Multiple sequence alignment - TraesCS1D01G361600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G361600 chr1D 100.000 3937 0 0 1 3937 444344732 444340796 0.000000e+00 7271.0
1 TraesCS1D01G361600 chr1D 94.595 74 4 0 1054 1127 99471170 99471097 8.940000e-22 115.0
2 TraesCS1D01G361600 chr1A 86.470 1929 158 54 1926 3802 539972276 539970399 0.000000e+00 2021.0
3 TraesCS1D01G361600 chr1A 88.212 772 40 11 1 758 539974581 539973847 0.000000e+00 874.0
4 TraesCS1D01G361600 chr1A 92.437 119 9 0 3819 3937 539970283 539970165 1.880000e-38 171.0
5 TraesCS1D01G361600 chr1A 100.000 43 0 0 297 339 12218778 12218820 3.260000e-11 80.5
6 TraesCS1D01G361600 chr1B 86.729 1183 95 40 1 1149 604322339 604321185 0.000000e+00 1258.0
7 TraesCS1D01G361600 chr1B 86.767 1058 105 18 1915 2949 604320238 604319193 0.000000e+00 1146.0
8 TraesCS1D01G361600 chr1B 89.140 709 50 12 3242 3935 604318804 604318108 0.000000e+00 857.0
9 TraesCS1D01G361600 chr1B 91.016 256 17 4 2910 3159 604319201 604318946 1.350000e-89 340.0
10 TraesCS1D01G361600 chrUn 78.406 389 59 19 1099 1477 324003087 324003460 3.060000e-56 230.0
11 TraesCS1D01G361600 chrUn 82.741 197 29 4 297 491 87835060 87835253 1.880000e-38 171.0
12 TraesCS1D01G361600 chr2B 78.406 389 59 19 1099 1477 238709830 238709457 3.060000e-56 230.0
13 TraesCS1D01G361600 chr2B 78.406 389 59 19 1099 1477 238765192 238764819 3.060000e-56 230.0
14 TraesCS1D01G361600 chr2B 78.406 389 59 19 1099 1477 238821170 238820797 3.060000e-56 230.0
15 TraesCS1D01G361600 chr3D 86.131 137 4 3 993 1129 550515496 550515617 2.470000e-27 134.0
16 TraesCS1D01G361600 chr3D 83.942 137 7 3 993 1129 274336215 274336094 2.490000e-22 117.0
17 TraesCS1D01G361600 chr5D 97.368 76 1 1 1054 1129 553219772 553219698 1.150000e-25 128.0
18 TraesCS1D01G361600 chr5D 97.368 76 1 1 1054 1129 553254098 553254024 1.150000e-25 128.0
19 TraesCS1D01G361600 chr5B 81.529 157 14 5 983 1139 53259314 53259455 8.940000e-22 115.0
20 TraesCS1D01G361600 chr5B 93.443 61 3 1 1065 1125 385243510 385243569 5.420000e-14 89.8
21 TraesCS1D01G361600 chr2A 77.114 201 25 15 297 483 18003750 18003943 3.240000e-16 97.1
22 TraesCS1D01G361600 chr6A 93.443 61 3 1 1065 1125 14540284 14540225 5.420000e-14 89.8
23 TraesCS1D01G361600 chr3A 97.959 49 1 0 294 342 713994965 713995013 7.010000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G361600 chr1D 444340796 444344732 3936 True 7271.00 7271 100.000000 1 3937 1 chr1D.!!$R2 3936
1 TraesCS1D01G361600 chr1A 539970165 539974581 4416 True 1022.00 2021 89.039667 1 3937 3 chr1A.!!$R1 3936
2 TraesCS1D01G361600 chr1B 604318108 604322339 4231 True 900.25 1258 88.413000 1 3935 4 chr1B.!!$R1 3934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 649 0.030603 GGAGGAGGGACAGAAGGGAT 60.031 60.0 0.0 0.0 0.0 3.85 F
1562 1884 0.034574 ATCGGTAACCAGCAATGCCA 60.035 50.0 0.0 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1903 0.034337 GTACTGGAACTGTCGGCCAA 59.966 55.0 2.24 0.0 41.74 4.52 R
3110 3762 0.106868 CTGATGCATCCCCTCAAGCA 60.107 55.0 23.67 1.5 41.73 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 3.116531 GGTCGCACGCCAGGTAAC 61.117 66.667 0.00 0.00 0.00 2.50
