Multiple sequence alignment - TraesCS1D01G366000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G366000 chr1D 100.000 2549 0 0 1 2549 446416237 446418785 0.000000e+00 4708
1 TraesCS1D01G366000 chr1D 85.618 2218 200 49 349 2547 205116572 205114455 0.000000e+00 2218
2 TraesCS1D01G366000 chr1D 98.537 205 3 0 1 205 26443206 26443410 1.860000e-96 363
3 TraesCS1D01G366000 chr1D 98.049 205 4 0 1 205 259196244 259196040 8.670000e-95 357
4 TraesCS1D01G366000 chr1D 98.049 205 4 0 1 205 259203264 259203060 8.670000e-95 357
5 TraesCS1D01G366000 chr1D 98.049 205 4 0 1 205 393524950 393524746 8.670000e-95 357
6 TraesCS1D01G366000 chr5D 94.853 2137 70 17 349 2473 445784623 445782515 0.000000e+00 3301
7 TraesCS1D01G366000 chr5D 90.385 156 10 4 264 417 108146608 108146456 1.550000e-47 200
8 TraesCS1D01G366000 chr5D 88.820 161 13 4 259 417 108135499 108135656 2.590000e-45 193
9 TraesCS1D01G366000 chr7D 93.405 2244 76 20 349 2549 460797151 460799365 0.000000e+00 3258
10 TraesCS1D01G366000 chr7D 96.353 1755 53 10 799 2549 572999436 573001183 0.000000e+00 2876
11 TraesCS1D01G366000 chr7D 96.059 1751 58 5 800 2549 72149839 72151579 0.000000e+00 2841
12 TraesCS1D01G366000 chr7D 90.132 152 11 4 262 411 528565652 528565503 7.200000e-46 195
13 TraesCS1D01G366000 chr7D 88.961 154 11 5 262 412 610717115 610717265 4.330000e-43 185
14 TraesCS1D01G366000 chr2B 93.309 2212 121 20 349 2549 215844449 215846644 0.000000e+00 3240
15 TraesCS1D01G366000 chr6A 91.998 2237 95 37 349 2549 7014101 7016289 0.000000e+00 3062
16 TraesCS1D01G366000 chr6B 95.954 1755 67 4 798 2549 281225655 281223902 0.000000e+00 2844
17 TraesCS1D01G366000 chr4B 92.168 2043 103 26 349 2378 396487786 396489784 0.000000e+00 2833
18 TraesCS1D01G366000 chr1B 95.915 1738 69 2 813 2549 504250205 504248469 0.000000e+00 2815
19 TraesCS1D01G366000 chr1A 95.403 1762 77 4 789 2549 311785151 311783393 0.000000e+00 2802
20 TraesCS1D01G366000 chr4D 95.563 1758 60 10 799 2549 450517963 450519709 0.000000e+00 2798
21 TraesCS1D01G366000 chr4D 98.537 205 3 0 1 205 494388902 494389106 1.860000e-96 363
22 TraesCS1D01G366000 chr4D 98.049 205 4 0 1 205 32195727 32195931 8.670000e-95 357
23 TraesCS1D01G366000 chr4D 98.049 205 4 0 1 205 43134819 43135023 8.670000e-95 357
24 TraesCS1D01G366000 chr4D 90.385 156 10 4 264 417 470192204 470192356 1.550000e-47 200
25 TraesCS1D01G366000 chr4D 89.506 162 11 5 258 417 470199543 470199386 1.550000e-47 200
26 TraesCS1D01G366000 chr7B 95.000 1780 82 7 774 2549 40153626 40151850 0.000000e+00 2787
27 TraesCS1D01G366000 chr2D 95.006 1762 75 9 798 2549 476787006 476788764 0.000000e+00 2754
28 TraesCS1D01G366000 chr2D 98.537 205 3 0 1 205 275861667 275861463 1.860000e-96 363
29 TraesCS1D01G366000 chrUn 91.769 1543 56 18 349 1848 10396337 10397851 0.000000e+00 2080
30 TraesCS1D01G366000 chr5B 92.462 1393 73 14 349 1730 701834045 701832674 0.000000e+00 1962
31 TraesCS1D01G366000 chr3D 92.723 481 19 8 349 822 310403414 310403885 0.000000e+00 680
32 TraesCS1D01G366000 chr3D 89.103 156 12 4 264 417 446920236 446920388 3.350000e-44 189
33 TraesCS1D01G366000 chr6D 90.000 510 33 12 349 849 377197021 377197521 0.000000e+00 643
34 TraesCS1D01G366000 chr6D 98.537 205 3 0 1 205 316973409 316973205 1.860000e-96 363
35 TraesCS1D01G366000 chr6D 89.820 167 12 4 253 417 62138183 62138346 2.570000e-50 209
36 TraesCS1D01G366000 chr6D 88.623 167 11 6 254 417 62145520 62145359 2.000000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G366000 chr1D 446416237 446418785 2548 False 4708 4708 100.000 1 2549 1 chr1D.!!$F2 2548
1 TraesCS1D01G366000 chr1D 205114455 205116572 2117 True 2218 2218 85.618 349 2547 1 chr1D.!!$R1 2198
2 TraesCS1D01G366000 chr5D 445782515 445784623 2108 True 3301 3301 94.853 349 2473 1 chr5D.!!$R2 2124
3 TraesCS1D01G366000 chr7D 460797151 460799365 2214 False 3258 3258 93.405 349 2549 1 chr7D.!!$F2 2200
4 TraesCS1D01G366000 chr7D 572999436 573001183 1747 False 2876 2876 96.353 799 2549 1 chr7D.!!$F3 1750
5 TraesCS1D01G366000 chr7D 72149839 72151579 1740 False 2841 2841 96.059 800 2549 1 chr7D.!!$F1 1749
6 TraesCS1D01G366000 chr2B 215844449 215846644 2195 False 3240 3240 93.309 349 2549 1 chr2B.!!$F1 2200
7 TraesCS1D01G366000 chr6A 7014101 7016289 2188 False 3062 3062 91.998 349 2549 1 chr6A.!!$F1 2200
8 TraesCS1D01G366000 chr6B 281223902 281225655 1753 True 2844 2844 95.954 798 2549 1 chr6B.!!$R1 1751
9 TraesCS1D01G366000 chr4B 396487786 396489784 1998 False 2833 2833 92.168 349 2378 1 chr4B.!!$F1 2029
10 TraesCS1D01G366000 chr1B 504248469 504250205 1736 True 2815 2815 95.915 813 2549 1 chr1B.!!$R1 1736
11 TraesCS1D01G366000 chr1A 311783393 311785151 1758 True 2802 2802 95.403 789 2549 1 chr1A.!!$R1 1760
12 TraesCS1D01G366000 chr4D 450517963 450519709 1746 False 2798 2798 95.563 799 2549 1 chr4D.!!$F3 1750
13 TraesCS1D01G366000 chr7B 40151850 40153626 1776 True 2787 2787 95.000 774 2549 1 chr7B.!!$R1 1775
14 TraesCS1D01G366000 chr2D 476787006 476788764 1758 False 2754 2754 95.006 798 2549 1 chr2D.!!$F1 1751
15 TraesCS1D01G366000 chrUn 10396337 10397851 1514 False 2080 2080 91.769 349 1848 1 chrUn.!!$F1 1499
16 TraesCS1D01G366000 chr5B 701832674 701834045 1371 True 1962 1962 92.462 349 1730 1 chr5B.!!$R1 1381
17 TraesCS1D01G366000 chr6D 377197021 377197521 500 False 643 643 90.000 349 849 1 chr6D.!!$F2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.034089 AAAAGAGGGGATGCCTTCCG 60.034 55.0 11.99 0.0 46.52 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1854 0.664166 GTCTTGTTGCCGCACAATGG 60.664 55.0 0.0 0.0 41.27 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.633830 AAGTTACCGATAGACGAAGACAA 57.366 39.130 0.00 0.00 45.77 3.18
