Multiple sequence alignment - TraesCS1D01G365200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G365200 chr1D 100.000 3787 0 0 1 3787 445643716 445639930 0.000000e+00 6994.0
1 TraesCS1D01G365200 chr1A 93.401 2758 95 31 446 3164 541896231 541893522 0.000000e+00 4004.0
2 TraesCS1D01G365200 chr1A 95.726 585 10 5 3208 3787 541893521 541892947 0.000000e+00 928.0
3 TraesCS1D01G365200 chr1B 91.644 2561 114 45 1180 3658 608996297 608993755 0.000000e+00 3452.0
4 TraesCS1D01G365200 chr1B 90.000 500 19 5 652 1147 608996758 608996286 5.370000e-173 617.0
5 TraesCS1D01G365200 chr1B 97.368 38 1 0 3731 3768 608991846 608991809 8.780000e-07 65.8
6 TraesCS1D01G365200 chr7A 86.640 509 47 10 1188 1683 692056346 692055846 9.250000e-151 544.0
7 TraesCS1D01G365200 chr7A 84.200 519 58 13 1184 1683 712307255 712307768 2.050000e-132 483.0
8 TraesCS1D01G365200 chr7A 80.866 439 65 15 996 1420 692130950 692130517 1.010000e-85 327.0
9 TraesCS1D01G365200 chr7A 88.835 206 17 4 1481 1683 116019374 116019576 8.120000e-62 248.0
10 TraesCS1D01G365200 chr7A 88.983 118 12 1 995 1112 692056503 692056387 1.100000e-30 145.0
11 TraesCS1D01G365200 chr7A 77.174 276 37 17 1799 2070 241735832 241735579 1.830000e-28 137.0
12 TraesCS1D01G365200 chr7B 85.890 489 55 9 1197 1683 679683949 679683473 3.370000e-140 508.0
13 TraesCS1D01G365200 chr7B 84.980 506 54 13 1196 1683 713099666 713100167 9.450000e-136 494.0
14 TraesCS1D01G365200 chr7B 80.920 435 64 15 1001 1421 679713350 679712921 3.650000e-85 326.0
15 TraesCS1D01G365200 chr7B 88.797 241 25 1 1186 1424 70243723 70243963 1.030000e-75 294.0
16 TraesCS1D01G365200 chr7B 76.905 433 61 21 2399 2796 70244771 70245199 3.830000e-50 209.0
17 TraesCS1D01G365200 chr7B 89.855 138 14 0 2410 2547 679682716 679682579 1.080000e-40 178.0
18 TraesCS1D01G365200 chr7B 82.812 192 30 1 2605 2796 69914348 69914536 6.510000e-38 169.0
19 TraesCS1D01G365200 chr7B 82.812 192 30 1 2605 2796 70070732 70070920 6.510000e-38 169.0
20 TraesCS1D01G365200 chr7B 82.292 192 31 1 2605 2796 69851076 69851264 3.030000e-36 163.0
21 TraesCS1D01G365200 chr7B 81.771 192 32 1 2605 2796 69994233 69994421 1.410000e-34 158.0
22 TraesCS1D01G365200 chr7B 89.000 100 10 1 995 1093 679684117 679684018 5.140000e-24 122.0
23 TraesCS1D01G365200 chr7B 89.362 47 5 0 1904 1950 643186270 643186316 4.090000e-05 60.2
24 TraesCS1D01G365200 chr7D 85.375 506 52 13 1196 1683 618679794 618680295 4.370000e-139 505.0
25 TraesCS1D01G365200 chr7D 88.835 206 17 4 1481 1683 110891168 110891370 8.120000e-62 248.0
26 TraesCS1D01G365200 chr7D 81.373 306 41 12 1 300 130766055 130765760 6.320000e-58 235.0
27 TraesCS1D01G365200 chr7D 81.818 231 36 6 72 298 223819882 223819654 4.990000e-44 189.0
28 TraesCS1D01G365200 chr7D 76.812 276 36 18 1799 2070 15899728 15899477 3.070000e-26 130.0
29 TraesCS1D01G365200 chrUn 90.789 228 21 0 1197 1424 16612578 16612805 4.750000e-79 305.0
30 TraesCS1D01G365200 chrUn 84.884 258 28 7 1431 1683 266170709 266170458 2.260000e-62 250.0
31 TraesCS1D01G365200 chrUn 86.452 155 18 3 2414 2566 266169925 266169772 2.340000e-37 167.0
32 TraesCS1D01G365200 chrUn 86.452 155 18 3 2414 2566 379210447 379210294 2.340000e-37 167.0
33 TraesCS1D01G365200 chrUn 76.812 276 38 16 1799 2070 199237073 199237326 8.540000e-27 132.0
34 TraesCS1D01G365200 chr2D 84.884 258 28 7 1431 1683 15229219 15229470 2.260000e-62 250.0
35 TraesCS1D01G365200 chr2D 84.942 259 26 10 1431 1683 15264930 15265181 2.260000e-62 250.0
36 TraesCS1D01G365200 chr2D 76.712 438 58 22 2399 2796 19848139 19847706 1.780000e-48 204.0
37 TraesCS1D01G365200 chr2D 88.489 139 15 1 2414 2551 15230003 15230141 2.340000e-37 167.0
38 TraesCS1D01G365200 chr2D 88.489 139 15 1 2414 2551 15250806 15250944 2.340000e-37 167.0
39 TraesCS1D01G365200 chr2D 76.976 291 54 13 15 298 39204633 39204917 1.820000e-33 154.0
40 TraesCS1D01G365200 chr2A 76.430 437 60 21 2399 2796 20366615 20367047 2.980000e-46 196.0
41 TraesCS1D01G365200 chr2B 79.514 288 45 11 18 298 699215039 699214759 3.860000e-45 193.0
42 TraesCS1D01G365200 chr2B 78.125 288 49 11 18 298 768620073 768619793 1.810000e-38 171.0
43 TraesCS1D01G365200 chr3B 78.819 288 48 10 18 298 782683672 782683391 8.360000e-42 182.0
44 TraesCS1D01G365200 chr3B 76.000 275 41 17 1799 2070 139478371 139478623 6.650000e-23 119.0
45 TraesCS1D01G365200 chr4B 78.700 277 52 6 25 298 656282285 656282013 1.080000e-40 178.0
46 TraesCS1D01G365200 chr4D 80.252 238 39 6 72 303 425144148 425143913 5.030000e-39 172.0
47 TraesCS1D01G365200 chr6B 82.812 192 30 1 2605 2796 548950128 548950316 6.510000e-38 169.0
48 TraesCS1D01G365200 chr6B 82.812 192 30 1 2605 2796 549030641 549030829 6.510000e-38 169.0
49 TraesCS1D01G365200 chr6B 76.812 276 36 15 1799 2070 603881800 603882051 3.070000e-26 130.0
50 TraesCS1D01G365200 chr5B 77.778 288 51 10 18 298 510514038 510513757 8.420000e-37 165.0
51 TraesCS1D01G365200 chr3A 76.812 276 38 16 1799 2070 745434476 745434223 8.540000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G365200 chr1D 445639930 445643716 3786 True 6994.000000 6994 100.000000 1 3787 1 chr1D.!!$R1 3786
1 TraesCS1D01G365200 chr1A 541892947 541896231 3284 True 2466.000000 4004 94.563500 446 3787 2 chr1A.!!$R1 3341
2 TraesCS1D01G365200 chr1B 608991809 608996758 4949 True 1378.266667 3452 93.004000 652 3768 3 chr1B.!!$R1 3116
3 TraesCS1D01G365200 chr7A 712307255 712307768 513 False 483.000000 483 84.200000 1184 1683 1 chr7A.!!$F2 499
4 TraesCS1D01G365200 chr7A 692055846 692056503 657 True 344.500000 544 87.811500 995 1683 2 chr7A.!!$R3 688
5 TraesCS1D01G365200 chr7B 713099666 713100167 501 False 494.000000 494 84.980000 1196 1683 1 chr7B.!!$F6 487
6 TraesCS1D01G365200 chr7B 679682579 679684117 1538 True 269.333333 508 88.248333 995 2547 3 chr7B.!!$R2 1552
7 TraesCS1D01G365200 chr7B 70243723 70245199 1476 False 251.500000 294 82.851000 1186 2796 2 chr7B.!!$F7 1610
8 TraesCS1D01G365200 chr7D 618679794 618680295 501 False 505.000000 505 85.375000 1196 1683 1 chr7D.!!$F2 487
9 TraesCS1D01G365200 chrUn 266169772 266170709 937 True 208.500000 250 85.668000 1431 2566 2 chrUn.!!$R2 1135
