Multiple sequence alignment - TraesCS1D01G362200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G362200 chr1D 100.000 2378 0 0 1 2378 444631811 444629434 0.000000e+00 4392.0
1 TraesCS1D01G362200 chr1D 86.056 1004 99 19 411 1387 444730597 444729608 0.000000e+00 1040.0
2 TraesCS1D01G362200 chr1D 86.056 1004 99 19 411 1387 444789804 444788815 0.000000e+00 1040.0
3 TraesCS1D01G362200 chr1D 96.338 628 19 3 1465 2090 444621330 444620705 0.000000e+00 1029.0
4 TraesCS1D01G362200 chr1D 91.994 712 51 5 1383 2090 444729574 444728865 0.000000e+00 994.0
5 TraesCS1D01G362200 chr1D 91.994 712 51 5 1383 2090 444788781 444788072 0.000000e+00 994.0
6 TraesCS1D01G362200 chr1D 80.517 1006 113 29 385 1363 444525037 444524088 0.000000e+00 695.0
7 TraesCS1D01G362200 chr1D 92.279 272 14 3 2106 2376 444620719 444620454 1.730000e-101 379.0
8 TraesCS1D01G362200 chr1D 95.187 187 9 0 1396 1582 444780723 444780537 1.790000e-76 296.0
9 TraesCS1D01G362200 chr1D 93.467 199 9 3 1393 1588 444524015 444523818 2.310000e-75 292.0
10 TraesCS1D01G362200 chr1D 86.550 171 18 4 2208 2376 362791460 362791627 1.450000e-42 183.0
11 TraesCS1D01G362200 chr1D 92.079 101 8 0 2106 2206 444728879 444728779 2.460000e-30 143.0
12 TraesCS1D01G362200 chr1D 92.079 101 8 0 2106 2206 444788086 444787986 2.460000e-30 143.0
13 TraesCS1D01G362200 chr1A 85.643 1003 89 20 489 1460 540125249 540124271 0.000000e+00 1003.0
14 TraesCS1D01G362200 chr1A 89.970 658 46 6 1443 2090 540124258 540123611 0.000000e+00 832.0
15 TraesCS1D01G362200 chr1A 81.742 356 42 13 456 799 540127457 540127113 2.330000e-70 276.0
16 TraesCS1D01G362200 chr1A 93.069 101 7 0 2106 2206 540123625 540123525 5.300000e-32 148.0
17 TraesCS1D01G362200 chr1A 97.222 36 1 0 494 529 540117044 540117009 7.100000e-06 62.1
18 TraesCS1D01G362200 chr1B 81.925 1018 112 36 377 1363 604660264 604659288 0.000000e+00 795.0
19 TraesCS1D01G362200 chr1B 84.097 742 64 25 411 1123 604678366 604677650 0.000000e+00 667.0
20 TraesCS1D01G362200 chr1B 90.816 490 41 2 880 1366 604701503 604701015 0.000000e+00 652.0
21 TraesCS1D01G362200 chr1B 82.933 750 68 32 411 1123 604740523 604739797 2.600000e-174 621.0
22 TraesCS1D01G362200 chr1B 80.192 626 95 13 766 1368 604705689 604705070 2.170000e-120 442.0
23 TraesCS1D01G362200 chr1B 92.460 252 18 1 1393 1644 604700949 604700699 2.250000e-95 359.0
24 TraesCS1D01G362200 chr1B 92.771 249 17 1 1396 1644 604739602 604739355 2.250000e-95 359.0
25 TraesCS1D01G362200 chr1B 81.735 438 56 17 411 836 604747196 604746771 6.290000e-91 344.0
26 TraesCS1D01G362200 chr1B 91.165 249 21 1 1396 1644 604677455 604677208 1.050000e-88 337.0
27 TraesCS1D01G362200 chr1B 91.200 250 15 2 484 728 604706026 604705779 1.360000e-87 333.0
28 TraesCS1D01G362200 chr1B 89.787 235 21 1 1135 1366 604746765 604746531 4.970000e-77 298.0
29 TraesCS1D01G362200 chr1B 91.500 200 17 0 1396 1595 604746462 604746263 2.330000e-70 276.0
30 TraesCS1D01G362200 chr1B 89.916 119 9 3 377 494 604707220 604707104 1.470000e-32 150.0
31 TraesCS1D01G362200 chr1B 85.821 134 19 0 1230 1363 604677655 604677522 2.460000e-30 143.0
32 TraesCS1D01G362200 chr1B 85.075 134 20 0 1230 1363 604739802 604739669 1.150000e-28 137.0
33 TraesCS1D01G362200 chr1B 98.182 55 1 0 2106 2160 604676813 604676759 1.950000e-16 97.1
34 TraesCS1D01G362200 chr1B 96.491 57 2 0 2106 2162 604738961 604738905 7.000000e-16 95.3
35 TraesCS1D01G362200 chr1B 89.091 55 5 1 1908 1962 6477954 6477901 1.530000e-07 67.6
36 TraesCS1D01G362200 chr3D 88.684 380 39 3 1 379 295155207 295154831 5.990000e-126 460.0
37 TraesCS1D01G362200 chr3D 88.315 368 39 3 12 378 480662089 480662453 2.810000e-119 438.0
38 TraesCS1D01G362200 chr5D 88.594 377 39 3 1 376 356351791 356352164 2.790000e-124 455.0
39 TraesCS1D01G362200 chr5D 87.268 377 44 3 1 376 57923716 57923343 6.070000e-116 427.0
40 TraesCS1D01G362200 chr2D 88.064 377 41 3 1 376 557631659 557632032 6.030000e-121 444.0
41 TraesCS1D01G362200 chr6D 87.696 382 40 6 1 380 399443573 399443949 2.810000e-119 438.0
42 TraesCS1D01G362200 chr6D 87.234 376 46 1 1 376 293522544 293522171 6.070000e-116 427.0
43 TraesCS1D01G362200 chr6D 87.574 169 20 1 2208 2376 383334860 383335027 6.710000e-46 195.0
44 TraesCS1D01G362200 chr6D 86.982 169 21 1 2208 2376 8557317 8557484 3.120000e-44 189.0
45 TraesCS1D01G362200 chr6D 95.918 49 2 0 1925 1973 358361332 358361380 1.960000e-11 80.5
46 TraesCS1D01G362200 chr7D 87.500 376 45 1 1 376 261075552 261075925 1.310000e-117 433.0
47 TraesCS1D01G362200 chr4D 87.599 379 39 6 1 376 96873771 96873398 1.310000e-117 433.0
48 TraesCS1D01G362200 chr4D 86.127 173 22 2 2204 2376 444258866 444259036 4.040000e-43 185.0
49 TraesCS1D01G362200 chr4A 87.574 169 20 1 2208 2376 567939208 567939375 6.710000e-46 195.0
50 TraesCS1D01G362200 chr4A 85.714 63 9 0 1908 1970 47157229 47157291 1.530000e-07 67.6
51 TraesCS1D01G362200 chr5A 87.059 170 21 1 2207 2376 443480257 443480425 8.680000e-45 191.0
52 TraesCS1D01G362200 chr6A 86.982 169 21 1 2208 2376 150247652 150247485 3.120000e-44 189.0
53 TraesCS1D01G362200 chr4B 86.471 170 22 1 2207 2376 167197825 167197657 4.040000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G362200 chr1D 444629434 444631811 2377 True 4392.000000 4392 100.00000 1 2378 1 chr1D.!!$R1 2377
1 TraesCS1D01G362200 chr1D 444728779 444730597 1818 True 725.666667 1040 90.04300 411 2206 3 chr1D.!!$R5 1795
2 TraesCS1D01G362200 chr1D 444787986 444789804 1818 True 725.666667 1040 90.04300 411 2206 3 chr1D.!!$R6 1795
3 TraesCS1D01G362200 chr1D 444620454 444621330 876 True 704.000000 1029 94.30850 1465 2376 2 chr1D.!!$R4 911
4 TraesCS1D01G362200 chr1D 444523818 444525037 1219 True 493.500000 695 86.99200 385 1588 2 chr1D.!!$R3 1203
5 TraesCS1D01G362200 chr1A 540123525 540127457 3932 True 564.750000 1003 87.60600 456 2206 4 chr1A.!!$R2 1750
6 TraesCS1D01G362200 chr1B 604659288 604660264 976 True 795.000000 795 81.92500 377 1363 1 chr1B.!!$R2 986
7 TraesCS1D01G362200 chr1B 604700699 604707220 6521 True 387.200000 652 88.91680 377 1644 5 chr1B.!!$R4 1267
8 TraesCS1D01G362200 chr1B 604676759 604678366 1607 True 311.025000 667 89.81625 411 2160 4 chr1B.!!$R3 1749
9 TraesCS1D01G362200 chr1B 604746263 604747196 933 True 306.000000 344 87.67400 411 1595 3 chr1B.!!$R6 1184
10 TraesCS1D01G362200 chr1B 604738905 604740523 1618 True 303.075000 621 89.31750 411 2162 4 chr1B.!!$R5 1751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
343 344 0.032416 TAGGGTGTCTAGGTCAGGCC 60.032 60.0 0.0 0.0 37.58 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 9074 0.811219 GCAGCAGCCATGATACACGA 60.811 55.0 0.0 0.0 33.58 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.479203 CCCAGCCAGCCCACGATA 61.479 66.667 0.00 0.00 0.00 2.92
29 30 2.203070 CCAGCCAGCCCACGATAC 60.203 66.667 0.00 0.00 0.00 2.24
30 31 2.584064 CAGCCAGCCCACGATACA 59.416 61.111 0.00 0.00 0.00 2.29
31 32 1.078497 CAGCCAGCCCACGATACAA 60.078 57.895 0.00 0.00 0.00 2.41
32 33 0.676466 CAGCCAGCCCACGATACAAA 60.676 55.000 0.00 0.00 0.00 2.83
33 34 0.255890 AGCCAGCCCACGATACAAAT 59.744 50.000 0.00 0.00 0.00 2.32
34 35 0.381801 GCCAGCCCACGATACAAATG 59.618 55.000 0.00 0.00 0.00 2.32
