Multiple sequence alignment - TraesCS1D01G364800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G364800 chr1D 100.000 5358 0 0 1 5358 445536854 445542211 0.000000e+00 9895.0
1 TraesCS1D01G364800 chr1D 89.167 240 18 6 194 426 4666427 4666665 5.250000e-75 292.0
2 TraesCS1D01G364800 chr1A 90.774 4433 231 71 579 4917 541627875 541632223 0.000000e+00 5757.0
3 TraesCS1D01G364800 chr1A 91.466 457 28 6 4909 5358 541632265 541632717 7.620000e-173 617.0
4 TraesCS1D01G364800 chr1B 91.727 4122 217 53 426 4482 608528134 608532196 0.000000e+00 5609.0
5 TraesCS1D01G364800 chr1B 86.243 378 14 15 4480 4835 608532299 608532660 5.070000e-100 375.0
6 TraesCS1D01G364800 chr1B 77.381 168 20 12 5192 5358 608533096 608533246 3.440000e-12 84.2
7 TraesCS1D01G364800 chr7D 90.719 431 30 7 1 425 104080152 104080578 2.800000e-157 566.0
8 TraesCS1D01G364800 chr7D 89.020 255 23 5 1 252 6371985 6371733 1.450000e-80 311.0
9 TraesCS1D01G364800 chr7D 89.316 234 17 8 194 423 17827620 17827849 2.440000e-73 287.0
10 TraesCS1D01G364800 chr2A 89.252 428 40 5 1 425 205248732 205249156 1.020000e-146 531.0
11 TraesCS1D01G364800 chr7A 90.649 385 27 7 45 425 32795035 32795414 2.230000e-138 503.0
12 TraesCS1D01G364800 chr7A 90.213 235 17 6 194 425 149551898 149552129 8.720000e-78 302.0
13 TraesCS1D01G364800 chr6B 87.857 280 32 2 1 280 278149980 278150257 1.440000e-85 327.0
14 TraesCS1D01G364800 chr6B 90.040 251 21 3 1 250 675448051 675448298 6.690000e-84 322.0
15 TraesCS1D01G364800 chr7B 91.810 232 19 0 1 232 6166273 6166504 1.860000e-84 324.0
16 TraesCS1D01G364800 chr3D 92.105 228 18 0 1 228 568226003 568225776 6.690000e-84 322.0
17 TraesCS1D01G364800 chr2D 91.026 234 20 1 1 233 587251986 587252219 1.120000e-81 315.0
18 TraesCS1D01G364800 chr3A 88.889 234 22 4 194 425 31545960 31546191 8.780000e-73 285.0
19 TraesCS1D01G364800 chr3A 92.462 199 13 2 194 390 726857255 726857057 3.160000e-72 283.0
20 TraesCS1D01G364800 chr6A 88.789 223 20 5 207 425 453879253 453879032 8.850000e-68 268.0
21 TraesCS1D01G364800 chr6A 100.000 28 0 0 4437 4464 175105092 175105065 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G364800 chr1D 445536854 445542211 5357 False 9895.000000 9895 100.000 1 5358 1 chr1D.!!$F2 5357
1 TraesCS1D01G364800 chr1A 541627875 541632717 4842 False 3187.000000 5757 91.120 579 5358 2 chr1A.!!$F1 4779
2 TraesCS1D01G364800 chr1B 608528134 608533246 5112 False 2022.733333 5609 85.117 426 5358 3 chr1B.!!$F1 4932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 728 0.037326 TCACCTGTCACGCTCCAATC 60.037 55.000 0.00 0.0 0.00 2.67 F
1424 1481 0.113580 AACCCCGTTTTACTGGGCAT 59.886 50.000 6.26 0.0 45.45 4.40 F
1541 1610 0.322997 TGCGGATTTGGGGATCGTTT 60.323 50.000 0.00 0.0 0.00 3.60 F
1812 1885 0.548031 GGATGAATGTCTGCCTCCCA 59.452 55.000 0.00 0.0 0.00 4.37 F
1813 1886 1.064463 GGATGAATGTCTGCCTCCCAA 60.064 52.381 0.00 0.0 0.00 4.12 F
2333 2419 1.743996 TTTGGCACCTTTGGTTTTGC 58.256 45.000 0.00 0.0 31.02 3.68 F
3241 3342 1.813513 ACTTGCTGCTGCGAACTTAT 58.186 45.000 11.21 0.0 43.34 1.73 F
3991 4096 0.752009 TCTACAGAGGGCTACCAGCG 60.752 60.000 0.00 0.0 43.62 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1602 1671 0.179054 GGCCGGACTTGTAATCTCCC 60.179 60.000 5.05 0.0 0.00 4.30 R
2538 2629 1.264288 GTGTCCTAACTGTGCACTTGC 59.736 52.381 19.41 0.0 42.50 4.01 R
2935 3035 1.494721 AGAGAGCACCTCCAAAAACCA 59.505 47.619 2.95 0.0 42.97 3.67 R
3612 3714 1.523154 GGTGCGGTTTCATGCTTGGA 61.523 55.000 0.00 0.0 0.00 3.53 R
3785 3890 3.759581 AGTTGGTGAGAGCAATTGATGT 58.240 40.909 10.34 0.0 37.94 3.06 R
3835 3940 3.201266 GTGGGTAAATGATGACCAGGGTA 59.799 47.826 0.00 0.0 37.47 3.69 R
4342 4447 1.081513 ACCTATCACAACCTACCCCCA 59.918 52.381 0.00 0.0 0.00 4.96 R
5254 5742 0.179032 TGTCGAAAGGCCTGAGCAAA 60.179 50.000 5.69 0.0 42.56 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.269241 GGTGCTGTCCAGGTAGCC 59.731 66.667 13.65 7.02 39.15 3.93
18 19 2.592993 GGTGCTGTCCAGGTAGCCA 61.593 63.158 13.65 2.70 39.15 4.75
19 20 1.604378 GTGCTGTCCAGGTAGCCAT 59.396 57.895 13.65 0.00 39.15 4.40
20 21 0.745845 GTGCTGTCCAGGTAGCCATG 60.746 60.000 13.65 0.00 39.15 3.66
21 22 1.153086 GCTGTCCAGGTAGCCATGG 60.153 63.158 7.63 7.63 37.97 3.66
22 23 1.626356 GCTGTCCAGGTAGCCATGGA 61.626 60.000 18.40 0.00 43.34 3.41
23 24 0.467384 CTGTCCAGGTAGCCATGGAG 59.533 60.000 18.40 0.00 46.09 3.86
24 25 0.982852 TGTCCAGGTAGCCATGGAGG 60.983 60.000 18.40 6.68 46.09 4.30
25 26 0.983378 GTCCAGGTAGCCATGGAGGT 60.983 60.000 18.40 0.76 46.09 3.85
26 27 0.253160 TCCAGGTAGCCATGGAGGTT 60.253 55.000 18.40 0.00 40.70 3.50
27 28 0.107017 CCAGGTAGCCATGGAGGTTG 60.107 60.000 18.40 6.33 39.02 3.77
28 29 0.107017 CAGGTAGCCATGGAGGTTGG 60.107 60.000 18.40 0.00 40.61 3.77
38 39 4.770874 GAGGTTGGCGCCGGCTAA 62.771 66.667 26.68 14.11 37.29 3.09
39 40 4.778143 AGGTTGGCGCCGGCTAAG 62.778 66.667 26.68 10.55 40.54 2.18
40 41 4.770874 GGTTGGCGCCGGCTAAGA 62.771 66.667 26.68 4.98 40.54 2.10
41 42 3.497031 GTTGGCGCCGGCTAAGAC 61.497 66.667 26.68 12.41 40.54 3.01
45 46 3.849953 GCGCCGGCTAAGACGTTG 61.850 66.667 26.68 6.32 35.83 4.10
46 47 3.849953 CGCCGGCTAAGACGTTGC 61.850 66.667 26.68 0.00 28.54 4.17
47 48 3.497031 GCCGGCTAAGACGTTGCC 61.497 66.667 22.15 3.89 42.94 4.52
50 51 3.497031 GGCTAAGACGTTGCCGGC 61.497 66.667 22.73 22.73 44.68 6.13
65 66 4.864334 GGCGATGCCTCCCCACAG 62.864 72.222 0.00 0.00 46.69 3.66
67 68 4.100084 CGATGCCTCCCCACAGCA 62.100 66.667 0.00 0.00 41.50 4.41
69 70 1.826921 GATGCCTCCCCACAGCATG 60.827 63.158 0.77 0.00 46.81 4.06
70 71 2.274948 GATGCCTCCCCACAGCATGA 62.275 60.000 0.00 0.00 46.81 3.07
71 72 1.866483 ATGCCTCCCCACAGCATGAA 61.866 55.000 0.00 0.00 45.20 2.57
72 73 1.751927 GCCTCCCCACAGCATGAAG 60.752 63.158 0.00 0.00 39.69 3.02
73 74 1.687612 CCTCCCCACAGCATGAAGT 59.312 57.895 0.00 0.00 39.69 3.01
74 75 0.038744 CCTCCCCACAGCATGAAGTT 59.961 55.000 0.00 0.00 39.69 2.66
75 76 1.171308 CTCCCCACAGCATGAAGTTG 58.829 55.000 0.00 0.00 39.69 3.16
76 77 0.478072 TCCCCACAGCATGAAGTTGT 59.522 50.000 0.00 0.00 42.92 3.32
80 81 1.951510 ACAGCATGAAGTTGTGGCG 59.048 52.632 0.00 0.00 40.42 5.69
81 82 1.210931 CAGCATGAAGTTGTGGCGG 59.789 57.895 0.00 0.00 39.69 6.13
82 83 2.126346 GCATGAAGTTGTGGCGGC 60.126 61.111 0.00 0.00 0.00 6.53
83 84 2.568090 CATGAAGTTGTGGCGGCC 59.432 61.111 13.32 13.32 0.00 6.13
84 85 2.115052 ATGAAGTTGTGGCGGCCA 59.885 55.556 19.77 19.77 0.00 5.36
85 86 1.530419 ATGAAGTTGTGGCGGCCAA 60.530 52.632 25.70 11.51 34.18 4.52
86 87 1.526575 ATGAAGTTGTGGCGGCCAAG 61.527 55.000 25.70 0.00 34.18 3.61
87 88 2.912025 AAGTTGTGGCGGCCAAGG 60.912 61.111 25.70 0.00 34.18 3.61