10 TraesCS1D01G365200 chr2D 15229219 15230141 922 False 208.500000 250 86.686500 1431 2551 2 chr2D.!!$F4 1120

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 924 0.033503 AATCACCCCGAACCCCATTC 60.034 55.0 0.00 0.00 0.0 2.67 F
932 937 0.268566 CCCATTCCCCATTCCCCATT 59.731 55.0 0.00 0.00 0.0 3.16 F
2141 2565 0.030195 TGTGATGCCTAGGGATGGGA 60.030 55.0 22.03 1.11 0.0 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 2388 0.676466 CTGGCTACACGGGATGCAAA 60.676 55.000 0.0 0.0 0.00 3.68 R
2436 2936 0.744874 GCATGTACTCCACGCTCCTA 59.255 55.000 0.0 0.0 0.00 2.94 R
3459 4050 4.637483 TGTGAAAAGAGCTTGGACAAAG 57.363 40.909 0.0 0.0 39.07 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.757355 CGGCCATGGCTGGGGAAA 62.757 66.667 34.36 0.00 43.36 3.13
18 19 2.761213 GGCCATGGCTGGGGAAAG 60.761 66.667 34.70 0.00 43.36 2.62
19 20 2.360191 GCCATGGCTGGGGAAAGA 59.640 61.111 29.98 0.00 43.36 2.52
20 21 2.054453 GCCATGGCTGGGGAAAGAC 61.054 63.158 29.98 0.00 43.36 3.01
21 22 1.383799 CCATGGCTGGGGAAAGACA 59.616 57.895 0.00 0.00 40.25 3.41
23 24 1.396653 CATGGCTGGGGAAAGACATC 58.603 55.000 0.00 0.00 42.54 3.06
24 25 1.002069 ATGGCTGGGGAAAGACATCA 58.998 50.000 0.00 0.00 42.54 3.07
25 26 0.329261 TGGCTGGGGAAAGACATCAG 59.671 55.000 0.00 0.00 27.10 2.90
26 27 0.394899 GGCTGGGGAAAGACATCAGG 60.395 60.000 0.00 0.00 0.00 3.86
27 28 0.394899 GCTGGGGAAAGACATCAGGG 60.395 60.000 0.00 0.00 0.00 4.45
28 29 1.289160 CTGGGGAAAGACATCAGGGA 58.711 55.000 0.00 0.00 0.00 4.20
29 30 1.635487 CTGGGGAAAGACATCAGGGAA 59.365 52.381 0.00 0.00 0.00 3.97
30 31 1.635487 TGGGGAAAGACATCAGGGAAG 59.365 52.381 0.00 0.00 0.00 3.46
31 32 1.916181 GGGGAAAGACATCAGGGAAGA 59.084 52.381 0.00 0.00 0.00 2.87
32 33 2.308866 GGGGAAAGACATCAGGGAAGAA 59.691 50.000 0.00 0.00 0.00 2.52
33 34 3.615155 GGGAAAGACATCAGGGAAGAAG 58.385 50.000 0.00 0.00 0.00 2.85
34 35 3.264450 GGGAAAGACATCAGGGAAGAAGA 59.736 47.826 0.00 0.00 0.00 2.87
35 36 4.080072 GGGAAAGACATCAGGGAAGAAGAT 60.080 45.833 0.00 0.00 0.00 2.40
36 37 4.880696 GGAAAGACATCAGGGAAGAAGATG 59.119 45.833 0.00 0.00 43.56 2.90
37 38 4.500499 AAGACATCAGGGAAGAAGATGG 57.500 45.455 0.00 0.00 42.55 3.51
38 39 3.729108 AGACATCAGGGAAGAAGATGGA 58.271 45.455 0.00 0.00 42.55 3.41
39 40 3.710677 AGACATCAGGGAAGAAGATGGAG 59.289 47.826 0.00 0.00 42.55 3.86
40 41 3.708631 GACATCAGGGAAGAAGATGGAGA 59.291 47.826 0.00 0.00 42.55 3.71
41 42 4.107072 ACATCAGGGAAGAAGATGGAGAA 58.893 43.478 0.00 0.00 42.55 2.87
42 43 4.537688 ACATCAGGGAAGAAGATGGAGAAA 59.462 41.667 0.00 0.00 42.55 2.52
43 44 5.014544 ACATCAGGGAAGAAGATGGAGAAAA 59.985 40.000 0.00 0.00 42.55 2.29
44 45 5.171339 TCAGGGAAGAAGATGGAGAAAAG 57.829 43.478 0.00 0.00 0.00 2.27
45 46 4.846367 TCAGGGAAGAAGATGGAGAAAAGA 59.154 41.667 0.00 0.00 0.00 2.52
46 47 5.310594 TCAGGGAAGAAGATGGAGAAAAGAA 59.689 40.000 0.00 0.00 0.00 2.52
47 48 6.006449 CAGGGAAGAAGATGGAGAAAAGAAA 58.994 40.000 0.00 0.00 0.00 2.52
48 49 6.491403 CAGGGAAGAAGATGGAGAAAAGAAAA 59.509 38.462 0.00 0.00 0.00 2.29
49 50 7.014615 CAGGGAAGAAGATGGAGAAAAGAAAAA 59.985 37.037 0.00 0.00 0.00 1.94
50 51 7.732140 AGGGAAGAAGATGGAGAAAAGAAAAAT 59.268 33.333 0.00 0.00 0.00 1.82
51 52 9.025041 GGGAAGAAGATGGAGAAAAGAAAAATA 57.975 33.333 0.00 0.00 0.00 1.40
55 56 9.029368 AGAAGATGGAGAAAAGAAAAATAAGGG 57.971 33.333 0.00 0.00 0.00 3.95
56 57 8.956446 AAGATGGAGAAAAGAAAAATAAGGGA 57.044 30.769 0.00 0.00 0.00 4.20
57 58 8.586879 AGATGGAGAAAAGAAAAATAAGGGAG 57.413 34.615 0.00 0.00 0.00 4.30
58 59 8.394040 AGATGGAGAAAAGAAAAATAAGGGAGA 58.606 33.333 0.00 0.00 0.00 3.71
59 60 8.586879 ATGGAGAAAAGAAAAATAAGGGAGAG 57.413 34.615 0.00 0.00 0.00 3.20
60 61 7.755618 TGGAGAAAAGAAAAATAAGGGAGAGA 58.244 34.615 0.00 0.00 0.00 3.10
61 62 7.885399 TGGAGAAAAGAAAAATAAGGGAGAGAG 59.115 37.037 0.00 0.00 0.00 3.20
62 63 8.103935 GGAGAAAAGAAAAATAAGGGAGAGAGA 58.896 37.037 0.00 0.00 0.00 3.10
63 64 9.161629 GAGAAAAGAAAAATAAGGGAGAGAGAG 57.838 37.037 0.00 0.00 0.00 3.20
64 65 8.885346 AGAAAAGAAAAATAAGGGAGAGAGAGA 58.115 33.333 0.00 0.00 0.00 3.10
65 66 9.161629 GAAAAGAAAAATAAGGGAGAGAGAGAG 57.838 37.037 0.00 0.00 0.00 3.20
66 67 7.806680 AAGAAAAATAAGGGAGAGAGAGAGT 57.193 36.000 0.00 0.00 0.00 3.24
67 68 7.181569 AGAAAAATAAGGGAGAGAGAGAGTG 57.818 40.000 0.00 0.00 0.00 3.51
68 69 5.948742 AAAATAAGGGAGAGAGAGAGTGG 57.051 43.478 0.00 0.00 0.00 4.00
69 70 3.611025 ATAAGGGAGAGAGAGAGTGGG 57.389 52.381 0.00 0.00 0.00 4.61
70 71 0.325203 AAGGGAGAGAGAGAGTGGGC 60.325 60.000 0.00 0.00 0.00 5.36
71 72 2.124693 GGGAGAGAGAGAGTGGGCG 61.125 68.421 0.00 0.00 0.00 6.13
72 73 2.781158 GGAGAGAGAGAGTGGGCGC 61.781 68.421 0.00 0.00 0.00 6.53
73 74 1.752694 GAGAGAGAGAGTGGGCGCT 60.753 63.158 7.64 0.00 0.00 5.92
74 75 1.304879 AGAGAGAGAGTGGGCGCTT 60.305 57.895 7.64 0.00 0.00 4.68
75 76 0.033991 AGAGAGAGAGTGGGCGCTTA 60.034 55.000 7.64 0.00 0.00 3.09
76 77 0.101579 GAGAGAGAGTGGGCGCTTAC 59.898 60.000 7.64 6.93 0.00 2.34
77 78 0.612174 AGAGAGAGTGGGCGCTTACA 60.612 55.000 7.64 0.91 0.00 2.41
78 79 0.461961 GAGAGAGTGGGCGCTTACAT 59.538 55.000 7.64 0.00 0.00 2.29
79 80 1.681793 GAGAGAGTGGGCGCTTACATA 59.318 52.381 7.64 0.00 0.00 2.29
80 81 2.297597 GAGAGAGTGGGCGCTTACATAT 59.702 50.000 7.64 0.00 0.00 1.78
81 82 2.036475 AGAGAGTGGGCGCTTACATATG 59.964 50.000 7.64 0.00 0.00 1.78
82 83 1.070758 AGAGTGGGCGCTTACATATGG 59.929 52.381 7.64 0.00 0.00 2.74
83 84 0.108585 AGTGGGCGCTTACATATGGG 59.891 55.000 7.64 0.00 0.00 4.00
84 85 0.107831 GTGGGCGCTTACATATGGGA 59.892 55.000 7.64 0.00 0.00 4.37
85 86 0.107831 TGGGCGCTTACATATGGGAC 59.892 55.000 7.64 0.00 0.00 4.46
86 87 0.605589 GGGCGCTTACATATGGGACC 60.606 60.000 7.64 0.00 37.14 4.46
87 88 0.605589 GGCGCTTACATATGGGACCC 60.606 60.000 7.64 2.45 0.00 4.46
88 89 0.107831 GCGCTTACATATGGGACCCA 59.892 55.000 17.73 17.73 38.19 4.51
89 90 1.271379 GCGCTTACATATGGGACCCAT 60.271 52.381 29.02 29.02 46.99 4.00
102 103 4.963373 TGGGACCCATATGTACATTAACG 58.037 43.478 14.77 2.62 0.00 3.18
103 104 4.202377 TGGGACCCATATGTACATTAACGG 60.202 45.833 14.77 10.92 0.00 4.44
104 105 4.202388 GGGACCCATATGTACATTAACGGT 60.202 45.833 14.77 13.92 0.00 4.83