401 408 4.816984 GGGCTCGTCCTCCTCGGA 62.817 72.222 0.00 0.00 40.30 4.55
432 439 2.269241 GGGAAGGGCTTGTCGAGG 59.731 66.667 0.00 0.00 0.00 4.63
507 517 3.459063 GCGGGTAAGGAGCGGAGT 61.459 66.667 0.00 0.00 0.00 3.85
512 522 3.458163 TAAGGAGCGGAGTGGCGG 61.458 66.667 0.00 0.00 38.18 6.13
589 599 4.864334 GGGATCCGTGCCTGGCTG 62.864 72.222 21.03 12.17 32.15 4.85
633 643 4.779733 GCGGGGAGGAGGGACAGA 62.780 72.222 0.00 0.00 0.00 3.41
636 646 1.690985 GGGGAGGAGGGACAGAAGG 60.691 68.421 0.00 0.00 0.00 3.46
639 649 0.030603 GGAGGAGGGACAGAAGGGAT 60.031 60.000 0.00 0.00 0.00 3.85
641 651 0.985490 AGGAGGGACAGAAGGGATGC 60.985 60.000 0.00 0.00 0.00 3.91
720 744 1.256812 GCTCCAGCTCTATCTCCTCC 58.743 60.000 0.00 0.00 38.21 4.30
759 785 2.604046 ATTTTCTCATCCGTCCTCCG 57.396 50.000 0.00 0.00 0.00 4.63
761 787 1.263356 TTTCTCATCCGTCCTCCGTT 58.737 50.000 0.00 0.00 33.66 4.44
762 788 1.263356 TTCTCATCCGTCCTCCGTTT 58.737 50.000 0.00 0.00 33.66 3.60
763 789 0.530744 TCTCATCCGTCCTCCGTTTG 59.469 55.000 0.00 0.00 33.66 2.93
764 790 0.460284 CTCATCCGTCCTCCGTTTGG 60.460 60.000 0.00 0.00 33.66 3.28
780 816 2.107950 TTGGGCTATTCTGGTGAACG 57.892 50.000 0.00 0.00 34.71 3.95
782 818 1.207089 TGGGCTATTCTGGTGAACGAG 59.793 52.381 0.00 0.00 34.71 4.18
787 823 0.966920 ATTCTGGTGAACGAGTCGGT 59.033 50.000 18.30 11.09 34.71 4.69
802 838 4.735358 GGTCCGGCCCAGGTTTCC 62.735 72.222 0.00 0.00 0.00 3.13
804 840 2.938798 TCCGGCCCAGGTTTCCAT 60.939 61.111 0.00 0.00 0.00 3.41
805 841 2.037208 CCGGCCCAGGTTTCCATT 59.963 61.111 0.00 0.00 0.00 3.16
807 843 1.000896 CGGCCCAGGTTTCCATTCT 60.001 57.895 0.00 0.00 0.00 2.40
809 845 1.644509 GGCCCAGGTTTCCATTCTTT 58.355 50.000 0.00 0.00 0.00 2.52
810 846 1.550524 GGCCCAGGTTTCCATTCTTTC 59.449 52.381 0.00 0.00 0.00 2.62
811 847 2.529632 GCCCAGGTTTCCATTCTTTCT 58.470 47.619 0.00 0.00 0.00 2.52
813 849 3.815757 GCCCAGGTTTCCATTCTTTCTCT 60.816 47.826 0.00 0.00 0.00 3.10
814 850 4.411013 CCCAGGTTTCCATTCTTTCTCTT 58.589 43.478 0.00 0.00 0.00 2.85
815 851 4.460731 CCCAGGTTTCCATTCTTTCTCTTC 59.539 45.833 0.00 0.00 0.00 2.87
816 852 4.154918 CCAGGTTTCCATTCTTTCTCTTCG 59.845 45.833 0.00 0.00 0.00 3.79
818 854 3.424962 GGTTTCCATTCTTTCTCTTCGCG 60.425 47.826 0.00 0.00 0.00 5.87
819 855 2.010145 TCCATTCTTTCTCTTCGCGG 57.990 50.000 6.13 0.00 0.00 6.46
820 856 0.375106 CCATTCTTTCTCTTCGCGGC 59.625 55.000 6.13 0.00 0.00 6.53
821 857 1.363744 CATTCTTTCTCTTCGCGGCT 58.636 50.000 6.13 0.00 0.00 5.52
822 858 2.540515 CATTCTTTCTCTTCGCGGCTA 58.459 47.619 6.13 0.00 0.00 3.93
837 877 1.228510 GCTAGCCTGGCCCAGAAAT 59.771 57.895 13.74 0.00 32.44 2.17
845 885 2.115291 GGCCCAGAAATGTCGAGCC 61.115 63.158 0.00 0.00 33.04 4.70
847 887 1.299648 CCCAGAAATGTCGAGCCCA 59.700 57.895 0.00 0.00 0.00 5.36
853 893 1.734465 GAAATGTCGAGCCCAACTGAG 59.266 52.381 0.00 0.00 0.00 3.35
862 902 1.450312 CCCAACTGAGATGCGGGAC 60.450 63.158 0.00 0.00 39.44 4.46
863 903 1.450312 CCAACTGAGATGCGGGACC 60.450 63.158 0.00 0.00 0.00 4.46
864 904 1.450312 CAACTGAGATGCGGGACCC 60.450 63.158 0.00 0.00 0.00 4.46
906 956 4.514577 CTGACGCGAGCCCCGAAT 62.515 66.667 15.93 0.00 41.76 3.34