23 24 5.633830 AGTTACCGATAGACGAAGACAAA 57.366 39.130 0.00 0.00 45.77 2.83
24 25 6.017400 AGTTACCGATAGACGAAGACAAAA 57.983 37.500 0.00 0.00 45.77 2.44
25 26 6.091437 AGTTACCGATAGACGAAGACAAAAG 58.909 40.000 0.00 0.00 45.77 2.27
26 27 4.778534 ACCGATAGACGAAGACAAAAGA 57.221 40.909 0.00 0.00 45.77 2.52
27 28 4.734917 ACCGATAGACGAAGACAAAAGAG 58.265 43.478 0.00 0.00 45.77 2.85
28 29 4.106197 CCGATAGACGAAGACAAAAGAGG 58.894 47.826 0.00 0.00 45.77 3.69
29 30 4.106197 CGATAGACGAAGACAAAAGAGGG 58.894 47.826 0.00 0.00 45.77 4.30
30 31 2.841442 AGACGAAGACAAAAGAGGGG 57.159 50.000 0.00 0.00 0.00 4.79
31 32 2.326428 AGACGAAGACAAAAGAGGGGA 58.674 47.619 0.00 0.00 0.00 4.81
32 33 2.907042 AGACGAAGACAAAAGAGGGGAT 59.093 45.455 0.00 0.00 0.00 3.85
33 34 3.003480 GACGAAGACAAAAGAGGGGATG 58.997 50.000 0.00 0.00 0.00 3.51
34 35 1.740025 CGAAGACAAAAGAGGGGATGC 59.260 52.381 0.00 0.00 0.00 3.91
35 36 2.095461 GAAGACAAAAGAGGGGATGCC 58.905 52.381 0.00 0.00 0.00 4.40
36 37 1.376649 AGACAAAAGAGGGGATGCCT 58.623 50.000 2.19 0.00 0.00 4.75
37 38 1.713078 AGACAAAAGAGGGGATGCCTT 59.287 47.619 2.19 0.00 0.00 4.35
38 39 2.095461 GACAAAAGAGGGGATGCCTTC 58.905 52.381 7.35 7.35 0.00 3.46
39 40 1.272704 ACAAAAGAGGGGATGCCTTCC 60.273 52.381 11.99 0.00 44.62 3.46
40 41 0.034089 AAAAGAGGGGATGCCTTCCG 60.034 55.000 11.99 0.00 46.52 4.30
41 42 1.926426 AAAGAGGGGATGCCTTCCGG 61.926 60.000 11.99 0.00 46.52 5.14
42 43 3.878667 GAGGGGATGCCTTCCGGG 61.879 72.222 3.75 0.00 46.52 5.73
59 60 4.587056 GGCATCCCCAAGCTTAGG 57.413 61.111 3.60 3.60 0.00 2.69
60 61 1.829970 GGCATCCCCAAGCTTAGGC 60.830 63.158 5.25 0.00 39.06 3.93
72 73 2.724977 GCTTAGGCTTTTGGTTGTCC 57.275 50.000 0.00 0.00 35.22 4.02
73 74 2.239400 GCTTAGGCTTTTGGTTGTCCT 58.761 47.619 0.00 0.00 35.22 3.85
74 75 2.628178 GCTTAGGCTTTTGGTTGTCCTT 59.372 45.455 0.00 0.00 35.22 3.36
75 76 3.552890 GCTTAGGCTTTTGGTTGTCCTTG 60.553 47.826 0.00 0.00 35.22 3.61
76 77 2.452600 AGGCTTTTGGTTGTCCTTGA 57.547 45.000 0.00 0.00 34.23 3.02
77 78 2.745968 AGGCTTTTGGTTGTCCTTGAA 58.254 42.857 0.00 0.00 34.23 2.69
78 79 3.308401 AGGCTTTTGGTTGTCCTTGAAT 58.692 40.909 0.00 0.00 34.23 2.57
79 80 3.711190 AGGCTTTTGGTTGTCCTTGAATT 59.289 39.130 0.00 0.00 34.23 2.17
80 81 4.164030 AGGCTTTTGGTTGTCCTTGAATTT 59.836 37.500 0.00 0.00 34.23 1.82
81 82 4.881273 GGCTTTTGGTTGTCCTTGAATTTT 59.119 37.500 0.00 0.00 34.23 1.82
82 83 6.052360 GGCTTTTGGTTGTCCTTGAATTTTA 58.948 36.000 0.00 0.00 34.23 1.52
83 84 6.018262 GGCTTTTGGTTGTCCTTGAATTTTAC 60.018 38.462 0.00 0.00 34.23 2.01
84 85 6.018262 GCTTTTGGTTGTCCTTGAATTTTACC 60.018 38.462 0.00 0.00 34.23 2.85
85 86 6.800072 TTTGGTTGTCCTTGAATTTTACCT 57.200 33.333 0.00 0.00 34.23 3.08
86 87 6.800072 TTGGTTGTCCTTGAATTTTACCTT 57.200 33.333 0.00 0.00 34.23 3.50
87 88 6.155475 TGGTTGTCCTTGAATTTTACCTTG 57.845 37.500 0.00 0.00 34.23 3.61
88 89 5.069781 TGGTTGTCCTTGAATTTTACCTTGG 59.930 40.000 0.00 0.00 34.23 3.61
89 90 5.510690 GGTTGTCCTTGAATTTTACCTTGGG 60.511 44.000 0.00 0.00 0.00 4.12
90 91 4.156477 TGTCCTTGAATTTTACCTTGGGG 58.844 43.478 0.00 0.00 38.88 4.96
92 93 4.021456 GTCCTTGAATTTTACCTTGGGGTG 60.021 45.833 0.00 0.00 46.75 4.61
93 94 3.306710 CCTTGAATTTTACCTTGGGGTGC 60.307 47.826 0.00 0.00 46.75 5.01
94 95 2.252714 TGAATTTTACCTTGGGGTGCC 58.747 47.619 0.00 0.00 46.75 5.01
95 96 2.158234 TGAATTTTACCTTGGGGTGCCT 60.158 45.455 0.00 0.00 46.75 4.75
96 97 2.713828 ATTTTACCTTGGGGTGCCTT 57.286 45.000 0.00 0.00 46.75 4.35
97 98 1.710816 TTTTACCTTGGGGTGCCTTG 58.289 50.000 0.00 0.00 46.75 3.61
98 99 0.178947 TTTACCTTGGGGTGCCTTGG 60.179 55.000 0.00 0.00 46.75 3.61
99 100 2.087857 TTACCTTGGGGTGCCTTGGG 62.088 60.000 0.00 0.00 46.75 4.12
115 116 4.587056 GGCATCCCCAAGCTTAGG 57.413 61.111 3.60 3.60 0.00 2.69
116 117 1.829970 GGCATCCCCAAGCTTAGGC 60.830 63.158 5.25 0.00 39.06 3.93
132 133 4.865865 GCTCTTGCCGCTCCTTAT 57.134 55.556 0.00 0.00 0.00 1.73
133 134 3.086733 GCTCTTGCCGCTCCTTATT 57.913 52.632 0.00 0.00 0.00 1.40
134 135 0.940833 GCTCTTGCCGCTCCTTATTC 59.059 55.000 0.00 0.00 0.00 1.75
135 136 1.587547 CTCTTGCCGCTCCTTATTCC 58.412 55.000 0.00 0.00 0.00 3.01
136 137 0.908910 TCTTGCCGCTCCTTATTCCA 59.091 50.000 0.00 0.00 0.00 3.53
137 138 1.280710 TCTTGCCGCTCCTTATTCCAA 59.719 47.619 0.00 0.00 0.00 3.53
138 139 2.091541 CTTGCCGCTCCTTATTCCAAA 58.908 47.619 0.00 0.00 0.00 3.28
139 140 2.208132 TGCCGCTCCTTATTCCAAAA 57.792 45.000 0.00 0.00 0.00 2.44
140 141 2.733956 TGCCGCTCCTTATTCCAAAAT 58.266 42.857 0.00 0.00 0.00 1.82
141 142 2.687935 TGCCGCTCCTTATTCCAAAATC 59.312 45.455 0.00 0.00 0.00 2.17
142 143 2.034685 GCCGCTCCTTATTCCAAAATCC 59.965 50.000 0.00 0.00 0.00 3.01
143 144 3.287222 CCGCTCCTTATTCCAAAATCCA 58.713 45.455 0.00 0.00 0.00 3.41
144 145 3.891366 CCGCTCCTTATTCCAAAATCCAT 59.109 43.478 0.00 0.00 0.00 3.41
145 146 4.022849 CCGCTCCTTATTCCAAAATCCATC 60.023 45.833 0.00 0.00 0.00 3.51
146 147 4.580167 CGCTCCTTATTCCAAAATCCATCA 59.420 41.667 0.00 0.00 0.00 3.07
147 148 5.067674 CGCTCCTTATTCCAAAATCCATCAA 59.932 40.000 0.00 0.00 0.00 2.57
148 149 6.405731 CGCTCCTTATTCCAAAATCCATCAAA 60.406 38.462 0.00 0.00 0.00 2.69
149 150 7.503549 GCTCCTTATTCCAAAATCCATCAAAT 58.496 34.615 0.00 0.00 0.00 2.32
150 151 7.654923 GCTCCTTATTCCAAAATCCATCAAATC 59.345 37.037 0.00 0.00 0.00 2.17
151 152 8.843308 TCCTTATTCCAAAATCCATCAAATCT 57.157 30.769 0.00 0.00 0.00 2.40
152 153 9.270707 TCCTTATTCCAAAATCCATCAAATCTT 57.729 29.630 0.00 0.00 0.00 2.40