105 106 5.370679 GGACCCATATGTACATTAACGGTT 58.629 41.667 14.77 0.00 0.00 4.44
106 107 6.464180 GGGACCCATATGTACATTAACGGTTA 60.464 42.308 14.77 0.00 0.00 2.85
107 108 6.991531 GGACCCATATGTACATTAACGGTTAA 59.008 38.462 14.77 15.07 0.00 2.01
108 109 7.498570 GGACCCATATGTACATTAACGGTTAAA 59.501 37.037 14.77 1.34 0.00 1.52
109 110 8.212317 ACCCATATGTACATTAACGGTTAAAC 57.788 34.615 14.77 11.16 0.00 2.01
110 111 7.828223 ACCCATATGTACATTAACGGTTAAACA 59.172 33.333 14.77 15.76 0.00 2.83
111 112 8.675504 CCCATATGTACATTAACGGTTAAACAA 58.324 33.333 14.77 8.53 0.00 2.83
116 117 7.983307 TGTACATTAACGGTTAAACAAACAGT 58.017 30.769 16.49 9.38 46.68 3.55
117 118 8.121708 TGTACATTAACGGTTAAACAAACAGTC 58.878 33.333 16.49 3.33 44.39 3.51
118 119 7.086230 ACATTAACGGTTAAACAAACAGTCA 57.914 32.000 16.49 0.00 44.39 3.41
119 120 7.536855 ACATTAACGGTTAAACAAACAGTCAA 58.463 30.769 16.49 0.00 44.39 3.18
120 121 8.192110 ACATTAACGGTTAAACAAACAGTCAAT 58.808 29.630 16.49 0.00 44.39 2.57
121 122 9.666626 CATTAACGGTTAAACAAACAGTCAATA 57.333 29.630 16.49 0.00 44.39 1.90
124 125 7.974243 ACGGTTAAACAAACAGTCAATAAAC 57.026 32.000 0.00 0.00 41.91 2.01
125 126 6.687958 ACGGTTAAACAAACAGTCAATAAACG 59.312 34.615 0.00 0.00 41.91 3.60
126 127 6.141053 CGGTTAAACAAACAGTCAATAAACGG 59.859 38.462 0.00 0.00 40.08 4.44
127 128 6.974048 GGTTAAACAAACAGTCAATAAACGGT 59.026 34.615 0.00 0.00 40.08 4.83
128 129 7.488792 GGTTAAACAAACAGTCAATAAACGGTT 59.511 33.333 0.00 0.00 40.08 4.44
129 130 8.862074 GTTAAACAAACAGTCAATAAACGGTTT 58.138 29.630 11.33 11.33 44.66 3.27
142 143 1.612676 ACGGTTTGTTTAGAAGGGCC 58.387 50.000 0.00 0.00 0.00 5.80
143 144 0.885879 CGGTTTGTTTAGAAGGGCCC 59.114 55.000 16.46 16.46 0.00 5.80
144 145 1.820090 CGGTTTGTTTAGAAGGGCCCA 60.820 52.381 27.56 0.00 0.00 5.36
145 146 2.321719 GGTTTGTTTAGAAGGGCCCAA 58.678 47.619 27.56 6.31 0.00 4.12
146 147 2.036733 GGTTTGTTTAGAAGGGCCCAAC 59.963 50.000 27.56 19.56 0.00 3.77
147 148 2.696187 GTTTGTTTAGAAGGGCCCAACA 59.304 45.455 27.56 22.12 0.00 3.33
148 149 2.990740 TGTTTAGAAGGGCCCAACAT 57.009 45.000 27.56 9.47 0.00 2.71
149 150 2.524306 TGTTTAGAAGGGCCCAACATG 58.476 47.619 27.56 0.00 0.00 3.21
150 151 2.158385 TGTTTAGAAGGGCCCAACATGT 60.158 45.455 27.56 8.21 0.00 3.21
151 152 2.492088 GTTTAGAAGGGCCCAACATGTC 59.508 50.000 27.56 10.88 0.00 3.06
152 153 1.367346 TAGAAGGGCCCAACATGTCA 58.633 50.000 27.56 0.00 0.00 3.58
153 154 0.706433 AGAAGGGCCCAACATGTCAT 59.294 50.000 27.56 0.00 0.00 3.06
154 155 1.922447 AGAAGGGCCCAACATGTCATA 59.078 47.619 27.56 0.00 0.00 2.15
155 156 2.311542 AGAAGGGCCCAACATGTCATAA 59.688 45.455 27.56 0.00 0.00 1.90
156 157 2.917713 AGGGCCCAACATGTCATAAA 57.082 45.000 27.56 0.00 0.00 1.40
157 158 2.456577 AGGGCCCAACATGTCATAAAC 58.543 47.619 27.56 0.00 0.00 2.01
158 159 1.480545 GGGCCCAACATGTCATAAACC 59.519 52.381 19.95 0.00 0.00 3.27
159 160 1.134175 GGCCCAACATGTCATAAACCG 59.866 52.381 0.00 0.00 0.00 4.44
160 161 1.134175 GCCCAACATGTCATAAACCGG 59.866 52.381 0.00 0.00 0.00 5.28
161 162 2.717390 CCCAACATGTCATAAACCGGA 58.283 47.619 9.46 0.00 0.00 5.14
162 163 3.287222 CCCAACATGTCATAAACCGGAT 58.713 45.455 9.46 0.00 0.00 4.18
163 164 3.699038 CCCAACATGTCATAAACCGGATT 59.301 43.478 9.46 4.89 0.00 3.01
164 165 4.884744 CCCAACATGTCATAAACCGGATTA 59.115 41.667 9.46 7.80 0.00 1.75
165 166 5.358442 CCCAACATGTCATAAACCGGATTAA 59.642 40.000 9.46 0.00 0.00 1.40
166 167 6.040391 CCCAACATGTCATAAACCGGATTAAT 59.960 38.462 9.46 0.00 0.00 1.40
167 168 7.417342 CCCAACATGTCATAAACCGGATTAATT 60.417 37.037 9.46 0.00 0.00 1.40
168 169 7.647715 CCAACATGTCATAAACCGGATTAATTC 59.352 37.037 9.46 2.45 0.00 2.17
169 170 8.405531 CAACATGTCATAAACCGGATTAATTCT 58.594 33.333 9.46 0.00 0.00 2.40
170 171 9.621629 AACATGTCATAAACCGGATTAATTCTA 57.378 29.630 9.46 0.00 0.00 2.10
171 172 9.621629 ACATGTCATAAACCGGATTAATTCTAA 57.378 29.630 9.46 0.00 0.00 2.10
176 177 9.959749 TCATAAACCGGATTAATTCTAAATTGC 57.040 29.630 9.46 0.00 0.00 3.56
177 178 9.743057 CATAAACCGGATTAATTCTAAATTGCA 57.257 29.630 9.46 0.00 0.00 4.08
179 180 8.647143 AAACCGGATTAATTCTAAATTGCATG 57.353 30.769 9.46 0.00 0.00 4.06
180 181 7.581213 ACCGGATTAATTCTAAATTGCATGA 57.419 32.000 9.46 0.00 0.00 3.07
181 182 8.181904 ACCGGATTAATTCTAAATTGCATGAT 57.818 30.769 9.46 0.00 0.00 2.45
182 183 8.299570 ACCGGATTAATTCTAAATTGCATGATC 58.700 33.333 9.46 0.00 0.00 2.92
183 184 8.298854 CCGGATTAATTCTAAATTGCATGATCA 58.701 33.333 0.00 0.00 0.00 2.92
184 185 9.850628 CGGATTAATTCTAAATTGCATGATCAT 57.149 29.630 1.18 1.18 0.00 2.45
189 190 8.671384 AATTCTAAATTGCATGATCATTTGGG 57.329 30.769 5.16 0.00 0.00 4.12
190 191 6.795144 TCTAAATTGCATGATCATTTGGGT 57.205 33.333 5.16 0.00 0.00 4.51
191 192 7.185318 TCTAAATTGCATGATCATTTGGGTT 57.815 32.000 5.16 1.02 0.00 4.11
192 193 7.622713 TCTAAATTGCATGATCATTTGGGTTT 58.377 30.769 5.16 6.74 0.00 3.27
193 194 8.102047 TCTAAATTGCATGATCATTTGGGTTTT 58.898 29.630 5.16 4.72 0.00 2.43
194 195 7.527568 AAATTGCATGATCATTTGGGTTTTT 57.472 28.000 5.16 0.00 0.00 1.94
246 247 8.869109 AGGTTTTTGAAATATCATGAAAGGTGA 58.131 29.630 0.00 0.00 34.96 4.02
247 248 9.657419 GGTTTTTGAAATATCATGAAAGGTGAT 57.343 29.630 0.00 0.00 39.50 3.06
277 278 8.918202 TTTTATTGACCTAGCCTATAATGTGG 57.082 34.615 0.00 0.00 0.00 4.17
278 279 7.626999 TTATTGACCTAGCCTATAATGTGGT 57.373 36.000 0.00 0.00 0.00 4.16
279 280 8.730093 TTATTGACCTAGCCTATAATGTGGTA 57.270 34.615 0.00 0.00 0.00 3.25
280 281 6.665992 TTGACCTAGCCTATAATGTGGTAG 57.334 41.667 0.00 0.00 0.00 3.18
281 282 5.712752 TGACCTAGCCTATAATGTGGTAGT 58.287 41.667 0.00 0.00 0.00 2.73
282 283 6.141083 TGACCTAGCCTATAATGTGGTAGTT 58.859 40.000 0.00 0.00 0.00 2.24
283 284 6.614087 TGACCTAGCCTATAATGTGGTAGTTT 59.386 38.462 0.00 0.00 0.00 2.66
284 285 7.126726 TGACCTAGCCTATAATGTGGTAGTTTT 59.873 37.037 0.00 0.00 0.00 2.43
285 286 7.868974 ACCTAGCCTATAATGTGGTAGTTTTT 58.131 34.615 0.00 0.00 0.00 1.94
308 309 7.766219 TTTGCTATATACTCGAGAAAACACC 57.234 36.000 21.68 3.03 0.00 4.16
309 310 5.516996 TGCTATATACTCGAGAAAACACCG 58.483 41.667 21.68 1.45 0.00 4.94
310 311 5.297527 TGCTATATACTCGAGAAAACACCGA 59.702 40.000 21.68 0.00 0.00 4.69
313 314 2.062779 CTCGAGAAAACACCGAGCG 58.937 57.895 6.58 0.00 42.34 5.03