35 36 1.024271 CCAGCCCACGATACAAATGG 58.976 55.000 0.00 0.00 0.00 3.16
36 37 1.681780 CCAGCCCACGATACAAATGGT 60.682 52.381 0.00 0.00 0.00 3.55
37 38 2.091541 CAGCCCACGATACAAATGGTT 58.908 47.619 0.00 0.00 0.00 3.67
38 39 2.097466 CAGCCCACGATACAAATGGTTC 59.903 50.000 0.00 0.00 0.00 3.62
39 40 2.088423 GCCCACGATACAAATGGTTCA 58.912 47.619 0.00 0.00 0.00 3.18
40 41 2.490115 GCCCACGATACAAATGGTTCAA 59.510 45.455 0.00 0.00 0.00 2.69
41 42 3.130340 GCCCACGATACAAATGGTTCAAT 59.870 43.478 0.00 0.00 0.00 2.57
42 43 4.671377 CCCACGATACAAATGGTTCAATG 58.329 43.478 0.00 0.00 0.00 2.82
43 44 4.157656 CCCACGATACAAATGGTTCAATGT 59.842 41.667 0.00 0.00 0.00 2.71
44 45 5.355630 CCCACGATACAAATGGTTCAATGTA 59.644 40.000 0.00 0.00 33.24 2.29
45 46 6.255215 CCACGATACAAATGGTTCAATGTAC 58.745 40.000 0.00 0.00 31.65 2.90
46 47 6.128145 CCACGATACAAATGGTTCAATGTACA 60.128 38.462 0.00 0.00 31.65 2.90
47 48 7.415095 CCACGATACAAATGGTTCAATGTACAT 60.415 37.037 1.41 1.41 31.65 2.29
48 49 7.967854 CACGATACAAATGGTTCAATGTACATT 59.032 33.333 15.47 15.47 35.24 2.71
49 50 9.168451 ACGATACAAATGGTTCAATGTACATTA 57.832 29.630 20.39 5.64 33.54 1.90
50 51 9.995957 CGATACAAATGGTTCAATGTACATTAA 57.004 29.630 20.39 3.73 33.54 1.40
53 54 8.189119 ACAAATGGTTCAATGTACATTAAGGT 57.811 30.769 20.39 0.00 33.54 3.50
54 55 9.303116 ACAAATGGTTCAATGTACATTAAGGTA 57.697 29.630 20.39 8.33 33.54 3.08
55 56 9.787532 CAAATGGTTCAATGTACATTAAGGTAG 57.212 33.333 20.39 7.78 33.54 3.18
56 57 8.519799 AATGGTTCAATGTACATTAAGGTAGG 57.480 34.615 20.39 7.09 32.25 3.18
57 58 6.419791 TGGTTCAATGTACATTAAGGTAGGG 58.580 40.000 20.39 6.39 0.00 3.53
58 59 5.298527 GGTTCAATGTACATTAAGGTAGGGC 59.701 44.000 20.39 4.70 0.00 5.19
59 60 4.699637 TCAATGTACATTAAGGTAGGGCG 58.300 43.478 20.39 5.01 0.00 6.13
60 61 4.162698 TCAATGTACATTAAGGTAGGGCGT 59.837 41.667 20.39 0.00 0.00 5.68
61 62 4.765813 ATGTACATTAAGGTAGGGCGTT 57.234 40.909 1.41 0.00 0.00 4.84
62 63 5.874897 ATGTACATTAAGGTAGGGCGTTA 57.125 39.130 1.41 0.00 0.00 3.18
63 64 5.009854 TGTACATTAAGGTAGGGCGTTAC 57.990 43.478 0.00 0.00 0.00 2.50
64 65 4.711355 TGTACATTAAGGTAGGGCGTTACT 59.289 41.667 0.00 0.00 0.00 2.24
65 66 4.133013 ACATTAAGGTAGGGCGTTACTG 57.867 45.455 0.00 0.00 35.56 2.74
66 67 3.118519 ACATTAAGGTAGGGCGTTACTGG 60.119 47.826 0.00 0.00 34.50 4.00
67 68 2.236489 TAAGGTAGGGCGTTACTGGT 57.764 50.000 0.00 0.00 0.00 4.00
68 69 2.236489 AAGGTAGGGCGTTACTGGTA 57.764 50.000 0.00 0.00 0.00 3.25
69 70 2.236489 AGGTAGGGCGTTACTGGTAA 57.764 50.000 0.00 0.00 0.00 2.85
70 71 1.827344 AGGTAGGGCGTTACTGGTAAC 59.173 52.381 12.13 12.13 41.37 2.50
82 83 6.966435 GTTACTGGTAACGCCACTAATAAA 57.034 37.500 7.70 0.00 43.61 1.40
83 84 6.997222 GTTACTGGTAACGCCACTAATAAAG 58.003 40.000 7.70 0.00 43.61 1.85
84 85 5.410355 ACTGGTAACGCCACTAATAAAGA 57.590 39.130 0.00 0.00 43.61 2.52
85 86 5.797051 ACTGGTAACGCCACTAATAAAGAA 58.203 37.500 0.00 0.00 43.61 2.52
86 87 5.873164 ACTGGTAACGCCACTAATAAAGAAG 59.127 40.000 0.00 0.00 43.61 2.85
87 88 5.797051 TGGTAACGCCACTAATAAAGAAGT 58.203 37.500 0.00 0.00 43.61 3.01
88 89 6.934056 TGGTAACGCCACTAATAAAGAAGTA 58.066 36.000 0.00 0.00 43.61 2.24
89 90 7.558604 TGGTAACGCCACTAATAAAGAAGTAT 58.441 34.615 0.00 0.00 43.61 2.12
90 91 8.694540 TGGTAACGCCACTAATAAAGAAGTATA 58.305 33.333 0.00 0.00 43.61 1.47
91 92 9.533253 GGTAACGCCACTAATAAAGAAGTATAA 57.467 33.333 0.00 0.00 37.17 0.98
95 96 9.826574 ACGCCACTAATAAAGAAGTATAAATGA 57.173 29.630 0.00 0.00 0.00 2.57
118 119 9.814899 ATGATCTTTAAGACTACAGAGTGAATG 57.185 33.333 0.00 0.00 35.45 2.67
119 120 7.761704 TGATCTTTAAGACTACAGAGTGAATGC 59.238 37.037 0.00 0.00 35.45 3.56
120 121 6.398918 TCTTTAAGACTACAGAGTGAATGCC 58.601 40.000 0.00 0.00 35.45 4.40
121 122 3.618690 AAGACTACAGAGTGAATGCCC 57.381 47.619 0.00 0.00 35.45 5.36
122 123 1.478510 AGACTACAGAGTGAATGCCCG 59.521 52.381 0.00 0.00 35.45 6.13
123 124 1.476891 GACTACAGAGTGAATGCCCGA 59.523 52.381 0.00 0.00 35.45 5.14
124 125 1.204941 ACTACAGAGTGAATGCCCGAC 59.795 52.381 0.00 0.00 33.41 4.79
125 126 0.535335 TACAGAGTGAATGCCCGACC 59.465 55.000 0.00 0.00 0.00 4.79
126 127 1.811266 CAGAGTGAATGCCCGACCG 60.811 63.158 0.00 0.00 0.00 4.79
127 128 2.264794 GAGTGAATGCCCGACCGT 59.735 61.111 0.00 0.00 0.00 4.83
128 129 1.375523 GAGTGAATGCCCGACCGTT 60.376 57.895 0.00 0.00 0.00 4.44
129 130 1.635663 GAGTGAATGCCCGACCGTTG 61.636 60.000 0.00 0.00 0.00 4.10
130 131 3.053291 TGAATGCCCGACCGTTGC 61.053 61.111 0.00 0.00 0.00 4.17
131 132 3.810896 GAATGCCCGACCGTTGCC 61.811 66.667 0.00 0.00 0.00 4.52
132 133 4.652131 AATGCCCGACCGTTGCCA 62.652 61.111 0.00 0.00 0.00 4.92
133 134 3.936772 AATGCCCGACCGTTGCCAT 62.937 57.895 0.00 0.00 0.00 4.40
136 137 4.096003 CCCGACCGTTGCCATCCT 62.096 66.667 0.00 0.00 0.00 3.24
137 138 2.819595 CCGACCGTTGCCATCCTG 60.820 66.667 0.00 0.00 0.00 3.86
138 139 2.264480 CGACCGTTGCCATCCTGA 59.736 61.111 0.00 0.00 0.00 3.86
139 140 1.811266 CGACCGTTGCCATCCTGAG 60.811 63.158 0.00 0.00 0.00 3.35
140 141 1.296715 GACCGTTGCCATCCTGAGT 59.703 57.895 0.00 0.00 0.00 3.41
141 142 1.003355 ACCGTTGCCATCCTGAGTG 60.003 57.895 0.00 0.00 0.00 3.51
142 143 1.296392 CCGTTGCCATCCTGAGTGA 59.704 57.895 0.00 0.00 0.00 3.41
143 144 1.021390 CCGTTGCCATCCTGAGTGAC 61.021 60.000 0.00 0.00 0.00 3.67
144 145 1.354337 CGTTGCCATCCTGAGTGACG 61.354 60.000 0.00 0.00 0.00 4.35
145 146 0.320771 GTTGCCATCCTGAGTGACGT 60.321 55.000 0.00 0.00 0.00 4.34
146 147 0.396435 TTGCCATCCTGAGTGACGTT 59.604 50.000 0.00 0.00 0.00 3.99
147 148 1.262417 TGCCATCCTGAGTGACGTTA 58.738 50.000 0.00 0.00 0.00 3.18
148 149 1.204704 TGCCATCCTGAGTGACGTTAG 59.795 52.381 0.00 0.00 0.00 2.34
149 150 1.471676 GCCATCCTGAGTGACGTTAGG 60.472 57.143 0.00 0.00 0.00 2.69
150 151 1.825474 CCATCCTGAGTGACGTTAGGT 59.175 52.381 0.00 0.00 0.00 3.08
151 152 2.159226 CCATCCTGAGTGACGTTAGGTC 60.159 54.545 0.00 0.00 46.27 3.85
152 153 2.581216 TCCTGAGTGACGTTAGGTCT 57.419 50.000 6.61 0.00 46.24 3.85
153 154 2.872732 TCCTGAGTGACGTTAGGTCTT 58.127 47.619 6.61 0.00 46.24 3.01
154 155 2.818432 TCCTGAGTGACGTTAGGTCTTC 59.182 50.000 6.61 5.23 46.24 2.87
155 156 2.557056 CCTGAGTGACGTTAGGTCTTCA 59.443 50.000 6.61 8.94 46.24 3.02
156 157 3.005472 CCTGAGTGACGTTAGGTCTTCAA 59.995 47.826 6.61 0.00 46.24 2.69
157 158 3.973657 TGAGTGACGTTAGGTCTTCAAC 58.026 45.455 6.61 0.00 46.24 3.18
158 159 3.382227 TGAGTGACGTTAGGTCTTCAACA 59.618 43.478 6.61 3.03 46.24 3.33
159 160 3.714391 AGTGACGTTAGGTCTTCAACAC 58.286 45.455 6.61 0.00 46.24 3.32
160 161 3.383825 AGTGACGTTAGGTCTTCAACACT 59.616 43.478 6.61 0.00 46.24 3.55
161 162 3.734735 GTGACGTTAGGTCTTCAACACTC 59.265 47.826 6.61 0.00 46.24 3.51
162 163 3.243636 TGACGTTAGGTCTTCAACACTCC 60.244 47.826 6.61 0.00 46.24 3.85
163 164 2.288030 ACGTTAGGTCTTCAACACTCCG 60.288 50.000 0.00 0.00 0.00 4.63
164 165 2.030540 CGTTAGGTCTTCAACACTCCGA 60.031 50.000 0.00 0.00 0.00 4.55
165 166 3.576648 GTTAGGTCTTCAACACTCCGAG 58.423 50.000 0.00 0.00 0.00 4.63
166 167 1.705873 AGGTCTTCAACACTCCGAGT 58.294 50.000 0.00 0.00 0.00 4.18
170 171 1.760613 TCTTCAACACTCCGAGTGGTT 59.239 47.619 28.08 18.00 45.36 3.67
171 172 2.169769 TCTTCAACACTCCGAGTGGTTT 59.830 45.455 28.08 14.38 45.36 3.27