153 154 9.895138 CCTTATTCCAAAATCCATCAAATCTTT 57.105 29.630 0.00 0.00 0.00 2.52
157 158 7.181569 TCCAAAATCCATCAAATCTTTACCC 57.818 36.000 0.00 0.00 0.00 3.69
158 159 6.728164 TCCAAAATCCATCAAATCTTTACCCA 59.272 34.615 0.00 0.00 0.00 4.51
159 160 7.236432 TCCAAAATCCATCAAATCTTTACCCAA 59.764 33.333 0.00 0.00 0.00 4.12
160 161 7.882271 CCAAAATCCATCAAATCTTTACCCAAA 59.118 33.333 0.00 0.00 0.00 3.28
161 162 9.282569 CAAAATCCATCAAATCTTTACCCAAAA 57.717 29.630 0.00 0.00 0.00 2.44
162 163 9.859152 AAAATCCATCAAATCTTTACCCAAAAA 57.141 25.926 0.00 0.00 0.00 1.94
163 164 8.846943 AATCCATCAAATCTTTACCCAAAAAC 57.153 30.769 0.00 0.00 0.00 2.43
164 165 7.610580 TCCATCAAATCTTTACCCAAAAACT 57.389 32.000 0.00 0.00 0.00 2.66
165 166 8.028652 TCCATCAAATCTTTACCCAAAAACTT 57.971 30.769 0.00 0.00 0.00 2.66
166 167 7.930865 TCCATCAAATCTTTACCCAAAAACTTG 59.069 33.333 0.00 0.00 0.00 3.16
167 168 7.930865 CCATCAAATCTTTACCCAAAAACTTGA 59.069 33.333 0.00 0.00 0.00 3.02
168 169 9.323985 CATCAAATCTTTACCCAAAAACTTGAA 57.676 29.630 0.00 0.00 29.70 2.69
169 170 9.898152 ATCAAATCTTTACCCAAAAACTTGAAA 57.102 25.926 0.00 0.00 29.70 2.69
170 171 9.726438 TCAAATCTTTACCCAAAAACTTGAAAA 57.274 25.926 0.00 0.00 0.00 2.29
171 172 9.767684 CAAATCTTTACCCAAAAACTTGAAAAC 57.232 29.630 0.00 0.00 0.00 2.43
172 173 9.733556 AAATCTTTACCCAAAAACTTGAAAACT 57.266 25.926 0.00 0.00 0.00 2.66
173 174 9.733556 AATCTTTACCCAAAAACTTGAAAACTT 57.266 25.926 0.00 0.00 0.00 2.66
174 175 8.766000 TCTTTACCCAAAAACTTGAAAACTTC 57.234 30.769 0.00 0.00 0.00 3.01
175 176 8.368668 TCTTTACCCAAAAACTTGAAAACTTCA 58.631 29.630 0.00 0.00 38.04 3.02
176 177 7.892778 TTACCCAAAAACTTGAAAACTTCAC 57.107 32.000 0.00 0.00 39.87 3.18
177 178 5.859495 ACCCAAAAACTTGAAAACTTCACA 58.141 33.333 0.00 0.00 39.87 3.58
178 179 6.292150 ACCCAAAAACTTGAAAACTTCACAA 58.708 32.000 0.00 0.00 39.87 3.33
179 180 6.203915 ACCCAAAAACTTGAAAACTTCACAAC 59.796 34.615 0.00 0.00 39.87 3.32
180 181 6.203723 CCCAAAAACTTGAAAACTTCACAACA 59.796 34.615 0.00 0.00 39.87 3.33
181 182 7.068955 CCAAAAACTTGAAAACTTCACAACAC 58.931 34.615 0.00 0.00 39.87 3.32
182 183 7.254590 CCAAAAACTTGAAAACTTCACAACACA 60.255 33.333 0.00 0.00 39.87 3.72
183 184 7.778470 AAAACTTGAAAACTTCACAACACAA 57.222 28.000 0.00 0.00 39.87 3.33
184 185 7.778470 AAACTTGAAAACTTCACAACACAAA 57.222 28.000 0.00 0.00 39.87 2.83
185 186 7.778470 AACTTGAAAACTTCACAACACAAAA 57.222 28.000 0.00 0.00 39.87 2.44
186 187 7.172654 ACTTGAAAACTTCACAACACAAAAC 57.827 32.000 0.00 0.00 39.87 2.43
187 188 6.983890 ACTTGAAAACTTCACAACACAAAACT 59.016 30.769 0.00 0.00 39.87 2.66
188 189 7.169140 ACTTGAAAACTTCACAACACAAAACTC 59.831 33.333 0.00 0.00 39.87 3.01
189 190 6.507900 TGAAAACTTCACAACACAAAACTCA 58.492 32.000 0.00 0.00 34.08 3.41
190 191 6.980978 TGAAAACTTCACAACACAAAACTCAA 59.019 30.769 0.00 0.00 34.08 3.02
191 192 7.655328 TGAAAACTTCACAACACAAAACTCAAT 59.345 29.630 0.00 0.00 34.08 2.57
192 193 9.134734 GAAAACTTCACAACACAAAACTCAATA 57.865 29.630 0.00 0.00 0.00 1.90
193 194 8.687824 AAACTTCACAACACAAAACTCAATAG 57.312 30.769 0.00 0.00 0.00 1.73
194 195 7.624360 ACTTCACAACACAAAACTCAATAGA 57.376 32.000 0.00 0.00 0.00 1.98
195 196 8.050778 ACTTCACAACACAAAACTCAATAGAA 57.949 30.769 0.00 0.00 0.00 2.10
196 197 8.519526 ACTTCACAACACAAAACTCAATAGAAA 58.480 29.630 0.00 0.00 0.00 2.52
197 198 9.352784 CTTCACAACACAAAACTCAATAGAAAA 57.647 29.630 0.00 0.00 0.00 2.29
198 199 9.868277 TTCACAACACAAAACTCAATAGAAAAT 57.132 25.926 0.00 0.00 0.00 1.82
199 200 9.515020 TCACAACACAAAACTCAATAGAAAATC 57.485 29.630 0.00 0.00 0.00 2.17
200 201 9.520204 CACAACACAAAACTCAATAGAAAATCT 57.480 29.630 0.00 0.00 0.00 2.40
201 202 9.736023 ACAACACAAAACTCAATAGAAAATCTC 57.264 29.630 0.00 0.00 0.00 2.75
202 203 9.734620 CAACACAAAACTCAATAGAAAATCTCA 57.265 29.630 0.00 0.00 0.00 3.27
204 205 9.903682 ACACAAAACTCAATAGAAAATCTCATG 57.096 29.630 0.00 0.00 0.00 3.07
205 206 9.903682 CACAAAACTCAATAGAAAATCTCATGT 57.096 29.630 0.00 0.00 0.00 3.21
207 208 9.270576 CAAAACTCAATAGAAAATCTCATGTCG 57.729 33.333 0.00 0.00 0.00 4.35
208 209 7.545362 AACTCAATAGAAAATCTCATGTCGG 57.455 36.000 0.00 0.00 0.00 4.79
209 210 6.051717 ACTCAATAGAAAATCTCATGTCGGG 58.948 40.000 0.00 0.00 0.00 5.14
210 211 6.127054 ACTCAATAGAAAATCTCATGTCGGGA 60.127 38.462 0.00 0.00 0.00 5.14
211 212 6.049149 TCAATAGAAAATCTCATGTCGGGAC 58.951 40.000 0.00 0.00 0.00 4.46
230 231 4.643387 GGTGGCGCTTGGTCAGGT 62.643 66.667 7.64 0.00 0.00 4.00
231 232 3.357079 GTGGCGCTTGGTCAGGTG 61.357 66.667 7.64 0.00 0.00 4.00
234 235 3.426568 GCGCTTGGTCAGGTGCTC 61.427 66.667 10.66 0.00 40.24 4.26
235 236 3.114616 CGCTTGGTCAGGTGCTCG 61.115 66.667 0.00 0.00 0.00 5.03
236 237 2.743928 GCTTGGTCAGGTGCTCGG 60.744 66.667 0.00 0.00 0.00 4.63
237 238 2.743928 CTTGGTCAGGTGCTCGGC 60.744 66.667 0.00 0.00 0.00 5.54
238 239 4.680237 TTGGTCAGGTGCTCGGCG 62.680 66.667 0.00 0.00 0.00 6.46
253 254 3.869272 GCGGCTGCTCCAACGATG 61.869 66.667 11.21 0.00 38.39 3.84
254 255 2.434884 CGGCTGCTCCAACGATGT 60.435 61.111 0.00 0.00 34.01 3.06
255 256 2.456119 CGGCTGCTCCAACGATGTC 61.456 63.158 0.00 0.00 34.01 3.06
256 257 1.078848 GGCTGCTCCAACGATGTCT 60.079 57.895 0.00 0.00 34.01 3.41
257 258 0.175760 GGCTGCTCCAACGATGTCTA 59.824 55.000 0.00 0.00 34.01 2.59
258 259 1.565305 GCTGCTCCAACGATGTCTAG 58.435 55.000 0.00 0.00 0.00 2.43
259 260 1.804372 GCTGCTCCAACGATGTCTAGG 60.804 57.143 0.00 0.00 0.00 3.02
260 261 1.751351 CTGCTCCAACGATGTCTAGGA 59.249 52.381 0.00 0.00 0.00 2.94
261 262 1.751351 TGCTCCAACGATGTCTAGGAG 59.249 52.381 0.00 0.00 46.71 3.69