314 315 1.945776 CTCGAGAAAACACCGAGCGC 61.946 60.000 6.58 0.00 42.34 5.92
315 316 2.307309 CGAGAAAACACCGAGCGCA 61.307 57.895 11.47 0.00 0.00 6.09
316 317 1.827315 CGAGAAAACACCGAGCGCAA 61.827 55.000 11.47 0.00 0.00 4.85
317 318 0.306533 GAGAAAACACCGAGCGCAAA 59.693 50.000 11.47 0.00 0.00 3.68
318 319 0.736053 AGAAAACACCGAGCGCAAAA 59.264 45.000 11.47 0.00 0.00 2.44
319 320 1.133407 AGAAAACACCGAGCGCAAAAA 59.867 42.857 11.47 0.00 0.00 1.94
356 357 9.697250 TGATTATGTATAATTATTTTAGCGCGC 57.303 29.630 26.66 26.66 33.37 6.86
357 358 9.155053 GATTATGTATAATTATTTTAGCGCGCC 57.845 33.333 30.33 10.31 33.37 6.53
358 359 4.948588 TGTATAATTATTTTAGCGCGCCG 58.051 39.130 30.33 0.00 0.00 6.46
377 378 3.035503 GCAACCCCGCGCTTTTTG 61.036 61.111 5.56 4.68 0.00 2.44
378 379 2.355718 CAACCCCGCGCTTTTTGG 60.356 61.111 5.56 0.00 0.00 3.28
379 380 2.519780 AACCCCGCGCTTTTTGGA 60.520 55.556 5.56 0.00 0.00 3.53
380 381 2.561037 AACCCCGCGCTTTTTGGAG 61.561 57.895 5.56 0.00 0.00 3.86
381 382 2.671619 CCCCGCGCTTTTTGGAGA 60.672 61.111 5.56 0.00 0.00 3.71
382 383 2.046285 CCCCGCGCTTTTTGGAGAT 61.046 57.895 5.56 0.00 0.00 2.75
383 384 1.137404 CCCGCGCTTTTTGGAGATG 59.863 57.895 5.56 0.00 0.00 2.90
384 385 1.514873 CCGCGCTTTTTGGAGATGC 60.515 57.895 5.56 0.00 0.00 3.91
385 386 1.503542 CGCGCTTTTTGGAGATGCT 59.496 52.632 5.56 0.00 0.00 3.79
386 387 0.522076 CGCGCTTTTTGGAGATGCTC 60.522 55.000 5.56 0.00 0.00 4.26
387 388 0.807496 GCGCTTTTTGGAGATGCTCT 59.193 50.000 0.00 0.00 0.00 4.09
388 389 1.200948 GCGCTTTTTGGAGATGCTCTT 59.799 47.619 0.00 0.00 0.00 2.85
389 390 2.420022 GCGCTTTTTGGAGATGCTCTTA 59.580 45.455 0.00 0.00 0.00 2.10
390 391 3.119849 GCGCTTTTTGGAGATGCTCTTAA 60.120 43.478 0.00 0.00 0.00 1.85
391 392 4.656041 CGCTTTTTGGAGATGCTCTTAAG 58.344 43.478 0.00 0.00 0.00 1.85
408 409 6.683974 TCTTAAGCAATTGGTTAGAGATGC 57.316 37.500 24.55 0.64 38.92 3.91
409 410 6.418101 TCTTAAGCAATTGGTTAGAGATGCT 58.582 36.000 24.55 3.01 45.32 3.79
410 411 6.540189 TCTTAAGCAATTGGTTAGAGATGCTC 59.460 38.462 24.55 0.00 42.82 4.26
411 412 4.500499 AGCAATTGGTTAGAGATGCTCT 57.500 40.909 3.82 2.22 39.80 4.09
412 413 4.853007 AGCAATTGGTTAGAGATGCTCTT 58.147 39.130 3.82 0.00 39.80 2.85
413 414 5.994250 AGCAATTGGTTAGAGATGCTCTTA 58.006 37.500 3.82 0.00 39.80 2.10
414 415 5.819901 AGCAATTGGTTAGAGATGCTCTTAC 59.180 40.000 3.82 3.84 39.80 2.34
415 416 5.277058 GCAATTGGTTAGAGATGCTCTTACG 60.277 44.000 7.72 0.00 39.93 3.18
416 417 5.599999 ATTGGTTAGAGATGCTCTTACGT 57.400 39.130 1.88 0.00 39.93 3.57
417 418 5.401531 TTGGTTAGAGATGCTCTTACGTT 57.598 39.130 1.88 0.00 39.93 3.99
418 419 4.744570 TGGTTAGAGATGCTCTTACGTTG 58.255 43.478 1.88 0.00 39.93 4.10
419 420 4.219944 TGGTTAGAGATGCTCTTACGTTGT 59.780 41.667 1.88 0.00 39.93 3.32
420 421 5.169295 GGTTAGAGATGCTCTTACGTTGTT 58.831 41.667 1.88 0.00 39.93 2.83
421 422 5.062308 GGTTAGAGATGCTCTTACGTTGTTG 59.938 44.000 1.88 0.00 39.93 3.33
422 423 3.589988 AGAGATGCTCTTACGTTGTTGG 58.410 45.455 0.00 0.00 37.60 3.77
423 424 2.673368 GAGATGCTCTTACGTTGTTGGG 59.327 50.000 0.00 0.00 0.00 4.12
424 425 2.301870 AGATGCTCTTACGTTGTTGGGA 59.698 45.455 0.00 0.00 0.00 4.37
425 426 2.163818 TGCTCTTACGTTGTTGGGAG 57.836 50.000 0.00 0.00 0.00 4.30
426 427 1.689813 TGCTCTTACGTTGTTGGGAGA 59.310 47.619 0.00 0.00 0.00 3.71
427 428 2.288825 TGCTCTTACGTTGTTGGGAGAG 60.289 50.000 0.00 0.00 35.05 3.20
428 429 2.338500 CTCTTACGTTGTTGGGAGAGC 58.662 52.381 0.00 0.00 0.00 4.09
429 430 1.968493 TCTTACGTTGTTGGGAGAGCT 59.032 47.619 0.00 0.00 0.00 4.09
430 431 2.029290 TCTTACGTTGTTGGGAGAGCTC 60.029 50.000 5.27 5.27 0.00 4.09
431 432 0.242825 TACGTTGTTGGGAGAGCTCG 59.757 55.000 8.37 0.00 0.00 5.03
432 433 1.006102 CGTTGTTGGGAGAGCTCGT 60.006 57.895 8.37 0.00 0.00 4.18
433 434 1.284982 CGTTGTTGGGAGAGCTCGTG 61.285 60.000 8.37 0.00 0.00 4.35
434 435 1.301716 TTGTTGGGAGAGCTCGTGC 60.302 57.895 8.37 0.07 40.05 5.34
435 436 2.038814 TTGTTGGGAGAGCTCGTGCA 62.039 55.000 12.58 0.42 42.74 4.57
436 437 1.301716 GTTGGGAGAGCTCGTGCAA 60.302 57.895 12.58 0.00 42.74 4.08
437 438 1.301716 TTGGGAGAGCTCGTGCAAC 60.302 57.895 12.58 5.48 42.74 4.17
458 459 4.399978 ACGTACGTGCATTTTTAGCAATC 58.600 39.130 22.14 0.00 44.64 2.67
471 472 2.745884 CAATCCCTTGCCGTCGCA 60.746 61.111 0.00 0.00 45.49 5.10
475 476 2.329539 ATCCCTTGCCGTCGCATGAT 62.330 55.000 0.00 0.00 46.67 2.45
477 478 1.224069 CCCTTGCCGTCGCATGATAG 61.224 60.000 0.00 0.00 46.67 2.08
482 483 1.006314 GCCGTCGCATGATAGAGCTC 61.006 60.000 5.27 5.27 34.03 4.09
483 484 0.727457 CCGTCGCATGATAGAGCTCG 60.727 60.000 8.37 0.00 0.00 5.03
484 485 0.040870 CGTCGCATGATAGAGCTCGT 60.041 55.000 8.37 0.50 0.00 4.18
485 486 1.403493 GTCGCATGATAGAGCTCGTG 58.597 55.000 8.37 5.05 35.64 4.35
493 494 3.664107 TGATAGAGCTCGTGCAAACTTT 58.336 40.909 12.58 3.59 42.74 2.66
541 546 1.941325 CCGGGAGCTTGAATACACTC 58.059 55.000 0.00 0.00 0.00 3.51
579 584 0.742281 CCAGTCAGGATCGCAGGTTG 60.742 60.000 0.00 0.00 41.22 3.77
583 588 1.078918 CAGGATCGCAGGTTGCTCA 60.079 57.895 0.00 0.00 42.25 4.26
633 638 3.672767 TTGAACGGAGGAAGAGTAACC 57.327 47.619 0.00 0.00 0.00 2.85
900 905 3.646715 CCCGGCCTCCCTGTTTCA 61.647 66.667 0.00 0.00 0.00 2.69
916 921 1.427895 TTCAATCACCCCGAACCCCA 61.428 55.000 0.00 0.00 0.00 4.96
917 922 1.211567 TCAATCACCCCGAACCCCAT 61.212 55.000 0.00 0.00 0.00 4.00
918 923 0.324275 CAATCACCCCGAACCCCATT 60.324 55.000 0.00 0.00 0.00 3.16
919 924 0.033503 AATCACCCCGAACCCCATTC 60.034 55.000 0.00 0.00 0.00 2.67
920 925 1.933307 ATCACCCCGAACCCCATTCC 61.933 60.000 0.00 0.00 33.26 3.01
921 926 3.344176 ACCCCGAACCCCATTCCC 61.344 66.667 0.00 0.00 33.26 3.97
922 927 4.137615 CCCCGAACCCCATTCCCC 62.138 72.222 0.00 0.00 33.26 4.81
923 928 3.343326 CCCGAACCCCATTCCCCA 61.343 66.667 0.00 0.00 33.26 4.96
924 929 2.700185 CCCGAACCCCATTCCCCAT 61.700 63.158 0.00 0.00 33.26 4.00
925 930 1.309688 CCGAACCCCATTCCCCATT 59.690 57.895 0.00 0.00 33.26 3.16
926 931 0.755327 CCGAACCCCATTCCCCATTC 60.755 60.000 0.00 0.00 33.26 2.67
927 932 0.755327 CGAACCCCATTCCCCATTCC 60.755 60.000 0.00 0.00 33.26 3.01
928 933 0.398522 GAACCCCATTCCCCATTCCC 60.399 60.000 0.00 0.00 0.00 3.97