907 957 4.508128 TGACGCGAGCCCCGAATC 62.508 66.667 15.93 0.00 41.76 2.52
913 963 3.834799 GAGCCCCGAATCGTCCGT 61.835 66.667 0.82 0.00 0.00 4.69
915 965 4.886121 GCCCCGAATCGTCCGTCC 62.886 72.222 0.82 0.00 0.00 4.79
954 1004 3.771160 GAGCGGCGGAAGGAAGGA 61.771 66.667 9.78 0.00 0.00 3.36
955 1005 3.310860 GAGCGGCGGAAGGAAGGAA 62.311 63.158 9.78 0.00 0.00 3.36
956 1006 2.820037 GCGGCGGAAGGAAGGAAG 60.820 66.667 9.78 0.00 0.00 3.46
957 1007 2.125106 CGGCGGAAGGAAGGAAGG 60.125 66.667 0.00 0.00 0.00 3.46
961 1011 1.848886 GCGGAAGGAAGGAAGGGGAA 61.849 60.000 0.00 0.00 0.00 3.97
1151 1201 3.773154 GCCCTCCTCCTCCCCTCT 61.773 72.222 0.00 0.00 0.00 3.69
1152 1202 2.285180 CCCTCCTCCTCCCCTCTG 59.715 72.222 0.00 0.00 0.00 3.35
1157 1207 2.695597 CTCCTCCCCTCTGCCTCT 59.304 66.667 0.00 0.00 0.00 3.69
1158 1208 1.761667 CTCCTCCCCTCTGCCTCTG 60.762 68.421 0.00 0.00 0.00 3.35
1161 1211 4.704103 TCCCCTCTGCCTCTGCGT 62.704 66.667 0.00 0.00 41.78 5.24
1176 1226 0.393132 TGCGTCTCAGATCTCGGACT 60.393 55.000 17.31 0.00 0.00 3.85
1180 1230 2.639065 GTCTCAGATCTCGGACTCTGT 58.361 52.381 14.10 0.00 39.87 3.41
1181 1231 2.354510 GTCTCAGATCTCGGACTCTGTG 59.645 54.545 14.10 9.31 39.87 3.66
1184 1234 0.323816 AGATCTCGGACTCTGTGCCA 60.324 55.000 0.00 0.00 0.00 4.92
1186 1236 0.613292 ATCTCGGACTCTGTGCCACT 60.613 55.000 0.00 0.00 0.00 4.00
1187 1237 0.037734 TCTCGGACTCTGTGCCACTA 59.962 55.000 0.00 0.00 0.00 2.74
1189 1239 0.251209 TCGGACTCTGTGCCACTACT 60.251 55.000 0.00 0.00 0.00 2.57
1190 1240 0.171455 CGGACTCTGTGCCACTACTC 59.829 60.000 0.00 0.00 0.00 2.59
1191 1241 0.533032 GGACTCTGTGCCACTACTCC 59.467 60.000 0.00 0.00 0.00 3.85
1192 1242 0.171455 GACTCTGTGCCACTACTCCG 59.829 60.000 0.00 0.00 0.00 4.63
1193 1243 0.539901 ACTCTGTGCCACTACTCCGT 60.540 55.000 0.00 0.00 0.00 4.69
1194 1244 0.109086 CTCTGTGCCACTACTCCGTG 60.109 60.000 0.00 0.00 34.71 4.94
1201 1251 2.896278 CACTACTCCGTGGATCCCA 58.104 57.895 9.90 0.00 0.00 4.37
1202 1252 1.191535 CACTACTCCGTGGATCCCAA 58.808 55.000 9.90 0.00 34.18 4.12
1203 1253 1.134788 CACTACTCCGTGGATCCCAAC 60.135 57.143 9.90 0.00 34.18 3.77
1206 1256 4.090588 TCCGTGGATCCCAACCGC 62.091 66.667 9.90 0.00 34.18 5.68
1212 1262 4.778143 GATCCCAACCGCGCCTGT 62.778 66.667 0.00 0.00 0.00 4.00
1213 1263 4.778143 ATCCCAACCGCGCCTGTC 62.778 66.667 0.00 0.00 0.00 3.51
1215 1265 4.077184 CCCAACCGCGCCTGTCTA 62.077 66.667 0.00 0.00 0.00 2.59
1216 1266 2.509336 CCAACCGCGCCTGTCTAG 60.509 66.667 0.00 0.00 0.00 2.43
1230 1292 4.414337 CTGTCTAGGAAGAAGAATGGGG 57.586 50.000 0.00 0.00 32.16 4.96
1233 1295 4.656112 TGTCTAGGAAGAAGAATGGGGATC 59.344 45.833 0.00 0.00 32.16 3.36
1234 1296 4.656112 GTCTAGGAAGAAGAATGGGGATCA 59.344 45.833 0.00 0.00 32.16 2.92
1237 1299 2.158549 GGAAGAAGAATGGGGATCAGGG 60.159 54.545 0.00 0.00 0.00 4.45
1240 1302 3.201363 AGAAGAATGGGGATCAGGGAAA 58.799 45.455 0.00 0.00 0.00 3.13
1253 1315 3.097293 GGAAACCCCCTTCCTCCC 58.903 66.667 0.00 0.00 41.56 4.30
1254 1316 2.623450 GGAAACCCCCTTCCTCCCC 61.623 68.421 0.00 0.00 41.56 4.81
1256 1318 3.510432 AAACCCCCTTCCTCCCCGA 62.510 63.158 0.00 0.00 0.00 5.14