262 263 1.067821 GCTCCAACGATGTCTAGGAGG 59.932 57.143 8.67 0.00 44.68 4.30
263 264 1.683917 CTCCAACGATGTCTAGGAGGG 59.316 57.143 0.00 0.00 41.65 4.30
264 265 0.753262 CCAACGATGTCTAGGAGGGG 59.247 60.000 0.00 0.00 0.00 4.79
265 266 0.105039 CAACGATGTCTAGGAGGGGC 59.895 60.000 0.00 0.00 0.00 5.80
266 267 0.325296 AACGATGTCTAGGAGGGGCA 60.325 55.000 0.00 0.00 0.00 5.36
267 268 0.325296 ACGATGTCTAGGAGGGGCAA 60.325 55.000 0.00 0.00 0.00 4.52
268 269 0.830648 CGATGTCTAGGAGGGGCAAA 59.169 55.000 0.00 0.00 0.00 3.68
269 270 1.209504 CGATGTCTAGGAGGGGCAAAA 59.790 52.381 0.00 0.00 0.00 2.44
270 271 2.158755 CGATGTCTAGGAGGGGCAAAAT 60.159 50.000 0.00 0.00 0.00 1.82
271 272 3.685550 CGATGTCTAGGAGGGGCAAAATT 60.686 47.826 0.00 0.00 0.00 1.82
272 273 3.825908 TGTCTAGGAGGGGCAAAATTT 57.174 42.857 0.00 0.00 0.00 1.82
273 274 3.697166 TGTCTAGGAGGGGCAAAATTTC 58.303 45.455 0.00 0.00 0.00 2.17
274 275 2.683362 GTCTAGGAGGGGCAAAATTTCG 59.317 50.000 0.00 0.00 0.00 3.46
275 276 2.307686 TCTAGGAGGGGCAAAATTTCGT 59.692 45.455 0.00 0.00 0.00 3.85
276 277 1.256812 AGGAGGGGCAAAATTTCGTG 58.743 50.000 0.00 0.00 0.00 4.35
277 278 0.966179 GGAGGGGCAAAATTTCGTGT 59.034 50.000 0.00 0.00 0.00 4.49
278 279 1.343142 GGAGGGGCAAAATTTCGTGTT 59.657 47.619 0.00 0.00 0.00 3.32
279 280 2.224185 GGAGGGGCAAAATTTCGTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
280 281 3.462982 GAGGGGCAAAATTTCGTGTTTT 58.537 40.909 0.00 0.00 0.00 2.43
281 282 3.202097 AGGGGCAAAATTTCGTGTTTTG 58.798 40.909 14.02 14.02 45.01 2.44
282 283 3.118592 AGGGGCAAAATTTCGTGTTTTGA 60.119 39.130 19.19 0.00 45.02 2.69
284 285 4.190304 GGCAAAATTTCGTGTTTTGACC 57.810 40.909 19.19 16.15 44.81 4.02
285 286 3.001838 GGCAAAATTTCGTGTTTTGACCC 59.998 43.478 19.19 11.78 44.81 4.46
286 287 3.868661 GCAAAATTTCGTGTTTTGACCCT 59.131 39.130 19.19 0.00 45.02 4.34
287 288 4.331443 GCAAAATTTCGTGTTTTGACCCTT 59.669 37.500 19.19 0.00 45.02 3.95
288 289 5.163804 GCAAAATTTCGTGTTTTGACCCTTT 60.164 36.000 19.19 0.00 45.02 3.11
289 290 6.621812 GCAAAATTTCGTGTTTTGACCCTTTT 60.622 34.615 19.19 0.00 45.02 2.27
290 291 7.301789 CAAAATTTCGTGTTTTGACCCTTTTT 58.698 30.769 13.46 0.00 45.02 1.94
291 292 6.415798 AATTTCGTGTTTTGACCCTTTTTG 57.584 33.333 0.00 0.00 0.00 2.44
292 293 2.882324 TCGTGTTTTGACCCTTTTTGC 58.118 42.857 0.00 0.00 0.00 3.68
293 294 2.494073 TCGTGTTTTGACCCTTTTTGCT 59.506 40.909 0.00 0.00 0.00 3.91
294 295 3.695060 TCGTGTTTTGACCCTTTTTGCTA 59.305 39.130 0.00 0.00 0.00 3.49
295 296 4.158025 TCGTGTTTTGACCCTTTTTGCTAA 59.842 37.500 0.00 0.00 0.00 3.09
296 297 4.266739 CGTGTTTTGACCCTTTTTGCTAAC 59.733 41.667 0.00 0.00 0.00 2.34
297 298 5.172205 GTGTTTTGACCCTTTTTGCTAACA 58.828 37.500 0.00 0.00 0.00 2.41
298 299 5.639931 GTGTTTTGACCCTTTTTGCTAACAA 59.360 36.000 0.00 0.00 0.00 2.83
299 300 6.147985 GTGTTTTGACCCTTTTTGCTAACAAA 59.852 34.615 0.00 0.00 43.97 2.83
300 301 6.881602 TGTTTTGACCCTTTTTGCTAACAAAT 59.118 30.769 0.00 0.00 44.96 2.32
301 302 7.391833 TGTTTTGACCCTTTTTGCTAACAAATT 59.608 29.630 0.00 0.00 44.96 1.82
302 303 7.546778 TTTGACCCTTTTTGCTAACAAATTC 57.453 32.000 0.00 0.00 44.96 2.17
303 304 6.227298 TGACCCTTTTTGCTAACAAATTCA 57.773 33.333 0.00 0.00 44.96 2.57
304 305 6.279882 TGACCCTTTTTGCTAACAAATTCAG 58.720 36.000 0.00 0.00 44.96 3.02
305 306 5.610398 ACCCTTTTTGCTAACAAATTCAGG 58.390 37.500 0.00 0.00 44.96 3.86
306 307 5.365314 ACCCTTTTTGCTAACAAATTCAGGA 59.635 36.000 11.13 0.00 44.96 3.86
307 308 6.043127 ACCCTTTTTGCTAACAAATTCAGGAT 59.957 34.615 11.13 0.00 44.96 3.24
308 309 6.591448 CCCTTTTTGCTAACAAATTCAGGATC 59.409 38.462 11.13 0.00 44.96 3.36
309 310 7.381323 CCTTTTTGCTAACAAATTCAGGATCT 58.619 34.615 6.29 0.00 44.96 2.75
310 311 7.330208 CCTTTTTGCTAACAAATTCAGGATCTG 59.670 37.037 6.29 0.00 44.96 2.90
311 312 7.523293 TTTTGCTAACAAATTCAGGATCTGA 57.477 32.000 0.00 0.00 44.96 3.27
312 313 6.500684 TTGCTAACAAATTCAGGATCTGAC 57.499 37.500 0.00 0.00 34.82 3.51
313 314 4.943705 TGCTAACAAATTCAGGATCTGACC 59.056 41.667 0.00 0.00 40.46 4.02
314 315 4.336713 GCTAACAAATTCAGGATCTGACCC 59.663 45.833 0.00 0.00 40.46 4.46
315 316 3.372440 ACAAATTCAGGATCTGACCCC 57.628 47.619 0.00 0.00 40.46 4.95
316 317 2.024941 ACAAATTCAGGATCTGACCCCC 60.025 50.000 0.00 0.00 40.46 5.40
317 318 0.839946 AATTCAGGATCTGACCCCCG 59.160 55.000 0.00 0.00 40.46 5.73
318 319 0.326618 ATTCAGGATCTGACCCCCGT 60.327 55.000 0.00 0.00 40.46 5.28
319 320 0.546747 TTCAGGATCTGACCCCCGTT 60.547 55.000 0.00 0.00 40.46 4.44
320 321 0.546747 TCAGGATCTGACCCCCGTTT 60.547 55.000 0.00 0.00 35.39 3.60
321 322 0.392998 CAGGATCTGACCCCCGTTTG 60.393 60.000 0.00 0.00 32.44 2.93
322 323 0.546747 AGGATCTGACCCCCGTTTGA 60.547 55.000 0.00 0.00 0.00 2.69
323 324 0.326927 GGATCTGACCCCCGTTTGAA 59.673 55.000 0.00 0.00 0.00 2.69
324 325 1.679032 GGATCTGACCCCCGTTTGAAG 60.679 57.143 0.00 0.00 0.00 3.02
325 326 1.278127 GATCTGACCCCCGTTTGAAGA 59.722 52.381 0.00 0.00 0.00 2.87
326 327 1.358152 TCTGACCCCCGTTTGAAGAT 58.642 50.000 0.00 0.00 0.00 2.40
327 328 2.542550 TCTGACCCCCGTTTGAAGATA 58.457 47.619 0.00 0.00 0.00 1.98
328 329 3.112263 TCTGACCCCCGTTTGAAGATAT 58.888 45.455 0.00 0.00 0.00 1.63
329 330 3.521937 TCTGACCCCCGTTTGAAGATATT 59.478 43.478 0.00 0.00 0.00 1.28
330 331 4.018779 TCTGACCCCCGTTTGAAGATATTT 60.019 41.667 0.00 0.00 0.00 1.40
331 332 4.266714 TGACCCCCGTTTGAAGATATTTC 58.733 43.478 0.00 0.00 0.00 2.17
332 333 4.263550 TGACCCCCGTTTGAAGATATTTCA 60.264 41.667 0.00 0.00 0.00 2.69
333 334 4.270008 ACCCCCGTTTGAAGATATTTCAG 58.730 43.478 2.18 0.00 0.00 3.02
334 335 3.632145 CCCCCGTTTGAAGATATTTCAGG 59.368 47.826 2.18 0.00 0.00 3.86