98 99 4.162690 GCCAAGGCGGACGGAGAT 62.163 66.667 0.00 0.00 36.56 2.75
99 100 2.107141 CCAAGGCGGACGGAGATC 59.893 66.667 0.00 0.00 36.56 2.75
100 101 2.278857 CAAGGCGGACGGAGATCG 60.279 66.667 0.00 0.00 45.88 3.69
101 102 4.208686 AAGGCGGACGGAGATCGC 62.209 66.667 0.00 0.00 46.57 4.58
103 104 4.933064 GGCGGACGGAGATCGCTG 62.933 72.222 3.43 3.43 46.52 5.18
104 105 3.889044 GCGGACGGAGATCGCTGA 61.889 66.667 12.67 0.00 44.84 4.26
105 106 2.798689 CGGACGGAGATCGCTGAA 59.201 61.111 12.67 0.00 43.89 3.02
106 107 1.138883 CGGACGGAGATCGCTGAAA 59.861 57.895 12.67 0.00 43.89 2.69
107 108 1.140407 CGGACGGAGATCGCTGAAAC 61.140 60.000 12.67 3.29 43.89 2.78
108 109 0.108804 GGACGGAGATCGCTGAAACA 60.109 55.000 12.67 0.00 43.89 2.83
109 110 1.272781 GACGGAGATCGCTGAAACAG 58.727 55.000 12.67 0.00 43.89 3.16
152 153 4.498520 CGCGAGCGAGGTGATGGT 62.499 66.667 12.58 0.00 42.83 3.55
153 154 2.887568 GCGAGCGAGGTGATGGTG 60.888 66.667 0.00 0.00 0.00 4.17
154 155 2.887568 CGAGCGAGGTGATGGTGC 60.888 66.667 0.00 0.00 0.00 5.01
155 156 2.512515 GAGCGAGGTGATGGTGCC 60.513 66.667 0.00 0.00 0.00 5.01
156 157 4.457496 AGCGAGGTGATGGTGCCG 62.457 66.667 0.00 0.00 0.00 5.69
157 158 4.451150 GCGAGGTGATGGTGCCGA 62.451 66.667 0.00 0.00 0.00 5.54
158 159 2.509336 CGAGGTGATGGTGCCGAC 60.509 66.667 0.00 0.00 0.00 4.79
159 160 2.509336 GAGGTGATGGTGCCGACG 60.509 66.667 0.00 0.00 0.00 5.12
160 161 3.296709 GAGGTGATGGTGCCGACGT 62.297 63.158 0.00 0.00 0.00 4.34
161 162 2.358247 GGTGATGGTGCCGACGTT 60.358 61.111 0.00 0.00 0.00 3.99
162 163 2.677003 GGTGATGGTGCCGACGTTG 61.677 63.158 0.00 0.00 0.00 4.10
163 164 1.959226 GTGATGGTGCCGACGTTGT 60.959 57.895 1.30 0.00 0.00 3.32
164 165 1.227704 TGATGGTGCCGACGTTGTT 60.228 52.632 1.30 0.00 0.00 2.83
165 166 1.206578 GATGGTGCCGACGTTGTTG 59.793 57.895 1.30 0.00 0.00 3.33
166 167 2.182614 GATGGTGCCGACGTTGTTGG 62.183 60.000 1.30 0.00 39.96 3.77
167 168 2.589442 GGTGCCGACGTTGTTGGA 60.589 61.111 7.41 0.00 39.36 3.53
168 169 2.604174 GGTGCCGACGTTGTTGGAG 61.604 63.158 7.41 0.00 39.36 3.86
169 170 1.593209 GTGCCGACGTTGTTGGAGA 60.593 57.895 7.41 0.00 39.36 3.71
170 171 1.300620 TGCCGACGTTGTTGGAGAG 60.301 57.895 7.41 0.00 39.36 3.20
171 172 2.668280 GCCGACGTTGTTGGAGAGC 61.668 63.158 7.41 0.00 39.36 4.09
172 173 2.372690 CCGACGTTGTTGGAGAGCG 61.373 63.158 1.30 0.00 39.36 5.03
173 174 1.371267 CGACGTTGTTGGAGAGCGA 60.371 57.895 0.00 0.00 0.00 4.93
174 175 0.937699 CGACGTTGTTGGAGAGCGAA 60.938 55.000 0.00 0.00 0.00 4.70
175 176 1.214367 GACGTTGTTGGAGAGCGAAA 58.786 50.000 0.00 0.00 0.00 3.46
176 177 1.192534 GACGTTGTTGGAGAGCGAAAG 59.807 52.381 0.00 0.00 0.00 2.62
177 178 0.512952 CGTTGTTGGAGAGCGAAAGG 59.487 55.000 0.00 0.00 0.00 3.11
178 179 0.875059 GTTGTTGGAGAGCGAAAGGG 59.125 55.000 0.00 0.00 0.00 3.95
179 180 0.889186 TTGTTGGAGAGCGAAAGGGC 60.889 55.000 0.00 0.00 0.00 5.19
180 181 2.047274 TTGGAGAGCGAAAGGGCG 60.047 61.111 0.00 0.00 38.18 6.13
181 182 3.605749 TTGGAGAGCGAAAGGGCGG 62.606 63.158 0.00 0.00 38.18 6.13
182 183 4.083862 GGAGAGCGAAAGGGCGGT 62.084 66.667 0.00 0.00 45.54 5.68
183 184 2.815647 GAGAGCGAAAGGGCGGTG 60.816 66.667 0.00 0.00 42.62 4.94
184 185 4.394712 AGAGCGAAAGGGCGGTGG 62.395 66.667 0.00 0.00 42.62 4.61
243 244 4.864334 GGTGGCGGATGGAGCAGG 62.864 72.222 0.00 0.00 36.08 4.85
287 288 1.674057 CCCGGTGGCTATCTGATCC 59.326 63.158 0.00 0.00 0.00 3.36
288 289 1.674057 CCGGTGGCTATCTGATCCC 59.326 63.158 0.00 0.00 0.00 3.85
289 290 1.121407 CCGGTGGCTATCTGATCCCA 61.121 60.000 0.00 6.01 0.00 4.37
290 291 0.758734 CGGTGGCTATCTGATCCCAA 59.241 55.000 10.45 0.00 0.00 4.12
291 292 1.270518 CGGTGGCTATCTGATCCCAAG 60.271 57.143 10.45 5.88 0.00 3.61
292 293 1.771255 GGTGGCTATCTGATCCCAAGT 59.229 52.381 10.45 0.00 0.00 3.16
293 294 2.173569 GGTGGCTATCTGATCCCAAGTT 59.826 50.000 10.45 0.00 0.00 2.66
294 295 3.209410 GTGGCTATCTGATCCCAAGTTG 58.791 50.000 10.45 0.00 0.00 3.16
295 296 3.114606 TGGCTATCTGATCCCAAGTTGA 58.885 45.455 3.87 0.00 0.00 3.18
296 297 3.523157 TGGCTATCTGATCCCAAGTTGAA 59.477 43.478 3.87 0.00 0.00 2.69
297 298 4.133078 GGCTATCTGATCCCAAGTTGAAG 58.867 47.826 3.87 0.00 0.00 3.02
298 299 4.141620 GGCTATCTGATCCCAAGTTGAAGA 60.142 45.833 3.87 0.99 0.00 2.87
299 300 5.055812 GCTATCTGATCCCAAGTTGAAGAG 58.944 45.833 3.87 0.00 0.00 2.85
300 301 3.988976 TCTGATCCCAAGTTGAAGAGG 57.011 47.619 3.87 0.00 0.00 3.69
301 302 3.251484 TCTGATCCCAAGTTGAAGAGGT 58.749 45.455 3.87 0.00 0.00 3.85
302 303 4.425772 TCTGATCCCAAGTTGAAGAGGTA 58.574 43.478 3.87 0.00 0.00 3.08
303 304 4.467795 TCTGATCCCAAGTTGAAGAGGTAG 59.532 45.833 3.87 1.98 0.00 3.18
304 305 3.519510 TGATCCCAAGTTGAAGAGGTAGG 59.480 47.826 3.87 0.00 0.00 3.18
305 306 2.986050 TCCCAAGTTGAAGAGGTAGGT 58.014 47.619 3.87 0.00 0.00 3.08
306 307 3.323775 TCCCAAGTTGAAGAGGTAGGTT 58.676 45.455 3.87 0.00 0.00 3.50
307 308 3.720002 TCCCAAGTTGAAGAGGTAGGTTT 59.280 43.478 3.87 0.00 0.00 3.27
308 309 4.909088 TCCCAAGTTGAAGAGGTAGGTTTA 59.091 41.667 3.87 0.00 0.00 2.01
309 310 5.012768 TCCCAAGTTGAAGAGGTAGGTTTAG 59.987 44.000 3.87 0.00 0.00 1.85
310 311 5.246307 CCAAGTTGAAGAGGTAGGTTTAGG 58.754 45.833 3.87 0.00 0.00 2.69
311 312 5.246307 CAAGTTGAAGAGGTAGGTTTAGGG 58.754 45.833 0.00 0.00 0.00 3.53
312 313 4.500452 AGTTGAAGAGGTAGGTTTAGGGT 58.500 43.478 0.00 0.00 0.00 4.34
313 314 4.912133 AGTTGAAGAGGTAGGTTTAGGGTT 59.088 41.667 0.00 0.00 0.00 4.11
314 315 5.371769 AGTTGAAGAGGTAGGTTTAGGGTTT 59.628 40.000 0.00 0.00 0.00 3.27
315 316 5.917545 TGAAGAGGTAGGTTTAGGGTTTT 57.082 39.130 0.00 0.00 0.00 2.43
316 317 5.627135 TGAAGAGGTAGGTTTAGGGTTTTG 58.373 41.667 0.00 0.00 0.00 2.44
317 318 4.030314 AGAGGTAGGTTTAGGGTTTTGC 57.970 45.455 0.00 0.00 0.00 3.68
318 319 2.745821 GAGGTAGGTTTAGGGTTTTGCG 59.254 50.000 0.00 0.00 0.00 4.85
319 320 2.107031 AGGTAGGTTTAGGGTTTTGCGT 59.893 45.455 0.00 0.00 0.00 5.24
320 321 2.227149 GGTAGGTTTAGGGTTTTGCGTG 59.773 50.000 0.00 0.00 0.00 5.34
321 322 1.324383 AGGTTTAGGGTTTTGCGTGG 58.676 50.000 0.00 0.00 0.00 4.94
322 323 0.315886 GGTTTAGGGTTTTGCGTGGG 59.684 55.000 0.00 0.00 0.00 4.61
323 324 1.034356 GTTTAGGGTTTTGCGTGGGT 58.966 50.000 0.00 0.00 0.00 4.51
324 325 1.033574 TTTAGGGTTTTGCGTGGGTG 58.966 50.000 0.00 0.00 0.00 4.61
325 326 0.824182 TTAGGGTTTTGCGTGGGTGG 60.824 55.000 0.00 0.00 0.00 4.61
326 327 4.293648 GGGTTTTGCGTGGGTGGC 62.294 66.667 0.00 0.00 0.00 5.01
327 328 3.223589 GGTTTTGCGTGGGTGGCT 61.224 61.111 0.00 0.00 0.00 4.75
328 329 1.899534 GGTTTTGCGTGGGTGGCTA 60.900 57.895 0.00 0.00 0.00 3.93
329 330 1.457009 GGTTTTGCGTGGGTGGCTAA 61.457 55.000 0.00 0.00 0.00 3.09
330 331 0.318360 GTTTTGCGTGGGTGGCTAAC 60.318 55.000 0.00 0.00 0.00 2.34