1258 1320 4.089757 CCCCCTTCCTCCCCGAGA 62.090 72.222 0.00 0.00 0.00 4.04
1269 1421 4.675029 CCCGAGACGGCGTTTGGT 62.675 66.667 16.19 0.00 46.86 3.67
1270 1422 2.663852 CCGAGACGGCGTTTGGTT 60.664 61.111 16.19 0.00 41.17 3.67
1271 1423 2.664436 CCGAGACGGCGTTTGGTTC 61.664 63.158 16.19 6.68 41.17 3.62
1272 1424 1.663702 CGAGACGGCGTTTGGTTCT 60.664 57.895 16.19 4.93 0.00 3.01
1273 1425 0.387622 CGAGACGGCGTTTGGTTCTA 60.388 55.000 16.19 0.00 0.00 2.10
1274 1426 1.787012 GAGACGGCGTTTGGTTCTAA 58.213 50.000 16.19 0.00 0.00 2.10
1275 1427 2.137523 GAGACGGCGTTTGGTTCTAAA 58.862 47.619 16.19 0.00 0.00 1.85
1276 1428 1.869132 AGACGGCGTTTGGTTCTAAAC 59.131 47.619 16.19 0.00 37.23 2.01
1297 1449 7.672983 AAACCCTATATATGAATCGCACTTG 57.327 36.000 0.00 0.00 0.00 3.16
1333 1538 5.474532 TCATGTTCCTATTAGCATCATTGGC 59.525 40.000 0.00 0.00 0.00 4.52
1335 1540 3.057969 TCCTATTAGCATCATTGGCCG 57.942 47.619 0.00 0.00 0.00 6.13
1345 1550 2.679996 ATTGGCCGGCCCTGAAAC 60.680 61.111 41.75 16.63 34.56 2.78
1347 1552 4.659172 TGGCCGGCCCTGAAACTG 62.659 66.667 41.75 0.00 34.56 3.16
1349 1554 2.597510 GCCGGCCCTGAAACTGTT 60.598 61.111 18.11 0.00 0.00 3.16
1350 1555 2.200337 GCCGGCCCTGAAACTGTTT 61.200 57.895 18.11 5.29 0.00 2.83
1358 1563 1.536709 CCTGAAACTGTTTGCCAGCAC 60.537 52.381 11.03 0.00 45.68 4.40
1360 1565 0.249447 GAAACTGTTTGCCAGCACCC 60.249 55.000 11.03 0.00 45.68 4.61
1361 1566 0.687427 AAACTGTTTGCCAGCACCCT 60.687 50.000 4.73 0.00 45.68 4.34
1369 1574 1.377333 GCCAGCACCCTACTTGGAC 60.377 63.158 0.00 0.00 38.35 4.02
1371 1576 0.321653 CCAGCACCCTACTTGGACAC 60.322 60.000 0.00 0.00 38.35 3.67
1372 1577 0.396435 CAGCACCCTACTTGGACACA 59.604 55.000 0.00 0.00 38.35 3.72
1383 1588 0.758734 TTGGACACACACCAGGAGAG 59.241 55.000 0.00 0.00 38.70 3.20
1385 1590 1.004440 GACACACACCAGGAGAGCC 60.004 63.158 0.00 0.00 0.00 4.70
1410 1615 4.408276 TCCAGTGATAGGTACTGATAGCC 58.592 47.826 6.70 0.00 46.52 3.93
1415 1620 8.216886 CAGTGATAGGTACTGATAGCCGTCAG 62.217 50.000 12.90 12.90 46.52 3.51
1431 1636 3.189287 CCGTCAGGCCTGAATTATTATGC 59.811 47.826 36.66 19.29 41.85 3.14
1432 1637 3.189287 CGTCAGGCCTGAATTATTATGCC 59.811 47.826 36.66 18.56 41.85 4.40
1433 1638 3.507622 GTCAGGCCTGAATTATTATGCCC 59.492 47.826 36.66 15.90 41.85 5.36
1434 1639 2.827921 CAGGCCTGAATTATTATGCCCC 59.172 50.000 29.88 0.00 39.72 5.80
1436 1641 2.827921 GGCCTGAATTATTATGCCCCAG 59.172 50.000 0.00 0.00 32.74 4.45
1437 1642 3.500343 GCCTGAATTATTATGCCCCAGT 58.500 45.455 0.00 0.00 0.00 4.00
1438 1643 4.508405 GGCCTGAATTATTATGCCCCAGTA 60.508 45.833 0.00 0.00 32.74 2.74
1440 1645 5.538433 GCCTGAATTATTATGCCCCAGTAAA 59.462 40.000 0.00 0.00 0.00 2.01
1441 1646 6.294731 GCCTGAATTATTATGCCCCAGTAAAG 60.295 42.308 0.00 0.00 0.00 1.85
1444 1649 9.520515 CTGAATTATTATGCCCCAGTAAAGTAT 57.479 33.333 0.00 0.00 0.00 2.12
1445 1650 9.875708 TGAATTATTATGCCCCAGTAAAGTATT 57.124 29.630 0.00 0.00 0.00 1.89
1458 1727 8.686334 CCCAGTAAAGTATTGTTTGCTGATTAT 58.314 33.333 13.82 0.00 47.00 1.28
1465 1734 4.550076 TTGTTTGCTGATTATTTGGGGG 57.450 40.909 0.00 0.00 0.00 5.40
1479 1748 4.974721 GGGGTGCCTGTGGTGGTG 62.975 72.222 0.00 0.00 0.00 4.17
