AutoCloner

Multiple sequence alignment - TraesCS1D01G362100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G362100	chr1D	100.000	2426	0	0	1	2426	444525459	444523034	0.000000e+00	4481.0
1	TraesCS1D01G362100	chr1D	84.012	1032	108	27	1398	2391	444780777	444779765	0.000000e+00	939.0
2	TraesCS1D01G362100	chr1D	80.367	1253	164	51	449	1643	444730597	444729369	0.000000e+00	876.0
3	TraesCS1D01G362100	chr1D	80.367	1253	164	51	449	1643	444789804	444788576	0.000000e+00	876.0
4	TraesCS1D01G362100	chr1D	80.517	1006	113	29	423	1372	444631427	444630449	0.000000e+00	695.0
5	TraesCS1D01G362100	chr1D	92.706	425	28	2	1	424	444723801	444723379	5.730000e-171	610.0
6	TraesCS1D01G362100	chr1D	92.706	425	28	2	1	424	444783009	444782587	5.730000e-171	610.0
7	TraesCS1D01G362100	chr1D	84.762	315	31	9	69	383	444791723	444791426	1.410000e-77	300.0
8	TraesCS1D01G362100	chr1D	93.467	199	9	3	1445	1642	444630419	444630224	2.360000e-75	292.0
9	TraesCS1D01G362100	chr1B	89.132	1785	115	27	1	1738	604660687	604658935	0.000000e+00	2148.0
10	TraesCS1D01G362100	chr1B	83.600	1000	133	15	1145	2135	604746764	604745787	0.000000e+00	909.0
11	TraesCS1D01G362100	chr1B	87.564	780	62	16	784	1542	604705683	604704918	0.000000e+00	870.0
12	TraesCS1D01G362100	chr1B	87.651	664	50	9	1773	2411	604658816	604658160	0.000000e+00	743.0
13	TraesCS1D01G362100	chr1B	90.792	543	35	4	1	532	604707642	604707104	0.000000e+00	712.0
14	TraesCS1D01G362100	chr1B	80.983	773	98	24	901	1645	604701503	604700752	3.500000e-158	568.0
15	TraesCS1D01G362100	chr1B	80.134	599	87	14	1552	2128	604704704	604704116	3.730000e-113	418.0
16	TraesCS1D01G362100	chr1B	94.574	258	8	2	522	773	604706026	604705769	6.290000e-106	394.0
17	TraesCS1D01G362100	chr1B	82.892	415	48	14	1236	1645	604739804	604739408	3.840000e-93	351.0
18	TraesCS1D01G362100	chr1B	89.051	274	26	3	2122	2391	604745770	604745497	1.070000e-88	337.0
19	TraesCS1D01G362100	chr1B	88.806	268	25	3	2127	2391	604704086	604703821	8.370000e-85	324.0
20	TraesCS1D01G362100	chr1B	83.175	315	37	8	69	383	604750798	604750500	8.550000e-70	274.0
21	TraesCS1D01G362100	chr1B	80.161	373	40	12	762	1110	604740175	604739813	5.180000e-62	248.0
22	TraesCS1D01G362100	chr1B	79.679	374	43	12	762	1110	604678031	604677666	3.120000e-59	239.0
23	TraesCS1D01G362100	chr1B	93.220	59	4	0	1403	1461	604658883	604658825	1.190000e-13	87.9
24	TraesCS1D01G362100	chr1A	93.631	785	28	9	1643	2426	540117006	540116243	0.000000e+00	1153.0
25	TraesCS1D01G362100	chr1A	89.266	531	40	8	1	519	540118035	540117510	0.000000e+00	649.0