335 336 4.523083 CCCCGTTTGAAGATATTTCAGGA 58.477 43.478 0.00 0.00 0.00 3.86
336 337 5.133221 CCCCGTTTGAAGATATTTCAGGAT 58.867 41.667 0.00 0.00 0.00 3.24
337 338 5.239525 CCCCGTTTGAAGATATTTCAGGATC 59.760 44.000 0.00 0.00 0.00 3.36
338 339 6.058183 CCCGTTTGAAGATATTTCAGGATCT 58.942 40.000 0.00 0.00 33.75 2.75
339 340 6.017605 CCCGTTTGAAGATATTTCAGGATCTG 60.018 42.308 0.00 0.00 32.66 2.90
340 341 6.763135 CCGTTTGAAGATATTTCAGGATCTGA 59.237 38.462 0.00 0.00 38.87 3.27
341 342 7.254590 CCGTTTGAAGATATTTCAGGATCTGAC 60.255 40.741 0.00 0.00 40.46 3.51
342 343 7.254590 CGTTTGAAGATATTTCAGGATCTGACC 60.255 40.741 0.00 0.00 40.46 4.02
343 344 6.179906 TGAAGATATTTCAGGATCTGACCC 57.820 41.667 0.00 0.00 40.46 4.46
344 345 5.907662 TGAAGATATTTCAGGATCTGACCCT 59.092 40.000 0.00 0.00 40.46 4.34
345 346 6.388100 TGAAGATATTTCAGGATCTGACCCTT 59.612 38.462 0.00 0.00 40.46 3.95
346 347 6.838401 AGATATTTCAGGATCTGACCCTTT 57.162 37.500 0.00 0.00 40.46 3.11
347 348 7.218314 AGATATTTCAGGATCTGACCCTTTT 57.782 36.000 0.00 0.00 40.46 2.27
363 364 3.653664 TTTGCCTACCGCCATGGGG 62.654 63.158 21.60 21.60 44.64 4.96
418 419 3.470888 CTGGCGGTAGGGTCCTGG 61.471 72.222 0.00 0.00 0.00 4.45
420 421 4.791069 GGCGGTAGGGTCCTGGGA 62.791 72.222 0.00 0.00 0.00 4.37
762 863 3.117776 GGGTTAGGGTTAGGGTTATGGTG 60.118 52.174 0.00 0.00 0.00 4.17
871 1033 3.125656 GGGGTTATGGTTAGGGTTAGGT 58.874 50.000 0.00 0.00 0.00 3.08
959 1135 2.315176 TGTCCATTTGAGTTGGTTGGG 58.685 47.619 0.00 0.00 35.64 4.12
1032 1209 8.050778 AGCTCGTAAATGTTCATTATTTGGAA 57.949 30.769 0.00 0.00 0.00 3.53
1245 1422 2.307496 TCACCTCCCAATTGCATTGT 57.693 45.000 0.00 0.00 38.59 2.71
1273 1450 5.006941 GTGTACAAGGAAAAAGTAGACGCAA 59.993 40.000 0.00 0.00 0.00 4.85
1375 1553 5.577100 CATCCTCCCCAATACATGATGATT 58.423 41.667 0.00 0.00 31.98 2.57
1548 1807 3.603532 TGTTGCTCAAGAGGATGCTTAG 58.396 45.455 0.00 0.00 0.00 2.18
1755 2014 3.011517 GGCAAGGAGAGAGGGCCA 61.012 66.667 6.18 0.00 44.01 5.36
1862 2121 3.369892 CCCAAATTCAGTGATCCTCGACT 60.370 47.826 0.00 0.00 0.00 4.18
2087 2347 1.337118 GGGCAATGGGTGTTGAAGAA 58.663 50.000 0.00 0.00 0.00 2.52
2136 2396 2.342648 GACAAGGCCGACCGAAGT 59.657 61.111 0.00 0.00 42.76 3.01
2386 2646 0.616371 TCATCGAAACCCGGGAATGT 59.384 50.000 32.02 8.82 39.14 2.71
2457 2717 0.896923 TTGGACAATGCATTGAGGCC 59.103 50.000 38.99 32.47 40.14 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.633830 TTGTCTTCGTCTATCGGTAACTT 57.366 39.130 0.00 0.00 40.32 2.66
1 2 5.633830 TTTGTCTTCGTCTATCGGTAACT 57.366 39.130 0.00 0.00 40.32 2.24
7 8 4.106197 CCCTCTTTTGTCTTCGTCTATCG 58.894 47.826 0.00 0.00 41.41 2.92
8 9 4.159879 TCCCCTCTTTTGTCTTCGTCTATC 59.840 45.833 0.00 0.00 0.00 2.08
9 10 4.094476 TCCCCTCTTTTGTCTTCGTCTAT 58.906 43.478 0.00 0.00 0.00 1.98
10 11 3.503365 TCCCCTCTTTTGTCTTCGTCTA 58.497 45.455 0.00 0.00 0.00 2.59
11 12 2.326428 TCCCCTCTTTTGTCTTCGTCT 58.674 47.619 0.00 0.00 0.00 4.18
12 13 2.833631 TCCCCTCTTTTGTCTTCGTC 57.166 50.000 0.00 0.00 0.00 4.20
13 14 2.876079 GCATCCCCTCTTTTGTCTTCGT 60.876 50.000 0.00 0.00 0.00 3.85
14 15 1.740025 GCATCCCCTCTTTTGTCTTCG 59.260 52.381 0.00 0.00 0.00 3.79
15 16 2.095461 GGCATCCCCTCTTTTGTCTTC 58.905 52.381 0.00 0.00 0.00 2.87
17 18 1.376649 AGGCATCCCCTCTTTTGTCT 58.623 50.000 0.00 0.00 41.21 3.41
18 19 2.095461 GAAGGCATCCCCTCTTTTGTC 58.905 52.381 0.00 0.00 45.62 3.18
19 20 1.272704 GGAAGGCATCCCCTCTTTTGT 60.273 52.381 0.00 0.00 45.62 2.83
20 21 1.478631 GGAAGGCATCCCCTCTTTTG 58.521 55.000 0.00 0.00 45.62 2.44
21 22 0.034089 CGGAAGGCATCCCCTCTTTT 60.034 55.000 2.68 0.00 45.62 2.27
22 23 1.609783 CGGAAGGCATCCCCTCTTT 59.390 57.895 2.68 0.00 45.62 2.52
23 24 3.324713 CGGAAGGCATCCCCTCTT 58.675 61.111 2.68 0.00 45.62 2.85
41 42 1.152673 CCTAAGCTTGGGGATGCCC 60.153 63.158 20.71 16.99 44.51 5.36
42 43 1.829970 GCCTAAGCTTGGGGATGCC 60.830 63.158 28.06 9.13 35.50 4.40
43 44 3.847621 GCCTAAGCTTGGGGATGC 58.152 61.111 28.06 11.54 35.50 3.91
49 50 6.586952 GGACAACCAAAAGCCTAAGCTTGG 62.587 50.000 9.86 5.91 46.58 3.61
50 51 3.552890 GGACAACCAAAAGCCTAAGCTTG 60.553 47.826 9.86 0.00 46.58 4.01
52 53 2.158460 AGGACAACCAAAAGCCTAAGCT 60.158 45.455 0.00 0.00 45.56 3.74
53 54 2.239400 AGGACAACCAAAAGCCTAAGC 58.761 47.619 0.00 0.00 38.94 3.09
54 55 3.888930 TCAAGGACAACCAAAAGCCTAAG 59.111 43.478 0.00 0.00 38.94 2.18
55 56 3.904717 TCAAGGACAACCAAAAGCCTAA 58.095 40.909 0.00 0.00 38.94 2.69
56 57 3.586470 TCAAGGACAACCAAAAGCCTA 57.414 42.857 0.00 0.00 38.94 3.93
57 58 2.452600 TCAAGGACAACCAAAAGCCT 57.547 45.000 0.00 0.00 38.94 4.58
58 59 3.751479 ATTCAAGGACAACCAAAAGCC 57.249 42.857 0.00 0.00 38.94 4.35
59 60 6.018262 GGTAAAATTCAAGGACAACCAAAAGC 60.018 38.462 0.00 0.00 38.94 3.51
60 61 7.272244 AGGTAAAATTCAAGGACAACCAAAAG 58.728 34.615 0.00 0.00 38.94 2.27
61 62 7.189079 AGGTAAAATTCAAGGACAACCAAAA 57.811 32.000 0.00 0.00 38.94 2.44
62 63 6.800072 AGGTAAAATTCAAGGACAACCAAA 57.200 33.333 0.00 0.00 38.94 3.28
63 64 6.407525 CCAAGGTAAAATTCAAGGACAACCAA 60.408 38.462 0.00 0.00 38.94 3.67
64 65 5.069781 CCAAGGTAAAATTCAAGGACAACCA 59.930 40.000 0.00 0.00 38.94 3.67
65 66 5.510690 CCCAAGGTAAAATTCAAGGACAACC 60.511 44.000 0.00 0.00 0.00 3.77
66 67 5.510690 CCCCAAGGTAAAATTCAAGGACAAC 60.511 44.000 0.00 0.00 0.00 3.32
67 68 4.591072 CCCCAAGGTAAAATTCAAGGACAA 59.409 41.667 0.00 0.00 0.00 3.18
68 69 4.156477 CCCCAAGGTAAAATTCAAGGACA 58.844 43.478 0.00 0.00 0.00 4.02
69 70 4.801330 CCCCAAGGTAAAATTCAAGGAC 57.199 45.455 0.00 0.00 0.00 3.85
97 98 1.152673 CCTAAGCTTGGGGATGCCC 60.153 63.158 20.71 16.99 44.51 5.36