172 173 2.234300 TCAACACTCCGAGTGGTTTC 57.766 50.000 28.08 0.00 45.36 2.78
173 174 1.760613 TCAACACTCCGAGTGGTTTCT 59.239 47.619 28.08 7.97 45.36 2.52
174 175 2.169769 TCAACACTCCGAGTGGTTTCTT 59.830 45.455 28.08 13.09 45.36 2.52
175 176 2.287915 CAACACTCCGAGTGGTTTCTTG 59.712 50.000 28.08 19.50 45.36 3.02
176 177 0.868406 CACTCCGAGTGGTTTCTTGC 59.132 55.000 19.29 0.00 42.35 4.01
177 178 0.468226 ACTCCGAGTGGTTTCTTGCA 59.532 50.000 0.00 0.00 36.30 4.08
178 179 1.072331 ACTCCGAGTGGTTTCTTGCAT 59.928 47.619 0.00 0.00 36.30 3.96
179 180 1.734465 CTCCGAGTGGTTTCTTGCATC 59.266 52.381 0.00 0.00 36.30 3.91
180 181 1.071542 TCCGAGTGGTTTCTTGCATCA 59.928 47.619 0.00 0.00 36.30 3.07
181 182 2.086869 CCGAGTGGTTTCTTGCATCAT 58.913 47.619 0.00 0.00 0.00 2.45
182 183 2.096496 CCGAGTGGTTTCTTGCATCATC 59.904 50.000 0.00 0.00 0.00 2.92
183 184 2.222886 CGAGTGGTTTCTTGCATCATCG 60.223 50.000 0.00 0.00 0.00 3.84
184 185 3.002791 GAGTGGTTTCTTGCATCATCGA 58.997 45.455 0.00 0.00 0.00 3.59
185 186 3.005554 AGTGGTTTCTTGCATCATCGAG 58.994 45.455 0.00 0.00 0.00 4.04
186 187 2.744202 GTGGTTTCTTGCATCATCGAGT 59.256 45.455 0.00 0.00 0.00 4.18
187 188 2.743664 TGGTTTCTTGCATCATCGAGTG 59.256 45.455 0.00 0.00 0.00 3.51
188 189 3.002791 GGTTTCTTGCATCATCGAGTGA 58.997 45.455 0.00 0.00 42.06 3.41
189 190 3.181516 GGTTTCTTGCATCATCGAGTGAC 60.182 47.826 0.00 0.00 40.28 3.67
190 191 3.599730 TTCTTGCATCATCGAGTGACT 57.400 42.857 0.00 0.00 40.28 3.41
191 192 3.599730 TCTTGCATCATCGAGTGACTT 57.400 42.857 0.00 0.00 40.28 3.01
192 193 3.515630 TCTTGCATCATCGAGTGACTTC 58.484 45.455 0.00 0.00 40.28 3.01
193 194 3.056607 TCTTGCATCATCGAGTGACTTCA 60.057 43.478 0.00 0.00 40.28 3.02
194 195 3.531934 TGCATCATCGAGTGACTTCAT 57.468 42.857 0.00 0.00 40.28 2.57
195 196 3.451526 TGCATCATCGAGTGACTTCATC 58.548 45.455 0.00 0.00 40.28 2.92
196 197 3.131755 TGCATCATCGAGTGACTTCATCT 59.868 43.478 0.00 0.00 40.28 2.90
197 198 4.118410 GCATCATCGAGTGACTTCATCTT 58.882 43.478 0.00 0.00 40.28 2.40
198 199 4.025896 GCATCATCGAGTGACTTCATCTTG 60.026 45.833 0.00 0.00 40.28 3.02
199 200 4.115401 TCATCGAGTGACTTCATCTTGG 57.885 45.455 0.00 0.00 0.00 3.61
200 201 3.511540 TCATCGAGTGACTTCATCTTGGT 59.488 43.478 0.00 0.00 0.00 3.67
201 202 3.577649 TCGAGTGACTTCATCTTGGTC 57.422 47.619 0.00 0.00 0.00 4.02
202 203 2.095212 TCGAGTGACTTCATCTTGGTCG 60.095 50.000 0.00 0.00 33.21 4.79
203 204 2.095212 CGAGTGACTTCATCTTGGTCGA 60.095 50.000 0.00 0.00 33.21 4.20
204 205 3.611766 CGAGTGACTTCATCTTGGTCGAA 60.612 47.826 0.00 0.00 33.21 3.71
205 206 4.499183 GAGTGACTTCATCTTGGTCGAAT 58.501 43.478 0.00 0.00 33.21 3.34
206 207 4.248859 AGTGACTTCATCTTGGTCGAATG 58.751 43.478 0.00 0.00 33.21 2.67
207 208 3.372206 GTGACTTCATCTTGGTCGAATGG 59.628 47.826 0.00 0.00 33.21 3.16
208 209 3.260632 TGACTTCATCTTGGTCGAATGGA 59.739 43.478 0.00 0.00 33.21 3.41
209 210 4.253685 GACTTCATCTTGGTCGAATGGAA 58.746 43.478 0.00 0.00 0.00 3.53
210 211 4.848357 ACTTCATCTTGGTCGAATGGAAT 58.152 39.130 0.00 0.00 0.00 3.01
211 212 5.256474 ACTTCATCTTGGTCGAATGGAATT 58.744 37.500 0.00 0.00 40.93 2.17
212 213 5.124457 ACTTCATCTTGGTCGAATGGAATTG 59.876 40.000 0.00 0.00 36.07 2.32
213 214 3.947196 TCATCTTGGTCGAATGGAATTGG 59.053 43.478 0.00 0.00 36.07 3.16
214 215 2.722094 TCTTGGTCGAATGGAATTGGG 58.278 47.619 0.00 0.00 36.07 4.12
215 216 1.750778 CTTGGTCGAATGGAATTGGGG 59.249 52.381 0.00 0.00 36.07 4.96
216 217 0.701731 TGGTCGAATGGAATTGGGGT 59.298 50.000 0.00 0.00 36.07 4.95
217 218 1.916874 TGGTCGAATGGAATTGGGGTA 59.083 47.619 0.00 0.00 36.07 3.69
218 219 2.512056 TGGTCGAATGGAATTGGGGTAT 59.488 45.455 0.00 0.00 36.07 2.73
219 220 3.146847 GGTCGAATGGAATTGGGGTATC 58.853 50.000 0.00 0.00 36.07 2.24
220 221 3.146847 GTCGAATGGAATTGGGGTATCC 58.853 50.000 0.00 0.00 36.07 2.59
221 222 2.151202 CGAATGGAATTGGGGTATCCG 58.849 52.381 0.00 0.00 36.07 4.18
222 223 2.224426 CGAATGGAATTGGGGTATCCGA 60.224 50.000 0.00 0.00 36.07 4.55
223 224 3.559171 CGAATGGAATTGGGGTATCCGAT 60.559 47.826 0.00 0.00 41.44 4.18
225 226 3.222173 TGGAATTGGGGTATCCGATTG 57.778 47.619 2.50 0.00 46.96 2.67
226 227 2.780592 TGGAATTGGGGTATCCGATTGA 59.219 45.455 2.50 0.00 46.96 2.57
227 228 3.181445 TGGAATTGGGGTATCCGATTGAG 60.181 47.826 2.50 0.00 46.96 3.02
228 229 3.072476 GGAATTGGGGTATCCGATTGAGA 59.928 47.826 2.50 0.00 46.96 3.27
229 230 4.263506 GGAATTGGGGTATCCGATTGAGAT 60.264 45.833 2.50 0.00 46.96 2.75
230 231 5.045869 GGAATTGGGGTATCCGATTGAGATA 60.046 44.000 2.50 0.00 46.96 1.98
231 232 6.448369 AATTGGGGTATCCGATTGAGATAA 57.552 37.500 0.00 0.00 45.63 1.75
232 233 6.642733 ATTGGGGTATCCGATTGAGATAAT 57.357 37.500 0.00 0.00 36.17 1.28
233 234 7.749377 ATTGGGGTATCCGATTGAGATAATA 57.251 36.000 0.00 0.00 36.17 0.98
234 235 6.791867 TGGGGTATCCGATTGAGATAATAG 57.208 41.667 0.00 0.00 38.76 1.73
235 236 5.661312 TGGGGTATCCGATTGAGATAATAGG 59.339 44.000 0.00 0.00 38.76 2.57
236 237 5.661759 GGGGTATCCGATTGAGATAATAGGT 59.338 44.000 0.00 0.00 0.00 3.08
237 238 6.183360 GGGGTATCCGATTGAGATAATAGGTC 60.183 46.154 0.00 0.00 0.00 3.85
238 239 6.459848 GGGTATCCGATTGAGATAATAGGTCG 60.460 46.154 0.00 0.00 0.00 4.79
239 240 6.318144 GGTATCCGATTGAGATAATAGGTCGA 59.682 42.308 0.00 0.00 0.00 4.20
240 241 5.881777 TCCGATTGAGATAATAGGTCGAG 57.118 43.478 0.00 0.00 0.00 4.04
241 242 5.314529 TCCGATTGAGATAATAGGTCGAGT 58.685 41.667 0.00 0.00 0.00 4.18
242 243 5.181433 TCCGATTGAGATAATAGGTCGAGTG 59.819 44.000 0.00 0.00 0.00 3.51
243 244 5.394802 CGATTGAGATAATAGGTCGAGTGG 58.605 45.833 0.00 0.00 0.00 4.00
244 245 5.181433 CGATTGAGATAATAGGTCGAGTGGA 59.819 44.000 0.00 0.00 0.00 4.02
245 246 6.127869 CGATTGAGATAATAGGTCGAGTGGAT 60.128 42.308 0.00 0.00 0.00 3.41
246 247 6.978674 TTGAGATAATAGGTCGAGTGGATT 57.021 37.500 0.00 0.00 0.00 3.01
247 248 6.332735 TGAGATAATAGGTCGAGTGGATTG 57.667 41.667 0.00 0.00 0.00 2.67
248 249 5.140747 AGATAATAGGTCGAGTGGATTGC 57.859 43.478 0.00 0.00 0.00 3.56
249 250 4.588951 AGATAATAGGTCGAGTGGATTGCA 59.411 41.667 0.00 0.00 0.00 4.08
250 251 2.604046 ATAGGTCGAGTGGATTGCAC 57.396 50.000 0.00 0.00 0.00 4.57
251 252 1.557099 TAGGTCGAGTGGATTGCACT 58.443 50.000 10.90 10.90 35.30 4.40
252 253 0.247736 AGGTCGAGTGGATTGCACTC 59.752 55.000 23.89 23.89 43.98 3.51
253 254 0.741221 GGTCGAGTGGATTGCACTCC 60.741 60.000 26.48 15.93 44.43 3.85
254 255 0.037326 GTCGAGTGGATTGCACTCCA 60.037 55.000 26.48 21.03 44.43 3.86
255 256 0.684535 TCGAGTGGATTGCACTCCAA 59.315 50.000 25.77 15.60 46.66 3.53
256 257 1.081892 CGAGTGGATTGCACTCCAAG 58.918 55.000 25.77 16.39 46.66 3.61
257 258 1.457346 GAGTGGATTGCACTCCAAGG 58.543 55.000 25.77 0.00 46.66 3.61
258 259 0.773644 AGTGGATTGCACTCCAAGGT 59.226 50.000 25.77 11.90 46.66 3.50
259 260 1.168714 GTGGATTGCACTCCAAGGTC 58.831 55.000 25.77 11.03 46.66 3.85
260 261 0.770499 TGGATTGCACTCCAAGGTCA 59.230 50.000 22.45 0.00 42.36 4.02
261 262 1.355381 TGGATTGCACTCCAAGGTCAT 59.645 47.619 22.45 0.00 42.36 3.06
262 263 2.225091 TGGATTGCACTCCAAGGTCATT 60.225 45.455 22.45 0.00 42.36 2.57
263 264 2.827921 GGATTGCACTCCAAGGTCATTT 59.172 45.455 17.71 0.00 36.76 2.32
264 265 3.119352 GGATTGCACTCCAAGGTCATTTC 60.119 47.826 17.71 0.00 36.76 2.17
265 266 2.655090 TGCACTCCAAGGTCATTTCA 57.345 45.000 0.00 0.00 0.00 2.69
266 267 2.507484 TGCACTCCAAGGTCATTTCAG 58.493 47.619 0.00 0.00 0.00 3.02