26	TraesCS1D01G362100	chr1A	77.466	892	139	37	527	1372	540125249	540124374	6.070000e-131	477.0
27	TraesCS1D01G362100	chr1A	90.323	155	11	2	1495	1645	540124258	540124104	1.470000e-47	200.0
28	TraesCS1D01G362100	chr1A	90.210	143	10	3	65	205	540129480	540129340	1.480000e-42	183.0
29	TraesCS1D01G362100	chr2A	97.087	103	3	0	2324	2426	12834087	12834189	8.920000e-40	174.0
30	TraesCS1D01G362100	chr3A	76.433	157	30	7	1704	1858	8021756	8021605	7.190000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G362100	chr1D	444523034	444525459	2425	True	4481.000000	4481	100.000000	1	2426	1	chr1D.!!$R1	2425
1	TraesCS1D01G362100	chr1D	444729369	444730597	1228	True	876.000000	876	80.367000	449	1643	1	chr1D.!!$R3	1194
2	TraesCS1D01G362100	chr1D	444779765	444783009	3244	True	774.500000	939	88.359000	1	2391	2	chr1D.!!$R5	2390
3	TraesCS1D01G362100	chr1D	444788576	444791723	3147	True	588.000000	876	82.564500	69	1643	2	chr1D.!!$R6	1574
4	TraesCS1D01G362100	chr1D	444630224	444631427	1203	True	493.500000	695	86.992000	423	1642	2	chr1D.!!$R4	1219
5	TraesCS1D01G362100	chr1B	604658160	604660687	2527	True	992.966667	2148	90.001000	1	2411	3	chr1B.!!$R2	2410
6	TraesCS1D01G362100	chr1B	604700752	604707642	6890	True	547.666667	870	87.142167	1	2391	6	chr1B.!!$R3	2390
7	TraesCS1D01G362100	chr1B	604745497	604750798	5301	True	506.666667	909	85.275333	69	2391	3	chr1B.!!$R5	2322
8	TraesCS1D01G362100	chr1B	604739408	604740175	767	True	299.500000	351	81.526500	762	1645	2	chr1B.!!$R4	883
9	TraesCS1D01G362100	chr1A	540116243	540118035	1792	True	901.000000	1153	91.448500	1	2426	2	chr1A.!!$R2	2425
10	TraesCS1D01G362100	chr1A	540124104	540125249	1145	True	338.500000	477	83.894500	527	1645	2	chr1A.!!$R3	1118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
998	10690	0.037326	AAGAAGCATCCGAGCGACAA	60.037	50.0	0.0	0.0	40.15	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1863	12180	1.193874	CGTCCAAACTAACGGTCAAGC	59.806	52.381	0.0	0.0	35.32	4.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	123	5.122082	GCATGGCAAAAGCTAAATTAAAGCA	59.878	36.000	13.50	0.00	42.62	3.91
122	124	6.183360	GCATGGCAAAAGCTAAATTAAAGCAT	60.183	34.615	13.50	0.96	42.62	3.79
161	163	9.309516	GTAAATATAGTCGATGGAAGTGACAAA	57.690	33.333	0.00	0.00	35.09	2.83
202	204	2.017049	CGATTCAAAGGCCACCCTAAG	58.983	52.381	5.01	0.00	41.90	2.18
203	205	2.355716	CGATTCAAAGGCCACCCTAAGA	60.356	50.000	5.01	0.00	41.90	2.10
259	261	1.087771	GGGGCGTCGACGATTCAATT	61.088	55.000	39.74	0.00	43.02	2.32