1480 1749 3.884774 GGGTGCCTGTGGTGGTGA 61.885 66.667 0.00 0.00 0.00 4.02
1481 1750 2.436109 GGTGCCTGTGGTGGTGAT 59.564 61.111 0.00 0.00 0.00 3.06
1482 1751 1.973281 GGTGCCTGTGGTGGTGATG 60.973 63.158 0.00 0.00 0.00 3.07
1483 1752 2.282391 TGCCTGTGGTGGTGATGC 60.282 61.111 0.00 0.00 0.00 3.91
1484 1753 2.282391 GCCTGTGGTGGTGATGCA 60.282 61.111 0.00 0.00 0.00 3.96
1485 1754 1.679977 GCCTGTGGTGGTGATGCAT 60.680 57.895 0.00 0.00 0.00 3.96
1486 1755 1.940883 GCCTGTGGTGGTGATGCATG 61.941 60.000 2.46 0.00 0.00 4.06
1487 1756 0.609957 CCTGTGGTGGTGATGCATGT 60.610 55.000 2.46 0.00 0.00 3.21
1488 1757 1.250328 CTGTGGTGGTGATGCATGTT 58.750 50.000 2.46 0.00 0.00 2.71
1489 1758 2.435422 CTGTGGTGGTGATGCATGTTA 58.565 47.619 2.46 0.00 0.00 2.41
1490 1759 2.819019 CTGTGGTGGTGATGCATGTTAA 59.181 45.455 2.46 0.00 0.00 2.01
1491 1760 3.429492 TGTGGTGGTGATGCATGTTAAT 58.571 40.909 2.46 0.00 0.00 1.40
1492 1761 3.193056 TGTGGTGGTGATGCATGTTAATG 59.807 43.478 2.46 0.00 36.82 1.90
1506 1775 6.949352 CATGTTAATGCTTCTATGGACCTT 57.051 37.500 0.00 0.00 0.00 3.50
1508 1777 8.627208 CATGTTAATGCTTCTATGGACCTTAT 57.373 34.615 0.00 0.00 0.00 1.73
1509 1778 8.725148 CATGTTAATGCTTCTATGGACCTTATC 58.275 37.037 0.00 0.00 0.00 1.75
1510 1779 7.801104 TGTTAATGCTTCTATGGACCTTATCA 58.199 34.615 0.00 0.00 0.00 2.15
1511 1780 7.933577 TGTTAATGCTTCTATGGACCTTATCAG 59.066 37.037 0.00 0.00 0.00 2.90
1513 1782 3.071602 TGCTTCTATGGACCTTATCAGGC 59.928 47.826 0.00 0.00 45.56 4.85
1514 1783 3.558109 GCTTCTATGGACCTTATCAGGCC 60.558 52.174 0.00 0.00 45.56 5.19
1515 1784 3.344535 TCTATGGACCTTATCAGGCCA 57.655 47.619 5.01 10.36 45.56 5.36
1516 1785 2.972713 TCTATGGACCTTATCAGGCCAC 59.027 50.000 5.01 0.00 44.46 5.01
1517 1786 1.898863 ATGGACCTTATCAGGCCACT 58.101 50.000 5.01 0.00 44.46 4.00
1520 1789 2.292918 TGGACCTTATCAGGCCACTACT 60.293 50.000 5.01 0.00 45.56 2.57
1524 1793 5.104652 GGACCTTATCAGGCCACTACTTTTA 60.105 44.000 5.01 0.00 45.56 1.52
1530 1802 4.394729 TCAGGCCACTACTTTTAGTTTGG 58.605 43.478 5.01 0.00 36.31 3.28
1536 1808 6.293790 GGCCACTACTTTTAGTTTGGTTACAG 60.294 42.308 0.00 0.00 36.31 2.74
1538 1810 6.293790 CCACTACTTTTAGTTTGGTTACAGCC 60.294 42.308 0.00 0.00 36.31 4.85
1542 1814 6.358991 ACTTTTAGTTTGGTTACAGCCTGTA 58.641 36.000 0.00 0.00 0.00 2.74
1555 1877 1.134491 AGCCTGTAATCGGTAACCAGC 60.134 52.381 0.00 0.00 0.00 4.85
1562 1884 0.034574 ATCGGTAACCAGCAATGCCA 60.035 50.000 0.00 0.00 0.00 4.92
1569 1891 3.706600 AACCAGCAATGCCATTTTGAT 57.293 38.095 0.00 0.00 0.00 2.57
1573 1896 4.456566 ACCAGCAATGCCATTTTGATTTTC 59.543 37.500 0.00 0.00 0.00 2.29
1579 1902 4.270245 TGCCATTTTGATTTTCACCTCC 57.730 40.909 0.00 0.00 0.00 4.30
1580 1903 3.903090 TGCCATTTTGATTTTCACCTCCT 59.097 39.130 0.00 0.00 0.00 3.69
1585 1908 1.923356 TGATTTTCACCTCCTTGGCC 58.077 50.000 0.00 0.00 40.22 5.36
1606 1929 2.609737 CGACAGTTCCAGTACCACTTCC 60.610 54.545 0.00 0.00 0.00 3.46
1609 1932 1.348036 AGTTCCAGTACCACTTCCTGC 59.652 52.381 0.00 0.00 0.00 4.85
1618 1941 2.453521 ACCACTTCCTGCGATGTAGTA 58.546 47.619 0.00 0.00 0.00 1.82
1620 1943 4.212716 ACCACTTCCTGCGATGTAGTATA 58.787 43.478 0.00 0.00 0.00 1.47
1621 1944 4.278669 ACCACTTCCTGCGATGTAGTATAG 59.721 45.833 0.00 0.00 0.00 1.31