267 268 2.158623 TGCACTCCAAGGTCATTTCAGT 60.159 45.455 0.00 0.00 0.00 3.41
268 269 2.485814 GCACTCCAAGGTCATTTCAGTC 59.514 50.000 0.00 0.00 0.00 3.51
269 270 3.077359 CACTCCAAGGTCATTTCAGTCC 58.923 50.000 0.00 0.00 0.00 3.85
270 271 2.289694 ACTCCAAGGTCATTTCAGTCCG 60.290 50.000 0.00 0.00 0.00 4.79
271 272 1.697432 TCCAAGGTCATTTCAGTCCGT 59.303 47.619 0.00 0.00 0.00 4.69
272 273 2.901192 TCCAAGGTCATTTCAGTCCGTA 59.099 45.455 0.00 0.00 0.00 4.02
273 274 3.517901 TCCAAGGTCATTTCAGTCCGTAT 59.482 43.478 0.00 0.00 0.00 3.06
274 275 3.871594 CCAAGGTCATTTCAGTCCGTATC 59.128 47.826 0.00 0.00 0.00 2.24
275 276 3.821421 AGGTCATTTCAGTCCGTATCC 57.179 47.619 0.00 0.00 0.00 2.59
276 277 3.375699 AGGTCATTTCAGTCCGTATCCT 58.624 45.455 0.00 0.00 0.00 3.24
277 278 3.775316 AGGTCATTTCAGTCCGTATCCTT 59.225 43.478 0.00 0.00 0.00 3.36
278 279 4.225267 AGGTCATTTCAGTCCGTATCCTTT 59.775 41.667 0.00 0.00 0.00 3.11
279 280 4.332819 GGTCATTTCAGTCCGTATCCTTTG 59.667 45.833 0.00 0.00 0.00 2.77
280 281 4.935808 GTCATTTCAGTCCGTATCCTTTGT 59.064 41.667 0.00 0.00 0.00 2.83
281 282 5.411669 GTCATTTCAGTCCGTATCCTTTGTT 59.588 40.000 0.00 0.00 0.00 2.83
282 283 6.592607 GTCATTTCAGTCCGTATCCTTTGTTA 59.407 38.462 0.00 0.00 0.00 2.41
283 284 7.280205 GTCATTTCAGTCCGTATCCTTTGTTAT 59.720 37.037 0.00 0.00 0.00 1.89
284 285 8.479689 TCATTTCAGTCCGTATCCTTTGTTATA 58.520 33.333 0.00 0.00 0.00 0.98
285 286 9.273016 CATTTCAGTCCGTATCCTTTGTTATAT 57.727 33.333 0.00 0.00 0.00 0.86
287 288 9.754382 TTTCAGTCCGTATCCTTTGTTATATAC 57.246 33.333 0.00 0.00 0.00 1.47
288 289 8.701908 TCAGTCCGTATCCTTTGTTATATACT 57.298 34.615 0.00 0.00 0.00 2.12
289 290 9.139734 TCAGTCCGTATCCTTTGTTATATACTT 57.860 33.333 0.00 0.00 0.00 2.24
290 291 9.760077 CAGTCCGTATCCTTTGTTATATACTTT 57.240 33.333 0.00 0.00 0.00 2.66
291 292 9.760077 AGTCCGTATCCTTTGTTATATACTTTG 57.240 33.333 0.00 0.00 0.00 2.77
292 293 9.754382 GTCCGTATCCTTTGTTATATACTTTGA 57.246 33.333 0.00 0.00 0.00 2.69
299 300 9.905713 TCCTTTGTTATATACTTTGAATGCTCT 57.094 29.630 0.00 0.00 0.00 4.09
304 305 9.890629 TGTTATATACTTTGAATGCTCTTGACT 57.109 29.630 0.00 0.00 0.00 3.41
309 310 6.566197 ACTTTGAATGCTCTTGACTTTAGG 57.434 37.500 0.00 0.00 0.00 2.69
310 311 6.299141 ACTTTGAATGCTCTTGACTTTAGGA 58.701 36.000 0.00 0.00 0.00 2.94
311 312 6.944862 ACTTTGAATGCTCTTGACTTTAGGAT 59.055 34.615 0.00 0.00 0.00 3.24
312 313 8.103305 ACTTTGAATGCTCTTGACTTTAGGATA 58.897 33.333 0.00 0.00 0.00 2.59
313 314 8.498054 TTTGAATGCTCTTGACTTTAGGATAG 57.502 34.615 0.00 0.00 0.00 2.08
314 315 7.187824 TGAATGCTCTTGACTTTAGGATAGT 57.812 36.000 0.00 0.00 0.00 2.12
315 316 7.044181 TGAATGCTCTTGACTTTAGGATAGTG 58.956 38.462 0.00 0.00 0.00 2.74
316 317 6.798427 ATGCTCTTGACTTTAGGATAGTGA 57.202 37.500 0.00 0.00 0.00 3.41
317 318 5.967088 TGCTCTTGACTTTAGGATAGTGAC 58.033 41.667 0.00 0.00 0.00 3.67
318 319 5.105310 TGCTCTTGACTTTAGGATAGTGACC 60.105 44.000 0.00 0.00 0.00 4.02
319 320 5.128008 GCTCTTGACTTTAGGATAGTGACCT 59.872 44.000 0.00 0.00 41.05 3.85
320 321 6.351456 GCTCTTGACTTTAGGATAGTGACCTT 60.351 42.308 0.00 0.00 38.76 3.50
321 322 6.936279 TCTTGACTTTAGGATAGTGACCTTG 58.064 40.000 0.00 0.00 38.76 3.61
322 323 5.677319 TGACTTTAGGATAGTGACCTTGG 57.323 43.478 0.00 0.00 38.76 3.61
323 324 4.469945 TGACTTTAGGATAGTGACCTTGGG 59.530 45.833 0.00 0.00 38.76 4.12
324 325 4.436079 ACTTTAGGATAGTGACCTTGGGT 58.564 43.478 0.00 0.00 39.44 4.51
325 326 5.596763 ACTTTAGGATAGTGACCTTGGGTA 58.403 41.667 0.00 0.00 35.25 3.69
326 327 5.661759 ACTTTAGGATAGTGACCTTGGGTAG 59.338 44.000 0.00 0.00 35.25 3.18
336 337 1.497161 CCTTGGGTAGGGTGTCTAGG 58.503 60.000 0.00 0.00 40.67 3.02
337 338 1.273666 CCTTGGGTAGGGTGTCTAGGT 60.274 57.143 0.00 0.00 40.67 3.08
338 339 2.108970 CTTGGGTAGGGTGTCTAGGTC 58.891 57.143 0.00 0.00 0.00 3.85
339 340 1.086565 TGGGTAGGGTGTCTAGGTCA 58.913 55.000 0.00 0.00 0.00 4.02
340 341 1.006758 TGGGTAGGGTGTCTAGGTCAG 59.993 57.143 0.00 0.00 0.00 3.51
341 342 1.688627 GGGTAGGGTGTCTAGGTCAGG 60.689 61.905 0.00 0.00 0.00 3.86
342 343 1.112950 GTAGGGTGTCTAGGTCAGGC 58.887 60.000 0.00 0.00 0.00 4.85
343 344 0.032416 TAGGGTGTCTAGGTCAGGCC 60.032 60.000 0.00 0.00 37.58 5.19
356 357 1.903183 GTCAGGCCTATGACCCTATCC 59.097 57.143 3.98 0.00 43.12 2.59
357 358 1.795786 TCAGGCCTATGACCCTATCCT 59.204 52.381 3.98 0.00 0.00 3.24
358 359 3.001086 TCAGGCCTATGACCCTATCCTA 58.999 50.000 3.98 0.00 0.00 2.94
359 360 3.011821 TCAGGCCTATGACCCTATCCTAG 59.988 52.174 3.98 0.00 0.00 3.02
360 361 3.011821 CAGGCCTATGACCCTATCCTAGA 59.988 52.174 3.98 0.00 29.34 2.43
361 362 3.867863 AGGCCTATGACCCTATCCTAGAT 59.132 47.826 1.29 0.00 29.34 1.98
362 363 4.078863 AGGCCTATGACCCTATCCTAGATC 60.079 50.000 1.29 0.00 29.34 2.75
363 364 4.078863 GGCCTATGACCCTATCCTAGATCT 60.079 50.000 0.00 0.00 29.34 2.75
364 365 5.134679 GGCCTATGACCCTATCCTAGATCTA 59.865 48.000 1.69 1.69 29.34 1.98
365 366 6.183361 GGCCTATGACCCTATCCTAGATCTAT 60.183 46.154 2.11 0.00 29.34 1.98
366 367 6.719370 GCCTATGACCCTATCCTAGATCTATG 59.281 46.154 2.11 0.30 29.34 2.23
367 368 7.237982 CCTATGACCCTATCCTAGATCTATGG 58.762 46.154 2.11 7.32 29.34 2.74
368 369 4.873010 TGACCCTATCCTAGATCTATGGC 58.127 47.826 2.11 0.00 0.00 4.40
369 370 4.294970 TGACCCTATCCTAGATCTATGGCA 59.705 45.833 2.11 0.00 0.00 4.92
370 371 5.043055 TGACCCTATCCTAGATCTATGGCAT 60.043 44.000 4.88 4.88 0.00 4.40
371 372 5.859429 ACCCTATCCTAGATCTATGGCATT 58.141 41.667 4.78 0.00 0.00 3.56
372 373 5.664908 ACCCTATCCTAGATCTATGGCATTG 59.335 44.000 4.78 3.38 0.00 2.82
373 374 5.664908 CCCTATCCTAGATCTATGGCATTGT 59.335 44.000 4.78 0.00 0.00 2.71
374 375 6.183360 CCCTATCCTAGATCTATGGCATTGTC 60.183 46.154 4.78 4.50 0.00 3.18
375 376 6.382282 CCTATCCTAGATCTATGGCATTGTCA 59.618 42.308 4.78 0.00 0.00 3.58
395 396 3.128375 CACTGCGGCCCAAGTTTT 58.872 55.556 0.00 0.00 0.00 2.43
433 434 9.821662 GTGTAACATATGTGAAACTAAAGGAAC 57.178 33.333 9.63 0.00 34.86 3.62
444 445 3.805207 ACTAAAGGAACCATCGTATGCC 58.195 45.455 0.00 0.00 0.00 4.40
449 450 1.873591 GGAACCATCGTATGCCATGTC 59.126 52.381 0.00 0.00 0.00 3.06
452 453 0.950555 CCATCGTATGCCATGTCCCG 60.951 60.000 0.00 0.00 0.00 5.14
453 454 0.249868 CATCGTATGCCATGTCCCGT 60.250 55.000 0.00 0.00 0.00 5.28
454 455 1.000394 CATCGTATGCCATGTCCCGTA 60.000 52.381 0.00 0.00 0.00 4.02
641 1758 2.031683 AGTGTCTCCGCAAAAGAAAACG 59.968 45.455 0.00 0.00 0.00 3.60
710 1827 2.351418 TCTACGCATGTACTTGCATTGC 59.649 45.455 27.33 0.46 42.91 3.56
798 4196 8.664211 AAGACCTTAAGAAATTTAGATAGCGG 57.336 34.615 3.36 0.00 0.00 5.52
878 4289 2.159366 CGTGAGCACTAATCGTCTCCTT 60.159 50.000 0.00 0.00 0.00 3.36
882 4294 5.517054 GTGAGCACTAATCGTCTCCTTAAAG 59.483 44.000 0.00 0.00 0.00 1.85
895 4309 4.821805 TCTCCTTAAAGCAACTTCTTGTGG 59.178 41.667 0.00 0.00 0.00 4.17
904 4318 4.080863 AGCAACTTCTTGTGGGTCCTATAG 60.081 45.833 0.00 0.00 0.00 1.31
908 4322 7.635089 GCAACTTCTTGTGGGTCCTATAGATTA 60.635 40.741 0.00 0.00 0.00 1.75
964 8441 1.808945 CCAACTCATCCACTCAAGCAC 59.191 52.381 0.00 0.00 0.00 4.40
981 8458 1.945387 CACCATCTGCGACAATAGCT 58.055 50.000 0.00 0.00 35.28 3.32
996 8473 0.974010 TAGCTACCACCAACCCGGAG 60.974 60.000 0.73 0.00 38.63 4.63
1260 8756 2.594962 CGCCGACTGTTTGAGCGTT 61.595 57.895 0.00 0.00 41.78 4.84