331 332 0.752009 TTTTGCGTGGGTGGCTAACA 60.752 50.000 0.00 0.00 0.00 2.41
332 333 0.538516 TTTGCGTGGGTGGCTAACAT 60.539 50.000 0.00 0.00 0.00 2.71
333 334 0.958382 TTGCGTGGGTGGCTAACATC 60.958 55.000 0.00 0.00 0.00 3.06
343 344 2.682893 GCTAACATCCAGCCTCACG 58.317 57.895 0.00 0.00 32.68 4.35
344 345 0.108138 GCTAACATCCAGCCTCACGT 60.108 55.000 0.00 0.00 32.68 4.49
345 346 1.927895 CTAACATCCAGCCTCACGTC 58.072 55.000 0.00 0.00 0.00 4.34
346 347 0.172578 TAACATCCAGCCTCACGTCG 59.827 55.000 0.00 0.00 0.00 5.12
347 348 2.887568 CATCCAGCCTCACGTCGC 60.888 66.667 0.00 0.00 0.00 5.19
348 349 3.381983 ATCCAGCCTCACGTCGCA 61.382 61.111 0.00 0.00 0.00 5.10
349 350 2.942796 ATCCAGCCTCACGTCGCAA 61.943 57.895 0.00 0.00 0.00 4.85
350 351 2.244117 ATCCAGCCTCACGTCGCAAT 62.244 55.000 0.00 0.00 0.00 3.56
351 352 1.153647 CCAGCCTCACGTCGCAATA 60.154 57.895 0.00 0.00 0.00 1.90
352 353 0.530650 CCAGCCTCACGTCGCAATAT 60.531 55.000 0.00 0.00 0.00 1.28
353 354 1.269569 CCAGCCTCACGTCGCAATATA 60.270 52.381 0.00 0.00 0.00 0.86
354 355 2.610479 CCAGCCTCACGTCGCAATATAT 60.610 50.000 0.00 0.00 0.00 0.86
355 356 3.366985 CCAGCCTCACGTCGCAATATATA 60.367 47.826 0.00 0.00 0.00 0.86
356 357 3.854240 CAGCCTCACGTCGCAATATATAG 59.146 47.826 0.00 0.00 0.00 1.31
357 358 3.756963 AGCCTCACGTCGCAATATATAGA 59.243 43.478 0.00 0.00 0.00 1.98
358 359 4.399618 AGCCTCACGTCGCAATATATAGAT 59.600 41.667 0.00 0.00 0.00 1.98
359 360 4.500837 GCCTCACGTCGCAATATATAGATG 59.499 45.833 0.00 0.00 0.00 2.90
360 361 5.676331 GCCTCACGTCGCAATATATAGATGA 60.676 44.000 10.24 2.53 0.00 2.92
361 362 6.499172 CCTCACGTCGCAATATATAGATGAT 58.501 40.000 10.24 0.00 0.00 2.45
362 363 6.634837 CCTCACGTCGCAATATATAGATGATC 59.365 42.308 10.24 0.00 0.00 2.92
363 364 7.083875 TCACGTCGCAATATATAGATGATCA 57.916 36.000 0.00 0.00 0.00 2.92
364 365 7.189512 TCACGTCGCAATATATAGATGATCAG 58.810 38.462 0.09 0.00 0.00 2.90
365 366 7.065803 TCACGTCGCAATATATAGATGATCAGA 59.934 37.037 0.09 0.00 0.00 3.27
366 367 7.698130 CACGTCGCAATATATAGATGATCAGAA 59.302 37.037 0.09 0.00 0.00 3.02
367 368 8.409371 ACGTCGCAATATATAGATGATCAGAAT 58.591 33.333 0.09 0.00 0.00 2.40
368 369 9.884465 CGTCGCAATATATAGATGATCAGAATA 57.116 33.333 0.09 0.00 0.00 1.75
414 415 9.664332 ATGATCAGAATAACAATATGCTAGACC 57.336 33.333 0.09 0.00 0.00 3.85
415 416 8.097038 TGATCAGAATAACAATATGCTAGACCC 58.903 37.037 0.00 0.00 0.00 4.46
416 417 7.618019 TCAGAATAACAATATGCTAGACCCT 57.382 36.000 0.00 0.00 0.00 4.34
417 418 8.721133 TCAGAATAACAATATGCTAGACCCTA 57.279 34.615 0.00 0.00 0.00 3.53
418 419 9.326489 TCAGAATAACAATATGCTAGACCCTAT 57.674 33.333 0.00 0.00 0.00 2.57
419 420 9.950496 CAGAATAACAATATGCTAGACCCTATT 57.050 33.333 0.00 0.00 0.00 1.73
478 479 3.932580 TAGTCCAGGCACGCGCAAG 62.933 63.158 5.73 0.00 41.24 4.01
480 481 4.927782 TCCAGGCACGCGCAAGTT 62.928 61.111 5.73 0.00 41.24 2.66
512 513 0.318441 CTTCCACTCTCCACGAGCAA 59.682 55.000 0.00 0.00 43.85 3.91
521 522 0.320683 TCCACGAGCAACCATGACTG 60.321 55.000 0.00 0.00 0.00 3.51
522 523 1.499056 CACGAGCAACCATGACTGC 59.501 57.895 10.12 10.12 38.91 4.40
549 550 3.501062 CACGCACCTCCGTTAGATAGATA 59.499 47.826 0.00 0.00 39.83 1.98
553 554 5.447954 CGCACCTCCGTTAGATAGATAGATG 60.448 48.000 0.00 0.00 0.00 2.90
556 559 7.283580 GCACCTCCGTTAGATAGATAGATGTAT 59.716 40.741 0.00 0.00 0.00 2.29
572 575 9.743057 GATAGATGTATACAAGTCAGCATATCC 57.257 37.037 10.14 0.00 0.00 2.59
579 582 0.322975 AGTCAGCATATCCGCCATCC 59.677 55.000 0.00 0.00 0.00 3.51
580 583 0.322975 GTCAGCATATCCGCCATCCT 59.677 55.000 0.00 0.00 0.00 3.24
605 616 4.217550 ACACCACAAATATCTGAAAACCCG 59.782 41.667 0.00 0.00 0.00 5.28
623 634 2.162408 CCCGAAGAAATTCAGCCAAGTC 59.838 50.000 0.00 0.00 0.00 3.01
626 637 3.423645 CGAAGAAATTCAGCCAAGTCGTC 60.424 47.826 0.00 0.00 0.00 4.20
641 652 2.224549 AGTCGTCAGAAGAACGAGTGAG 59.775 50.000 5.30 0.00 38.02 3.51
642 653 2.031857 GTCGTCAGAAGAACGAGTGAGT 60.032 50.000 0.00 0.00 36.53 3.41
643 654 2.031944 TCGTCAGAAGAACGAGTGAGTG 60.032 50.000 0.00 0.00 0.00 3.51
644 655 2.031944 CGTCAGAAGAACGAGTGAGTGA 60.032 50.000 0.00 0.00 0.00 3.41
645 656 3.365465 CGTCAGAAGAACGAGTGAGTGAT 60.365 47.826 0.00 0.00 0.00 3.06
648 659 4.278419 TCAGAAGAACGAGTGAGTGATTCA 59.722 41.667 0.00 0.00 0.00 2.57
659 670 3.381272 GTGAGTGATTCAGAGGAGAGGAG 59.619 52.174 0.00 0.00 36.21 3.69
662 673 3.012274 AGTGATTCAGAGGAGAGGAGGAA 59.988 47.826 0.00 0.00 0.00 3.36
663 674 3.966665 GTGATTCAGAGGAGAGGAGGAAT 59.033 47.826 0.00 0.00 0.00 3.01
665 676 5.600484 GTGATTCAGAGGAGAGGAGGAATTA 59.400 44.000 0.00 0.00 0.00 1.40
667 678 3.917300 TCAGAGGAGAGGAGGAATTACC 58.083 50.000 0.00 0.00 39.35 2.85
668 679 2.625790 CAGAGGAGAGGAGGAATTACCG 59.374 54.545 0.00 0.00 44.74 4.02
672 683 0.396695 AGAGGAGGAATTACCGGCGA 60.397 55.000 9.30 0.00 44.74 5.54
716 727 0.615331 ATCACCTGTCACGCTCCAAT 59.385 50.000 0.00 0.00 0.00 3.16
717 728 0.037326 TCACCTGTCACGCTCCAATC 60.037 55.000 0.00 0.00 0.00 2.67
718 729 1.021390 CACCTGTCACGCTCCAATCC 61.021 60.000 0.00 0.00 0.00 3.01
719 730 1.296392 CCTGTCACGCTCCAATCCA 59.704 57.895 0.00 0.00 0.00 3.41
720 731 0.321564 CCTGTCACGCTCCAATCCAA 60.322 55.000 0.00 0.00 0.00 3.53
721 732 1.522668 CTGTCACGCTCCAATCCAAA 58.477 50.000 0.00 0.00 0.00 3.28
722 733 1.466167 CTGTCACGCTCCAATCCAAAG 59.534 52.381 0.00 0.00 0.00 2.77
783 798 1.810853 CGTCATGCGATGCACTCCA 60.811 57.895 3.85 0.00 43.04 3.86
819 834 4.269523 AAGGCTGCTGCGTGGGAA 62.270 61.111 11.67 0.00 40.82 3.97
840 863 1.119574 CCCATCCCGAATACCCGTCT 61.120 60.000 0.00 0.00 0.00 4.18
1057 1112 4.271816 CCTCGTCGGCGGAGGATG 62.272 72.222 22.80 10.27 37.50 3.51
1058 1113 4.271816 CTCGTCGGCGGAGGATGG 62.272 72.222 10.62 3.49 36.56 3.51
1373 1428 4.252493 GGTTCAGACCCCCTCCTT 57.748 61.111 0.00 0.00 40.25 3.36
1375 1430 0.547954 GGTTCAGACCCCCTCCTTCT 60.548 60.000 0.00 0.00 40.25 2.85
1398 1455 1.627297 CCCCTTCTCCTTCTTCCCCG 61.627 65.000 0.00 0.00 0.00 5.73
1399 1456 1.222113 CCTTCTCCTTCTTCCCCGC 59.778 63.158 0.00 0.00 0.00 6.13
1400 1457 1.553690 CCTTCTCCTTCTTCCCCGCA 61.554 60.000 0.00 0.00 0.00 5.69
1406 1463 1.302949 CTTCTTCCCCGCATCCCAA 59.697 57.895 0.00 0.00 0.00 4.12
1421 1478 0.896479 CCCAACCCCGTTTTACTGGG 60.896 60.000 4.93 4.93 46.76 4.45
1423 1480 0.824182 CAACCCCGTTTTACTGGGCA 60.824 55.000 6.26 0.00 45.45 5.36
1424 1481 0.113580 AACCCCGTTTTACTGGGCAT 59.886 50.000 6.26 0.00 45.45 4.40
1442 1499 3.819337 GGCATGTTGATGATCAGTAGCAT 59.181 43.478 0.09 3.67 33.46 3.79
1445 1502 5.913514 GCATGTTGATGATCAGTAGCATTTC 59.086 40.000 0.09 0.00 30.10 2.17
1488 1555 0.737219 GCTGCTGCTGGTTGATTAGG 59.263 55.000 8.53 0.00 36.03 2.69