98 99 1.829970 GCCTAAGCTTGGGGATGCC 60.830 63.158 28.06 9.13 35.50 4.40
99 100 3.847621 GCCTAAGCTTGGGGATGC 58.152 61.111 28.06 11.54 35.50 3.91
115 116 0.940833 GAATAAGGAGCGGCAAGAGC 59.059 55.000 1.45 0.00 41.10 4.09
116 117 1.134401 TGGAATAAGGAGCGGCAAGAG 60.134 52.381 1.45 0.00 0.00 2.85
117 118 0.908910 TGGAATAAGGAGCGGCAAGA 59.091 50.000 1.45 0.00 0.00 3.02
118 119 1.750193 TTGGAATAAGGAGCGGCAAG 58.250 50.000 1.45 0.00 0.00 4.01
119 120 2.208132 TTTGGAATAAGGAGCGGCAA 57.792 45.000 1.45 0.00 0.00 4.52
120 121 2.208132 TTTTGGAATAAGGAGCGGCA 57.792 45.000 1.45 0.00 0.00 5.69
121 122 2.034685 GGATTTTGGAATAAGGAGCGGC 59.965 50.000 0.00 0.00 0.00 6.53
122 123 3.287222 TGGATTTTGGAATAAGGAGCGG 58.713 45.455 0.00 0.00 0.00 5.52
123 124 4.580167 TGATGGATTTTGGAATAAGGAGCG 59.420 41.667 0.00 0.00 0.00 5.03
124 125 6.469782 TTGATGGATTTTGGAATAAGGAGC 57.530 37.500 0.00 0.00 0.00 4.70
125 126 8.921205 AGATTTGATGGATTTTGGAATAAGGAG 58.079 33.333 0.00 0.00 0.00 3.69
126 127 8.843308 AGATTTGATGGATTTTGGAATAAGGA 57.157 30.769 0.00 0.00 0.00 3.36
127 128 9.895138 AAAGATTTGATGGATTTTGGAATAAGG 57.105 29.630 0.00 0.00 0.00 2.69
131 132 8.267183 GGGTAAAGATTTGATGGATTTTGGAAT 58.733 33.333 0.00 0.00 0.00 3.01
132 133 7.236432 TGGGTAAAGATTTGATGGATTTTGGAA 59.764 33.333 0.00 0.00 0.00 3.53
133 134 6.728164 TGGGTAAAGATTTGATGGATTTTGGA 59.272 34.615 0.00 0.00 0.00 3.53
134 135 6.945218 TGGGTAAAGATTTGATGGATTTTGG 58.055 36.000 0.00 0.00 0.00 3.28
135 136 8.845413 TTTGGGTAAAGATTTGATGGATTTTG 57.155 30.769 0.00 0.00 0.00 2.44
136 137 9.859152 TTTTTGGGTAAAGATTTGATGGATTTT 57.141 25.926 0.00 0.00 0.00 1.82
137 138 9.283768 GTTTTTGGGTAAAGATTTGATGGATTT 57.716 29.630 0.00 0.00 0.00 2.17
138 139 8.659527 AGTTTTTGGGTAAAGATTTGATGGATT 58.340 29.630 0.00 0.00 0.00 3.01
139 140 8.206126 AGTTTTTGGGTAAAGATTTGATGGAT 57.794 30.769 0.00 0.00 0.00 3.41
140 141 7.610580 AGTTTTTGGGTAAAGATTTGATGGA 57.389 32.000 0.00 0.00 0.00 3.41
141 142 7.930865 TCAAGTTTTTGGGTAAAGATTTGATGG 59.069 33.333 0.00 0.00 34.19 3.51
142 143 8.885494 TCAAGTTTTTGGGTAAAGATTTGATG 57.115 30.769 0.00 0.00 34.19 3.07
143 144 9.898152 TTTCAAGTTTTTGGGTAAAGATTTGAT 57.102 25.926 0.00 0.00 36.88 2.57
144 145 9.726438 TTTTCAAGTTTTTGGGTAAAGATTTGA 57.274 25.926 0.00 0.00 35.95 2.69
145 146 9.767684 GTTTTCAAGTTTTTGGGTAAAGATTTG 57.232 29.630 0.00 0.00 32.45 2.32
146 147 9.733556 AGTTTTCAAGTTTTTGGGTAAAGATTT 57.266 25.926 0.00 0.00 34.97 2.17
147 148 9.733556 AAGTTTTCAAGTTTTTGGGTAAAGATT 57.266 25.926 0.00 0.00 34.97 2.40
148 149 9.378551 GAAGTTTTCAAGTTTTTGGGTAAAGAT 57.621 29.630 0.00 0.00 34.97 2.40
149 150 8.368668 TGAAGTTTTCAAGTTTTTGGGTAAAGA 58.631 29.630 0.00 0.00 36.59 2.52
150 151 8.440059 GTGAAGTTTTCAAGTTTTTGGGTAAAG 58.560 33.333 0.00 0.00 42.15 1.85
151 152 7.931948 TGTGAAGTTTTCAAGTTTTTGGGTAAA 59.068 29.630 0.00 0.00 42.15 2.01
152 153 7.442656 TGTGAAGTTTTCAAGTTTTTGGGTAA 58.557 30.769 0.00 0.00 42.15 2.85
153 154 6.994221 TGTGAAGTTTTCAAGTTTTTGGGTA 58.006 32.000 0.00 0.00 42.15 3.69
154 155 5.859495 TGTGAAGTTTTCAAGTTTTTGGGT 58.141 33.333 0.00 0.00 42.15 4.51
155 156 6.203723 TGTTGTGAAGTTTTCAAGTTTTTGGG 59.796 34.615 0.00 0.00 42.15 4.12
156 157 7.068955 GTGTTGTGAAGTTTTCAAGTTTTTGG 58.931 34.615 0.00 0.00 42.15 3.28
157 158 7.625553 TGTGTTGTGAAGTTTTCAAGTTTTTG 58.374 30.769 0.00 0.00 42.15 2.44
158 159 7.778470 TGTGTTGTGAAGTTTTCAAGTTTTT 57.222 28.000 0.00 0.00 42.15 1.94
159 160 7.778470 TTGTGTTGTGAAGTTTTCAAGTTTT 57.222 28.000 0.00 0.00 42.15 2.43
160 161 7.778470 TTTGTGTTGTGAAGTTTTCAAGTTT 57.222 28.000 0.00 0.00 42.15 2.66
161 162 7.494298 AGTTTTGTGTTGTGAAGTTTTCAAGTT 59.506 29.630 0.00 0.00 42.15 2.66
162 163 6.983890 AGTTTTGTGTTGTGAAGTTTTCAAGT 59.016 30.769 0.00 0.00 42.15 3.16
163 164 7.168972 TGAGTTTTGTGTTGTGAAGTTTTCAAG 59.831 33.333 0.00 0.00 42.15 3.02
164 165 6.980978 TGAGTTTTGTGTTGTGAAGTTTTCAA 59.019 30.769 0.00 0.00 42.15 2.69
165 166 6.507900 TGAGTTTTGTGTTGTGAAGTTTTCA 58.492 32.000 0.00 0.00 37.33 2.69
166 167 7.401484 TTGAGTTTTGTGTTGTGAAGTTTTC 57.599 32.000 0.00 0.00 0.00 2.29
167 168 7.961325 ATTGAGTTTTGTGTTGTGAAGTTTT 57.039 28.000 0.00 0.00 0.00 2.43
168 169 8.519526 TCTATTGAGTTTTGTGTTGTGAAGTTT 58.480 29.630 0.00 0.00 0.00 2.66
169 170 8.050778 TCTATTGAGTTTTGTGTTGTGAAGTT 57.949 30.769 0.00 0.00 0.00 2.66
170 171 7.624360 TCTATTGAGTTTTGTGTTGTGAAGT 57.376 32.000 0.00 0.00 0.00 3.01
171 172 8.909708 TTTCTATTGAGTTTTGTGTTGTGAAG 57.090 30.769 0.00 0.00 0.00 3.02
172 173 9.868277 ATTTTCTATTGAGTTTTGTGTTGTGAA 57.132 25.926 0.00 0.00 0.00 3.18
173 174 9.515020 GATTTTCTATTGAGTTTTGTGTTGTGA 57.485 29.630 0.00 0.00 0.00 3.58
174 175 9.520204 AGATTTTCTATTGAGTTTTGTGTTGTG 57.480 29.630 0.00 0.00 0.00 3.33
175 176 9.736023 GAGATTTTCTATTGAGTTTTGTGTTGT 57.264 29.630 0.00 0.00 0.00 3.32
176 177 9.734620 TGAGATTTTCTATTGAGTTTTGTGTTG 57.265 29.630 0.00 0.00 0.00 3.33
178 179 9.903682 CATGAGATTTTCTATTGAGTTTTGTGT 57.096 29.630 0.00 0.00 0.00 3.72
179 180 9.903682 ACATGAGATTTTCTATTGAGTTTTGTG 57.096 29.630 0.00 0.00 0.00 3.33
181 182 9.270576 CGACATGAGATTTTCTATTGAGTTTTG 57.729 33.333 0.00 0.00 0.00 2.44
182 183 8.454106 CCGACATGAGATTTTCTATTGAGTTTT 58.546 33.333 0.00 0.00 0.00 2.43
183 184 7.066284 CCCGACATGAGATTTTCTATTGAGTTT 59.934 37.037 0.00 0.00 0.00 2.66
184 185 6.540189 CCCGACATGAGATTTTCTATTGAGTT 59.460 38.462 0.00 0.00 0.00 3.01
185 186 6.051717 CCCGACATGAGATTTTCTATTGAGT 58.948 40.000 0.00 0.00 0.00 3.41
186 187 6.201806 GTCCCGACATGAGATTTTCTATTGAG 59.798 42.308 0.00 0.00 0.00 3.02
187 188 6.049149 GTCCCGACATGAGATTTTCTATTGA 58.951 40.000 0.00 0.00 0.00 2.57