280	282	2.235402	TGGAAATAGGAGGGTGTCGTTC	59.765	50.000	0.00	0.00	0.00	3.95
350	353	2.227388	CACACAAGGAATCTCCAAGTGC	59.773	50.000	14.00	0.00	43.13	4.40
395	398	3.160679	CCAAGGAGTGGTGAGGAAAAT	57.839	47.619	0.00	0.00	43.20	1.82
490	3772	6.724351	AGGAATTATCATATGCTATGTGCCA	58.276	36.000	0.00	0.00	42.00	4.92
538	5128	8.820831	CCTTATTGACTTATGAGGATATCAGGT	58.179	37.037	4.83	0.00	42.53	4.00
609	5199	4.122046	AGCGTGTAGTCCGTTTTACTTTT	58.878	39.130	0.00	0.00	0.00	2.27
681	5280	7.278868	CAGACTAGTATCTCCGCAAAAGAAAAT	59.721	37.037	0.00	0.00	0.00	1.82
781	5496	8.753175	GCCGAAGTACATTGTACTAATTAAGAG	58.247	37.037	25.62	12.19	0.00	2.85
782	5497	9.798994	CCGAAGTACATTGTACTAATTAAGAGT	57.201	33.333	25.62	10.09	0.00	3.24
815	5534	1.315690	TTAGGTAGAGCCCACGATCG	58.684	55.000	14.88	14.88	38.26	3.69
819	5538	2.093106	GGTAGAGCCCACGATCGATAT	58.907	52.381	24.34	2.27	0.00	1.63
828	6232	1.794701	CACGATCGATATGTTGCCTGG	59.205	52.381	24.34	0.00	0.00	4.45
836	6437	3.310774	CGATATGTTGCCTGGCATATAGC	59.689	47.826	24.03	22.62	38.76	2.97
885	6486	1.656652	AATCTGTATGCACGTGAGCC	58.343	50.000	22.23	1.56	0.00	4.70
949	10621	5.491323	TGATACATTCCCGGTATGCATAA	57.509	39.130	8.28	0.00	31.84	1.90
982	10654	2.303022	GGTCCAACTCATCCACTCAAGA	59.697	50.000	0.00	0.00	0.00	3.02
989	10661	3.204526	CTCATCCACTCAAGAAGCATCC	58.795	50.000	0.00	0.00	0.00	3.51
991	10663	1.266178	TCCACTCAAGAAGCATCCGA	58.734	50.000	0.00	0.00	0.00	4.55
996	10688	0.458543	TCAAGAAGCATCCGAGCGAC	60.459	55.000	0.00	0.00	40.15	5.19
998	10690	0.037326	AAGAAGCATCCGAGCGACAA	60.037	50.000	0.00	0.00	40.15	3.18
999	10691	0.176680	AGAAGCATCCGAGCGACAAT	59.823	50.000	0.00	0.00	40.15	2.71
1031	10723	2.436292	CGTCCTCCTCCTCGTCGT	60.436	66.667	0.00	0.00	0.00	4.34
1045	10737	2.437895	TCGTCGCGATCCTCCTGT	60.438	61.111	14.06	0.00	0.00	4.00
1143	10948	2.358615	GGTGGCGATCACTGCACA	60.359	61.111	8.78	0.00	45.38	4.57
1205	11016	3.878667	GGGAAGGATGAGCCCGGG	61.879	72.222	19.09	19.09	37.37	5.73
1277	11088	0.881796	TGTCTGAGAGTCGCGTTCAT	59.118	50.000	5.77	0.00	0.00	2.57
1380	11538	2.388232	CCGCGCTTGTCTTGTACCC	61.388	63.158	5.56	0.00	0.00	3.69
1381	11539	1.374252	CGCGCTTGTCTTGTACCCT	60.374	57.895	5.56	0.00	0.00	4.34
1382	11540	0.949105	CGCGCTTGTCTTGTACCCTT	60.949	55.000	5.56	0.00	0.00	3.95
1384	11542	2.629051	GCGCTTGTCTTGTACCCTTAT	58.371	47.619	0.00	0.00	0.00	1.73
1446	11634	3.207669	CAGGAATGCGGCTGAGGC	61.208	66.667	0.00	0.00	37.82	4.70
1504	11694	8.848474	ATATACGTGCTGCCTAAATAAATCTT	57.152	30.769	0.00	0.00	0.00	2.40