1288 8784 0.677288 CCGGGCATATCTCCGTGTTA 59.323 55.000 11.06 0.00 44.32 2.41
1301 8797 0.162933 CGTGTTAGCGCAAACATCGT 59.837 50.000 11.47 0.00 41.18 3.73
1370 8866 1.772182 GACCTCGCTTGTATCATCGG 58.228 55.000 0.00 0.00 0.00 4.18
1500 9074 3.056250 CCTAGCTTATCCATCGATGCACT 60.056 47.826 20.25 11.49 0.00 4.40
1532 9113 2.125512 GCTGCTACTGGTGGTCGG 60.126 66.667 0.00 0.00 0.00 4.79
1586 9167 1.971167 TGATGTGTTCGCTTGCCCC 60.971 57.895 0.00 0.00 0.00 5.80
1613 9194 8.102676 TCTCTTTGGTCTGATCATGTTTTATGA 58.897 33.333 0.00 0.00 0.00 2.15
1618 9199 9.695526 TTGGTCTGATCATGTTTTATGAAAAAG 57.304 29.630 0.00 0.00 35.29 2.27
1659 9240 4.207019 CACAAGTTGATTCGGCAAACTTTC 59.793 41.667 10.54 0.00 0.00 2.62
1689 9270 2.166829 ACACAGTTTGCCAAGTGTCAA 58.833 42.857 7.99 0.00 43.59 3.18
1834 9416 1.781555 CGAGTTGTTGCCTAGCACG 59.218 57.895 0.00 0.00 38.71 5.34
1865 9448 4.092771 TGCAAGAGATGTCGTAGTGTAC 57.907 45.455 0.00 0.00 0.00 2.90
2090 9678 3.307059 GCCCAACACTCACACTCTAGATT 60.307 47.826 0.00 0.00 0.00 2.40
2091 9679 4.804261 GCCCAACACTCACACTCTAGATTT 60.804 45.833 0.00 0.00 0.00 2.17
2092 9680 5.308825 CCCAACACTCACACTCTAGATTTT 58.691 41.667 0.00 0.00 0.00 1.82
2093 9681 5.765182 CCCAACACTCACACTCTAGATTTTT 59.235 40.000 0.00 0.00 0.00 1.94
2206 9794 4.038162 GGTCGCACATAGAGGTCTTATTCT 59.962 45.833 0.00 0.00 0.00 2.40
2211 9799 7.284716 TCGCACATAGAGGTCTTATTCTTAAGA 59.715 37.037 0.00 0.00 41.18 2.10
2231 9819 9.754382 CTTAAGAATGACAATTTTATCCATGGG 57.246 33.333 13.02 0.00 0.00 4.00
2232 9820 7.738437 AAGAATGACAATTTTATCCATGGGT 57.262 32.000 13.02 7.52 0.00 4.51
2233 9821 8.837099 AAGAATGACAATTTTATCCATGGGTA 57.163 30.769 13.02 6.17 0.00 3.69
2234 9822 8.237811 AGAATGACAATTTTATCCATGGGTAC 57.762 34.615 13.02 0.00 0.00 3.34
2235 9823 7.838696 AGAATGACAATTTTATCCATGGGTACA 59.161 33.333 13.02 0.00 0.00 2.90
2240 9828 6.831868 ACAATTTTATCCATGGGTACAGGTAC 59.168 38.462 13.02 0.93 35.40 3.34
2251 9839 0.183492 TACAGGTACCCGCGGATACT 59.817 55.000 28.39 16.57 0.00 2.12
2265 9853 3.521947 GGATACTGTATCCGTATGGGC 57.478 52.381 26.32 6.01 44.75 5.36
2269 9857 1.338107 CTGTATCCGTATGGGCAGGA 58.662 55.000 0.00 0.00 38.56 3.86
2294 9882 2.425312 TGGCACAATTTTATACCTGCGG 59.575 45.455 0.00 0.00 31.92 5.69
2299 9887 6.294508 GGCACAATTTTATACCTGCGGATAAT 60.295 38.462 0.00 0.00 0.00 1.28
2314 9902 4.355549 CGGATAATACCCCATACCCTACA 58.644 47.826 0.00 0.00 0.00 2.74
2370 9958 7.827729 GTCTTTTACCCATGGATATACCCATAC 59.172 40.741 15.22 0.00 44.69 2.39
2376 9964 4.344102 CCATGGATATACCCATACCCTACG 59.656 50.000 5.56 0.00 44.69 3.51
2377 9965 3.368248 TGGATATACCCATACCCTACGC 58.632 50.000 0.00 0.00 38.00 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.479203 TATCGTGGGCTGGCTGGG 61.479 66.667 0.00 0.00 0.00 4.45
12 13 2.203070 GTATCGTGGGCTGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
13 14 0.676466 TTTGTATCGTGGGCTGGCTG 60.676 55.000 0.00 0.00 0.00 4.85
14 15 0.255890 ATTTGTATCGTGGGCTGGCT 59.744 50.000 0.00 0.00 0.00 4.75
15 16 0.381801 CATTTGTATCGTGGGCTGGC 59.618 55.000 0.00 0.00 0.00 4.85
16 17 1.024271 CCATTTGTATCGTGGGCTGG 58.976 55.000 0.00 0.00 0.00 4.85
17 18 1.750193 ACCATTTGTATCGTGGGCTG 58.250 50.000 0.00 0.00 37.33 4.85
18 19 2.290641 TGAACCATTTGTATCGTGGGCT 60.291 45.455 0.00 0.00 37.33 5.19
19 20 2.088423 TGAACCATTTGTATCGTGGGC 58.912 47.619 0.00 0.00 37.33 5.36
20 21 4.157656 ACATTGAACCATTTGTATCGTGGG 59.842 41.667 0.00 0.00 37.33 4.61
21 22 5.309323 ACATTGAACCATTTGTATCGTGG 57.691 39.130 0.00 0.00 38.96 4.94
22 23 6.836953 TGTACATTGAACCATTTGTATCGTG 58.163 36.000 0.00 0.00 0.00 4.35
23 24 7.624360 ATGTACATTGAACCATTTGTATCGT 57.376 32.000 1.41 0.00 0.00 3.73
24 25 9.995957 TTAATGTACATTGAACCATTTGTATCG 57.004 29.630 27.62 0.00 32.50 2.92
27 28 9.303116 ACCTTAATGTACATTGAACCATTTGTA 57.697 29.630 27.62 3.52 32.50 2.41
28 29 8.189119 ACCTTAATGTACATTGAACCATTTGT 57.811 30.769 27.62 10.73 32.50 2.83
29 30 9.787532 CTACCTTAATGTACATTGAACCATTTG 57.212 33.333 27.62 8.53 32.50 2.32
30 31 8.966868 CCTACCTTAATGTACATTGAACCATTT 58.033 33.333 27.62 4.71 32.50 2.32
31 32 7.559897 CCCTACCTTAATGTACATTGAACCATT 59.440 37.037 27.62 5.42 32.50 3.16
32 33 7.060421 CCCTACCTTAATGTACATTGAACCAT 58.940 38.462 27.62 12.48 32.50 3.55
33 34 6.419791 CCCTACCTTAATGTACATTGAACCA 58.580 40.000 27.62 7.56 32.50 3.67
34 35 5.298527 GCCCTACCTTAATGTACATTGAACC 59.701 44.000 27.62 5.86 32.50 3.62
35 36 5.007332 CGCCCTACCTTAATGTACATTGAAC 59.993 44.000 27.62 8.39 32.50 3.18
36 37 5.120399 CGCCCTACCTTAATGTACATTGAA 58.880 41.667 27.62 16.94 32.50 2.69
37 38 4.162698 ACGCCCTACCTTAATGTACATTGA 59.837 41.667 27.62 19.92 32.50 2.57
38 39 4.448210 ACGCCCTACCTTAATGTACATTG 58.552 43.478 27.62 15.39 32.50 2.82
39 40 4.765813 ACGCCCTACCTTAATGTACATT 57.234 40.909 23.80 23.80 34.93 2.71
40 41 4.765813 AACGCCCTACCTTAATGTACAT 57.234 40.909 1.41 1.41 0.00 2.29
41 42 4.711355 AGTAACGCCCTACCTTAATGTACA 59.289 41.667 0.00 0.00 0.00 2.90
42 43 5.045872 CAGTAACGCCCTACCTTAATGTAC 58.954 45.833 0.00 0.00 0.00 2.90
43 44 4.099881 CCAGTAACGCCCTACCTTAATGTA 59.900 45.833 0.00 0.00 0.00 2.29
44 45 3.118519 CCAGTAACGCCCTACCTTAATGT 60.119 47.826 0.00 0.00 0.00 2.71
45 46 3.118519 ACCAGTAACGCCCTACCTTAATG 60.119 47.826 0.00 0.00 0.00 1.90
46 47 3.109928 ACCAGTAACGCCCTACCTTAAT 58.890 45.455 0.00 0.00 0.00 1.40
47 48 2.539302 ACCAGTAACGCCCTACCTTAA 58.461 47.619 0.00 0.00 0.00 1.85
48 49 2.236489 ACCAGTAACGCCCTACCTTA 57.764 50.000 0.00 0.00 0.00 2.69
49 50 2.234661 GTTACCAGTAACGCCCTACCTT 59.765 50.000 5.02 0.00 36.47 3.50
50 51 1.827344 GTTACCAGTAACGCCCTACCT 59.173 52.381 5.02 0.00 36.47 3.08
51 52 2.299993 GTTACCAGTAACGCCCTACC 57.700 55.000 5.02 0.00 36.47 3.18
65 66 9.533253 TTATACTTCTTTATTAGTGGCGTTACC 57.467 33.333 0.00 0.00 39.84 2.85
69 70 9.826574 TCATTTATACTTCTTTATTAGTGGCGT 57.173 29.630 0.00 0.00 0.00 5.68
92 93 9.814899 CATTCACTCTGTAGTCTTAAAGATCAT 57.185 33.333 0.00 0.00 31.97 2.45
93 94 7.761704 GCATTCACTCTGTAGTCTTAAAGATCA 59.238 37.037 0.00 0.00 31.97 2.92
94 95 7.223777 GGCATTCACTCTGTAGTCTTAAAGATC 59.776 40.741 0.00 0.00 31.97 2.75
95 96 7.044798 GGCATTCACTCTGTAGTCTTAAAGAT 58.955 38.462 0.00 0.00 31.97 2.40
96 97 6.398918 GGCATTCACTCTGTAGTCTTAAAGA 58.601 40.000 0.00 0.00 31.97 2.52
97 98 5.582665 GGGCATTCACTCTGTAGTCTTAAAG 59.417 44.000 0.00 0.00 31.97 1.85
98 99 5.488341 GGGCATTCACTCTGTAGTCTTAAA 58.512 41.667 0.00 0.00 31.97 1.52
99 100 4.381612 CGGGCATTCACTCTGTAGTCTTAA 60.382 45.833 0.00 0.00 31.97 1.85
100 101 3.130516 CGGGCATTCACTCTGTAGTCTTA 59.869 47.826 0.00 0.00 31.97 2.10
101 102 2.093973 CGGGCATTCACTCTGTAGTCTT 60.094 50.000 0.00 0.00 31.97 3.01
102 103 1.478510 CGGGCATTCACTCTGTAGTCT 59.521 52.381 0.00 0.00 31.97 3.24
103 104 1.476891 TCGGGCATTCACTCTGTAGTC 59.523 52.381 0.00 0.00 31.97 2.59
104 105 1.204941 GTCGGGCATTCACTCTGTAGT 59.795 52.381 0.00 0.00 35.91 2.73
105 106 1.471676 GGTCGGGCATTCACTCTGTAG 60.472 57.143 0.00 0.00 0.00 2.74
106 107 0.535335 GGTCGGGCATTCACTCTGTA 59.465 55.000 0.00 0.00 0.00 2.74
107 108 1.296715 GGTCGGGCATTCACTCTGT 59.703 57.895 0.00 0.00 0.00 3.41
108 109 1.811266 CGGTCGGGCATTCACTCTG 60.811 63.158 0.00 0.00 0.00 3.35
109 110 1.827399 AACGGTCGGGCATTCACTCT 61.827 55.000 0.00 0.00 0.00 3.24