929 934 1.897037 AACCCCATTCCCCATTCCCC 61.897 60.000 0.00 0.00 0.00 4.81
930 935 2.331833 CCCCATTCCCCATTCCCCA 61.332 63.158 0.00 0.00 0.00 4.96
931 936 1.677950 CCCCATTCCCCATTCCCCAT 61.678 60.000 0.00 0.00 0.00 4.00
932 937 0.268566 CCCATTCCCCATTCCCCATT 59.731 55.000 0.00 0.00 0.00 3.16
933 938 1.720781 CCATTCCCCATTCCCCATTC 58.279 55.000 0.00 0.00 0.00 2.67
934 939 1.720781 CATTCCCCATTCCCCATTCC 58.279 55.000 0.00 0.00 0.00 3.01
935 940 0.567687 ATTCCCCATTCCCCATTCCC 59.432 55.000 0.00 0.00 0.00 3.97
936 941 1.598856 TTCCCCATTCCCCATTCCCC 61.599 60.000 0.00 0.00 0.00 4.81
1108 1116 4.824515 CCCTCCTCTCGTCCCGCT 62.825 72.222 0.00 0.00 0.00 5.52
1163 1178 2.937873 GCATGGAAAGTAGTTGCCGGTA 60.938 50.000 1.90 0.00 0.00 4.02
1269 1284 3.468140 GACCCCTACCTGGCGACC 61.468 72.222 0.00 0.00 0.00 4.79
1299 1314 2.104451 CTGCATGCTCTGGGTCTTCTAT 59.896 50.000 20.33 0.00 0.00 1.98
1885 2099 4.012374 GTCATGATCTTCACACACCCAAT 58.988 43.478 0.00 0.00 0.00 3.16
1992 2388 5.770663 AGACGTGTCCTCTGCTTATGTATAT 59.229 40.000 0.00 0.00 0.00 0.86
2139 2563 0.839277 TGTGTGATGCCTAGGGATGG 59.161 55.000 22.03 0.00 0.00 3.51
2140 2564 0.109342 GTGTGATGCCTAGGGATGGG 59.891 60.000 22.03 0.00 0.00 4.00
2141 2565 0.030195 TGTGATGCCTAGGGATGGGA 60.030 55.000 22.03 1.11 0.00 4.37
2148 2572 0.323178 CCTAGGGATGGGATGCATGC 60.323 60.000 11.82 11.82 0.00 4.06
2149 2573 0.323178 CTAGGGATGGGATGCATGCC 60.323 60.000 28.94 28.94 40.32 4.40
2306 2755 6.648310 CCAGGTGTAGAGCTCAACAATATATG 59.352 42.308 17.77 3.41 0.00 1.78
2436 2936 3.327757 TGCAGGGTAAAGTGATCAAGACT 59.672 43.478 0.00 0.00 0.00 3.24
2472 2972 0.032515 TGCCATTCGTCCTCTCCCTA 60.033 55.000 0.00 0.00 0.00 3.53
2582 3082 2.858344 CGAAACGCCAGAGAAACGATAT 59.142 45.455 0.00 0.00 0.00 1.63
2837 3367 2.731572 CCAAGTGATCCAATCAAGCCT 58.268 47.619 0.00 0.00 41.69 4.58
2957 3488 4.357918 AGATAGTTTGAGTGTGCCTGTT 57.642 40.909 0.00 0.00 0.00 3.16
3082 3654 8.252417 GCATGATATGGATTGTTAATTATGGCA 58.748 33.333 0.00 0.00 0.00 4.92
3204 3776 2.369394 GTTTATCCCTGGCACTTGGAG 58.631 52.381 2.57 0.00 32.76 3.86
3213 3785 3.624777 CTGGCACTTGGAGTCCATAATT 58.375 45.455 14.00 0.00 31.53 1.40
3236 3808 4.756564 ACATCTGCTATCTTCCATCCCTA 58.243 43.478 0.00 0.00 0.00 3.53
3602 4195 8.761575 ATCTTTGTTGCGTTGATAAATGATTT 57.238 26.923 0.00 0.00 0.00 2.17
3603 4196 9.853555 ATCTTTGTTGCGTTGATAAATGATTTA 57.146 25.926 0.00 0.00 0.00 1.40
3768 6197 0.467290 AAGGTTTGATGTGTGGCGGT 60.467 50.000 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.757355 TTTCCCCAGCCATGGCCG 62.757 66.667 33.14 23.58 46.19 6.13
2 3 2.054453 GTCTTTCCCCAGCCATGGC 61.054 63.158 30.12 30.12 46.19 4.40
4 5 1.341285 TGATGTCTTTCCCCAGCCATG 60.341 52.381 0.00 0.00 0.00 3.66
8 9 0.394899 CCCTGATGTCTTTCCCCAGC 60.395 60.000 0.00 0.00 0.00 4.85
9 10 1.289160 TCCCTGATGTCTTTCCCCAG 58.711 55.000 0.00 0.00 0.00 4.45
11 12 1.916181 TCTTCCCTGATGTCTTTCCCC 59.084 52.381 0.00 0.00 0.00 4.81
12 13 3.264450 TCTTCTTCCCTGATGTCTTTCCC 59.736 47.826 0.00 0.00 0.00 3.97
13 14 4.559862 TCTTCTTCCCTGATGTCTTTCC 57.440 45.455 0.00 0.00 0.00 3.13
14 15 4.880696 CCATCTTCTTCCCTGATGTCTTTC 59.119 45.833 0.00 0.00 36.72 2.62
15 16 4.537688 TCCATCTTCTTCCCTGATGTCTTT 59.462 41.667 0.00 0.00 36.72 2.52
16 17 4.107072 TCCATCTTCTTCCCTGATGTCTT 58.893 43.478 0.00 0.00 36.72 3.01
17 18 3.710677 CTCCATCTTCTTCCCTGATGTCT 59.289 47.826 0.00 0.00 36.72 3.41
18 19 3.708631 TCTCCATCTTCTTCCCTGATGTC 59.291 47.826 0.00 0.00 36.72 3.06
19 20 3.729108 TCTCCATCTTCTTCCCTGATGT 58.271 45.455 0.00 0.00 36.72 3.06
20 21 4.767578 TTCTCCATCTTCTTCCCTGATG 57.232 45.455 0.00 0.00 37.79 3.07
21 22 5.490357 TCTTTTCTCCATCTTCTTCCCTGAT 59.510 40.000 0.00 0.00 0.00 2.90
22 23 4.846367 TCTTTTCTCCATCTTCTTCCCTGA 59.154 41.667 0.00 0.00 0.00 3.86
23 24 5.171339 TCTTTTCTCCATCTTCTTCCCTG 57.829 43.478 0.00 0.00 0.00 4.45
24 25 5.850046 TTCTTTTCTCCATCTTCTTCCCT 57.150 39.130 0.00 0.00 0.00 4.20
25 26 6.901081 TTTTCTTTTCTCCATCTTCTTCCC 57.099 37.500 0.00 0.00 0.00 3.97
29 30 9.029368 CCCTTATTTTTCTTTTCTCCATCTTCT 57.971 33.333 0.00 0.00 0.00 2.85
30 31 9.025041 TCCCTTATTTTTCTTTTCTCCATCTTC 57.975 33.333 0.00 0.00 0.00 2.87
31 32 8.956446 TCCCTTATTTTTCTTTTCTCCATCTT 57.044 30.769 0.00 0.00 0.00 2.40
32 33 8.394040 TCTCCCTTATTTTTCTTTTCTCCATCT 58.606 33.333 0.00 0.00 0.00 2.90
33 34 8.581253 TCTCCCTTATTTTTCTTTTCTCCATC 57.419 34.615 0.00 0.00 0.00 3.51
34 35 8.394040 TCTCTCCCTTATTTTTCTTTTCTCCAT 58.606 33.333 0.00 0.00 0.00 3.41
35 36 7.755618 TCTCTCCCTTATTTTTCTTTTCTCCA 58.244 34.615 0.00 0.00 0.00 3.86
36 37 8.103935 TCTCTCTCCCTTATTTTTCTTTTCTCC 58.896 37.037 0.00 0.00 0.00 3.71
37 38 9.161629 CTCTCTCTCCCTTATTTTTCTTTTCTC 57.838 37.037 0.00 0.00 0.00 2.87
38 39 8.885346 TCTCTCTCTCCCTTATTTTTCTTTTCT 58.115 33.333 0.00 0.00 0.00 2.52
39 40 9.161629 CTCTCTCTCTCCCTTATTTTTCTTTTC 57.838 37.037 0.00 0.00 0.00 2.29
40 41 8.664992 ACTCTCTCTCTCCCTTATTTTTCTTTT 58.335 33.333 0.00 0.00 0.00 2.27
41 42 8.100164 CACTCTCTCTCTCCCTTATTTTTCTTT 58.900 37.037 0.00 0.00 0.00 2.52
42 43 7.310983 CCACTCTCTCTCTCCCTTATTTTTCTT 60.311 40.741 0.00 0.00 0.00 2.52
43 44 6.156083 CCACTCTCTCTCTCCCTTATTTTTCT 59.844 42.308 0.00 0.00 0.00 2.52
44 45 6.345298 CCACTCTCTCTCTCCCTTATTTTTC 58.655 44.000 0.00 0.00 0.00 2.29
45 46 5.190726 CCCACTCTCTCTCTCCCTTATTTTT 59.809 44.000 0.00 0.00 0.00 1.94
46 47 4.719273 CCCACTCTCTCTCTCCCTTATTTT 59.281 45.833 0.00 0.00 0.00 1.82
47 48 4.294347 CCCACTCTCTCTCTCCCTTATTT 58.706 47.826 0.00 0.00 0.00 1.40
48 49 3.922375 CCCACTCTCTCTCTCCCTTATT 58.078 50.000 0.00 0.00 0.00 1.40
49 50 2.425683 GCCCACTCTCTCTCTCCCTTAT 60.426 54.545 0.00 0.00 0.00 1.73
50 51 1.063567 GCCCACTCTCTCTCTCCCTTA 60.064 57.143 0.00 0.00 0.00 2.69
51 52 0.325203 GCCCACTCTCTCTCTCCCTT 60.325 60.000 0.00 0.00 0.00 3.95
52 53 1.309688 GCCCACTCTCTCTCTCCCT 59.690 63.158 0.00 0.00 0.00 4.20
53 54 2.124693 CGCCCACTCTCTCTCTCCC 61.125 68.421 0.00 0.00 0.00 4.30
54 55 2.781158 GCGCCCACTCTCTCTCTCC 61.781 68.421 0.00 0.00 0.00 3.71
55 56 1.319614 AAGCGCCCACTCTCTCTCTC 61.320 60.000 2.29 0.00 0.00 3.20
56 57 0.033991 TAAGCGCCCACTCTCTCTCT 60.034 55.000 2.29 0.00 0.00 3.10