1566	11793	2.959507	TGCACACGTGTATCATAGCT	57.040	45.000	22.90	0.00	0.00	3.32
1603	11838	3.998341	TGGTCGTCTAAATAAGTTGTGGC	59.002	43.478	0.00	0.00	0.00	5.01
1635	11870	3.722555	ATTGTAAGTGATGTGTTCGCG	57.277	42.857	0.00	0.00	39.93	5.87
1645	11880	1.281656	GTGTTCGCGTCCCCTTTTG	59.718	57.895	5.77	0.00	0.00	2.44
1647	11882	0.106335	TGTTCGCGTCCCCTTTTGTA	59.894	50.000	5.77	0.00	0.00	2.41
1716	11951	7.427989	AATTCAATTCTGGATTTGCTACCAT	57.572	32.000	0.00	0.00	35.54	3.55
1726	11961	6.430864	TGGATTTGCTACCATATTTCTTGGA	58.569	36.000	0.00	0.00	37.69	3.53
1730	11965	3.202906	GCTACCATATTTCTTGGACGCA	58.797	45.455	0.00	0.00	37.69	5.24
1732	11967	2.365582	ACCATATTTCTTGGACGCACC	58.634	47.619	0.00	0.00	37.69	5.01
1748	11983	5.049267	GGACGCACCAAAAATCTACTGTTTA	60.049	40.000	0.00	0.00	38.79	2.01
1750	11985	5.151389	CGCACCAAAAATCTACTGTTTACC	58.849	41.667	0.00	0.00	0.00	2.85
1752	11987	6.514376	CGCACCAAAAATCTACTGTTTACCTT	60.514	38.462	0.00	0.00	0.00	3.50
1789	12106	7.106890	TGATAAACACTTATGACCGATTTGGA	58.893	34.615	0.00	0.00	42.00	3.53
1792	12109	4.906618	ACACTTATGACCGATTTGGAACT	58.093	39.130	0.00	0.00	42.00	3.01
1801	12118	5.182380	TGACCGATTTGGAACTGATTAAACC	59.818	40.000	0.00	0.00	42.00	3.27
1807	12124	9.632807	CGATTTGGAACTGATTAAACCAATTTA	57.367	29.630	0.00	0.00	39.75	1.40
1857	12174	2.881513	ACGTGGCACATAATTGTCAACA	59.118	40.909	19.09	0.00	44.52	3.33
1859	12176	3.233578	GTGGCACATAATTGTCAACACG	58.766	45.455	13.86	0.00	44.52	4.49
1861	12178	2.486203	GGCACATAATTGTCAACACGGA	59.514	45.455	0.00	0.00	32.34	4.69
1863	12180	4.097714	GCACATAATTGTCAACACGGATG	58.902	43.478	0.00	0.00	32.34	3.51
1864	12181	4.097714	CACATAATTGTCAACACGGATGC	58.902	43.478	0.00	0.00	32.34	3.91
1911	12228	0.180406	ACCCATCAGCACCGTTATCC	59.820	55.000	0.00	0.00	0.00	2.59
1935	12252	5.388599	TGAAACCTTCTTCTCCCTTTCTT	57.611	39.130	0.00	0.00	0.00	2.52
1955	12272	4.278170	TCTTTGTGTGGCATTTCTTCGAAT	59.722	37.500	0.00	0.00	0.00	3.34
1989	12306	0.882927	GCAGGTGCAGTACGGAACAA	60.883	55.000	6.46	0.00	41.59	2.83
1994	12311	3.007070	GCAGTACGGAACAACGGCG	62.007	63.158	4.80	4.80	38.39	6.46
2086	12403	1.893808	CCCGATTGAATCCCTGCCG	60.894	63.158	0.00	0.00	0.00	5.69
2117	12434	1.425031	CATGTGTCGCACCAATCCG	59.575	57.895	7.38	0.00	32.73	4.18
2159	12507	1.825474	CTACCCGACACATCTCCTTGT	59.175	52.381	0.00	0.00	0.00	3.16
2234	12582	0.968901	CATGAATGCCCAGGTGCAGT	60.969	55.000	8.40	5.78	45.93	4.40
2235	12583	0.968901	ATGAATGCCCAGGTGCAGTG	60.969	55.000	7.50	0.00	45.93	3.66

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	123	8.242053	CGACTATATTTACCGACCTTGTCATAT	58.758	37.037	0.00	0.00	32.09	1.78