1510 1577 1.965083 CGATCTCGTCAGTGTTTCGT 58.035 50.000 0.00 0.00 34.11 3.85
1541 1610 0.322997 TGCGGATTTGGGGATCGTTT 60.323 50.000 0.00 0.00 0.00 3.60
1542 1611 0.815095 GCGGATTTGGGGATCGTTTT 59.185 50.000 0.00 0.00 0.00 2.43
1545 1614 2.490115 CGGATTTGGGGATCGTTTTTCA 59.510 45.455 0.00 0.00 0.00 2.69
1546 1615 3.427503 CGGATTTGGGGATCGTTTTTCAG 60.428 47.826 0.00 0.00 0.00 3.02
1550 1619 2.510613 TGGGGATCGTTTTTCAGTTCC 58.489 47.619 0.00 0.00 0.00 3.62
1552 1621 3.154710 GGGGATCGTTTTTCAGTTCCTT 58.845 45.455 0.00 0.00 0.00 3.36
1560 1629 5.043248 CGTTTTTCAGTTCCTTGCTTGATT 58.957 37.500 0.00 0.00 0.00 2.57
1564 1633 5.633830 TTCAGTTCCTTGCTTGATTGATC 57.366 39.130 0.00 0.00 0.00 2.92
1566 1635 3.760151 CAGTTCCTTGCTTGATTGATCCA 59.240 43.478 0.00 0.00 0.00 3.41
1567 1636 3.760684 AGTTCCTTGCTTGATTGATCCAC 59.239 43.478 0.00 0.00 0.00 4.02
1568 1637 2.726821 TCCTTGCTTGATTGATCCACC 58.273 47.619 0.00 0.00 0.00 4.61
1569 1638 2.041485 TCCTTGCTTGATTGATCCACCA 59.959 45.455 0.00 0.00 0.00 4.17
1576 1645 3.998913 TGATTGATCCACCACTTGCTA 57.001 42.857 0.00 0.00 0.00 3.49
1580 1649 1.312815 GATCCACCACTTGCTATGCC 58.687 55.000 0.00 0.00 0.00 4.40
1584 1653 1.475751 CCACCACTTGCTATGCCTAGG 60.476 57.143 3.67 3.67 0.00 3.02
1588 1657 2.551721 CCACTTGCTATGCCTAGGATGG 60.552 54.545 14.75 6.58 0.00 3.51
1602 1671 2.173519 AGGATGGTTTGTGATGCCAAG 58.826 47.619 0.00 0.00 35.74 3.61
1610 1679 4.016444 GTTTGTGATGCCAAGGGAGATTA 58.984 43.478 0.00 0.00 0.00 1.75
1611 1680 3.281727 TGTGATGCCAAGGGAGATTAC 57.718 47.619 0.00 0.00 0.00 1.89
1613 1682 3.010027 TGTGATGCCAAGGGAGATTACAA 59.990 43.478 0.00 0.00 0.00 2.41
1726 1799 3.368948 GGGATGGAGAGATTAGATTCGGC 60.369 52.174 0.00 0.00 0.00 5.54
1727 1800 3.368948 GGATGGAGAGATTAGATTCGGCC 60.369 52.174 0.00 0.00 0.00 6.13
1786 1859 1.748493 GATATTTGGTGGGCTTTCGCA 59.252 47.619 0.00 0.00 38.10 5.10
1812 1885 0.548031 GGATGAATGTCTGCCTCCCA 59.452 55.000 0.00 0.00 0.00 4.37
1813 1886 1.064463 GGATGAATGTCTGCCTCCCAA 60.064 52.381 0.00 0.00 0.00 4.12
1939 2017 4.215399 GGTGCATATATTCCTGCGCTTTTA 59.785 41.667 9.73 0.00 45.72 1.52
1969 2047 8.604890 GCTAGTTGTAGAATTCCATTTACAGTC 58.395 37.037 0.65 2.76 0.00 3.51
2043 2126 4.683832 GAATGACGCACTGGAACTATACT 58.316 43.478 0.00 0.00 0.00 2.12
2103 2186 8.548721 CGAAAATCTGGTTACATCAACTATACC 58.451 37.037 0.00 0.00 37.30 2.73
2333 2419 1.743996 TTTGGCACCTTTGGTTTTGC 58.256 45.000 0.00 0.00 31.02 3.68
2359 2445 4.909880 GGTAACAAAACGACAATTCTCTGC 59.090 41.667 0.00 0.00 0.00 4.26
2375 2461 6.801539 TTCTCTGCGATGAAAAGTTATGTT 57.198 33.333 0.00 0.00 0.00 2.71
2428 2514 8.665685 CCTAAGCTCGTTTTGAGTTTAACATAT 58.334 33.333 0.00 0.00 45.89 1.78
2431 2517 7.574967 AAGCTCGTTTTGAGTTTAACATATGGG 60.575 37.037 7.80 0.00 45.12 4.00
2537 2628 7.311364 TCGTTTAAAAGTAGCAGAAGTTGTT 57.689 32.000 1.02 0.00 0.00 2.83
2538 2629 7.184106 TCGTTTAAAAGTAGCAGAAGTTGTTG 58.816 34.615 1.02 0.00 0.00 3.33
2598 2689 6.177610 ACTGAGTCAACTGTTACCTGAAAAA 58.822 36.000 0.00 0.00 0.00 1.94
2608 2699 6.155475 TGTTACCTGAAAAATCCCTTGTTG 57.845 37.500 0.00 0.00 0.00 3.33
2644 2735 9.346725 GCTAATCTTCTTTAGGTTGATTGTTTG 57.653 33.333 0.00 0.00 31.19 2.93
2656 2747 6.098982 AGGTTGATTGTTTGATTGGTACCAAA 59.901 34.615 30.31 13.21 39.55 3.28
2676 2767 1.888512 ACAAGTGGCCTATTGCTTGTG 59.111 47.619 20.53 6.01 46.43 3.33
2783 2882 9.846248 AGATGAATTTTTAGTGTTAAGCATGTC 57.154 29.630 0.00 0.00 0.00 3.06
2784 2883 8.986477 ATGAATTTTTAGTGTTAAGCATGTCC 57.014 30.769 0.00 0.00 0.00 4.02
2786 2885 6.569179 ATTTTTAGTGTTAAGCATGTCCGT 57.431 33.333 0.00 0.00 0.00 4.69
2858 2957 2.555325 TCTGCTAACTTTCCTTCGACGA 59.445 45.455 0.00 0.00 0.00 4.20
2935 3035 9.927081 AGACAGGATATTAAATCTTGAATGGTT 57.073 29.630 13.03 0.00 0.00 3.67
2963 3063 2.172505 TGGAGGTGCTCTCTTTTGTTCA 59.827 45.455 7.40 0.00 42.10 3.18
3105 3206 9.276590 AGTGAATATACATGTATGGACAATGTG 57.723 33.333 25.48 0.00 39.59 3.21
3122 3223 7.448161 GGACAATGTGGATATATTGGTGATGAA 59.552 37.037 0.00 0.00 39.06 2.57
3168 3269 3.207778 CCAAAATTATGCATTGGCCCAG 58.792 45.455 3.54 0.00 37.40 4.45
3241 3342 1.813513 ACTTGCTGCTGCGAACTTAT 58.186 45.000 11.21 0.00 43.34 1.73
3502 3604 5.796424 AGGATTCAGAGCAATTGTTTGTT 57.204 34.783 7.40 0.00 35.17 2.83
3582 3684 3.488721 GCAAGCTTGGATGCATAGTTCAG 60.489 47.826 27.10 0.00 42.12 3.02
3598 3700 8.630917 GCATAGTTCAGTAAGTATAGTGAAGGA 58.369 37.037 6.40 0.06 46.83 3.36
3785 3890 4.623932 ACCTCAGCAGACAATAAGTTCA 57.376 40.909 0.00 0.00 0.00 3.18
3871 3976 0.818296 ACCCACTCGACATAGCTCAC 59.182 55.000 0.00 0.00 0.00 3.51
3991 4096 0.752009 TCTACAGAGGGCTACCAGCG 60.752 60.000 0.00 0.00 43.62 5.18
3994 4099 3.141488 AGAGGGCTACCAGCGTCG 61.141 66.667 0.00 0.00 43.62 5.12
4177 4282 1.793258 GGAGGATGATGATGCAGTCG 58.207 55.000 0.00 0.00 0.00 4.18
4342 4447 4.899502 ACGAGGTGAAGAAGTTCATGAAT 58.100 39.130 12.12 0.00 44.58 2.57
4370 4475 6.660094 GGGTAGGTTGTGATAGGTATAGAGAG 59.340 46.154 0.00 0.00 0.00 3.20
4526 4743 1.002142 GTTCGCCACTAACCAACCAAC 60.002 52.381 0.00 0.00 0.00 3.77
4546 4767 3.887621 CTACAACTAGTAGCAAGGGCA 57.112 47.619 0.00 0.00 43.40 5.36
4555 4776 0.183492 TAGCAAGGGCATCATGGTCC 59.817 55.000 0.00 0.00 44.61 4.46
4608 4829 1.233019 TTTCGTTCCGTCTCTCTCGT 58.767 50.000 0.00 0.00 0.00 4.18
4615 4840 0.110147 CCGTCTCTCTCGTGTGTGAC 60.110 60.000 10.19 10.19 0.00 3.67
4669 4898 0.947244 GTGTGCTTTCTGGTGGTGAG 59.053 55.000 0.00 0.00 0.00 3.51
4683 4912 2.104281 GTGGTGAGGTTGGAACTACACT 59.896 50.000 14.21 0.00 36.27 3.55
4768 5013 3.346426 GGTGCAGGACCTTTGTCAT 57.654 52.632 3.25 0.00 43.65 3.06
4886 5279 9.454859 AAACCATGGTTTTTGTTCTCATTTAAA 57.545 25.926 32.77 0.00 44.84 1.52
4887 5280 8.432110 ACCATGGTTTTTGTTCTCATTTAAAC 57.568 30.769 13.00 0.00 0.00 2.01
4888 5281 8.264347 ACCATGGTTTTTGTTCTCATTTAAACT 58.736 29.630 13.00 0.00 0.00 2.66
4917 5310 8.967664 ACTAAAACCATGACAAGTAGTGTTTA 57.032 30.769 0.00 0.00 41.96 2.01
4939 5402 0.266152 ATCCGTTCCTCCCTCTCCAT 59.734 55.000 0.00 0.00 0.00 3.41
4995 5458 5.507817 CCGTGCCATAGATATGCACAAAAAT 60.508 40.000 13.47 0.00 38.96 1.82
5005 5468 8.693542 AGATATGCACAAAAATAAAAGACAGC 57.306 30.769 0.00 0.00 0.00 4.40
5012 5475 7.339953 CACAAAAATAAAAGACAGCTGCTTTC 58.660 34.615 25.85 13.74 34.68 2.62
5041 5504 6.426980 CAGAAAATGCAGCTACAAGTGATA 57.573 37.500 0.00 0.00 0.00 2.15
5051 5539 6.344500 CAGCTACAAGTGATATCCAAAGTCT 58.656 40.000 0.00 0.00 0.00 3.24
5122 5610 1.063764 ACGCGTAGAGTCTCCGATTTC 59.936 52.381 11.67 0.00 33.29 2.17
5133 5621 1.189524 TCCGATTTCACCCTCCACGT 61.190 55.000 0.00 0.00 0.00 4.49
5134 5622 0.739813 CCGATTTCACCCTCCACGTC 60.740 60.000 0.00 0.00 0.00 4.34
5136 5624 0.739813 GATTTCACCCTCCACGTCGG 60.740 60.000 0.00 0.00 0.00 4.79