188 189 5.050769 CGTCCCGACATGAGATTTTCTATTG 60.051 44.000 0.00 0.00 0.00 1.90
189 190 5.050490 CGTCCCGACATGAGATTTTCTATT 58.950 41.667 0.00 0.00 0.00 1.73
190 191 4.501571 CCGTCCCGACATGAGATTTTCTAT 60.502 45.833 0.00 0.00 0.00 1.98
191 192 3.181479 CCGTCCCGACATGAGATTTTCTA 60.181 47.826 0.00 0.00 0.00 2.10
192 193 2.418746 CCGTCCCGACATGAGATTTTCT 60.419 50.000 0.00 0.00 0.00 2.52
193 194 1.933853 CCGTCCCGACATGAGATTTTC 59.066 52.381 0.00 0.00 0.00 2.29
194 195 1.406887 CCCGTCCCGACATGAGATTTT 60.407 52.381 0.00 0.00 0.00 1.82
195 196 0.178068 CCCGTCCCGACATGAGATTT 59.822 55.000 0.00 0.00 0.00 2.17
196 197 0.976073 ACCCGTCCCGACATGAGATT 60.976 55.000 0.00 0.00 0.00 2.40
197 198 1.381327 ACCCGTCCCGACATGAGAT 60.381 57.895 0.00 0.00 0.00 2.75
198 199 2.036731 ACCCGTCCCGACATGAGA 59.963 61.111 0.00 0.00 0.00 3.27
199 200 2.184322 CACCCGTCCCGACATGAG 59.816 66.667 0.00 0.00 0.00 2.90
200 201 3.387091 CCACCCGTCCCGACATGA 61.387 66.667 0.00 0.00 0.00 3.07
213 214 4.643387 ACCTGACCAAGCGCCACC 62.643 66.667 2.29 0.00 0.00 4.61
214 215 3.357079 CACCTGACCAAGCGCCAC 61.357 66.667 2.29 0.00 0.00 5.01
217 218 3.426568 GAGCACCTGACCAAGCGC 61.427 66.667 0.00 0.00 0.00 5.92
218 219 3.114616 CGAGCACCTGACCAAGCG 61.115 66.667 0.00 0.00 0.00 4.68
219 220 2.743928 CCGAGCACCTGACCAAGC 60.744 66.667 0.00 0.00 0.00 4.01
220 221 2.743928 GCCGAGCACCTGACCAAG 60.744 66.667 0.00 0.00 0.00 3.61
221 222 4.680237 CGCCGAGCACCTGACCAA 62.680 66.667 0.00 0.00 0.00 3.67
236 237 3.869272 CATCGTTGGAGCAGCCGC 61.869 66.667 0.00 0.00 40.66 6.53
237 238 2.434884 ACATCGTTGGAGCAGCCG 60.435 61.111 0.00 0.00 40.66 5.52
238 239 0.175760 TAGACATCGTTGGAGCAGCC 59.824 55.000 0.00 0.00 37.10 4.85
239 240 1.565305 CTAGACATCGTTGGAGCAGC 58.435 55.000 0.00 0.00 0.00 5.25
240 241 1.751351 TCCTAGACATCGTTGGAGCAG 59.249 52.381 0.00 0.00 0.00 4.24
241 242 1.751351 CTCCTAGACATCGTTGGAGCA 59.249 52.381 0.00 0.00 37.98 4.26
242 243 1.067821 CCTCCTAGACATCGTTGGAGC 59.932 57.143 0.00 0.00 41.99 4.70
243 244 1.683917 CCCTCCTAGACATCGTTGGAG 59.316 57.143 0.00 0.00 42.72 3.86
244 245 1.688311 CCCCTCCTAGACATCGTTGGA 60.688 57.143 0.00 0.00 0.00 3.53
245 246 0.753262 CCCCTCCTAGACATCGTTGG 59.247 60.000 0.00 0.00 0.00 3.77
246 247 0.105039 GCCCCTCCTAGACATCGTTG 59.895 60.000 0.00 0.00 0.00 4.10
247 248 0.325296 TGCCCCTCCTAGACATCGTT 60.325 55.000 0.00 0.00 0.00 3.85
248 249 0.325296 TTGCCCCTCCTAGACATCGT 60.325 55.000 0.00 0.00 0.00 3.73
249 250 0.830648 TTTGCCCCTCCTAGACATCG 59.169 55.000 0.00 0.00 0.00 3.84
250 251 3.584733 ATTTTGCCCCTCCTAGACATC 57.415 47.619 0.00 0.00 0.00 3.06
251 252 4.281657 GAAATTTTGCCCCTCCTAGACAT 58.718 43.478 0.00 0.00 0.00 3.06
252 253 3.697166 GAAATTTTGCCCCTCCTAGACA 58.303 45.455 0.00 0.00 0.00 3.41
253 254 2.683362 CGAAATTTTGCCCCTCCTAGAC 59.317 50.000 0.00 0.00 0.00 2.59
254 255 2.307686 ACGAAATTTTGCCCCTCCTAGA 59.692 45.455 5.27 0.00 0.00 2.43
255 256 2.423538 CACGAAATTTTGCCCCTCCTAG 59.576 50.000 5.27 0.00 0.00 3.02
256 257 2.224917 ACACGAAATTTTGCCCCTCCTA 60.225 45.455 5.27 0.00 0.00 2.94
257 258 1.256812 CACGAAATTTTGCCCCTCCT 58.743 50.000 5.27 0.00 0.00 3.69
258 259 0.966179 ACACGAAATTTTGCCCCTCC 59.034 50.000 5.27 0.00 0.00 4.30
259 260 2.812358 AACACGAAATTTTGCCCCTC 57.188 45.000 5.27 0.00 0.00 4.30
260 261 3.118592 TCAAAACACGAAATTTTGCCCCT 60.119 39.130 5.27 0.00 43.62 4.79
261 262 3.001838 GTCAAAACACGAAATTTTGCCCC 59.998 43.478 5.27 5.80 43.62 5.80
262 263 3.001838 GGTCAAAACACGAAATTTTGCCC 59.998 43.478 5.27 11.08 43.62 5.36
263 264 3.001838 GGGTCAAAACACGAAATTTTGCC 59.998 43.478 5.27 16.17 43.62 4.52
264 265 3.868661 AGGGTCAAAACACGAAATTTTGC 59.131 39.130 5.27 11.02 43.62 3.68
265 266 6.415798 AAAGGGTCAAAACACGAAATTTTG 57.584 33.333 3.73 3.73 44.74 2.44
266 267 7.301789 CAAAAAGGGTCAAAACACGAAATTTT 58.698 30.769 0.00 0.00 32.44 1.82
267 268 6.621812 GCAAAAAGGGTCAAAACACGAAATTT 60.622 34.615 0.00 0.00 32.44 1.82
268 269 5.163804 GCAAAAAGGGTCAAAACACGAAATT 60.164 36.000 0.00 0.00 32.44 1.82
269 270 4.331443 GCAAAAAGGGTCAAAACACGAAAT 59.669 37.500 0.00 0.00 32.44 2.17
270 271 3.680458 GCAAAAAGGGTCAAAACACGAAA 59.320 39.130 0.00 0.00 32.44 3.46
271 272 3.056465 AGCAAAAAGGGTCAAAACACGAA 60.056 39.130 0.00 0.00 32.44 3.85
272 273 2.494073 AGCAAAAAGGGTCAAAACACGA 59.506 40.909 0.00 0.00 32.44 4.35
273 274 2.887337 AGCAAAAAGGGTCAAAACACG 58.113 42.857 0.00 0.00 32.44 4.49
274 275 5.172205 TGTTAGCAAAAAGGGTCAAAACAC 58.828 37.500 0.00 0.00 0.00 3.32
275 276 5.407407 TGTTAGCAAAAAGGGTCAAAACA 57.593 34.783 0.00 0.00 0.00 2.83
276 277 6.729391 TTTGTTAGCAAAAAGGGTCAAAAC 57.271 33.333 1.84 0.00 41.15 2.43
277 278 7.607991 TGAATTTGTTAGCAAAAAGGGTCAAAA 59.392 29.630 8.89 0.00 46.23 2.44
278 279 7.106239 TGAATTTGTTAGCAAAAAGGGTCAAA 58.894 30.769 8.89 0.00 46.23 2.69
279 280 6.644347 TGAATTTGTTAGCAAAAAGGGTCAA 58.356 32.000 8.89 0.00 46.23 3.18
280 281 6.227298 TGAATTTGTTAGCAAAAAGGGTCA 57.773 33.333 8.89 5.52 46.23 4.02
281 282 5.696270 CCTGAATTTGTTAGCAAAAAGGGTC 59.304 40.000 8.89 3.30 46.23 4.46
282 283 5.365314 TCCTGAATTTGTTAGCAAAAAGGGT 59.635 36.000 21.19 2.03 46.23 4.34
283 284 5.852827 TCCTGAATTTGTTAGCAAAAAGGG 58.147 37.500 21.19 15.36 46.23 3.95
284 285 7.330208 CAGATCCTGAATTTGTTAGCAAAAAGG 59.670 37.037 18.08 18.08 39.64 3.11
285 286 8.084073 TCAGATCCTGAATTTGTTAGCAAAAAG 58.916 33.333 8.89 7.18 40.38 2.27
286 287 7.867403 GTCAGATCCTGAATTTGTTAGCAAAAA 59.133 33.333 8.89 0.00 42.46 1.94
287 288 7.370383 GTCAGATCCTGAATTTGTTAGCAAAA 58.630 34.615 8.89 0.00 42.46 2.44
288 289 6.071952 GGTCAGATCCTGAATTTGTTAGCAAA 60.072 38.462 7.22 7.22 42.46 3.68