57 58 0.101579 GTAAGCGCCCACTCTCTCTC 59.898 60.000 2.29 0.00 0.00 3.20
58 59 0.612174 TGTAAGCGCCCACTCTCTCT 60.612 55.000 2.29 0.00 0.00 3.10
59 60 0.461961 ATGTAAGCGCCCACTCTCTC 59.538 55.000 2.29 0.00 0.00 3.20
60 61 1.776662 TATGTAAGCGCCCACTCTCT 58.223 50.000 2.29 0.00 0.00 3.10
61 62 2.408050 CATATGTAAGCGCCCACTCTC 58.592 52.381 2.29 0.00 0.00 3.20
62 63 1.070758 CCATATGTAAGCGCCCACTCT 59.929 52.381 2.29 0.00 0.00 3.24
63 64 1.512926 CCATATGTAAGCGCCCACTC 58.487 55.000 2.29 0.00 0.00 3.51
64 65 0.108585 CCCATATGTAAGCGCCCACT 59.891 55.000 2.29 0.00 0.00 4.00
65 66 0.107831 TCCCATATGTAAGCGCCCAC 59.892 55.000 2.29 2.20 0.00 4.61
66 67 0.107831 GTCCCATATGTAAGCGCCCA 59.892 55.000 2.29 0.00 0.00 5.36
67 68 0.605589 GGTCCCATATGTAAGCGCCC 60.606 60.000 2.29 0.00 0.00 6.13
68 69 0.605589 GGGTCCCATATGTAAGCGCC 60.606 60.000 2.29 0.00 0.00 6.53
69 70 0.107831 TGGGTCCCATATGTAAGCGC 59.892 55.000 6.47 0.00 0.00 5.92
70 71 2.859165 ATGGGTCCCATATGTAAGCG 57.141 50.000 22.84 0.00 43.19 4.68
79 80 5.514136 CCGTTAATGTACATATGGGTCCCAT 60.514 44.000 26.87 26.87 46.99 4.00
80 81 4.202377 CCGTTAATGTACATATGGGTCCCA 60.202 45.833 14.64 14.64 38.19 4.37
81 82 4.202388 ACCGTTAATGTACATATGGGTCCC 60.202 45.833 17.48 0.00 0.00 4.46
82 83 4.964593 ACCGTTAATGTACATATGGGTCC 58.035 43.478 17.48 0.58 0.00 4.46
83 84 8.337532 GTTTAACCGTTAATGTACATATGGGTC 58.662 37.037 17.48 5.77 0.00 4.46
84 85 7.828223 TGTTTAACCGTTAATGTACATATGGGT 59.172 33.333 17.48 14.58 0.00 4.51
85 86 8.211116 TGTTTAACCGTTAATGTACATATGGG 57.789 34.615 17.48 14.45 0.00 4.00
90 91 8.623030 ACTGTTTGTTTAACCGTTAATGTACAT 58.377 29.630 1.41 1.41 35.81 2.29
91 92 7.983307 ACTGTTTGTTTAACCGTTAATGTACA 58.017 30.769 0.00 0.00 35.81 2.90
92 93 8.121708 TGACTGTTTGTTTAACCGTTAATGTAC 58.878 33.333 4.57 1.71 34.78 2.90
93 94 8.206325 TGACTGTTTGTTTAACCGTTAATGTA 57.794 30.769 4.57 0.00 34.78 2.29
94 95 7.086230 TGACTGTTTGTTTAACCGTTAATGT 57.914 32.000 4.57 0.00 34.78 2.71
95 96 7.972623 TTGACTGTTTGTTTAACCGTTAATG 57.027 32.000 4.57 0.00 34.78 1.90
98 99 9.500864 GTTTATTGACTGTTTGTTTAACCGTTA 57.499 29.630 0.00 0.00 34.78 3.18
99 100 7.218583 CGTTTATTGACTGTTTGTTTAACCGTT 59.781 33.333 0.00 0.00 34.78 4.44
100 101 6.687958 CGTTTATTGACTGTTTGTTTAACCGT 59.312 34.615 0.00 0.00 36.96 4.83
101 102 6.141053 CCGTTTATTGACTGTTTGTTTAACCG 59.859 38.462 0.00 0.00 35.81 4.44
102 103 6.974048 ACCGTTTATTGACTGTTTGTTTAACC 59.026 34.615 0.00 0.00 35.81 2.85
103 104 7.974243 ACCGTTTATTGACTGTTTGTTTAAC 57.026 32.000 0.00 0.00 37.26 2.01
104 105 8.861101 CAAACCGTTTATTGACTGTTTGTTTAA 58.139 29.630 13.38 0.00 43.58 1.52
105 106 8.395940 CAAACCGTTTATTGACTGTTTGTTTA 57.604 30.769 13.38 0.00 43.58 2.01
106 107 7.284518 CAAACCGTTTATTGACTGTTTGTTT 57.715 32.000 13.38 0.00 43.58 2.83
107 108 6.879188 CAAACCGTTTATTGACTGTTTGTT 57.121 33.333 13.38 0.00 43.58 2.83
110 111 8.460428 TCTAAACAAACCGTTTATTGACTGTTT 58.540 29.630 10.97 10.97 46.43 2.83
111 112 7.987649 TCTAAACAAACCGTTTATTGACTGTT 58.012 30.769 0.00 0.00 46.43 3.16
112 113 7.556733 TCTAAACAAACCGTTTATTGACTGT 57.443 32.000 0.00 0.00 46.43 3.55
113 114 7.589954 CCTTCTAAACAAACCGTTTATTGACTG 59.410 37.037 0.00 0.00 46.43 3.51
114 115 7.255346 CCCTTCTAAACAAACCGTTTATTGACT 60.255 37.037 0.00 0.00 46.43 3.41
115 116 6.859508 CCCTTCTAAACAAACCGTTTATTGAC 59.140 38.462 0.00 0.00 46.43 3.18
116 117 6.515365 GCCCTTCTAAACAAACCGTTTATTGA 60.515 38.462 0.00 0.00 46.43 2.57
117 118 5.631929 GCCCTTCTAAACAAACCGTTTATTG 59.368 40.000 0.00 0.00 46.43 1.90
118 119 5.279106 GGCCCTTCTAAACAAACCGTTTATT 60.279 40.000 0.00 0.00 46.43 1.40
119 120 4.219070 GGCCCTTCTAAACAAACCGTTTAT 59.781 41.667 0.00 0.00 46.43 1.40
120 121 3.569277 GGCCCTTCTAAACAAACCGTTTA 59.431 43.478 0.00 0.00 46.15 2.01
122 123 1.958579 GGCCCTTCTAAACAAACCGTT 59.041 47.619 0.00 0.00 40.50 4.44
123 124 1.612676 GGCCCTTCTAAACAAACCGT 58.387 50.000 0.00 0.00 0.00 4.83
124 125 0.885879 GGGCCCTTCTAAACAAACCG 59.114 55.000 17.04 0.00 0.00 4.44
125 126 2.003937 TGGGCCCTTCTAAACAAACC 57.996 50.000 25.70 0.00 0.00 3.27
126 127 2.696187 TGTTGGGCCCTTCTAAACAAAC 59.304 45.455 25.70 15.78 0.00 2.93
127 128 3.033659 TGTTGGGCCCTTCTAAACAAA 57.966 42.857 25.70 1.57 0.00 2.83
128 129 2.757894 TGTTGGGCCCTTCTAAACAA 57.242 45.000 25.70 2.45 0.00 2.83
129 130 2.158385 ACATGTTGGGCCCTTCTAAACA 60.158 45.455 25.70 24.01 35.41 2.83
130 131 2.492088 GACATGTTGGGCCCTTCTAAAC 59.508 50.000 25.70 18.85 0.00 2.01
131 132 2.109128 TGACATGTTGGGCCCTTCTAAA 59.891 45.455 25.70 5.13 0.00 1.85
132 133 1.707989 TGACATGTTGGGCCCTTCTAA 59.292 47.619 25.70 5.59 0.00 2.10
133 134 1.367346 TGACATGTTGGGCCCTTCTA 58.633 50.000 25.70 7.23 0.00 2.10
134 135 0.706433 ATGACATGTTGGGCCCTTCT 59.294 50.000 25.70 1.58 0.00 2.85
135 136 2.435372 TATGACATGTTGGGCCCTTC 57.565 50.000 25.70 16.33 0.00 3.46
136 137 2.831526 GTTTATGACATGTTGGGCCCTT 59.168 45.455 25.70 1.80 0.00 3.95
137 138 2.456577 GTTTATGACATGTTGGGCCCT 58.543 47.619 25.70 0.00 0.00 5.19
138 139 1.480545 GGTTTATGACATGTTGGGCCC 59.519 52.381 17.59 17.59 0.00 5.80
139 140 1.134175 CGGTTTATGACATGTTGGGCC 59.866 52.381 0.00 0.00 0.00 5.80
140 141 1.134175 CCGGTTTATGACATGTTGGGC 59.866 52.381 0.00 0.00 0.00 5.36
141 142 2.717390 TCCGGTTTATGACATGTTGGG 58.283 47.619 0.00 0.00 0.00 4.12
142 143 4.981806 AATCCGGTTTATGACATGTTGG 57.018 40.909 0.00 0.00 0.00 3.77
143 144 8.405531 AGAATTAATCCGGTTTATGACATGTTG 58.594 33.333 0.00 0.00 0.00 3.33
144 145 8.519799 AGAATTAATCCGGTTTATGACATGTT 57.480 30.769 0.00 0.00 0.00 2.71
145 146 9.621629 TTAGAATTAATCCGGTTTATGACATGT 57.378 29.630 0.00 0.00 0.00 3.21
150 151 9.959749 GCAATTTAGAATTAATCCGGTTTATGA 57.040 29.630 0.00 0.00 0.00 2.15
151 152 9.743057 TGCAATTTAGAATTAATCCGGTTTATG 57.257 29.630 0.00 0.00 0.00 1.90
153 154 9.743057 CATGCAATTTAGAATTAATCCGGTTTA 57.257 29.630 0.00 0.00 0.00 2.01
154 155 8.474025 TCATGCAATTTAGAATTAATCCGGTTT 58.526 29.630 0.00 1.12 0.00 3.27
155 156 8.006298 TCATGCAATTTAGAATTAATCCGGTT 57.994 30.769 0.00 0.00 0.00 4.44
156 157 7.581213 TCATGCAATTTAGAATTAATCCGGT 57.419 32.000 0.00 0.00 0.00 5.28
157 158 8.298854 TGATCATGCAATTTAGAATTAATCCGG 58.701 33.333 0.00 0.00 0.00 5.14