5138 5626 2.091102 TTTCACCCTCCACGTCGGAC 62.091 60.000 0.00 0.00 39.64 4.79
5142 5630 2.258591 CCTCCACGTCGGACAGTG 59.741 66.667 19.25 19.25 39.64 3.66
5143 5631 2.561956 CCTCCACGTCGGACAGTGT 61.562 63.158 22.17 0.00 39.64 3.55
5144 5632 1.362717 CTCCACGTCGGACAGTGTT 59.637 57.895 22.17 0.00 39.64 3.32
5145 5633 0.663568 CTCCACGTCGGACAGTGTTC 60.664 60.000 22.17 0.00 39.64 3.18
5146 5634 1.663702 CCACGTCGGACAGTGTTCC 60.664 63.158 22.17 0.00 36.69 3.62
5147 5635 1.066752 CACGTCGGACAGTGTTCCA 59.933 57.895 18.45 0.00 35.04 3.53
5148 5636 0.939577 CACGTCGGACAGTGTTCCAG 60.940 60.000 18.45 0.00 35.04 3.86
5149 5637 1.362717 CGTCGGACAGTGTTCCAGT 59.637 57.895 9.10 0.00 35.04 4.00
5150 5638 0.249322 CGTCGGACAGTGTTCCAGTT 60.249 55.000 9.10 0.00 35.04 3.16
5152 5640 2.285977 GTCGGACAGTGTTCCAGTTTT 58.714 47.619 2.62 0.00 35.04 2.43
5153 5641 2.031683 GTCGGACAGTGTTCCAGTTTTG 59.968 50.000 2.62 0.00 35.04 2.44
5160 5648 6.405397 GGACAGTGTTCCAGTTTTGTAAACAT 60.405 38.462 0.00 0.00 35.49 2.71
5192 5680 6.655078 AAAGGTTTAATCACAGCAGACATT 57.345 33.333 0.00 0.00 0.00 2.71
5200 5688 4.508461 TCACAGCAGACATTGATTTTGG 57.492 40.909 0.00 0.00 0.00 3.28
5253 5741 3.855858 TGAAACCAGTGAAACCAAAAGC 58.144 40.909 0.00 0.00 37.80 3.51
5254 5742 3.513515 TGAAACCAGTGAAACCAAAAGCT 59.486 39.130 0.00 0.00 37.80 3.74
5258 5746 2.609002 CCAGTGAAACCAAAAGCTTTGC 59.391 45.455 13.54 0.00 37.80 3.68
5290 5793 4.439057 TCGACACAAGTTTAGTTTCAGCT 58.561 39.130 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.915078 ATGGCTACCTGGACAGCACC 61.915 60.000 20.86 9.57 39.63 5.01
1 2 0.745845 CATGGCTACCTGGACAGCAC 60.746 60.000 20.86 13.34 39.63 4.40
2 3 1.603842 CATGGCTACCTGGACAGCA 59.396 57.895 20.86 11.22 39.63 4.41
3 4 1.153086 CCATGGCTACCTGGACAGC 60.153 63.158 14.12 14.12 34.24 4.40
4 5 0.467384 CTCCATGGCTACCTGGACAG 59.533 60.000 6.96 0.00 36.63 3.51
5 6 0.982852 CCTCCATGGCTACCTGGACA 60.983 60.000 6.96 0.00 36.63 4.02
6 7 0.983378 ACCTCCATGGCTACCTGGAC 60.983 60.000 6.96 0.00 36.63 4.02
7 8 0.253160 AACCTCCATGGCTACCTGGA 60.253 55.000 6.96 0.00 39.23 3.86
8 9 0.107017 CAACCTCCATGGCTACCTGG 60.107 60.000 6.96 4.66 40.22 4.45
9 10 0.107017 CCAACCTCCATGGCTACCTG 60.107 60.000 6.96 0.26 40.22 4.00
10 11 2.311287 CCAACCTCCATGGCTACCT 58.689 57.895 6.96 0.00 40.22 3.08
11 12 4.986467 CCAACCTCCATGGCTACC 57.014 61.111 6.96 0.00 40.22 3.18
21 22 4.770874 TTAGCCGGCGCCAACCTC 62.771 66.667 28.98 9.75 34.57 3.85
22 23 4.778143 CTTAGCCGGCGCCAACCT 62.778 66.667 28.98 20.37 34.57 3.50
23 24 4.770874 TCTTAGCCGGCGCCAACC 62.771 66.667 28.98 13.73 34.57 3.77
24 25 3.497031 GTCTTAGCCGGCGCCAAC 61.497 66.667 28.98 17.96 34.57 3.77
28 29 3.849953 CAACGTCTTAGCCGGCGC 61.850 66.667 23.20 9.27 0.00 6.53
29 30 3.849953 GCAACGTCTTAGCCGGCG 61.850 66.667 23.20 7.22 0.00 6.46
30 31 3.497031 GGCAACGTCTTAGCCGGC 61.497 66.667 21.89 21.89 38.86 6.13
50 51 3.411114 ATGCTGTGGGGAGGCATCG 62.411 63.158 0.00 0.00 42.07 3.84
51 52 1.826921 CATGCTGTGGGGAGGCATC 60.827 63.158 0.00 0.00 43.62 3.91
52 53 1.866483 TTCATGCTGTGGGGAGGCAT 61.866 55.000 0.00 0.00 45.91 4.40
53 54 2.488771 CTTCATGCTGTGGGGAGGCA 62.489 60.000 0.00 0.00 40.32 4.75
54 55 1.751927 CTTCATGCTGTGGGGAGGC 60.752 63.158 0.00 0.00 0.00 4.70
55 56 0.038744 AACTTCATGCTGTGGGGAGG 59.961 55.000 0.00 0.00 0.00 4.30
56 57 1.171308 CAACTTCATGCTGTGGGGAG 58.829 55.000 0.00 0.00 0.00 4.30
57 58 0.478072 ACAACTTCATGCTGTGGGGA 59.522 50.000 0.00 0.00 0.00 4.81
58 59 0.599558 CACAACTTCATGCTGTGGGG 59.400 55.000 8.38 0.00 38.65 4.96
61 62 0.386352 CGCCACAACTTCATGCTGTG 60.386 55.000 9.00 9.00 41.13 3.66
62 63 1.518056 CCGCCACAACTTCATGCTGT 61.518 55.000 0.00 0.00 0.00 4.40
63 64 1.210931 CCGCCACAACTTCATGCTG 59.789 57.895 0.00 0.00 0.00 4.41
64 65 2.629656 GCCGCCACAACTTCATGCT 61.630 57.895 0.00 0.00 0.00 3.79
65 66 2.126346 GCCGCCACAACTTCATGC 60.126 61.111 0.00 0.00 0.00 4.06
66 67 1.804396 TTGGCCGCCACAACTTCATG 61.804 55.000 13.00 0.00 30.78 3.07
67 68 1.526575 CTTGGCCGCCACAACTTCAT 61.527 55.000 13.00 0.00 30.78 2.57
68 69 2.124109 TTGGCCGCCACAACTTCA 60.124 55.556 13.00 0.00 30.78 3.02
69 70 2.644992 CTTGGCCGCCACAACTTC 59.355 61.111 13.00 0.00 30.78 3.01
70 71 2.912025 CCTTGGCCGCCACAACTT 60.912 61.111 13.00 0.00 30.78 2.66
81 82 4.162690 ATCTCCGTCCGCCTTGGC 62.163 66.667 0.75 0.75 37.80 4.52
82 83 2.107141 GATCTCCGTCCGCCTTGG 59.893 66.667 0.00 0.00 40.09 3.61
83 84 2.278857 CGATCTCCGTCCGCCTTG 60.279 66.667 0.00 0.00 0.00 3.61
84 85 4.208686 GCGATCTCCGTCCGCCTT 62.209 66.667 0.00 0.00 42.77 4.35
88 89 1.138883 TTTCAGCGATCTCCGTCCG 59.861 57.895 0.00 0.00 41.15 4.79
89 90 0.108804 TGTTTCAGCGATCTCCGTCC 60.109 55.000 0.00 0.00 41.15 4.79
90 91 1.272781 CTGTTTCAGCGATCTCCGTC 58.727 55.000 0.00 0.00 41.15 4.79
91 92 3.425578 CTGTTTCAGCGATCTCCGT 57.574 52.632 0.00 0.00 41.15 4.69
101 102 2.856032 CCGCACTCGCTGTTTCAG 59.144 61.111 0.00 0.00 35.30 3.02
102 103 3.345808 GCCGCACTCGCTGTTTCA 61.346 61.111 0.00 0.00 35.30 2.69
103 104 4.430423 CGCCGCACTCGCTGTTTC 62.430 66.667 0.00 0.00 35.30 2.78
135 136 4.498520 ACCATCACCTCGCTCGCG 62.499 66.667 0.00 0.00 41.35 5.87
136 137 2.887568 CACCATCACCTCGCTCGC 60.888 66.667 0.00 0.00 0.00 5.03
137 138 2.887568 GCACCATCACCTCGCTCG 60.888 66.667 0.00 0.00 0.00 5.03
138 139 2.512515 GGCACCATCACCTCGCTC 60.513 66.667 0.00 0.00 0.00 5.03
139 140 4.457496 CGGCACCATCACCTCGCT 62.457 66.667 0.00 0.00 0.00 4.93
140 141 4.451150 TCGGCACCATCACCTCGC 62.451 66.667 0.00 0.00 0.00 5.03
141 142 2.509336 GTCGGCACCATCACCTCG 60.509 66.667 0.00 0.00 0.00 4.63
142 143 2.509336 CGTCGGCACCATCACCTC 60.509 66.667 0.00 0.00 0.00 3.85
143 144 2.879233 AACGTCGGCACCATCACCT 61.879 57.895 0.00 0.00 0.00 4.00
144 145 2.358247 AACGTCGGCACCATCACC 60.358 61.111 0.00 0.00 0.00 4.02
145 146 1.503818 AACAACGTCGGCACCATCAC 61.504 55.000 0.00 0.00 0.00 3.06
146 147 1.227704 AACAACGTCGGCACCATCA 60.228 52.632 0.00 0.00 0.00 3.07
147 148 1.206578 CAACAACGTCGGCACCATC 59.793 57.895 0.00 0.00 0.00 3.51
148 149 2.258013 CCAACAACGTCGGCACCAT 61.258 57.895 0.00 0.00 0.00 3.55
149 150 2.897846 CCAACAACGTCGGCACCA 60.898 61.111 0.00 0.00 0.00 4.17
150 151 2.589442 TCCAACAACGTCGGCACC 60.589 61.111 0.00 0.00 0.00 5.01
151 152 1.557443 CTCTCCAACAACGTCGGCAC 61.557 60.000 0.00 0.00 0.00 5.01
152 153 1.300620 CTCTCCAACAACGTCGGCA 60.301 57.895 0.00 0.00 0.00 5.69
153 154 2.668280 GCTCTCCAACAACGTCGGC 61.668 63.158 0.00 0.00 0.00 5.54
154 155 2.372690 CGCTCTCCAACAACGTCGG 61.373 63.158 0.00 0.00 0.00 4.79
155 156 0.937699 TTCGCTCTCCAACAACGTCG 60.938 55.000 0.00 0.00 0.00 5.12
