 CGCGGGGTAAAATTGACAAATTC 59.389 43.478 0.00 0.00 34.84 2.17
570 571 3.256136 TCGCGGGGTAAAATTGACAAATT 59.744 39.130 6.13 0.00 37.61 1.82
571 572 2.820787 TCGCGGGGTAAAATTGACAAAT 59.179 40.909 6.13 0.00 0.00 2.32
572 573 2.226912 CTCGCGGGGTAAAATTGACAAA 59.773 45.455 6.13 0.00 0.00 2.83
573 574 1.807742 CTCGCGGGGTAAAATTGACAA 59.192 47.619 6.13 0.00 0.00 3.18
574 575 1.444836 CTCGCGGGGTAAAATTGACA 58.555 50.000 6.13 0.00 0.00 3.58
575 576 0.730840 CCTCGCGGGGTAAAATTGAC 59.269 55.000 19.58 0.00 0.00 3.18
576 577 1.027792 GCCTCGCGGGGTAAAATTGA 61.028 55.000 28.92 0.00 35.12 2.57
577 578 1.431845 GCCTCGCGGGGTAAAATTG 59.568 57.895 28.92 0.00 35.12 2.32
578 579 1.751544 GGCCTCGCGGGGTAAAATT 60.752 57.895 28.92 0.00 35.12 1.82
579 580 2.124445 GGCCTCGCGGGGTAAAAT 60.124 61.111 28.92 0.00 35.12 1.82
580 581 4.413565 GGGCCTCGCGGGGTAAAA 62.414 66.667 28.92 0.00 35.12 1.52
654 656 0.592754 GCGGTATCTCACTCGCACTC 60.593 60.000 0.00 0.00 42.66 3.51
659 661 1.939785 GCACGCGGTATCTCACTCG 60.940 63.158 12.47 0.00 0.00 4.18
673 675 2.310233 CCACAAGGACTGACGCACG 61.310 63.158 0.00 0.00 36.89 5.34
674 676 1.961277 CCCACAAGGACTGACGCAC 60.961 63.158 0.00 0.00 38.24 5.34
675 677 2.425592 CCCACAAGGACTGACGCA 59.574 61.111 0.00 0.00 38.24 5.24
676 678 3.050275 GCCCACAAGGACTGACGC 61.050 66.667 0.00 0.00 38.24 5.19
681 683 4.974438 TCCCGGCCCACAAGGACT 62.974 66.667 0.00 0.00 44.54 3.85
706 708 1.970114 CCGCATGGATGGCATCTCC 60.970 63.158 25.48 13.57 37.49 3.71
865 870 4.329545 TCTCACAAGTGGCGGGGC 62.330 66.667 0.00 0.00 0.00 5.80
867 872 1.374758 GAGTCTCACAAGTGGCGGG 60.375 63.158 0.00 0.00 0.00 6.13
870 875 1.003233 GGGGAGTCTCACAAGTGGC 60.003 63.158 4.08 0.00 0.00 5.01
966 993 1.208293 GGCAAGTACAGAGAGGAAGGG 59.792 57.143 0.00 0.00 0.00 3.95
969 996 0.895530 CCGGCAAGTACAGAGAGGAA 59.104 55.000 0.00 0.00 0.00 3.36
975 1002 2.345991 GGCACCGGCAAGTACAGA 59.654 61.111 0.00 0.00 43.71 3.41
1152 1199 3.220999 CTCTTGGTGGTCGCCGTCA 62.221 63.158 0.00 0.00 0.00 4.35
1170 1226 2.980233 ACTTGTTGGAGCGGCTGC 60.980 61.111 15.13 15.13 43.24 5.25
1171 1227 2.949106 CACTTGTTGGAGCGGCTG 59.051 61.111 7.50 0.00 0.00 4.85
1182 1238 4.254709 TGCTGCGGCTCCACTTGT 62.255 61.111 20.27 0.00 39.59 3.16
1215 1271 1.432251 CTGGTCGCGGTAGTACAGG 59.568 63.158 6.13 0.00 0.00 4.00
1594 1665 0.792640 TCTACAAGGTCGTCGTCGTC 59.207 55.000 1.33 0.00 38.33 4.20
1608 1679 0.887836 ACTCGGTGTCGTGCTCTACA 60.888 55.000 0.00 0.00 37.69 2.74
1638 1721 2.206750 GGTGTCGTGAAGCTGTTGTAA 58.793 47.619 0.00 0.00 0.00 2.41
1696 1779 1.748122 GAGGGACGTACTCCTCGCA 60.748 63.158 13.87 0.00 39.95 5.10