110 111 1.375523 AACGGTCGGGCATTCACTC 60.376 57.895 0.00 0.00 0.00 3.51
111 112 1.671054 CAACGGTCGGGCATTCACT 60.671 57.895 0.00 0.00 0.00 3.41
112 113 2.867472 CAACGGTCGGGCATTCAC 59.133 61.111 0.00 0.00 0.00 3.18
113 114 3.053291 GCAACGGTCGGGCATTCA 61.053 61.111 4.82 0.00 0.00 2.57
114 115 3.810896 GGCAACGGTCGGGCATTC 61.811 66.667 10.39 0.00 0.00 2.67
115 116 3.936772 ATGGCAACGGTCGGGCATT 62.937 57.895 13.61 2.37 46.68 3.56
116 117 4.424711 ATGGCAACGGTCGGGCAT 62.425 61.111 13.61 13.61 44.37 4.40
119 120 4.096003 AGGATGGCAACGGTCGGG 62.096 66.667 0.00 0.00 42.51 5.14
120 121 2.819595 CAGGATGGCAACGGTCGG 60.820 66.667 0.00 0.00 42.51 4.79
121 122 1.811266 CTCAGGATGGCAACGGTCG 60.811 63.158 0.00 0.00 42.51 4.79
122 123 1.021390 CACTCAGGATGGCAACGGTC 61.021 60.000 0.00 0.00 42.51 4.79
123 124 1.003355 CACTCAGGATGGCAACGGT 60.003 57.895 0.00 0.00 42.51 4.83
124 125 1.021390 GTCACTCAGGATGGCAACGG 61.021 60.000 0.00 0.00 42.51 4.44
125 126 1.354337 CGTCACTCAGGATGGCAACG 61.354 60.000 0.00 0.00 42.51 4.10
126 127 0.320771 ACGTCACTCAGGATGGCAAC 60.321 55.000 0.00 0.00 36.16 4.17
127 128 0.396435 AACGTCACTCAGGATGGCAA 59.604 50.000 0.00 0.00 36.16 4.52
128 129 1.204704 CTAACGTCACTCAGGATGGCA 59.795 52.381 0.00 0.00 36.16 4.92
129 130 1.471676 CCTAACGTCACTCAGGATGGC 60.472 57.143 0.00 0.00 36.16 4.40
130 131 1.825474 ACCTAACGTCACTCAGGATGG 59.175 52.381 0.00 0.00 36.16 3.51
131 132 2.755655 AGACCTAACGTCACTCAGGATG 59.244 50.000 0.00 0.00 44.66 3.51
132 133 3.088789 AGACCTAACGTCACTCAGGAT 57.911 47.619 0.00 0.00 44.66 3.24
133 134 2.581216 AGACCTAACGTCACTCAGGA 57.419 50.000 0.00 0.00 44.66 3.86
134 135 2.557056 TGAAGACCTAACGTCACTCAGG 59.443 50.000 0.00 0.00 44.66 3.86
135 136 3.917329 TGAAGACCTAACGTCACTCAG 57.083 47.619 0.00 0.00 44.66 3.35
136 137 3.382227 TGTTGAAGACCTAACGTCACTCA 59.618 43.478 0.00 0.00 44.66 3.41
137 138 3.734735 GTGTTGAAGACCTAACGTCACTC 59.265 47.826 0.00 0.00 44.66 3.51
138 139 3.383825 AGTGTTGAAGACCTAACGTCACT 59.616 43.478 0.00 0.00 44.66 3.41
139 140 3.714391 AGTGTTGAAGACCTAACGTCAC 58.286 45.455 0.00 0.00 44.66 3.67
140 141 3.243636 GGAGTGTTGAAGACCTAACGTCA 60.244 47.826 0.00 0.00 44.66 4.35
141 142 3.315418 GGAGTGTTGAAGACCTAACGTC 58.685 50.000 0.00 0.00 42.32 4.34
142 143 2.288030 CGGAGTGTTGAAGACCTAACGT 60.288 50.000 0.00 0.00 0.00 3.99
143 144 2.030540 TCGGAGTGTTGAAGACCTAACG 60.031 50.000 0.00 0.00 0.00 3.18
144 145 3.005578 ACTCGGAGTGTTGAAGACCTAAC 59.994 47.826 10.41 0.00 0.00 2.34
145 146 3.005472 CACTCGGAGTGTTGAAGACCTAA 59.995 47.826 26.22 0.00 41.19 2.69
146 147 2.557056 CACTCGGAGTGTTGAAGACCTA 59.443 50.000 26.22 0.00 41.19 3.08
147 148 1.341531 CACTCGGAGTGTTGAAGACCT 59.658 52.381 26.22 0.00 41.19 3.85
148 149 1.605712 CCACTCGGAGTGTTGAAGACC 60.606 57.143 30.32 0.00 44.50 3.85
149 150 1.068741 ACCACTCGGAGTGTTGAAGAC 59.931 52.381 30.32 0.00 44.50 3.01
150 151 1.410004 ACCACTCGGAGTGTTGAAGA 58.590 50.000 30.32 0.00 44.50 2.87
151 152 2.240493 AACCACTCGGAGTGTTGAAG 57.760 50.000 30.32 19.58 44.50 3.02
152 153 2.169769 AGAAACCACTCGGAGTGTTGAA 59.830 45.455 30.32 0.00 44.50 2.69
153 154 1.760613 AGAAACCACTCGGAGTGTTGA 59.239 47.619 30.32 0.00 44.50 3.18
154 155 2.240493 AGAAACCACTCGGAGTGTTG 57.760 50.000 30.32 20.81 44.50 3.33
155 156 2.561569 CAAGAAACCACTCGGAGTGTT 58.438 47.619 30.32 21.44 44.50 3.32
156 157 1.810412 GCAAGAAACCACTCGGAGTGT 60.810 52.381 30.32 18.64 44.50 3.55
157 158 0.868406 GCAAGAAACCACTCGGAGTG 59.132 55.000 27.29 27.29 45.53 3.51
158 159 0.468226 TGCAAGAAACCACTCGGAGT 59.532 50.000 4.45 4.45 35.59 3.85
159 160 1.734465 GATGCAAGAAACCACTCGGAG 59.266 52.381 2.83 2.83 35.59 4.63
160 161 1.071542 TGATGCAAGAAACCACTCGGA 59.928 47.619 0.00 0.00 35.59 4.55
161 162 1.522668 TGATGCAAGAAACCACTCGG 58.477 50.000 0.00 0.00 38.77 4.63
162 163 2.222886 CGATGATGCAAGAAACCACTCG 60.223 50.000 0.00 0.00 0.00 4.18
163 164 3.002791 TCGATGATGCAAGAAACCACTC 58.997 45.455 0.00 0.00 0.00 3.51
164 165 3.005554 CTCGATGATGCAAGAAACCACT 58.994 45.455 0.00 0.00 0.00 4.00
165 166 2.744202 ACTCGATGATGCAAGAAACCAC 59.256 45.455 0.00 0.00 0.00 4.16
166 167 2.743664 CACTCGATGATGCAAGAAACCA 59.256 45.455 0.00 0.00 0.00 3.67
167 168 3.002791 TCACTCGATGATGCAAGAAACC 58.997 45.455 0.00 0.00 29.99 3.27
168 169 3.681897 AGTCACTCGATGATGCAAGAAAC 59.318 43.478 0.00 0.00 40.28 2.78
169 170 3.930336 AGTCACTCGATGATGCAAGAAA 58.070 40.909 0.00 0.00 40.28 2.52
170 171 3.599730 AGTCACTCGATGATGCAAGAA 57.400 42.857 0.00 0.00 40.28 2.52
171 172 3.056607 TGAAGTCACTCGATGATGCAAGA 60.057 43.478 0.00 0.00 40.28 3.02
172 173 3.256558 TGAAGTCACTCGATGATGCAAG 58.743 45.455 0.00 0.00 40.28 4.01
173 174 3.317603 TGAAGTCACTCGATGATGCAA 57.682 42.857 0.00 0.00 40.28 4.08
174 175 3.131755 AGATGAAGTCACTCGATGATGCA 59.868 43.478 0.00 0.00 40.28 3.96
175 176 3.715495 AGATGAAGTCACTCGATGATGC 58.285 45.455 0.00 0.00 40.28 3.91
176 177 4.507021 CCAAGATGAAGTCACTCGATGATG 59.493 45.833 0.00 0.00 40.28 3.07
177 178 4.161189 ACCAAGATGAAGTCACTCGATGAT 59.839 41.667 0.00 0.00 40.28 2.45
178 179 3.511540 ACCAAGATGAAGTCACTCGATGA 59.488 43.478 0.00 0.00 33.79 2.92
179 180 3.854666 ACCAAGATGAAGTCACTCGATG 58.145 45.455 0.00 0.00 0.00 3.84
180 181 3.428180 CGACCAAGATGAAGTCACTCGAT 60.428 47.826 0.00 0.00 0.00 3.59
181 182 2.095212 CGACCAAGATGAAGTCACTCGA 60.095 50.000 0.00 0.00 0.00 4.04
182 183 2.095212 TCGACCAAGATGAAGTCACTCG 60.095 50.000 0.00 0.00 0.00 4.18
183 184 3.577649 TCGACCAAGATGAAGTCACTC 57.422 47.619 0.00 0.00 0.00 3.51
184 185 4.248859 CATTCGACCAAGATGAAGTCACT 58.751 43.478 0.00 0.00 0.00 3.41
185 186 3.372206 CCATTCGACCAAGATGAAGTCAC 59.628 47.826 0.00 0.00 0.00 3.67
186 187 3.260632 TCCATTCGACCAAGATGAAGTCA 59.739 43.478 0.00 0.00 0.00 3.41
187 188 3.861840 TCCATTCGACCAAGATGAAGTC 58.138 45.455 0.00 0.00 0.00 3.01
188 189 3.981071 TCCATTCGACCAAGATGAAGT 57.019 42.857 0.00 0.00 0.00 3.01
189 190 5.449588 CCAATTCCATTCGACCAAGATGAAG 60.450 44.000 0.00 0.00 0.00 3.02
190 191 4.398988 CCAATTCCATTCGACCAAGATGAA 59.601 41.667 0.00 0.00 0.00 2.57
191 192 3.947196 CCAATTCCATTCGACCAAGATGA 59.053 43.478 0.00 0.00 0.00 2.92
192 193 3.067180 CCCAATTCCATTCGACCAAGATG 59.933 47.826 0.00 0.00 0.00 2.90
193 194 3.290710 CCCAATTCCATTCGACCAAGAT 58.709 45.455 0.00 0.00 0.00 2.40
194 195 2.620367 CCCCAATTCCATTCGACCAAGA 60.620 50.000 0.00 0.00 0.00 3.02
195 196 1.750778 CCCCAATTCCATTCGACCAAG 59.249 52.381 0.00 0.00 0.00 3.61
196 197 1.076350 ACCCCAATTCCATTCGACCAA 59.924 47.619 0.00 0.00 0.00 3.67
197 198 0.701731 ACCCCAATTCCATTCGACCA 59.298 50.000 0.00 0.00 0.00 4.02
198 199 2.721425 TACCCCAATTCCATTCGACC 57.279 50.000 0.00 0.00 0.00 4.79
199 200 3.146847 GGATACCCCAATTCCATTCGAC 58.853 50.000 0.00 0.00 34.14 4.20
200 201 2.224426 CGGATACCCCAATTCCATTCGA 60.224 50.000 0.00 0.00 34.14 3.71
201 202 2.151202 CGGATACCCCAATTCCATTCG 58.849 52.381 0.00 0.00 34.14 3.34
202 203 3.502123 TCGGATACCCCAATTCCATTC 57.498 47.619 0.00 0.00 34.14 2.67
203 204 4.141041 TCAATCGGATACCCCAATTCCATT 60.141 41.667 0.00 0.00 34.14 3.16
204 205 3.397618 TCAATCGGATACCCCAATTCCAT 59.602 43.478 0.00 0.00 34.14 3.41
205 206 2.780592 TCAATCGGATACCCCAATTCCA 59.219 45.455 0.00 0.00 34.14 3.53