156 157 1.192534 CTTTCGCTCTCCAACAACGTC 59.807 52.381 0.00 0.00 0.00 4.34
157 158 1.217882 CTTTCGCTCTCCAACAACGT 58.782 50.000 0.00 0.00 0.00 3.99
158 159 0.512952 CCTTTCGCTCTCCAACAACG 59.487 55.000 0.00 0.00 0.00 4.10
159 160 0.875059 CCCTTTCGCTCTCCAACAAC 59.125 55.000 0.00 0.00 0.00 3.32
160 161 0.889186 GCCCTTTCGCTCTCCAACAA 60.889 55.000 0.00 0.00 0.00 2.83
161 162 1.302511 GCCCTTTCGCTCTCCAACA 60.303 57.895 0.00 0.00 0.00 3.33
162 163 2.391389 CGCCCTTTCGCTCTCCAAC 61.391 63.158 0.00 0.00 0.00 3.77
163 164 2.047274 CGCCCTTTCGCTCTCCAA 60.047 61.111 0.00 0.00 0.00 3.53
164 165 4.082523 CCGCCCTTTCGCTCTCCA 62.083 66.667 0.00 0.00 0.00 3.86
165 166 4.083862 ACCGCCCTTTCGCTCTCC 62.084 66.667 0.00 0.00 0.00 3.71
166 167 2.815647 CACCGCCCTTTCGCTCTC 60.816 66.667 0.00 0.00 0.00 3.20
167 168 4.394712 CCACCGCCCTTTCGCTCT 62.395 66.667 0.00 0.00 0.00 4.09
226 227 4.864334 CCTGCTCCATCCGCCACC 62.864 72.222 0.00 0.00 0.00 4.61
269 270 1.674057 GGATCAGATAGCCACCGGG 59.326 63.158 6.32 0.00 32.17 5.73
270 271 1.121407 TGGGATCAGATAGCCACCGG 61.121 60.000 0.00 0.00 34.26 5.28
271 272 0.758734 TTGGGATCAGATAGCCACCG 59.241 55.000 0.00 0.00 34.26 4.94
272 273 1.771255 ACTTGGGATCAGATAGCCACC 59.229 52.381 0.00 0.00 34.26 4.61
273 274 3.118261 TCAACTTGGGATCAGATAGCCAC 60.118 47.826 0.00 0.00 34.26 5.01
274 275 3.114606 TCAACTTGGGATCAGATAGCCA 58.885 45.455 0.00 0.00 34.26 4.75
275 276 3.845781 TCAACTTGGGATCAGATAGCC 57.154 47.619 0.00 0.00 0.00 3.93
276 277 5.028549 TCTTCAACTTGGGATCAGATAGC 57.971 43.478 0.00 0.00 0.00 2.97
277 278 5.130145 ACCTCTTCAACTTGGGATCAGATAG 59.870 44.000 0.00 0.00 0.00 2.08
278 279 5.032846 ACCTCTTCAACTTGGGATCAGATA 58.967 41.667 0.00 0.00 0.00 1.98
279 280 3.848975 ACCTCTTCAACTTGGGATCAGAT 59.151 43.478 0.00 0.00 0.00 2.90
280 281 3.251484 ACCTCTTCAACTTGGGATCAGA 58.749 45.455 0.00 0.00 0.00 3.27
281 282 3.710209 ACCTCTTCAACTTGGGATCAG 57.290 47.619 0.00 0.00 0.00 2.90
282 283 3.519510 CCTACCTCTTCAACTTGGGATCA 59.480 47.826 0.00 0.00 0.00 2.92
283 284 3.519913 ACCTACCTCTTCAACTTGGGATC 59.480 47.826 0.00 0.00 0.00 3.36
284 285 3.532102 ACCTACCTCTTCAACTTGGGAT 58.468 45.455 0.00 0.00 0.00 3.85
285 286 2.986050 ACCTACCTCTTCAACTTGGGA 58.014 47.619 0.00 0.00 0.00 4.37
286 287 3.790089 AACCTACCTCTTCAACTTGGG 57.210 47.619 0.00 0.00 0.00 4.12
287 288 5.246307 CCTAAACCTACCTCTTCAACTTGG 58.754 45.833 0.00 0.00 0.00 3.61
288 289 5.221864 ACCCTAAACCTACCTCTTCAACTTG 60.222 44.000 0.00 0.00 0.00 3.16
289 290 4.912133 ACCCTAAACCTACCTCTTCAACTT 59.088 41.667 0.00 0.00 0.00 2.66
290 291 4.500452 ACCCTAAACCTACCTCTTCAACT 58.500 43.478 0.00 0.00 0.00 3.16
291 292 4.904895 ACCCTAAACCTACCTCTTCAAC 57.095 45.455 0.00 0.00 0.00 3.18
292 293 5.917545 AAACCCTAAACCTACCTCTTCAA 57.082 39.130 0.00 0.00 0.00 2.69
293 294 5.627135 CAAAACCCTAAACCTACCTCTTCA 58.373 41.667 0.00 0.00 0.00 3.02
294 295 4.458295 GCAAAACCCTAAACCTACCTCTTC 59.542 45.833 0.00 0.00 0.00 2.87
295 296 4.404640 GCAAAACCCTAAACCTACCTCTT 58.595 43.478 0.00 0.00 0.00 2.85
296 297 3.558533 CGCAAAACCCTAAACCTACCTCT 60.559 47.826 0.00 0.00 0.00 3.69
297 298 2.745821 CGCAAAACCCTAAACCTACCTC 59.254 50.000 0.00 0.00 0.00 3.85
298 299 2.107031 ACGCAAAACCCTAAACCTACCT 59.893 45.455 0.00 0.00 0.00 3.08
299 300 2.227149 CACGCAAAACCCTAAACCTACC 59.773 50.000 0.00 0.00 0.00 3.18
300 301 2.227149 CCACGCAAAACCCTAAACCTAC 59.773 50.000 0.00 0.00 0.00 3.18
301 302 2.506444 CCACGCAAAACCCTAAACCTA 58.494 47.619 0.00 0.00 0.00 3.08
302 303 1.324383 CCACGCAAAACCCTAAACCT 58.676 50.000 0.00 0.00 0.00 3.50
303 304 0.315886 CCCACGCAAAACCCTAAACC 59.684 55.000 0.00 0.00 0.00 3.27
304 305 1.034356 ACCCACGCAAAACCCTAAAC 58.966 50.000 0.00 0.00 0.00 2.01
305 306 1.033574 CACCCACGCAAAACCCTAAA 58.966 50.000 0.00 0.00 0.00 1.85
306 307 0.824182 CCACCCACGCAAAACCCTAA 60.824 55.000 0.00 0.00 0.00 2.69
307 308 1.228306 CCACCCACGCAAAACCCTA 60.228 57.895 0.00 0.00 0.00 3.53
308 309 2.520741 CCACCCACGCAAAACCCT 60.521 61.111 0.00 0.00 0.00 4.34
309 310 4.293648 GCCACCCACGCAAAACCC 62.294 66.667 0.00 0.00 0.00 4.11
310 311 1.457009 TTAGCCACCCACGCAAAACC 61.457 55.000 0.00 0.00 0.00 3.27
311 312 0.318360 GTTAGCCACCCACGCAAAAC 60.318 55.000 0.00 0.00 0.00 2.43
312 313 0.752009 TGTTAGCCACCCACGCAAAA 60.752 50.000 0.00 0.00 0.00 2.44
313 314 0.538516 ATGTTAGCCACCCACGCAAA 60.539 50.000 0.00 0.00 0.00 3.68
314 315 0.958382 GATGTTAGCCACCCACGCAA 60.958 55.000 0.00 0.00 0.00 4.85
315 316 1.376683 GATGTTAGCCACCCACGCA 60.377 57.895 0.00 0.00 0.00 5.24
316 317 2.112815 GGATGTTAGCCACCCACGC 61.113 63.158 0.00 0.00 0.00 5.34
317 318 0.744414 CTGGATGTTAGCCACCCACG 60.744 60.000 0.00 0.00 0.00 4.94
318 319 1.032114 GCTGGATGTTAGCCACCCAC 61.032 60.000 0.00 0.00 35.15 4.61
319 320 1.302949 GCTGGATGTTAGCCACCCA 59.697 57.895 0.00 0.00 35.15 4.51
320 321 4.242602 GCTGGATGTTAGCCACCC 57.757 61.111 0.00 0.00 35.15 4.61
325 326 0.108138 ACGTGAGGCTGGATGTTAGC 60.108 55.000 0.00 0.00 40.41 3.09
326 327 1.799181 CGACGTGAGGCTGGATGTTAG 60.799 57.143 0.00 0.00 36.51 2.34
327 328 0.172578 CGACGTGAGGCTGGATGTTA 59.827 55.000 0.00 0.00 36.51 2.41
328 329 1.079819 CGACGTGAGGCTGGATGTT 60.080 57.895 0.00 0.00 36.51 2.71
329 330 2.573869 CGACGTGAGGCTGGATGT 59.426 61.111 0.00 0.00 36.51 3.06
330 331 2.887568 GCGACGTGAGGCTGGATG 60.888 66.667 0.00 0.00 36.51 3.51
331 332 2.244117 ATTGCGACGTGAGGCTGGAT 62.244 55.000 0.00 0.00 36.51 3.41
332 333 1.600511 TATTGCGACGTGAGGCTGGA 61.601 55.000 0.00 0.00 36.51 3.86
333 334 0.530650 ATATTGCGACGTGAGGCTGG 60.531 55.000 0.00 0.00 36.51 4.85
334 335 2.134201 TATATTGCGACGTGAGGCTG 57.866 50.000 0.00 0.00 36.51 4.85
335 336 3.756963 TCTATATATTGCGACGTGAGGCT 59.243 43.478 0.00 0.00 36.51 4.58
336 337 4.092771 TCTATATATTGCGACGTGAGGC 57.907 45.455 0.00 0.00 0.00 4.70
337 338 5.880341 TCATCTATATATTGCGACGTGAGG 58.120 41.667 0.00 0.00 0.00 3.86
338 339 7.189512 TGATCATCTATATATTGCGACGTGAG 58.810 38.462 0.00 0.00 0.00 3.51
339 340 7.065803 TCTGATCATCTATATATTGCGACGTGA 59.934 37.037 0.00 0.00 0.00 4.35
340 341 7.189512 TCTGATCATCTATATATTGCGACGTG 58.810 38.462 0.00 0.00 0.00 4.49
341 342 7.321745 TCTGATCATCTATATATTGCGACGT 57.678 36.000 0.00 0.00 0.00 4.34
342 343 8.794308 ATTCTGATCATCTATATATTGCGACG 57.206 34.615 0.00 0.00 0.00 5.12
388 389 9.664332 GGTCTAGCATATTGTTATTCTGATCAT 57.336 33.333 0.00 0.00 0.00 2.45
389 390 8.097038 GGGTCTAGCATATTGTTATTCTGATCA 58.903 37.037 0.00 0.00 0.00 2.92
390 391 8.317679 AGGGTCTAGCATATTGTTATTCTGATC 58.682 37.037 0.00 0.00 0.00 2.92
391 392 8.212259 AGGGTCTAGCATATTGTTATTCTGAT 57.788 34.615 0.00 0.00 0.00 2.90
392 393 7.618019 AGGGTCTAGCATATTGTTATTCTGA 57.382 36.000 0.00 0.00 0.00 3.27