158 159 9.850628 ATGATCATGCAATTTAGAATTAATCCG 57.149 29.630 7.59 0.00 0.00 4.18
163 164 9.767228 CCCAAATGATCATGCAATTTAGAATTA 57.233 29.630 9.46 0.00 0.00 1.40
164 165 8.269317 ACCCAAATGATCATGCAATTTAGAATT 58.731 29.630 9.46 0.00 0.00 2.17
165 166 7.798071 ACCCAAATGATCATGCAATTTAGAAT 58.202 30.769 9.46 0.00 0.00 2.40
166 167 7.185318 ACCCAAATGATCATGCAATTTAGAA 57.815 32.000 9.46 0.00 0.00 2.10
167 168 6.795144 ACCCAAATGATCATGCAATTTAGA 57.205 33.333 9.46 0.00 0.00 2.10
168 169 7.852971 AAACCCAAATGATCATGCAATTTAG 57.147 32.000 9.46 0.00 0.00 1.85
169 170 8.632906 AAAAACCCAAATGATCATGCAATTTA 57.367 26.923 9.46 0.00 0.00 1.40
170 171 7.527568 AAAAACCCAAATGATCATGCAATTT 57.472 28.000 9.46 4.42 0.00 1.82
220 221 8.869109 TCACCTTTCATGATATTTCAAAAACCT 58.131 29.630 0.00 0.00 34.96 3.50
221 222 9.657419 ATCACCTTTCATGATATTTCAAAAACC 57.343 29.630 0.00 0.00 34.99 3.27
251 252 9.349713 CCACATTATAGGCTAGGTCAATAAAAA 57.650 33.333 0.00 0.00 0.00 1.94
252 253 8.499406 ACCACATTATAGGCTAGGTCAATAAAA 58.501 33.333 0.00 0.00 0.00 1.52
253 254 8.041143 ACCACATTATAGGCTAGGTCAATAAA 57.959 34.615 0.00 0.00 0.00 1.40
254 255 7.626999 ACCACATTATAGGCTAGGTCAATAA 57.373 36.000 0.00 0.00 0.00 1.40
255 256 7.954056 ACTACCACATTATAGGCTAGGTCAATA 59.046 37.037 4.34 0.00 0.00 1.90
256 257 6.787957 ACTACCACATTATAGGCTAGGTCAAT 59.212 38.462 4.34 0.00 0.00 2.57
257 258 6.141083 ACTACCACATTATAGGCTAGGTCAA 58.859 40.000 4.34 0.00 0.00 3.18
258 259 5.712752 ACTACCACATTATAGGCTAGGTCA 58.287 41.667 4.34 0.00 0.00 4.02
259 260 6.667558 AACTACCACATTATAGGCTAGGTC 57.332 41.667 4.34 0.00 0.00 3.85
260 261 7.447510 AAAACTACCACATTATAGGCTAGGT 57.552 36.000 0.00 3.26 0.00 3.08
282 283 8.662141 GGTGTTTTCTCGAGTATATAGCAAAAA 58.338 33.333 13.13 5.62 0.00 1.94
283 284 7.009815 CGGTGTTTTCTCGAGTATATAGCAAAA 59.990 37.037 13.13 6.33 0.00 2.44
284 285 6.474427 CGGTGTTTTCTCGAGTATATAGCAAA 59.526 38.462 13.13 0.00 0.00 3.68
285 286 5.975344 CGGTGTTTTCTCGAGTATATAGCAA 59.025 40.000 13.13 0.00 0.00 3.91
286 287 5.297527 TCGGTGTTTTCTCGAGTATATAGCA 59.702 40.000 13.13 1.44 0.00 3.49
287 288 5.755813 TCGGTGTTTTCTCGAGTATATAGC 58.244 41.667 13.13 5.44 0.00 2.97
296 297 2.019951 GCGCTCGGTGTTTTCTCGA 61.020 57.895 0.00 0.00 0.00 4.04
297 298 1.827315 TTGCGCTCGGTGTTTTCTCG 61.827 55.000 9.73 0.00 0.00 4.04
298 299 0.306533 TTTGCGCTCGGTGTTTTCTC 59.693 50.000 9.73 0.00 0.00 2.87
299 300 0.736053 TTTTGCGCTCGGTGTTTTCT 59.264 45.000 9.73 0.00 0.00 2.52
300 301 1.551145 TTTTTGCGCTCGGTGTTTTC 58.449 45.000 9.73 0.00 0.00 2.29
301 302 3.723554 TTTTTGCGCTCGGTGTTTT 57.276 42.105 9.73 0.00 0.00 2.43
330 331 9.697250 GCGCGCTAAAATAATTATACATAATCA 57.303 29.630 26.67 0.00 32.08 2.57
331 332 9.155053 GGCGCGCTAAAATAATTATACATAATC 57.845 33.333 32.29 1.83 32.08 1.75
332 333 7.849026 CGGCGCGCTAAAATAATTATACATAAT 59.151 33.333 32.29 0.00 34.59 1.28
333 334 7.174746 CGGCGCGCTAAAATAATTATACATAA 58.825 34.615 32.29 0.00 0.00 1.90
334 335 6.698107 CGGCGCGCTAAAATAATTATACATA 58.302 36.000 32.29 0.00 0.00 2.29
335 336 5.556470 CGGCGCGCTAAAATAATTATACAT 58.444 37.500 32.29 0.00 0.00 2.29
336 337 4.948588 CGGCGCGCTAAAATAATTATACA 58.051 39.130 32.29 0.00 0.00 2.29
360 361 3.035503 CAAAAAGCGCGGGGTTGC 61.036 61.111 18.03 0.00 33.37 4.17
361 362 2.355718 CCAAAAAGCGCGGGGTTG 60.356 61.111 18.03 6.28 33.37 3.77
362 363 2.519780 TCCAAAAAGCGCGGGGTT 60.520 55.556 11.48 11.48 34.82 4.11
363 364 2.764637 ATCTCCAAAAAGCGCGGGGT 62.765 55.000 8.83 0.00 0.00 4.95
364 365 2.046285 ATCTCCAAAAAGCGCGGGG 61.046 57.895 8.83 0.00 0.00 5.73
365 366 1.137404 CATCTCCAAAAAGCGCGGG 59.863 57.895 8.83 0.00 0.00 6.13
366 367 1.514873 GCATCTCCAAAAAGCGCGG 60.515 57.895 8.83 0.00 0.00 6.46
367 368 0.522076 GAGCATCTCCAAAAAGCGCG 60.522 55.000 0.00 0.00 0.00 6.86
368 369 3.319245 GAGCATCTCCAAAAAGCGC 57.681 52.632 0.00 0.00 0.00 5.92
384 385 6.541641 AGCATCTCTAACCAATTGCTTAAGAG 59.458 38.462 6.67 14.38 37.12 2.85
385 386 6.418101 AGCATCTCTAACCAATTGCTTAAGA 58.582 36.000 6.67 4.40 37.12 2.10
386 387 6.690194 AGCATCTCTAACCAATTGCTTAAG 57.310 37.500 0.00 0.00 37.12 1.85
387 388 6.683974 GAGCATCTCTAACCAATTGCTTAA 57.316 37.500 0.00 0.00 40.29 1.85
404 405 2.673368 CTCCCAACAACGTAAGAGCATC 59.327 50.000 0.00 0.00 43.62 3.91
405 406 2.301870 TCTCCCAACAACGTAAGAGCAT 59.698 45.455 0.00 0.00 43.62 3.79
406 407 1.689813 TCTCCCAACAACGTAAGAGCA 59.310 47.619 0.00 0.00 43.62 4.26
407 408 2.338500 CTCTCCCAACAACGTAAGAGC 58.662 52.381 0.00 0.00 43.62 4.09
408 409 2.028930 AGCTCTCCCAACAACGTAAGAG 60.029 50.000 0.00 0.00 43.62 2.85
409 410 1.968493 AGCTCTCCCAACAACGTAAGA 59.032 47.619 0.00 0.00 43.62 2.10
411 412 1.336517 CGAGCTCTCCCAACAACGTAA 60.337 52.381 12.85 0.00 0.00 3.18
412 413 0.242825 CGAGCTCTCCCAACAACGTA 59.757 55.000 12.85 0.00 0.00 3.57
413 414 1.006102 CGAGCTCTCCCAACAACGT 60.006 57.895 12.85 0.00 0.00 3.99
414 415 1.006102 ACGAGCTCTCCCAACAACG 60.006 57.895 12.85 0.00 0.00 4.10
415 416 1.569479 GCACGAGCTCTCCCAACAAC 61.569 60.000 12.85 0.00 37.91 3.32
416 417 1.301716 GCACGAGCTCTCCCAACAA 60.302 57.895 12.85 0.00 37.91 2.83
417 418 2.038814 TTGCACGAGCTCTCCCAACA 62.039 55.000 12.85 0.00 42.74 3.33
418 419 1.301716 TTGCACGAGCTCTCCCAAC 60.302 57.895 12.85 0.00 42.74 3.77
419 420 1.301716 GTTGCACGAGCTCTCCCAA 60.302 57.895 12.85 8.73 42.74 4.12
420 421 2.343758 GTTGCACGAGCTCTCCCA 59.656 61.111 12.85 2.55 42.74 4.37
421 422 2.209064 TACGTTGCACGAGCTCTCCC 62.209 60.000 12.85 0.00 46.05 4.30
422 423 1.071567 GTACGTTGCACGAGCTCTCC 61.072 60.000 12.85 0.07 46.05 3.71
423 424 1.396543 CGTACGTTGCACGAGCTCTC 61.397 60.000 12.85 1.33 46.05 3.20
424 425 1.442184 CGTACGTTGCACGAGCTCT 60.442 57.895 12.85 0.00 46.05 4.09
425 426 1.728426 ACGTACGTTGCACGAGCTC 60.728 57.895 16.72 2.73 46.05 4.09
426 427 2.014554 CACGTACGTTGCACGAGCT 61.015 57.895 20.23 0.00 46.05 4.09
427 428 2.464189 CACGTACGTTGCACGAGC 59.536 61.111 20.23 0.00 46.05 5.03
428 429 1.614227 ATGCACGTACGTTGCACGAG 61.614 55.000 32.45 17.82 46.05 4.18
429 430 1.216298 AATGCACGTACGTTGCACGA 61.216 50.000 32.45 19.18 46.05 4.35
431 432 1.749153 AAAATGCACGTACGTTGCAC 58.251 45.000 32.45 19.05 41.61 4.57