122	124	7.445096	TCGACTATATTTACCGACCTTGTCATA	59.555	37.037	0.00	0.00	32.09	2.15
161	163	4.641541	TCGACAATCAATCCAATTGCATCT	59.358	37.500	0.00	0.00	40.05	2.90
202	204	0.458669	TACTCTCGGCCCGTCATTTC	59.541	55.000	1.63	0.00	0.00	2.17
203	205	0.175073	GTACTCTCGGCCCGTCATTT	59.825	55.000	1.63	0.00	0.00	2.32
241	243	0.026285	CAATTGAATCGTCGACGCCC	59.974	55.000	32.19	21.85	39.60	6.13
259	261	1.946984	ACGACACCCTCCTATTTCCA	58.053	50.000	0.00	0.00	0.00	3.53
280	282	4.707030	TTTAGGCTTGCACATGATTCTG	57.293	40.909	0.00	0.00	0.00	3.02
350	353	5.298527	AGGTTCAGTTTAACTTTTTCCTCCG	59.701	40.000	0.00	0.00	0.00	4.63
395	398	1.347707	CCTTGGAGGCTCAGTGTAACA	59.652	52.381	17.69	0.00	41.43	2.41
490	3772	2.354805	CCGCCTTGAACTAAGTTAGGCT	60.355	50.000	14.36	0.00	42.10	4.58
538	5128	4.141937	GCCTACACAGACCAGATCACATTA	60.142	45.833	0.00	0.00	0.00	1.90
609	5199	8.644374	AGTGAACATGCTTAAACCCTTAAATA	57.356	30.769	0.00	0.00	0.00	1.40
681	5280	8.630037	TCATTTTCTATTATAGAGAGCACACGA	58.370	33.333	2.00	0.00	35.96	4.35
815	5534	4.889832	GCTATATGCCAGGCAACATATC	57.110	45.455	20.84	10.91	43.62	1.63
828	6232	4.082517	TCTCATCAACGAGAGGCTATATGC	60.083	45.833	0.00	0.00	37.12	3.14
885	6486	4.003648	AGTTGTTTTGAGAGGCGATTAGG	58.996	43.478	0.00	0.00	0.00	2.69
982	10654	2.138320	CATATTGTCGCTCGGATGCTT	58.862	47.619	0.00	0.00	0.00	3.91
989	10661	1.202417	AGGACACCATATTGTCGCTCG	60.202	52.381	2.26	0.00	45.95	5.03
991	10663	1.831106	TGAGGACACCATATTGTCGCT	59.169	47.619	2.26	1.43	45.95	4.93
996	10688	0.930310	CGCGTGAGGACACCATATTG	59.070	55.000	0.00	0.00	43.34	1.90
998	10690	0.102481	GACGCGTGAGGACACCATAT	59.898	55.000	20.70	0.00	43.34	1.78
999	10691	1.509463	GACGCGTGAGGACACCATA	59.491	57.895	20.70	0.00	43.34	2.74
1031	10723	2.426406	ATGCACAGGAGGATCGCGA	61.426	57.895	13.09	13.09	34.37	5.87
1045	10737	1.001764	CCTGGACAGAAGCCATGCA	60.002	57.895	0.00	0.00	34.33	3.96
1143	10948	3.452474	GAGCTTGACTATGTCGCTCAAT	58.548	45.455	16.76	0.00	41.87	2.57
1208	11019	2.358737	GACAGCACCGGTCCTTGG	60.359	66.667	2.59	0.00	0.00	3.61
1256	11067	1.068287	GAACGCGACTCTCAGACAGC	61.068	60.000	15.93	0.00	0.00	4.40
1277	11088	2.567564	GAAACGAAGATCGGCCCGGA	62.568	60.000	0.73	0.00	45.59	5.14
1284	11230	1.011968	TGGCGTGGAAACGAAGATCG	61.012	55.000	1.87	0.00	46.93	3.69
1364	11522	2.088950	TAAGGGTACAAGACAAGCGC	57.911	50.000	0.00	0.00	0.00	5.92
1380	11538	3.522553	GAGGTGACGTCTCCCAAATAAG	58.477	50.000	28.33	0.00	0.00	1.73
1381	11539	2.094390	CGAGGTGACGTCTCCCAAATAA	60.094	50.000	28.33	0.00	0.00	1.40