393 394 9.950496 AATAGGGTCTAGCATATTGTTATTCTG 57.050 33.333 0.00 0.00 0.00 3.02
399 400 9.914834 TTGTAAAATAGGGTCTAGCATATTGTT 57.085 29.630 0.44 1.57 0.00 2.83
400 401 9.914834 TTTGTAAAATAGGGTCTAGCATATTGT 57.085 29.630 0.44 0.00 0.00 2.71
404 405 9.969001 ACTTTTTGTAAAATAGGGTCTAGCATA 57.031 29.630 0.00 0.00 0.00 3.14
405 406 8.879427 ACTTTTTGTAAAATAGGGTCTAGCAT 57.121 30.769 0.00 0.00 0.00 3.79
406 407 8.700439 AACTTTTTGTAAAATAGGGTCTAGCA 57.300 30.769 0.00 0.00 0.00 3.49
407 408 9.976511 AAAACTTTTTGTAAAATAGGGTCTAGC 57.023 29.630 0.00 0.00 0.00 3.42
418 419 9.326413 TGTGAGGTTTCAAAACTTTTTGTAAAA 57.674 25.926 12.91 5.97 45.77 1.52
419 420 8.888579 TGTGAGGTTTCAAAACTTTTTGTAAA 57.111 26.923 12.91 9.76 45.77 2.01
420 421 8.930760 CATGTGAGGTTTCAAAACTTTTTGTAA 58.069 29.630 12.91 8.03 45.77 2.41
421 422 8.307483 TCATGTGAGGTTTCAAAACTTTTTGTA 58.693 29.630 12.91 2.56 45.77 2.41
422 423 7.117667 GTCATGTGAGGTTTCAAAACTTTTTGT 59.882 33.333 12.91 0.00 45.77 2.83
423 424 7.117523 TGTCATGTGAGGTTTCAAAACTTTTTG 59.882 33.333 7.95 7.95 46.70 2.44
424 425 7.158021 TGTCATGTGAGGTTTCAAAACTTTTT 58.842 30.769 5.66 0.00 38.89 1.94
459 460 3.309436 TTGCGCGTGCCTGGACTAT 62.309 57.895 19.87 0.00 41.78 2.12
460 461 3.932580 CTTGCGCGTGCCTGGACTA 62.933 63.158 19.87 0.00 41.78 2.59
485 486 2.992114 AGAGTGGAAGCCGCGTCT 60.992 61.111 4.92 0.00 39.30 4.18
512 513 1.664649 CGTGTGTCGCAGTCATGGT 60.665 57.895 0.00 0.00 0.00 3.55
522 523 2.736343 TAACGGAGGTGCGTGTGTCG 62.736 60.000 0.00 0.00 43.12 4.35
549 550 6.625362 CGGATATGCTGACTTGTATACATCT 58.375 40.000 6.36 0.00 0.00 2.90
553 554 3.927142 GGCGGATATGCTGACTTGTATAC 59.073 47.826 0.00 0.00 34.52 1.47
556 559 1.760029 TGGCGGATATGCTGACTTGTA 59.240 47.619 0.00 0.00 34.52 2.41
568 571 0.689412 TGGTGTGAGGATGGCGGATA 60.689 55.000 0.00 0.00 0.00 2.59
572 575 0.888736 TTTGTGGTGTGAGGATGGCG 60.889 55.000 0.00 0.00 0.00 5.69
579 582 6.381801 GGTTTTCAGATATTTGTGGTGTGAG 58.618 40.000 0.00 0.00 0.00 3.51
580 583 5.242838 GGGTTTTCAGATATTTGTGGTGTGA 59.757 40.000 0.00 0.00 0.00 3.58
605 616 3.498397 TGACGACTTGGCTGAATTTCTTC 59.502 43.478 0.00 0.00 0.00 2.87
623 634 2.031944 TCACTCACTCGTTCTTCTGACG 60.032 50.000 0.00 0.00 0.00 4.35
626 637 4.550422 TGAATCACTCACTCGTTCTTCTG 58.450 43.478 0.00 0.00 0.00 3.02
641 652 3.025322 TCCTCCTCTCCTCTGAATCAC 57.975 52.381 0.00 0.00 0.00 3.06
642 653 3.765432 TTCCTCCTCTCCTCTGAATCA 57.235 47.619 0.00 0.00 0.00 2.57
643 654 5.011635 GGTAATTCCTCCTCTCCTCTGAATC 59.988 48.000 0.00 0.00 0.00 2.52
644 655 4.904853 GGTAATTCCTCCTCTCCTCTGAAT 59.095 45.833 0.00 0.00 0.00 2.57
645 656 4.290942 GGTAATTCCTCCTCTCCTCTGAA 58.709 47.826 0.00 0.00 0.00 3.02
648 659 2.425102 CCGGTAATTCCTCCTCTCCTCT 60.425 54.545 0.00 0.00 0.00 3.69
659 670 1.219522 CCGTGATCGCCGGTAATTCC 61.220 60.000 13.84 0.00 40.59 3.01
668 679 4.819761 TCAGCTGCCGTGATCGCC 62.820 66.667 9.47 0.00 35.54 5.54
672 683 1.375140 CACTGTCAGCTGCCGTGAT 60.375 57.895 20.03 0.00 0.00 3.06
716 727 3.449018 GTGCTCTCTGTCTATCCTTTGGA 59.551 47.826 0.00 0.00 35.55 3.53
717 728 3.736433 CGTGCTCTCTGTCTATCCTTTGG 60.736 52.174 0.00 0.00 0.00 3.28
718 729 3.443037 CGTGCTCTCTGTCTATCCTTTG 58.557 50.000 0.00 0.00 0.00 2.77
719 730 2.159170 GCGTGCTCTCTGTCTATCCTTT 60.159 50.000 0.00 0.00 0.00 3.11
720 731 1.407258 GCGTGCTCTCTGTCTATCCTT 59.593 52.381 0.00 0.00 0.00 3.36
721 732 1.028905 GCGTGCTCTCTGTCTATCCT 58.971 55.000 0.00 0.00 0.00 3.24
722 733 0.031449 GGCGTGCTCTCTGTCTATCC 59.969 60.000 0.00 0.00 0.00 2.59
778 793 2.661866 GCGTTGCGTGTCTGGAGT 60.662 61.111 0.00 0.00 0.00 3.85
783 798 4.293626 GCGTTGCGTTGCGTGTCT 62.294 61.111 0.00 0.00 0.00 3.41
819 834 2.516888 CGGGTATTCGGGATGGGCT 61.517 63.158 0.00 0.00 0.00 5.19
840 863 1.005748 GGGCGATGATGATGAGCGA 60.006 57.895 0.00 0.00 0.00 4.93
899 930 3.047877 GTGGGTCGCTTCGGTTGG 61.048 66.667 0.00 0.00 0.00 3.77
901 932 4.675029 CGGTGGGTCGCTTCGGTT 62.675 66.667 0.00 0.00 0.00 4.44
903 934 4.796231 CTCGGTGGGTCGCTTCGG 62.796 72.222 0.00 0.00 0.00 4.30
1041 1096 4.271816 CCATCCTCCGCCGACGAG 62.272 72.222 0.00 0.00 43.93 4.18
1369 1424 0.340208 GGAGAAGGGGGAGAGAAGGA 59.660 60.000 0.00 0.00 0.00 3.36
1371 1426 2.115427 GAAGGAGAAGGGGGAGAGAAG 58.885 57.143 0.00 0.00 0.00 2.85
1373 1428 1.398799 AGAAGGAGAAGGGGGAGAGA 58.601 55.000 0.00 0.00 0.00 3.10
1375 1430 1.273896 GGAAGAAGGAGAAGGGGGAGA 60.274 57.143 0.00 0.00 0.00 3.71
1398 1455 0.528924 GTAAAACGGGGTTGGGATGC 59.471 55.000 0.00 0.00 0.00 3.91
1399 1456 1.816224 CAGTAAAACGGGGTTGGGATG 59.184 52.381 0.00 0.00 0.00 3.51
1400 1457 1.272258 CCAGTAAAACGGGGTTGGGAT 60.272 52.381 0.00 0.00 29.33 3.85
1411 1468 4.782019 TCATCAACATGCCCAGTAAAAC 57.218 40.909 0.00 0.00 0.00 2.43
1421 1478 5.434352 AATGCTACTGATCATCAACATGC 57.566 39.130 0.00 0.00 0.00 4.06
1423 1480 6.124340 TGGAAATGCTACTGATCATCAACAT 58.876 36.000 0.00 0.00 0.00 2.71
1424 1481 5.499313 TGGAAATGCTACTGATCATCAACA 58.501 37.500 0.00 0.00 0.00 3.33
1442 1499 0.938713 ACGACGCAACGAAATGGAAA 59.061 45.000 6.54 0.00 37.03 3.13
1445 1502 1.314581 GAAACGACGCAACGAAATGG 58.685 50.000 6.54 0.00 37.03 3.16
1488 1555 1.344942 AAACACTGACGAGATCGCGC 61.345 55.000 19.16 11.94 44.43 6.86
1522 1591 0.322997 AAACGATCCCCAAATCCGCA 60.323 50.000 0.00 0.00 0.00 5.69
1541 1610 5.047802 GGATCAATCAAGCAAGGAACTGAAA 60.048 40.000 0.00 0.00 40.86 2.69
1542 1611 4.460382 GGATCAATCAAGCAAGGAACTGAA 59.540 41.667 0.00 0.00 40.86 3.02
1546 1615 3.119352 GGTGGATCAATCAAGCAAGGAAC 60.119 47.826 0.00 0.00 0.00 3.62
1550 1619 3.087031 AGTGGTGGATCAATCAAGCAAG 58.913 45.455 0.95 0.00 39.69 4.01
1552 1621 2.821378 CAAGTGGTGGATCAATCAAGCA 59.179 45.455 0.00 0.00 35.98 3.91
1560 1629 1.408683 GGCATAGCAAGTGGTGGATCA 60.409 52.381 0.00 0.00 0.00 2.92
1564 1633 1.475751 CCTAGGCATAGCAAGTGGTGG 60.476 57.143 0.00 0.00 0.00 4.61
1566 1635 1.879575 TCCTAGGCATAGCAAGTGGT 58.120 50.000 2.96 0.00 0.00 4.16
1567 1636 2.551721 CCATCCTAGGCATAGCAAGTGG 60.552 54.545 2.96 1.51 0.00 4.00
1568 1637 2.105477 ACCATCCTAGGCATAGCAAGTG 59.895 50.000 2.96 0.00 0.00 3.16
1569 1638 2.412591 ACCATCCTAGGCATAGCAAGT 58.587 47.619 2.96 0.00 0.00 3.16
1576 1645 3.559069 CATCACAAACCATCCTAGGCAT 58.441 45.455 2.96 0.00 0.00 4.40
1580 1649 3.003394 TGGCATCACAAACCATCCTAG 57.997 47.619 0.00 0.00 0.00 3.02
1584 1653 1.205417 CCCTTGGCATCACAAACCATC 59.795 52.381 0.00 0.00 32.39 3.51
1588 1657 1.909700 TCTCCCTTGGCATCACAAAC 58.090 50.000 0.00 0.00 0.00 2.93
1602 1671 0.179054 GGCCGGACTTGTAATCTCCC 60.179 60.000 5.05 0.00 0.00 4.30
1610 1679 2.047274 CGACATGGCCGGACTTGT 60.047 61.111 27.77 27.77 0.00 3.16
1611 1680 1.671054 AACGACATGGCCGGACTTG 60.671 57.895 21.19 21.19 0.00 3.16