1622 1945 4.278669 CCACTTCCTGCGATGTAGTATAGT 59.721 45.833 0.00 0.00 0.00 2.12
1623 1946 5.221263 CCACTTCCTGCGATGTAGTATAGTT 60.221 44.000 0.00 0.00 0.00 2.24
1624 1947 6.016527 CCACTTCCTGCGATGTAGTATAGTTA 60.017 42.308 0.00 0.00 0.00 2.24
1634 1957 7.273815 GCGATGTAGTATAGTTATCTTGGCTTC 59.726 40.741 0.00 0.00 0.00 3.86
1635 1958 8.516234 CGATGTAGTATAGTTATCTTGGCTTCT 58.484 37.037 0.00 0.00 0.00 2.85
1638 1961 8.851145 TGTAGTATAGTTATCTTGGCTTCTCAG 58.149 37.037 0.00 0.00 0.00 3.35
1640 1963 6.841755 AGTATAGTTATCTTGGCTTCTCAGGT 59.158 38.462 0.00 0.00 0.00 4.00
1643 1966 6.567602 AGTTATCTTGGCTTCTCAGGTTAT 57.432 37.500 0.00 0.00 0.00 1.89
1646 1969 4.640771 TCTTGGCTTCTCAGGTTATTGT 57.359 40.909 0.00 0.00 0.00 2.71
1650 1973 5.755409 TGGCTTCTCAGGTTATTGTTCTA 57.245 39.130 0.00 0.00 0.00 2.10
1653 1976 6.599244 TGGCTTCTCAGGTTATTGTTCTATTG 59.401 38.462 0.00 0.00 0.00 1.90
1656 1979 6.636454 TCTCAGGTTATTGTTCTATTGGGT 57.364 37.500 0.00 0.00 0.00 4.51
1667 1990 5.974108 TGTTCTATTGGGTAGTTCAGTAGC 58.026 41.667 0.00 0.00 0.00 3.58
1670 1993 7.398047 TGTTCTATTGGGTAGTTCAGTAGCTTA 59.602 37.037 0.00 0.00 0.00 3.09
1672 1995 9.650714 TTCTATTGGGTAGTTCAGTAGCTTATA 57.349 33.333 0.00 0.00 0.00 0.98
1673 1996 9.075678 TCTATTGGGTAGTTCAGTAGCTTATAC 57.924 37.037 0.00 0.00 0.00 1.47
1684 2018 6.776744 TCAGTAGCTTATACGATCTTAGGGA 58.223 40.000 0.00 0.00 0.00 4.20
1686 2020 7.337184 TCAGTAGCTTATACGATCTTAGGGATG 59.663 40.741 0.00 0.00 34.33 3.51
1690 2024 7.122715 AGCTTATACGATCTTAGGGATGATCT 58.877 38.462 0.00 0.00 37.51 2.75
1692 2026 7.067615 GCTTATACGATCTTAGGGATGATCTGA 59.932 40.741 0.00 0.00 37.51 3.27
1693 2027 8.512966 TTATACGATCTTAGGGATGATCTGAG 57.487 38.462 0.00 0.00 37.51 3.35
1695 2029 3.119173 CGATCTTAGGGATGATCTGAGGC 60.119 52.174 0.00 0.00 37.51 4.70
1696 2030 3.334910 TCTTAGGGATGATCTGAGGCA 57.665 47.619 0.00 0.00 0.00 4.75
1699 2033 5.022122 TCTTAGGGATGATCTGAGGCATAG 58.978 45.833 0.00 0.00 0.00 2.23
1700 2034 3.272716 AGGGATGATCTGAGGCATAGT 57.727 47.619 0.00 0.00 0.00 2.12
1701 2035 2.905085 AGGGATGATCTGAGGCATAGTG 59.095 50.000 0.00 0.00 0.00 2.74
1705 2222 4.444022 GGATGATCTGAGGCATAGTGTTGT 60.444 45.833 0.00 0.00 0.00 3.32
1710 2227 3.253188 TCTGAGGCATAGTGTTGTTTTGC 59.747 43.478 0.00 0.00 0.00 3.68
1714 2231 5.242615 TGAGGCATAGTGTTGTTTTGCATAA 59.757 36.000 0.00 0.00 35.04 1.90
1719 2236 7.253422 GCATAGTGTTGTTTTGCATAAGATCT 58.747 34.615 0.00 0.00 33.58 2.75
1725 2242 5.885230 TGTTTTGCATAAGATCTGAGGTG 57.115 39.130 0.00 0.00 0.00 4.00
1727 2244 2.627515 TGCATAAGATCTGAGGTGCC 57.372 50.000 15.13 0.00 0.00 5.01
1739 2256 3.277133 GGTGCCATGTTGCATCGT 58.723 55.556 0.00 0.00 44.30 3.73
1755 2272 4.095410 CATCGTTGCATGGTTGTTGTAT 57.905 40.909 0.00 0.00 0.00 2.29
1764 2281 6.108687 TGCATGGTTGTTGTATTTTGTTCAA 58.891 32.000 0.00 0.00 0.00 2.69
1766 2283 7.119699 TGCATGGTTGTTGTATTTTGTTCAAAA 59.880 29.630 12.11 12.11 0.00 2.44
1767 2284 7.965107 GCATGGTTGTTGTATTTTGTTCAAAAA 59.035 29.630 13.42 0.00 0.00 1.94
1786 2310 2.086610 AAGCAGTTGGTTTGTGGGAT 57.913 45.000 0.00 0.00 30.70 3.85