289 290 5.415701 GGTCAGATCCTGAATTTGTTAGCAA 59.584 40.000 0.00 0.00 42.46 3.91
290 291 4.943705 GGTCAGATCCTGAATTTGTTAGCA 59.056 41.667 0.00 0.00 42.46 3.49
291 292 4.336713 GGGTCAGATCCTGAATTTGTTAGC 59.663 45.833 0.00 0.00 42.46 3.09
292 293 4.884164 GGGGTCAGATCCTGAATTTGTTAG 59.116 45.833 0.00 0.00 42.46 2.34
293 294 4.325030 GGGGGTCAGATCCTGAATTTGTTA 60.325 45.833 0.00 0.00 42.46 2.41
294 295 3.564352 GGGGGTCAGATCCTGAATTTGTT 60.564 47.826 0.00 0.00 42.46 2.83
295 296 2.024941 GGGGGTCAGATCCTGAATTTGT 60.025 50.000 0.00 0.00 42.46 2.83
296 297 2.659428 GGGGGTCAGATCCTGAATTTG 58.341 52.381 0.00 0.00 42.46 2.32
297 298 1.212935 CGGGGGTCAGATCCTGAATTT 59.787 52.381 0.00 0.00 42.46 1.82
298 299 0.839946 CGGGGGTCAGATCCTGAATT 59.160 55.000 0.00 0.00 42.46 2.17
299 300 0.326618 ACGGGGGTCAGATCCTGAAT 60.327 55.000 0.00 0.00 42.46 2.57
300 301 0.546747 AACGGGGGTCAGATCCTGAA 60.547 55.000 0.00 0.00 42.46 3.02
301 302 0.546747 AAACGGGGGTCAGATCCTGA 60.547 55.000 0.00 0.00 38.25 3.86
302 303 0.392998 CAAACGGGGGTCAGATCCTG 60.393 60.000 0.00 0.00 35.60 3.86
303 304 0.546747 TCAAACGGGGGTCAGATCCT 60.547 55.000 0.00 0.00 0.00 3.24
304 305 0.326927 TTCAAACGGGGGTCAGATCC 59.673 55.000 0.00 0.00 0.00 3.36
305 306 1.278127 TCTTCAAACGGGGGTCAGATC 59.722 52.381 0.00 0.00 0.00 2.75
306 307 1.358152 TCTTCAAACGGGGGTCAGAT 58.642 50.000 0.00 0.00 0.00 2.90
307 308 1.358152 ATCTTCAAACGGGGGTCAGA 58.642 50.000 0.00 0.00 0.00 3.27
308 309 3.560636 ATATCTTCAAACGGGGGTCAG 57.439 47.619 0.00 0.00 0.00 3.51
309 310 4.263550 TGAAATATCTTCAAACGGGGGTCA 60.264 41.667 0.00 0.00 0.00 4.02
310 311 4.266714 TGAAATATCTTCAAACGGGGGTC 58.733 43.478 0.00 0.00 0.00 4.46
311 312 4.270008 CTGAAATATCTTCAAACGGGGGT 58.730 43.478 0.00 0.00 0.00 4.95
312 313 3.632145 CCTGAAATATCTTCAAACGGGGG 59.368 47.826 0.00 0.00 0.00 5.40
313 314 4.523083 TCCTGAAATATCTTCAAACGGGG 58.477 43.478 0.00 0.00 0.00 5.73
314 315 6.017605 CAGATCCTGAAATATCTTCAAACGGG 60.018 42.308 0.00 0.00 32.44 5.28
315 316 6.763135 TCAGATCCTGAAATATCTTCAAACGG 59.237 38.462 0.00 2.20 37.57 4.44
316 317 7.254590 GGTCAGATCCTGAAATATCTTCAAACG 60.255 40.741 0.00 0.00 42.46 3.60
317 318 7.012799 GGGTCAGATCCTGAAATATCTTCAAAC 59.987 40.741 0.00 0.00 42.46 2.93
318 319 7.056635 GGGTCAGATCCTGAAATATCTTCAAA 58.943 38.462 0.00 0.00 42.46 2.69
319 320 6.388100 AGGGTCAGATCCTGAAATATCTTCAA 59.612 38.462 0.00 0.00 42.46 2.69
320 321 5.907662 AGGGTCAGATCCTGAAATATCTTCA 59.092 40.000 0.00 1.96 42.46 3.02
321 322 6.432403 AGGGTCAGATCCTGAAATATCTTC 57.568 41.667 0.00 0.00 42.46 2.87
322 323 6.838401 AAGGGTCAGATCCTGAAATATCTT 57.162 37.500 1.77 0.00 42.46 2.40
323 324 6.838401 AAAGGGTCAGATCCTGAAATATCT 57.162 37.500 1.77 0.00 42.46 1.98
324 325 6.238869 GCAAAAGGGTCAGATCCTGAAATATC 60.239 42.308 1.77 0.00 42.46 1.63
325 326 5.595952 GCAAAAGGGTCAGATCCTGAAATAT 59.404 40.000 1.77 0.00 42.46 1.28
326 327 4.949856 GCAAAAGGGTCAGATCCTGAAATA 59.050 41.667 1.77 0.00 42.46 1.40
327 328 3.766051 GCAAAAGGGTCAGATCCTGAAAT 59.234 43.478 1.77 0.00 42.46 2.17
328 329 3.157087 GCAAAAGGGTCAGATCCTGAAA 58.843 45.455 1.77 0.00 42.46 2.69
329 330 2.555227 GGCAAAAGGGTCAGATCCTGAA 60.555 50.000 1.77 0.00 42.46 3.02
330 331 1.004745 GGCAAAAGGGTCAGATCCTGA 59.995 52.381 1.77 0.00 38.25 3.86
331 332 1.005215 AGGCAAAAGGGTCAGATCCTG 59.995 52.381 1.77 0.00 34.34 3.86
332 333 1.376649 AGGCAAAAGGGTCAGATCCT 58.623 50.000 0.00 0.00 35.88 3.24
333 334 2.644676 GTAGGCAAAAGGGTCAGATCC 58.355 52.381 0.00 0.00 0.00 3.36
334 335 2.644676 GGTAGGCAAAAGGGTCAGATC 58.355 52.381 0.00 0.00 0.00 2.75
335 336 1.065418 CGGTAGGCAAAAGGGTCAGAT 60.065 52.381 0.00 0.00 0.00 2.90
336 337 0.323629 CGGTAGGCAAAAGGGTCAGA 59.676 55.000 0.00 0.00 0.00 3.27
337 338 1.305930 GCGGTAGGCAAAAGGGTCAG 61.306 60.000 0.00 0.00 42.87 3.51
338 339 1.302993 GCGGTAGGCAAAAGGGTCA 60.303 57.895 0.00 0.00 42.87 4.02
339 340 2.044555 GGCGGTAGGCAAAAGGGTC 61.045 63.158 0.00 0.00 46.16 4.46
340 341 2.035155 GGCGGTAGGCAAAAGGGT 59.965 61.111 0.00 0.00 46.16 4.34
363 364 0.682209 TCAGTACCCTACCGCCAGAC 60.682 60.000 0.00 0.00 0.00 3.51
394 395 2.722201 CCCTACCGCCAGAGGTGAC 61.722 68.421 3.03 0.00 45.54 3.67
418 419 0.327191 TCCCCACCTTATCCACCTCC 60.327 60.000 0.00 0.00 0.00 4.30
420 421 0.327576 CCTCCCCACCTTATCCACCT 60.328 60.000 0.00 0.00 0.00 4.00
662 676 1.202891 GGTCAACACCTAGGGTTTGCT 60.203 52.381 14.81 0.00 40.00 3.91
762 863 4.528987 ACCAACATAACCCCCAACATAAAC 59.471 41.667 0.00 0.00 0.00 2.01
1032 1209 8.149647 TCATTTCCAAGCATAAATGTCAACTTT 58.850 29.630 0.00 0.00 41.62 2.66
1037 1214 5.414144 TCGTCATTTCCAAGCATAAATGTCA 59.586 36.000 0.00 0.00 41.62 3.58
1245 1422 7.095523 GCGTCTACTTTTTCCTTGTACACATTA 60.096 37.037 0.00 0.00 0.00 1.90
1375 1553 1.594833 GGACATACACCTCGGCACA 59.405 57.895 0.00 0.00 0.00 4.57
1548 1807 4.599047 ATGGATCTCTTCATTCTCCGAC 57.401 45.455 0.00 0.00 0.00 4.79
1595 1854 0.664166 GTCTTGTTGCCGCACAATGG 60.664 55.000 0.00 0.00 41.27 3.16
1737 1996 3.011517 GGCCCTCTCTCCTTGCCA 61.012 66.667 0.00 0.00 41.76 4.92
1755 2014 2.370849 ACTCACATCCCTAAACAACGGT 59.629 45.455 0.00 0.00 0.00 4.83
1862 2121 6.892485 TGAGCATTCTCATCCTCATTTTCTA 58.108 36.000 0.00 0.00 43.95 2.10
2087 2347 1.159285 CGTGTGAGTGCCAACATGAT 58.841 50.000 0.00 0.00 0.00 2.45
2136 2396 3.070446 ACATGAGTTGACGGTGTCCTTTA 59.930 43.478 0.00 0.00 0.00 1.85
2423 2683 0.700564 TCCAAAGCTCCAGAAGGCAT 59.299 50.000 0.00 0.00 33.74 4.40
2457 2717 1.418342 CCGGGCGACAATACGTGAAG 61.418 60.000 0.00 0.00 35.59 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.