432 433 2.476873 AAAAATGCACGTACGTTGCA 57.523 40.000 32.13 32.13 43.04 4.08
433 434 2.337352 GCTAAAAATGCACGTACGTTGC 59.663 45.455 25.69 25.69 0.00 4.17
434 435 3.546617 TGCTAAAAATGCACGTACGTTG 58.453 40.909 20.23 15.10 35.31 4.10
435 436 3.881780 TGCTAAAAATGCACGTACGTT 57.118 38.095 20.23 4.82 35.31 3.99
436 437 3.881780 TTGCTAAAAATGCACGTACGT 57.118 38.095 16.72 16.72 40.40 3.57
437 438 3.783943 GGATTGCTAAAAATGCACGTACG 59.216 43.478 15.01 15.01 40.40 3.67
438 439 4.102649 GGGATTGCTAAAAATGCACGTAC 58.897 43.478 0.00 0.00 40.40 3.67
439 440 4.013728 AGGGATTGCTAAAAATGCACGTA 58.986 39.130 0.00 0.00 40.40 3.57
440 441 2.825532 AGGGATTGCTAAAAATGCACGT 59.174 40.909 0.00 0.00 40.40 4.49
441 442 3.508744 AGGGATTGCTAAAAATGCACG 57.491 42.857 0.00 0.00 40.40 5.34
442 443 3.371898 GCAAGGGATTGCTAAAAATGCAC 59.628 43.478 5.74 0.00 44.15 4.57
443 444 3.598299 GCAAGGGATTGCTAAAAATGCA 58.402 40.909 5.74 0.00 44.15 3.96
444 445 2.938451 GGCAAGGGATTGCTAAAAATGC 59.062 45.455 12.25 0.00 46.56 3.56
464 465 0.727457 CGAGCTCTATCATGCGACGG 60.727 60.000 12.85 0.00 33.41 4.79
469 470 1.575244 TTGCACGAGCTCTATCATGC 58.425 50.000 12.85 13.30 42.74 4.06
470 471 3.193263 AGTTTGCACGAGCTCTATCATG 58.807 45.455 12.85 3.52 42.74 3.07
471 472 3.533606 AGTTTGCACGAGCTCTATCAT 57.466 42.857 12.85 0.00 42.74 2.45
475 476 3.386768 AGAAAGTTTGCACGAGCTCTA 57.613 42.857 12.85 0.00 42.74 2.43
477 478 2.660362 CGAAGAAAGTTTGCACGAGCTC 60.660 50.000 2.73 2.73 42.74 4.09
482 483 3.319238 ACTTCGAAGAAAGTTTGCACG 57.681 42.857 31.08 1.26 45.90 5.34
483 484 7.739295 TGATATACTTCGAAGAAAGTTTGCAC 58.261 34.615 31.08 11.34 45.90 4.57
484 485 7.899178 TGATATACTTCGAAGAAAGTTTGCA 57.101 32.000 31.08 14.39 45.90 4.08
485 486 8.821894 AGATGATATACTTCGAAGAAAGTTTGC 58.178 33.333 31.08 13.82 45.90 3.68
493 494 7.549488 TCGCTATGAGATGATATACTTCGAAGA 59.451 37.037 31.08 15.04 0.00 2.87
579 584 1.865865 TGAAGTCCAACGAACTGAGC 58.134 50.000 0.00 0.00 0.00 4.26
709 714 2.290071 CCCTACGGTCCAAGTTCAACAT 60.290 50.000 0.00 0.00 0.00 2.71
710 715 1.071071 CCCTACGGTCCAAGTTCAACA 59.929 52.381 0.00 0.00 0.00 3.33
746 751 2.634940 TGGAGGTAAGCTCTGATATGGC 59.365 50.000 0.00 0.00 0.00 4.40
785 790 6.427547 TGACGTGGAGGTAAAATACGATTTTT 59.572 34.615 0.00 7.70 38.08 1.94
795 800 3.735591 CTTTCCTGACGTGGAGGTAAAA 58.264 45.455 9.53 4.28 37.43 1.52
900 905 0.033503 GAATGGGGTTCGGGGTGATT 60.034 55.000 0.00 0.00 0.00 2.57
916 921 0.567687 GGGAATGGGGAATGGGGAAT 59.432 55.000 0.00 0.00 0.00 3.01
917 922 1.598856 GGGGAATGGGGAATGGGGAA 61.599 60.000 0.00 0.00 0.00 3.97
918 923 2.018086 GGGGAATGGGGAATGGGGA 61.018 63.158 0.00 0.00 0.00 4.81
919 924 1.677950 ATGGGGAATGGGGAATGGGG 61.678 60.000 0.00 0.00 0.00 4.96
920 925 0.268566 AATGGGGAATGGGGAATGGG 59.731 55.000 0.00 0.00 0.00 4.00
921 926 1.720781 GAATGGGGAATGGGGAATGG 58.279 55.000 0.00 0.00 0.00 3.16
922 927 1.720781 GGAATGGGGAATGGGGAATG 58.279 55.000 0.00 0.00 0.00 2.67
923 928 0.567687 GGGAATGGGGAATGGGGAAT 59.432 55.000 0.00 0.00 0.00 3.01
924 929 1.598856 GGGGAATGGGGAATGGGGAA 61.599 60.000 0.00 0.00 0.00 3.97
925 930 2.018086 GGGGAATGGGGAATGGGGA 61.018 63.158 0.00 0.00 0.00 4.81
926 931 1.677950 ATGGGGAATGGGGAATGGGG 61.678 60.000 0.00 0.00 0.00 4.96
927 932 0.268566 AATGGGGAATGGGGAATGGG 59.731 55.000 0.00 0.00 0.00 4.00
928 933 1.720781 GAATGGGGAATGGGGAATGG 58.279 55.000 0.00 0.00 0.00 3.16
929 934 1.720781 GGAATGGGGAATGGGGAATG 58.279 55.000 0.00 0.00 0.00 2.67
930 935 0.567687 GGGAATGGGGAATGGGGAAT 59.432 55.000 0.00 0.00 0.00 3.01
931 936 1.598856 GGGGAATGGGGAATGGGGAA 61.599 60.000 0.00 0.00 0.00 3.97
932 937 2.018086 GGGGAATGGGGAATGGGGA 61.018 63.158 0.00 0.00 0.00 4.81
933 938 1.895886 TTGGGGAATGGGGAATGGGG 61.896 60.000 0.00 0.00 0.00 4.96
934 939 0.398948 CTTGGGGAATGGGGAATGGG 60.399 60.000 0.00 0.00 0.00 4.00
935 940 0.339510 ACTTGGGGAATGGGGAATGG 59.660 55.000 0.00 0.00 0.00 3.16
936 941 1.780503 GACTTGGGGAATGGGGAATG 58.219 55.000 0.00 0.00 0.00 2.67
1119 1134 3.669251 AGATTAGATTAGACCAGCGGC 57.331 47.619 0.00 0.00 0.00 6.53
1163 1178 3.189606 TCAGATCCATACCCCAGTTGTT 58.810 45.455 0.00 0.00 0.00 2.83
1169 1184 2.107031 CAAGCATCAGATCCATACCCCA 59.893 50.000 0.00 0.00 0.00 4.96
1299 1314 4.731853 TGGACGATGGGGAGGCCA 62.732 66.667 5.01 0.00 0.00 5.36
1427 1446 2.234300 ACGCCGAAAAGAGACAGAAA 57.766 45.000 0.00 0.00 0.00 2.52
1548 1614 2.334946 CCACGCCCACCATGAACAG 61.335 63.158 0.00 0.00 0.00 3.16
1885 2099 5.472148 CAAGGCAGCATCATGTAAAAGAAA 58.528 37.500 0.00 0.00 0.00 2.52
1957 2179 2.363711 GACACGTCTGGGCTGTGTGA 62.364 60.000 1.50 0.00 46.13 3.58
1992 2388 0.676466 CTGGCTACACGGGATGCAAA 60.676 55.000 0.00 0.00 0.00 3.68
2139 2563 3.480470 ACAACACTATAGGCATGCATCC 58.520 45.455 21.36 1.57 0.00 3.51
2140 2564 6.652481 AGATTACAACACTATAGGCATGCATC 59.348 38.462 21.36 8.30 0.00 3.91
2141 2565 6.537355 AGATTACAACACTATAGGCATGCAT 58.463 36.000 21.36 16.31 0.00 3.96
2148 2572 8.668510 AGATGCAAAGATTACAACACTATAGG 57.331 34.615 4.43 0.00 0.00 2.57
2149 2573 9.926751 CAAGATGCAAAGATTACAACACTATAG 57.073 33.333 0.00 0.00 0.00 1.31
2217 2660 7.510001 TGGTACCGTATCCCTTTCTCATTAATA 59.490 37.037 7.57 0.00 0.00 0.98
2230 2673 1.444672 GTGGCTGGTACCGTATCCC 59.555 63.158 7.57 3.45 0.00 3.85
2356 2805 9.982651 AAAGCACACGTCTCATTAAGTATATAT 57.017 29.630 0.00 0.00 0.00 0.86
2436 2936 0.744874 GCATGTACTCCACGCTCCTA 59.255 55.000 0.00 0.00 0.00 2.94
2472 2972 0.759346 AGCCGTTGAGGAAGTTCACT 59.241 50.000 5.01 0.00 45.00 3.41
2582 3082 5.948758 AGATAGTTAGATCGATGCATGGAGA 59.051 40.000 16.78 7.92 0.00 3.71
2837 3367 1.094785 GGCTAAAAATCTCTGCCGCA 58.905 50.000 0.00 0.00 33.96 5.69
3204 3776 8.097038 TGGAAGATAGCAGATGTAATTATGGAC 58.903 37.037 0.00 0.00 0.00 4.02
3213 3785 4.756564 AGGGATGGAAGATAGCAGATGTA 58.243 43.478 0.00 0.00 0.00 2.29
3459 4050 4.637483 TGTGAAAAGAGCTTGGACAAAG 57.363 40.909 0.00 0.00 39.07 2.77
3602 4195 7.603180 AGCATATTATCCCTGCTCGATTATA 57.397 36.000 0.00 0.00 42.35 0.98
3603 4196 6.491714 AGCATATTATCCCTGCTCGATTAT 57.508 37.500 0.00 0.00 42.35 1.28
3611 4204 6.648879 TGGTTTTAAGCATATTATCCCTGC 57.351 37.500 0.00 0.00 36.15 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.