1382	11540	1.475280	CGAGGTGACGTCTCCCAAATA	59.525	52.381	28.33	0.00	0.00	1.40
1384	11542	1.663739	CGAGGTGACGTCTCCCAAA	59.336	57.895	28.33	0.00	0.00	3.28
1389	11547	3.053849	GAGGCCGAGGTGACGTCTC	62.054	68.421	17.92	13.38	0.00	3.36
1504	11694	6.542005	TCGAAACCGGTACATACTAGTATGAA	59.458	38.462	37.75	7.70	44.22	2.57
1564	11791	2.046507	ACCAGTAGCAGCAGCAGC	60.047	61.111	3.17	0.46	45.49	5.25
1565	11792	1.744368	CCACCAGTAGCAGCAGCAG	60.744	63.158	3.17	0.00	45.49	4.24
1566	11793	2.348620	CCACCAGTAGCAGCAGCA	59.651	61.111	3.17	0.00	45.49	4.41
1603	11838	7.170489	CACATCACTTACAATAGCAGGTAGATG	59.830	40.741	0.00	0.00	35.41	2.90
1635	11870	5.622233	GCAATTCACTCATACAAAAGGGGAC	60.622	44.000	0.00	0.00	0.00	4.46
1688	11923	9.822185	GGTAGCAAATCCAGAATTGAATTTAAT	57.178	29.630	0.00	0.00	0.00	1.40
1689	11924	8.811017	TGGTAGCAAATCCAGAATTGAATTTAA	58.189	29.630	0.00	0.00	0.00	1.52
1713	11948	2.364632	TGGTGCGTCCAAGAAATATGG	58.635	47.619	0.00	0.00	44.12	2.74
1726	11961	4.911514	AAACAGTAGATTTTTGGTGCGT	57.088	36.364	0.00	0.00	0.00	5.24
1730	11965	7.295340	AGGAAGGTAAACAGTAGATTTTTGGT	58.705	34.615	0.00	0.00	0.00	3.67
1764	11999	7.106890	TCCAAATCGGTCATAAGTGTTTATCA	58.893	34.615	0.00	0.00	35.57	2.15
1769	12004	5.181245	CAGTTCCAAATCGGTCATAAGTGTT	59.819	40.000	0.00	0.00	35.57	3.32
1801	12118	3.243168	CGGGCCTGACACATCATAAATTG	60.243	47.826	5.28	0.00	33.22	2.32
1807	12124	2.124570	GCGGGCCTGACACATCAT	60.125	61.111	18.31	0.00	33.22	2.45
1811	12128	2.449031	CTTACAGCGGGCCTGACACA	62.449	60.000	18.31	0.00	44.64	3.72
1812	12129	1.741770	CTTACAGCGGGCCTGACAC	60.742	63.158	18.31	0.00	44.64	3.67
1859	12176	2.161609	CCAAACTAACGGTCAAGCATCC	59.838	50.000	0.00	0.00	0.00	3.51
1861	12178	2.812011	GTCCAAACTAACGGTCAAGCAT	59.188	45.455	0.00	0.00	0.00	3.79
1863	12180	1.193874	CGTCCAAACTAACGGTCAAGC	59.806	52.381	0.00	0.00	35.32	4.01
1911	12228	5.380900	AGAAAGGGAGAAGAAGGTTTCAAG	58.619	41.667	0.00	0.00	0.00	3.02
1935	12252	4.155826	CCTATTCGAAGAAATGCCACACAA	59.844	41.667	3.35	0.00	45.90	3.33
1981	12298	4.238654	TTCCCGCCGTTGTTCCGT	62.239	61.111	0.00	0.00	0.00	4.69
2004	12321	2.683859	CGACACACGCTACCGAGGA	61.684	63.158	0.00	0.00	38.29	3.71
2072	12389	2.123726	GGGCGGCAGGGATTCAAT	60.124	61.111	12.47	0.00	0.00	2.57
2140	12488	1.933021	ACAAGGAGATGTGTCGGGTA	58.067	50.000	0.00	0.00	30.82	3.69
2234	12582	2.111999	CTTGAGGAGGAACCGCCACA	62.112	60.000	15.35	12.24	44.74	4.17
2235	12583	1.376037	CTTGAGGAGGAACCGCCAC	60.376	63.158	15.35	9.84	44.74	5.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.