206 207 3.072476 TCTCAATCGGATACCCCAATTCC 59.928 47.826 0.00 0.00 34.14 3.01
207 208 4.351874 TCTCAATCGGATACCCCAATTC 57.648 45.455 0.00 0.00 34.14 2.17
208 209 6.448369 TTATCTCAATCGGATACCCCAATT 57.552 37.500 0.00 0.00 34.14 2.32
209 210 6.642733 ATTATCTCAATCGGATACCCCAAT 57.357 37.500 0.00 0.00 34.14 3.16
210 211 6.156256 CCTATTATCTCAATCGGATACCCCAA 59.844 42.308 0.00 0.00 34.14 4.12
211 212 5.661312 CCTATTATCTCAATCGGATACCCCA 59.339 44.000 0.00 0.00 34.14 4.96
212 213 5.661759 ACCTATTATCTCAATCGGATACCCC 59.338 44.000 0.00 0.00 0.00 4.95
213 214 6.459848 CGACCTATTATCTCAATCGGATACCC 60.460 46.154 0.00 0.00 0.00 3.69
214 215 6.318144 TCGACCTATTATCTCAATCGGATACC 59.682 42.308 0.00 0.00 0.00 2.73
215 216 7.066043 ACTCGACCTATTATCTCAATCGGATAC 59.934 40.741 0.00 0.00 0.00 2.24
216 217 7.065923 CACTCGACCTATTATCTCAATCGGATA 59.934 40.741 0.00 0.00 0.00 2.59
217 218 5.946972 ACTCGACCTATTATCTCAATCGGAT 59.053 40.000 0.00 0.00 0.00 4.18
218 219 5.181433 CACTCGACCTATTATCTCAATCGGA 59.819 44.000 0.00 0.00 0.00 4.55
219 220 5.394802 CACTCGACCTATTATCTCAATCGG 58.605 45.833 0.00 0.00 0.00 4.18
220 221 5.181433 TCCACTCGACCTATTATCTCAATCG 59.819 44.000 0.00 0.00 0.00 3.34
221 222 6.576662 TCCACTCGACCTATTATCTCAATC 57.423 41.667 0.00 0.00 0.00 2.67
222 223 7.382110 CAATCCACTCGACCTATTATCTCAAT 58.618 38.462 0.00 0.00 0.00 2.57
223 224 6.738731 GCAATCCACTCGACCTATTATCTCAA 60.739 42.308 0.00 0.00 0.00 3.02
224 225 5.279006 GCAATCCACTCGACCTATTATCTCA 60.279 44.000 0.00 0.00 0.00 3.27
225 226 5.164954 GCAATCCACTCGACCTATTATCTC 58.835 45.833 0.00 0.00 0.00 2.75
226 227 4.588951 TGCAATCCACTCGACCTATTATCT 59.411 41.667 0.00 0.00 0.00 1.98
227 228 4.686554 GTGCAATCCACTCGACCTATTATC 59.313 45.833 0.00 0.00 41.35 1.75
228 229 4.632153 GTGCAATCCACTCGACCTATTAT 58.368 43.478 0.00 0.00 41.35 1.28
229 230 4.054780 GTGCAATCCACTCGACCTATTA 57.945 45.455 0.00 0.00 41.35 0.98
230 231 2.906354 GTGCAATCCACTCGACCTATT 58.094 47.619 0.00 0.00 41.35 1.73
231 232 2.604046 GTGCAATCCACTCGACCTAT 57.396 50.000 0.00 0.00 41.35 2.57
242 243 2.134789 ATGACCTTGGAGTGCAATCC 57.865 50.000 26.03 26.03 40.03 3.01
243 244 3.507233 TGAAATGACCTTGGAGTGCAATC 59.493 43.478 5.38 5.38 0.00 2.67
244 245 3.499338 TGAAATGACCTTGGAGTGCAAT 58.501 40.909 0.00 0.00 0.00 3.56
245 246 2.886523 CTGAAATGACCTTGGAGTGCAA 59.113 45.455 0.00 0.00 0.00 4.08
246 247 2.158623 ACTGAAATGACCTTGGAGTGCA 60.159 45.455 0.00 0.00 0.00 4.57
247 248 2.485814 GACTGAAATGACCTTGGAGTGC 59.514 50.000 0.00 0.00 0.00 4.40
248 249 3.077359 GGACTGAAATGACCTTGGAGTG 58.923 50.000 0.00 0.00 0.00 3.51
249 250 2.289694 CGGACTGAAATGACCTTGGAGT 60.290 50.000 0.00 0.00 0.00 3.85
250 251 2.289694 ACGGACTGAAATGACCTTGGAG 60.290 50.000 0.00 0.00 0.00 3.86
251 252 1.697432 ACGGACTGAAATGACCTTGGA 59.303 47.619 0.00 0.00 0.00 3.53
252 253 2.185004 ACGGACTGAAATGACCTTGG 57.815 50.000 0.00 0.00 0.00 3.61
253 254 3.871594 GGATACGGACTGAAATGACCTTG 59.128 47.826 0.00 0.00 0.00 3.61
254 255 3.775316 AGGATACGGACTGAAATGACCTT 59.225 43.478 0.00 0.00 46.39 3.50
255 256 3.375699 AGGATACGGACTGAAATGACCT 58.624 45.455 0.00 0.00 46.39 3.85
256 257 3.821421 AGGATACGGACTGAAATGACC 57.179 47.619 0.00 0.00 46.39 4.02
257 258 4.935808 ACAAAGGATACGGACTGAAATGAC 59.064 41.667 0.00 0.00 46.39 3.06
258 259 5.160607 ACAAAGGATACGGACTGAAATGA 57.839 39.130 0.00 0.00 46.39 2.57
259 260 5.880054 AACAAAGGATACGGACTGAAATG 57.120 39.130 0.00 0.00 46.39 2.32
261 262 9.754382 GTATATAACAAAGGATACGGACTGAAA 57.246 33.333 0.00 0.00 46.39 2.69
262 263 9.139734 AGTATATAACAAAGGATACGGACTGAA 57.860 33.333 0.00 0.00 46.39 3.02
263 264 8.701908 AGTATATAACAAAGGATACGGACTGA 57.298 34.615 0.00 0.00 46.39 3.41
264 265 9.760077 AAAGTATATAACAAAGGATACGGACTG 57.240 33.333 0.00 0.00 46.39 3.51
265 266 9.760077 CAAAGTATATAACAAAGGATACGGACT 57.240 33.333 0.00 0.00 46.39 3.85
266 267 9.754382 TCAAAGTATATAACAAAGGATACGGAC 57.246 33.333 0.00 0.00 46.39 4.79
273 274 9.905713 AGAGCATTCAAAGTATATAACAAAGGA 57.094 29.630 0.00 0.00 0.00 3.36
278 279 9.890629 AGTCAAGAGCATTCAAAGTATATAACA 57.109 29.630 0.00 0.00 0.00 2.41
283 284 9.383519 CCTAAAGTCAAGAGCATTCAAAGTATA 57.616 33.333 0.00 0.00 0.00 1.47
284 285 8.103305 TCCTAAAGTCAAGAGCATTCAAAGTAT 58.897 33.333 0.00 0.00 0.00 2.12
285 286 7.450074 TCCTAAAGTCAAGAGCATTCAAAGTA 58.550 34.615 0.00 0.00 0.00 2.24
286 287 6.299141 TCCTAAAGTCAAGAGCATTCAAAGT 58.701 36.000 0.00 0.00 0.00 2.66
287 288 6.808008 TCCTAAAGTCAAGAGCATTCAAAG 57.192 37.500 0.00 0.00 0.00 2.77
288 289 8.103305 ACTATCCTAAAGTCAAGAGCATTCAAA 58.897 33.333 0.00 0.00 0.00 2.69
289 290 7.550551 CACTATCCTAAAGTCAAGAGCATTCAA 59.449 37.037 0.00 0.00 0.00 2.69
290 291 7.044181 CACTATCCTAAAGTCAAGAGCATTCA 58.956 38.462 0.00 0.00 0.00 2.57
291 292 7.223777 GTCACTATCCTAAAGTCAAGAGCATTC 59.776 40.741 0.00 0.00 0.00 2.67
292 293 7.044798 GTCACTATCCTAAAGTCAAGAGCATT 58.955 38.462 0.00 0.00 0.00 3.56
293 294 6.407525 GGTCACTATCCTAAAGTCAAGAGCAT 60.408 42.308 0.00 0.00 0.00 3.79
294 295 5.105310 GGTCACTATCCTAAAGTCAAGAGCA 60.105 44.000 0.00 0.00 0.00 4.26
295 296 5.128008 AGGTCACTATCCTAAAGTCAAGAGC 59.872 44.000 0.00 0.00 33.04 4.09
296 297 6.783708 AGGTCACTATCCTAAAGTCAAGAG 57.216 41.667 0.00 0.00 33.04 2.85
297 298 6.070767 CCAAGGTCACTATCCTAAAGTCAAGA 60.071 42.308 0.00 0.00 34.56 3.02
298 299 6.109359 CCAAGGTCACTATCCTAAAGTCAAG 58.891 44.000 0.00 0.00 34.56 3.02
299 300 5.045869 CCCAAGGTCACTATCCTAAAGTCAA 60.046 44.000 0.00 0.00 34.56 3.18
300 301 4.469945 CCCAAGGTCACTATCCTAAAGTCA 59.530 45.833 0.00 0.00 34.56 3.41
301 302 4.470304 ACCCAAGGTCACTATCCTAAAGTC 59.530 45.833 0.00 0.00 34.56 3.01
302 303 4.436079 ACCCAAGGTCACTATCCTAAAGT 58.564 43.478 0.00 0.00 34.56 2.66
303 304 5.070580 CCTACCCAAGGTCACTATCCTAAAG 59.929 48.000 0.00 0.00 40.94 1.85
304 305 4.966805 CCTACCCAAGGTCACTATCCTAAA 59.033 45.833 0.00 0.00 40.94 1.85
305 306 4.553678 CCTACCCAAGGTCACTATCCTAA 58.446 47.826 0.00 0.00 40.94 2.69
306 307 3.116862 CCCTACCCAAGGTCACTATCCTA 60.117 52.174 0.00 0.00 44.90 2.94
307 308 2.360423 CCCTACCCAAGGTCACTATCCT 60.360 54.545 0.00 0.00 44.90 3.24
308 309 2.047830 CCCTACCCAAGGTCACTATCC 58.952 57.143 0.00 0.00 44.90 2.59
309 310 2.434702 CACCCTACCCAAGGTCACTATC 59.565 54.545 0.00 0.00 44.90 2.08
310 311 2.225805 ACACCCTACCCAAGGTCACTAT 60.226 50.000 0.00 0.00 44.90 2.12
311 312 1.150560 ACACCCTACCCAAGGTCACTA 59.849 52.381 0.00 0.00 44.90 2.74
312 313 0.104620 ACACCCTACCCAAGGTCACT 60.105 55.000 0.00 0.00 44.90 3.41
313 314 0.323957 GACACCCTACCCAAGGTCAC 59.676 60.000 0.00 0.00 44.90 3.67
314 315 0.192566 AGACACCCTACCCAAGGTCA 59.807 55.000 0.00 0.00 44.90 4.02
315 316 2.108970 CTAGACACCCTACCCAAGGTC 58.891 57.143 0.00 0.00 44.90 3.85
316 317 1.273666 CCTAGACACCCTACCCAAGGT 60.274 57.143 0.00 0.00 44.90 3.50
317 318 1.273666 ACCTAGACACCCTACCCAAGG 60.274 57.143 0.00 0.00 46.09 3.61
318 319 2.108970 GACCTAGACACCCTACCCAAG 58.891 57.143 0.00 0.00 0.00 3.61
319 320 1.433985 TGACCTAGACACCCTACCCAA 59.566 52.381 0.00 0.00 0.00 4.12
320 321 1.006758 CTGACCTAGACACCCTACCCA 59.993 57.143 0.00 0.00 0.00 4.51
321 322 1.688627 CCTGACCTAGACACCCTACCC 60.689 61.905 0.00 0.00 0.00 3.69
322 323 1.777941 CCTGACCTAGACACCCTACC 58.222 60.000 0.00 0.00 0.00 3.18