1613 1682 2.047274 CAACGACATGGCCGGACT 60.047 61.111 9.82 0.00 0.00 3.85
1726 1799 3.649073 TGTCAGTAAAGACATGTCACGG 58.351 45.455 27.02 16.66 43.18 4.94
1727 1800 4.506288 TGTTGTCAGTAAAGACATGTCACG 59.494 41.667 27.02 12.66 46.90 4.35
1786 1859 1.406069 GCAGACATTCATCCGTGGAGT 60.406 52.381 0.00 0.00 0.00 3.85
1813 1886 9.783081 ACTTTATTCTTTGATTCTTTGCCATTT 57.217 25.926 0.00 0.00 0.00 2.32
1929 2007 3.871594 ACAACTAGCCTATAAAAGCGCAG 59.128 43.478 11.47 0.00 0.00 5.18
1939 2017 9.780186 GTAAATGGAATTCTACAACTAGCCTAT 57.220 33.333 5.23 0.00 33.67 2.57
1969 2047 5.440610 ACCAAATAGATCTTAACCAGCCAG 58.559 41.667 0.00 0.00 0.00 4.85
2043 2126 5.874810 GGCTTACAAGACATCACTCATAACA 59.125 40.000 0.00 0.00 32.98 2.41
2060 2143 6.765989 AGATTTTCGCTATATGTTGGCTTACA 59.234 34.615 0.00 0.00 0.00 2.41
2103 2186 3.059166 GGCATGCAAAAAGTAGTTGGTG 58.941 45.455 21.36 0.00 0.00 4.17
2206 2292 3.788434 TCGTTTTGCGAGAAAGACATC 57.212 42.857 0.00 0.00 45.68 3.06
2235 2321 7.603024 TGATGACATCTGCTATCTTTCATGATC 59.397 37.037 16.25 0.00 0.00 2.92
2333 2419 6.632834 CAGAGAATTGTCGTTTTGTTACCTTG 59.367 38.462 0.00 0.00 0.00 3.61
2359 2445 5.524511 TCCGACAACATAACTTTTCATCG 57.475 39.130 0.00 0.00 0.00 3.84
2375 2461 2.758423 AGTACACACTGCATATCCGACA 59.242 45.455 0.00 0.00 32.25 4.35
2431 2517 5.185249 TGTTGAGACAAGACCTACTGGTATC 59.815 44.000 0.00 0.00 40.18 2.24
2442 2528 3.390135 TCCGTTCATGTTGAGACAAGAC 58.610 45.455 0.00 0.00 39.66 3.01
2538 2629 1.264288 GTGTCCTAACTGTGCACTTGC 59.736 52.381 19.41 0.00 42.50 4.01
2585 2676 5.659079 ACAACAAGGGATTTTTCAGGTAACA 59.341 36.000 0.00 0.00 41.41 2.41
2598 2689 3.019564 GCAAGAGCATACAACAAGGGAT 58.980 45.455 0.00 0.00 41.58 3.85
2608 2699 7.713073 ACCTAAAGAAGATTAGCAAGAGCATAC 59.287 37.037 0.00 0.00 45.49 2.39
2644 2735 2.029380 GGCCACTTGTTTGGTACCAATC 60.029 50.000 27.57 25.24 39.09 2.67
2656 2747 2.292828 ACAAGCAATAGGCCACTTGT 57.707 45.000 17.22 17.22 45.86 3.16
2707 2806 8.814235 GCAGATACGTGCTTCTAAACTTATTTA 58.186 33.333 0.00 0.00 40.54 1.40
2764 2863 6.380095 AACGGACATGCTTAACACTAAAAA 57.620 33.333 0.00 0.00 0.00 1.94
2774 2873 6.216801 ACTGAAGTATAACGGACATGCTTA 57.783 37.500 0.00 0.00 29.81 3.09
2783 2882 4.037858 ACCGCTAACTGAAGTATAACGG 57.962 45.455 10.68 10.68 43.52 4.44
2784 2883 6.020360 GGTAAACCGCTAACTGAAGTATAACG 60.020 42.308 0.00 0.00 0.00 3.18
2786 2885 6.934056 TGGTAAACCGCTAACTGAAGTATAA 58.066 36.000 0.00 0.00 39.43 0.98
2858 2957 6.767456 TGGAAACAAATAAATGAGCATGGTT 58.233 32.000 0.00 0.00 37.44 3.67
2935 3035 1.494721 AGAGAGCACCTCCAAAAACCA 59.505 47.619 2.95 0.00 42.97 3.67
2963 3063 6.665992 ATTTTCATGCCATCTCATTAGCAT 57.334 33.333 0.00 0.00 46.50 3.79
3024 3124 8.300286 TGTCTGTTTCTTGAGTTCTACTATGAG 58.700 37.037 0.00 0.00 0.00 2.90
3065 3165 8.301252 TGTATATTCACTTTCAGTAGCTGGTA 57.699 34.615 0.00 0.00 31.51 3.25
3105 3206 5.643348 TCACGCATTCATCACCAATATATCC 59.357 40.000 0.00 0.00 0.00 2.59
3122 3223 2.159338 GCAATTGACCATCTTCACGCAT 60.159 45.455 10.34 0.00 0.00 4.73
3168 3269 3.010420 GACCAGCTTGGGATAGAAACAC 58.990 50.000 0.00 0.00 43.37 3.32
3241 3342 2.006805 TGCATGAAACCCCATGACAA 57.993 45.000 7.94 0.00 44.98 3.18
3382 3483 3.806625 TCCCTATAACCGTGTGCTAAC 57.193 47.619 0.00 0.00 0.00 2.34
3391 3492 3.871594 CAGTTCTTGCTTCCCTATAACCG 59.128 47.826 0.00 0.00 0.00 4.44
3598 3700 6.245408 TCATGCTTGGACCTTTACATAACTT 58.755 36.000 0.00 0.00 0.00 2.66
3612 3714 1.523154 GGTGCGGTTTCATGCTTGGA 61.523 55.000 0.00 0.00 0.00 3.53
3785 3890 3.759581 AGTTGGTGAGAGCAATTGATGT 58.240 40.909 10.34 0.00 37.94 3.06
3835 3940 3.201266 GTGGGTAAATGATGACCAGGGTA 59.799 47.826 0.00 0.00 37.47 3.69
3838 3943 3.545703 GAGTGGGTAAATGATGACCAGG 58.454 50.000 0.00 0.00 37.47 4.45
4177 4282 3.564218 ATCTGCGCCTCCATCCCC 61.564 66.667 4.18 0.00 0.00 4.81
4342 4447 1.081513 ACCTATCACAACCTACCCCCA 59.918 52.381 0.00 0.00 0.00 4.96
4471 4583 5.345202 CAGTACTCGCCTACTACAAACAAAG 59.655 44.000 0.00 0.00 0.00 2.77
4546 4767 2.174210 CCACAATCTCTGGGACCATGAT 59.826 50.000 0.00 0.00 0.00 2.45
4608 4829 2.971660 TTGGAACTTCGAGTCACACA 57.028 45.000 0.00 0.00 0.00 3.72
4615 4840 4.093998 CAGTCAATCCATTGGAACTTCGAG 59.906 45.833 9.98 0.00 38.30 4.04
4669 4898 4.511826 CACTCTTTCAGTGTAGTTCCAACC 59.488 45.833 0.00 0.00 46.81 3.77
4758 5003 4.081406 TGAGCTAAATGCATGACAAAGGT 58.919 39.130 0.00 0.00 45.94 3.50
4768 5013 4.019792 TGAACTCCTTGAGCTAAATGCA 57.980 40.909 0.00 0.00 45.94 3.96
4773 5018 6.586344 CCTGATTATGAACTCCTTGAGCTAA 58.414 40.000 0.00 0.00 32.04 3.09
4886 5279 9.086758 ACTACTTGTCATGGTTTTAGTAGTAGT 57.913 33.333 17.45 0.00 43.69 2.73
4887 5280 9.355215 CACTACTTGTCATGGTTTTAGTAGTAG 57.645 37.037 18.02 0.00 43.69 2.57
4888 5281 8.863086 ACACTACTTGTCATGGTTTTAGTAGTA 58.137 33.333 18.02 0.00 43.69 1.82
4892 5285 7.875327 AAACACTACTTGTCATGGTTTTAGT 57.125 32.000 0.00 0.00 37.51 2.24
4917 5310 1.710816 GAGAGGGAGGAACGGATCAT 58.289 55.000 0.00 0.00 0.00 2.45
4939 5402 4.360951 AAGGAATGTTCGTTTGGAGGTA 57.639 40.909 0.00 0.00 31.89 3.08
4995 5458 4.083110 GCATCAGAAAGCAGCTGTCTTTTA 60.083 41.667 26.18 18.69 34.24 1.52
5032 5495 4.631813 GCGAAGACTTTGGATATCACTTGT 59.368 41.667 4.83 0.00 0.00 3.16
5041 5504 2.403252 AATCCGCGAAGACTTTGGAT 57.597 45.000 8.23 10.26 41.09 3.41
5051 5539 4.628333 CAGGAAAAGTTAGTAATCCGCGAA 59.372 41.667 8.23 0.00 35.31 4.70
5133 5621 2.285083 CAAAACTGGAACACTGTCCGA 58.715 47.619 0.00 0.00 40.96 4.55
5134 5622 2.014128 ACAAAACTGGAACACTGTCCG 58.986 47.619 0.00 0.00 40.96 4.79
5136 5624 5.945155 TGTTTACAAAACTGGAACACTGTC 58.055 37.500 4.35 0.00 0.00 3.51
5138 5626 7.032580 TCAATGTTTACAAAACTGGAACACTG 58.967 34.615 4.35 0.00 33.58 3.66
5142 5630 7.332182 TGGTTTCAATGTTTACAAAACTGGAAC 59.668 33.333 4.35 5.95 31.99 3.62
5143 5631 7.386851 TGGTTTCAATGTTTACAAAACTGGAA 58.613 30.769 4.35 3.19 31.99 3.53
5144 5632 6.936279 TGGTTTCAATGTTTACAAAACTGGA 58.064 32.000 4.35 0.00 31.99 3.86
5145 5633 7.602517 TTGGTTTCAATGTTTACAAAACTGG 57.397 32.000 4.35 0.00 31.99 4.00
5146 5634 9.540431 CTTTTGGTTTCAATGTTTACAAAACTG 57.460 29.630 4.35 0.00 34.08 3.16
5147 5635 8.726068 CCTTTTGGTTTCAATGTTTACAAAACT 58.274 29.630 4.35 0.00 34.08 2.66
5148 5636 8.888332 CCTTTTGGTTTCAATGTTTACAAAAC 57.112 30.769 0.00 0.00 34.08 2.43
5192 5680 1.619654 CAGTGTGGAGGCCAAAATCA 58.380 50.000 5.01 0.00 34.18 2.57
5253 5741 0.519077 GTCGAAAGGCCTGAGCAAAG 59.481 55.000 5.69 0.00 42.56 2.77
5254 5742 0.179032 TGTCGAAAGGCCTGAGCAAA 60.179 50.000 5.69 0.00 42.56 3.68
5258 5746 1.151668 CTTGTGTCGAAAGGCCTGAG 58.848 55.000 5.69 0.00 32.11 3.35
5290 5793 1.143183 GGCTATTTCTCGGGTCGCA 59.857 57.895 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.