1710 1793 4.256180 GCCGGCCTGTATGGAGGG 62.256 72.222 18.11 0.00 38.35 4.30
1927 2010 2.035312 CCCCTGCTGCTTCTTGCT 59.965 61.111 0.00 0.00 43.37 3.91
2026 2115 2.765807 CTCCACGGCCTCCTCCAT 60.766 66.667 0.00 0.00 0.00 3.41
2277 2377 9.204570 CTTAATTAGCGCCACAATATTACTAGT 57.795 33.333 2.29 0.00 0.00 2.57
2322 2422 3.196469 TGCCATGTTCAACAGACCAAAAA 59.804 39.130 0.00 0.00 0.00 1.94
2328 2428 3.766151 CATGATGCCATGTTCAACAGAC 58.234 45.455 0.00 0.00 43.90 3.51
2411 2535 1.647084 GAGACGCACAAACCACCAC 59.353 57.895 0.00 0.00 0.00 4.16
2509 2660 4.382470 CCTGACAACCACTGAGATCCTAAG 60.382 50.000 0.00 0.00 0.00 2.18
2553 3010 2.507102 ACATGGAAGCGTCGCTCG 60.507 61.111 21.98 9.36 38.25 5.03
2554 3011 1.446099 TGACATGGAAGCGTCGCTC 60.446 57.895 21.98 13.60 38.25 5.03
2580 3038 2.555782 CCAACCACATGCGACGTG 59.444 61.111 0.00 0.00 0.00 4.49
2588 3046 1.567357 GGGGTAAATGCCAACCACAT 58.433 50.000 0.00 0.00 39.13 3.21
2600 3058 0.686224 ATCGTCGTGTTGGGGGTAAA 59.314 50.000 0.00 0.00 0.00 2.01
2602 3060 0.899253 TGATCGTCGTGTTGGGGGTA 60.899 55.000 0.00 0.00 0.00 3.69
2603 3061 2.211410 TGATCGTCGTGTTGGGGGT 61.211 57.895 0.00 0.00 0.00 4.95
2604 3062 1.740296 GTGATCGTCGTGTTGGGGG 60.740 63.158 0.00 0.00 0.00 5.40
2605 3063 2.092291 CGTGATCGTCGTGTTGGGG 61.092 63.158 0.00 0.00 0.00 4.96
2606 3064 1.081041 TCGTGATCGTCGTGTTGGG 60.081 57.895 9.31 0.00 38.33 4.12
2609 3067 2.078914 GCGTCGTGATCGTCGTGTT 61.079 57.895 9.31 0.00 46.29 3.32
2611 3069 3.585574 CGCGTCGTGATCGTCGTG 61.586 66.667 0.00 7.53 46.88 4.35
2614 3072 3.598562 CAGCGCGTCGTGATCGTC 61.599 66.667 10.58 0.00 38.33 4.20
2655 3974 3.110178 CGAGAAACGGCGACCACC 61.110 66.667 16.62 0.00 38.46 4.61
2761 4080 3.151554 GGTGACGGTTTTTCCCATAAGT 58.848 45.455 0.00 0.00 0.00 2.24
2769 4088 1.004292 CGTGACAGGTGACGGTTTTTC 60.004 52.381 3.46 0.00 39.51 2.29
2832 4156 3.062639 GGAGAACGCAACACATCTACATG 59.937 47.826 0.00 0.00 35.92 3.21
2965 4355 2.224606 CGCAGGAATGTTGGATATGCT 58.775 47.619 0.00 0.00 0.00 3.79
2966 4356 1.335324 GCGCAGGAATGTTGGATATGC 60.335 52.381 0.30 0.00 0.00 3.14
2967 4357 1.267806 GGCGCAGGAATGTTGGATATG 59.732 52.381 10.83 0.00 0.00 1.78
2968 4358 1.143684 AGGCGCAGGAATGTTGGATAT 59.856 47.619 10.83 0.00 0.00 1.63
2969 4359 0.546122 AGGCGCAGGAATGTTGGATA 59.454 50.000 10.83 0.00 0.00 2.59
2970 4360 0.546122 TAGGCGCAGGAATGTTGGAT 59.454 50.000 10.83 0.00 0.00 3.41
2971 4361 0.546122 ATAGGCGCAGGAATGTTGGA 59.454 50.000 10.83 0.00 0.00 3.53
2981 4371 2.279517 GGTCGTGGATAGGCGCAG 60.280 66.667 10.83 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.