323 324 1.112950 GCCTGACCTAGACACCCTAC 58.887 60.000 0.00 0.00 0.00 3.18
324 325 0.032416 GGCCTGACCTAGACACCCTA 60.032 60.000 0.00 0.00 34.51 3.53
325 326 1.306226 GGCCTGACCTAGACACCCT 60.306 63.158 0.00 0.00 34.51 4.34
326 327 3.310652 GGCCTGACCTAGACACCC 58.689 66.667 0.00 0.00 34.51 4.61
336 337 1.903183 GGATAGGGTCATAGGCCTGAC 59.097 57.143 17.99 16.31 43.90 3.51
337 338 1.795786 AGGATAGGGTCATAGGCCTGA 59.204 52.381 17.99 2.17 0.00 3.86
338 339 2.334006 AGGATAGGGTCATAGGCCTG 57.666 55.000 17.99 0.00 0.00 4.85
339 340 3.278870 TCTAGGATAGGGTCATAGGCCT 58.721 50.000 11.78 11.78 40.68 5.19
340 341 3.759815 TCTAGGATAGGGTCATAGGCC 57.240 52.381 0.00 0.00 40.68 5.19
341 342 5.137412 AGATCTAGGATAGGGTCATAGGC 57.863 47.826 0.00 0.00 40.68 3.93
342 343 7.237982 CCATAGATCTAGGATAGGGTCATAGG 58.762 46.154 15.84 0.00 40.68 2.57
343 344 6.719370 GCCATAGATCTAGGATAGGGTCATAG 59.281 46.154 15.84 0.00 41.44 2.23
344 345 6.162241 TGCCATAGATCTAGGATAGGGTCATA 59.838 42.308 15.84 0.00 39.78 2.15
345 346 5.043055 TGCCATAGATCTAGGATAGGGTCAT 60.043 44.000 15.84 0.00 39.78 3.06
346 347 4.294970 TGCCATAGATCTAGGATAGGGTCA 59.705 45.833 15.84 1.82 39.78 4.02
347 348 4.873010 TGCCATAGATCTAGGATAGGGTC 58.127 47.826 15.84 0.00 39.78 4.46
348 349 4.974933 TGCCATAGATCTAGGATAGGGT 57.025 45.455 15.84 0.00 39.78 4.34
349 350 5.664908 ACAATGCCATAGATCTAGGATAGGG 59.335 44.000 15.84 2.32 39.78 3.53
350 351 6.382282 TGACAATGCCATAGATCTAGGATAGG 59.618 42.308 15.84 9.22 39.78 2.57
351 352 7.415592 TGACAATGCCATAGATCTAGGATAG 57.584 40.000 15.84 0.67 41.04 2.08
352 353 6.382282 CCTGACAATGCCATAGATCTAGGATA 59.618 42.308 15.84 4.69 0.00 2.59
353 354 5.189342 CCTGACAATGCCATAGATCTAGGAT 59.811 44.000 15.84 3.24 0.00 3.24
354 355 4.529769 CCTGACAATGCCATAGATCTAGGA 59.470 45.833 15.84 0.78 0.00 2.94
355 356 4.829968 CCTGACAATGCCATAGATCTAGG 58.170 47.826 8.70 8.06 0.00 3.02
356 357 4.252073 GCCTGACAATGCCATAGATCTAG 58.748 47.826 8.70 0.00 0.00 2.43
357 358 3.647590 TGCCTGACAATGCCATAGATCTA 59.352 43.478 4.57 4.57 0.00 1.98
358 359 2.440627 TGCCTGACAATGCCATAGATCT 59.559 45.455 0.00 0.00 0.00 2.75
359 360 2.551459 GTGCCTGACAATGCCATAGATC 59.449 50.000 0.00 0.00 0.00 2.75
360 361 2.174210 AGTGCCTGACAATGCCATAGAT 59.826 45.455 0.00 0.00 0.00 1.98
361 362 1.561076 AGTGCCTGACAATGCCATAGA 59.439 47.619 0.00 0.00 0.00 1.98
362 363 1.674441 CAGTGCCTGACAATGCCATAG 59.326 52.381 0.00 0.00 37.57 2.23
363 364 1.753930 CAGTGCCTGACAATGCCATA 58.246 50.000 0.00 0.00 37.57 2.74
364 365 2.575108 CAGTGCCTGACAATGCCAT 58.425 52.632 0.00 0.00 37.57 4.40
365 366 4.084265 CAGTGCCTGACAATGCCA 57.916 55.556 0.00 0.00 37.57 4.92
369 370 3.058160 GCCGCAGTGCCTGACAAT 61.058 61.111 10.11 0.00 32.44 2.71
433 434 0.950555 CGGGACATGGCATACGATGG 60.951 60.000 0.00 0.00 0.00 3.51
444 445 5.957798 TGAACTAAGTTAGTACGGGACATG 58.042 41.667 15.84 0.00 38.26 3.21
449 450 4.179298 GCCTTGAACTAAGTTAGTACGGG 58.821 47.826 15.84 15.07 38.26 5.28
452 453 3.615937 GCCGCCTTGAACTAAGTTAGTAC 59.384 47.826 15.84 1.98 38.26 2.73
453 454 3.368739 GGCCGCCTTGAACTAAGTTAGTA 60.369 47.826 15.84 0.00 38.26 1.82
454 455 2.614734 GGCCGCCTTGAACTAAGTTAGT 60.615 50.000 9.85 9.85 41.73 2.24
623 1737 2.750301 ACGTTTTCTTTTGCGGAGAC 57.250 45.000 0.00 0.00 0.00 3.36
641 1758 7.306213 TCTATTATAGAGAGCACACGCATTAC 58.694 38.462 0.00 0.00 42.27 1.89
798 4196 1.483316 GGCAACTTACAAAACGTGGC 58.517 50.000 0.00 0.00 0.00 5.01
878 4289 3.117663 AGGACCCACAAGAAGTTGCTTTA 60.118 43.478 0.00 0.00 37.14 1.85
882 4294 2.561478 TAGGACCCACAAGAAGTTGC 57.439 50.000 0.00 0.00 37.14 4.17
895 4309 9.047947 ACTGGGAATGTATTAATCTATAGGACC 57.952 37.037 0.00 0.00 0.00 4.46
904 4318 9.113838 CCTATGCATACTGGGAATGTATTAATC 57.886 37.037 1.16 0.00 32.77 1.75
908 4322 5.222109 TGCCTATGCATACTGGGAATGTATT 60.222 40.000 13.30 0.00 44.23 1.89
964 8441 2.224042 TGGTAGCTATTGTCGCAGATGG 60.224 50.000 0.00 0.00 40.67 3.51
981 8458 1.914764 GGTCTCCGGGTTGGTGGTA 60.915 63.158 0.00 0.00 39.52 3.25
996 8473 2.584608 CGGGAGGACACCATGGTC 59.415 66.667 16.53 4.44 37.06 4.02
1288 8784 2.716828 CGTCGACGATGTTTGCGCT 61.717 57.895 33.35 0.00 43.02 5.92
1301 8797 3.733960 CGGCACTGACTCCGTCGA 61.734 66.667 0.00 0.00 40.72 4.20
1370 8866 3.431922 CATTCCTGCACCATCAATGTC 57.568 47.619 0.00 0.00 0.00 3.06
1418 8962 3.678548 GGCAGCACGTATATTTAGTAGGC 59.321 47.826 0.00 0.00 0.00 3.93
1500 9074 0.811219 GCAGCAGCCATGATACACGA 60.811 55.000 0.00 0.00 33.58 4.35
1586 9167 6.814506 AAAACATGATCAGACCAAAGAGAG 57.185 37.500 0.00 0.00 0.00 3.20
1613 9194 5.833131 TGACTAGAAGCCCACAATTCTTTTT 59.167 36.000 0.00 0.00 37.05 1.94
1618 9199 3.674997 TGTGACTAGAAGCCCACAATTC 58.325 45.455 0.00 0.00 36.69 2.17
1659 9240 3.376859 TGGCAAACTGTGTTGTGAGTAAG 59.623 43.478 0.00 0.00 0.00 2.34
1689 9270 6.949715 AGGGAAATTTATGCAACATTCACAT 58.050 32.000 0.00 0.00 0.00 3.21
1834 9416 4.540824 GACATCTCTTGCAACAAGTTTCC 58.459 43.478 0.00 0.00 0.00 3.13
1865 9448 5.393461 GGACATGTCAATTAGCCTTTTCAGG 60.393 44.000 26.47 0.00 44.28 3.86
2099 9687 8.886369 AGATATATCTAGAGTGTGAGTACACCT 58.114 37.037 13.76 6.81 45.60 4.00
2104 9692 9.857957 CGTGTAGATATATCTAGAGTGTGAGTA 57.142 37.037 20.55 0.00 39.87 2.59
2105 9693 8.369424 ACGTGTAGATATATCTAGAGTGTGAGT 58.631 37.037 20.55 10.71 39.87 3.41
2106 9694 8.766000 ACGTGTAGATATATCTAGAGTGTGAG 57.234 38.462 20.55 10.22 39.87 3.51
2107 9695 7.818446 GGACGTGTAGATATATCTAGAGTGTGA 59.182 40.741 20.55 0.00 39.87 3.58
2108 9696 7.603024 TGGACGTGTAGATATATCTAGAGTGTG 59.397 40.741 20.55 12.47 39.87 3.82
2109 9697 7.677892 TGGACGTGTAGATATATCTAGAGTGT 58.322 38.462 20.55 18.94 39.87 3.55
2110 9698 8.549338 TTGGACGTGTAGATATATCTAGAGTG 57.451 38.462 20.55 16.45 39.87 3.51
2111 9699 9.168451 CATTGGACGTGTAGATATATCTAGAGT 57.832 37.037 20.55 18.83 39.87 3.24
2112 9700 9.384764 TCATTGGACGTGTAGATATATCTAGAG 57.615 37.037 20.55 16.37 39.87 2.43
2113 9701 9.907229 ATCATTGGACGTGTAGATATATCTAGA 57.093 33.333 20.55 17.26 39.87 2.43
2114 9702 9.943163 CATCATTGGACGTGTAGATATATCTAG 57.057 37.037 20.55 12.72 39.87 2.43
2115 9703 8.406297 GCATCATTGGACGTGTAGATATATCTA 58.594 37.037 16.95 16.95 38.32 1.98
2116 9704 7.093771 TGCATCATTGGACGTGTAGATATATCT 60.094 37.037 18.99 18.99 40.86 1.98
2117 9705 7.035612 TGCATCATTGGACGTGTAGATATATC 58.964 38.462 4.42 4.42 0.00 1.63
2118 9706 6.935167 TGCATCATTGGACGTGTAGATATAT 58.065 36.000 0.00 0.00 0.00 0.86
2119 9707 6.339587 TGCATCATTGGACGTGTAGATATA 57.660 37.500 0.00 0.00 0.00 0.86
2206 9794 9.265862 ACCCATGGATAAAATTGTCATTCTTAA 57.734 29.630 15.22 0.00 0.00 1.85
2211 9799 7.069826 CCTGTACCCATGGATAAAATTGTCATT 59.930 37.037 15.22 0.00 0.00 2.57
2251 9839 2.024176 ATCCTGCCCATACGGATACA 57.976 50.000 0.00 0.00 35.84 2.29
2265 9853 8.084073 CAGGTATAAAATTGTGCCAATATCCTG 58.916 37.037 1.52 0.00 0.00 3.86
2269 9857 6.446318 CGCAGGTATAAAATTGTGCCAATAT 58.554 36.000 1.52 0.00 0.00 1.28
2292 9880 4.355549 TGTAGGGTATGGGGTATTATCCG 58.644 47.826 0.00 0.00 0.00 4.18
2294 9882 6.886178 ACATGTAGGGTATGGGGTATTATC 57.114 41.667 0.00 0.00 0.00 1.75
2299 9887 5.540808 ACTTAACATGTAGGGTATGGGGTA 58.459 41.667 0.00 0.00 0.00 3.69
2314 9902 4.680708 CGTGCCCTACTCATGACTTAACAT 60.681 45.833 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.