1792 2316 1.047002 TTGGTTTGTGGGATTGCCTG 58.953 50.000 0.00 0.00 0.00 4.85
1802 2326 2.090210 TGGGATTGCCTGGGATAGAGTA 60.090 50.000 0.00 0.00 0.00 2.59
1804 2328 3.008485 GGGATTGCCTGGGATAGAGTAAG 59.992 52.174 0.00 0.00 0.00 2.34
1811 2335 5.775701 TGCCTGGGATAGAGTAAGTATCTTC 59.224 44.000 0.00 0.00 0.00 2.87
1814 2338 7.007723 CCTGGGATAGAGTAAGTATCTTCTGT 58.992 42.308 0.00 0.00 0.00 3.41
1816 2340 8.466617 TGGGATAGAGTAAGTATCTTCTGTTC 57.533 38.462 0.00 0.00 0.00 3.18
1826 2350 9.997482 GTAAGTATCTTCTGTTCTAGTTCTGAG 57.003 37.037 0.00 0.00 0.00 3.35
1831 2355 5.244178 TCTTCTGTTCTAGTTCTGAGGTTCC 59.756 44.000 0.00 0.00 0.00 3.62
1833 2357 2.904434 TGTTCTAGTTCTGAGGTTCCCC 59.096 50.000 0.00 0.00 0.00 4.81
1840 2364 2.040412 GTTCTGAGGTTCCCCAGTGATT 59.960 50.000 0.00 0.00 0.00 2.57
1841 2365 1.630369 TCTGAGGTTCCCCAGTGATTG 59.370 52.381 0.00 0.00 0.00 2.67
1842 2366 1.352352 CTGAGGTTCCCCAGTGATTGT 59.648 52.381 0.00 0.00 0.00 2.71
1845 2369 2.820197 GAGGTTCCCCAGTGATTGTTTC 59.180 50.000 0.00 0.00 0.00 2.78
1847 2371 3.117131 AGGTTCCCCAGTGATTGTTTCTT 60.117 43.478 0.00 0.00 0.00 2.52
1848 2372 3.005791 GGTTCCCCAGTGATTGTTTCTTG 59.994 47.826 0.00 0.00 0.00 3.02
1851 2375 2.958355 CCCCAGTGATTGTTTCTTGTGT 59.042 45.455 0.00 0.00 0.00 3.72
1852 2376 3.004734 CCCCAGTGATTGTTTCTTGTGTC 59.995 47.826 0.00 0.00 0.00 3.67
1853 2377 3.631686 CCCAGTGATTGTTTCTTGTGTCA 59.368 43.478 0.00 0.00 0.00 3.58
1864 2388 6.437928 TGTTTCTTGTGTCATCTAAATGCAC 58.562 36.000 0.00 0.00 38.90 4.57
1865 2389 6.039159 TGTTTCTTGTGTCATCTAAATGCACA 59.961 34.615 0.00 9.83 42.64 4.57
1876 2400 8.454106 GTCATCTAAATGCACATGACTAGTTTT 58.546 33.333 0.00 0.00 41.27 2.43
1891 2415 5.193679 ACTAGTTTTCTGCAACTTGACCTT 58.806 37.500 4.99 0.00 38.07 3.50
1898 2422 3.152341 CTGCAACTTGACCTTCTGGATT 58.848 45.455 0.00 0.00 37.04 3.01
1905 2429 5.688807 ACTTGACCTTCTGGATTATGGATG 58.311 41.667 0.00 0.00 37.04 3.51
1910 2434 4.915809 ACCTTCTGGATTATGGATGGATGA 59.084 41.667 0.00 0.00 37.04 2.92
1917 2441 8.270030 TCTGGATTATGGATGGATGAATATGTC 58.730 37.037 0.00 0.00 0.00 3.06
1918 2442 8.166479 TGGATTATGGATGGATGAATATGTCT 57.834 34.615 0.00 0.00 0.00 3.41
1919 2443 8.050930 TGGATTATGGATGGATGAATATGTCTG 58.949 37.037 0.00 0.00 0.00 3.51
1920 2444 8.051535 GGATTATGGATGGATGAATATGTCTGT 58.948 37.037 0.00 0.00 0.00 3.41
1924 2448 4.867047 GGATGGATGAATATGTCTGTAGCG 59.133 45.833 0.00 0.00 0.00 4.26
1925 2449 3.653344 TGGATGAATATGTCTGTAGCGC 58.347 45.455 0.00 0.00 0.00 5.92
1926 2450 2.996621 GGATGAATATGTCTGTAGCGCC 59.003 50.000 2.29 0.00 0.00 6.53
1927 2451 3.306364 GGATGAATATGTCTGTAGCGCCT 60.306 47.826 2.29 0.00 0.00 5.52
1928 2452 3.819564 TGAATATGTCTGTAGCGCCTT 57.180 42.857 2.29 0.00 0.00 4.35
1946 2540 4.136796 GCCTTGCACATTACCAGATGATA 58.863 43.478 0.00 0.00 0.00 2.15
1948 2542 5.278169 GCCTTGCACATTACCAGATGATAAG 60.278 44.000 0.00 0.00 0.00 1.73
1950 2544 4.136796 TGCACATTACCAGATGATAAGGC 58.863 43.478 0.00 0.00 0.00 4.35
1952 2546 4.074970 CACATTACCAGATGATAAGGCCC 58.925 47.826 0.00 0.00 0.00 5.80
1965 2559 4.660303 TGATAAGGCCCTGACAATGTAGAT 59.340 41.667 0.00 0.00 0.00 1.98
1968 2562 1.678101 GGCCCTGACAATGTAGATTGC 59.322 52.381 12.27 6.34 42.54 3.56
1972 2566 4.012374 CCCTGACAATGTAGATTGCAAGT 58.988 43.478 12.27 0.00 42.54 3.16
1973 2567 4.095483 CCCTGACAATGTAGATTGCAAGTC 59.905 45.833 12.27 4.79 42.54 3.01
1977 2571 6.175471 TGACAATGTAGATTGCAAGTCATCT 58.825 36.000 12.27 5.36 42.54 2.90
2012 2606 3.493877 TGCATTTTGTGTTAACAGCATGC 59.506 39.130 22.57 22.57 45.31 4.06
2016 2610 3.300852 TTGTGTTAACAGCATGCCATG 57.699 42.857 15.66 9.95 42.53 3.66
2017 2611 1.545136 TGTGTTAACAGCATGCCATGG 59.455 47.619 15.66 7.63 42.53 3.66
2019 2614 1.818060 TGTTAACAGCATGCCATGGTC 59.182 47.619 15.66 6.41 42.53 4.02
2022 2617 2.440517 AACAGCATGCCATGGTCATA 57.559 45.000 15.66 0.00 42.53 2.15
2029 2624 3.489738 GCATGCCATGGTCATAGTTGAAC 60.490 47.826 14.67 0.00 40.20 3.18
2032 2627 5.172687 TGCCATGGTCATAGTTGAACTTA 57.827 39.130 14.67 0.00 40.45 2.24
2036 2631 6.151144 GCCATGGTCATAGTTGAACTTAACTT 59.849 38.462 14.67 0.00 40.45 2.66
2038 2633 8.883731 CCATGGTCATAGTTGAACTTAACTTAG 58.116 37.037 1.97 0.00 40.45 2.18
2048 2643 9.555727 AGTTGAACTTAACTTAGTTATCTGCAA 57.444 29.630 5.60 6.35 37.62 4.08
2057 2652 8.621532 AACTTAGTTATCTGCAAATGACTTGA 57.378 30.769 2.44 0.00 37.17 3.02
2058 2653 8.261492 ACTTAGTTATCTGCAAATGACTTGAG 57.739 34.615 2.44 4.96 37.17 3.02
2059 2654 5.557891 AGTTATCTGCAAATGACTTGAGC 57.442 39.130 0.00 0.00 37.17 4.26
2060 2655 5.005740 AGTTATCTGCAAATGACTTGAGCA 58.994 37.500 0.00 0.00 37.17 4.26
2062 2657 2.854963 TCTGCAAATGACTTGAGCACT 58.145 42.857 0.00 0.00 37.17 4.40
2063 2658 2.551032 TCTGCAAATGACTTGAGCACTG 59.449 45.455 0.00 0.00 37.17 3.66
2064 2659 1.610038 TGCAAATGACTTGAGCACTGG 59.390 47.619 0.00 0.00 37.17 4.00
2065 2660 1.668047 GCAAATGACTTGAGCACTGGC 60.668 52.381 0.00 0.00 37.17 4.85
2066 2661 1.610038 CAAATGACTTGAGCACTGGCA 59.390 47.619 0.00 0.00 44.61 4.92
2067 2662 2.211250 AATGACTTGAGCACTGGCAT 57.789 45.000 0.00 0.00 44.61 4.40
2068 2663 1.747709 ATGACTTGAGCACTGGCATC 58.252 50.000 0.00 0.00 44.61 3.91
2069 2664 0.321919 TGACTTGAGCACTGGCATCC 60.322 55.000 0.00 0.00 44.61 3.51
2070 2665 0.321919 GACTTGAGCACTGGCATCCA 60.322 55.000 0.00 0.00 44.61 3.41
2092 2687 4.426736 TTGATGCAGCATATCTCAGGAA 57.573 40.909 8.22 0.00 0.00 3.36
2094 2689 3.135167 TGATGCAGCATATCTCAGGAACA 59.865 43.478 8.22 0.00 0.00 3.18
2107 2702 7.771927 ATCTCAGGAACATTTCAGTTTCATT 57.228 32.000 0.00 0.00 29.01 2.57
2112 2707 4.687483 GGAACATTTCAGTTTCATTGGCAG 59.313 41.667 0.00 0.00 0.00 4.85
2141 2736 9.573166 CCAATCTTCCAAGTTCCAACATATATA 57.427 33.333 0.00 0.00 0.00 0.86
2146 2741 8.759481 TTCCAAGTTCCAACATATATATGCAA 57.241 30.769 20.46 7.53 37.19 4.08
2148 2743 8.849168 TCCAAGTTCCAACATATATATGCAAAG 58.151 33.333 20.46 8.89 37.19 2.77
2149 2744 8.084073 CCAAGTTCCAACATATATATGCAAAGG 58.916 37.037 20.46 16.29 37.19 3.11
2221 2828 7.780008 TTTGGACATTACCTGTATCATAACG 57.220 36.000 0.00 0.00 38.54 3.18
2222 2829 6.474140 TGGACATTACCTGTATCATAACGT 57.526 37.500 0.00 0.00 38.54 3.99
2232 2839 5.580691 CCTGTATCATAACGTTTGAAGCTGA 59.419 40.000 5.91 1.21 0.00 4.26
2234 2841 5.929415 TGTATCATAACGTTTGAAGCTGACA 59.071 36.000 5.91 8.22 0.00 3.58
2240 2847 2.032894 ACGTTTGAAGCTGACATGTTCG 60.033 45.455 0.00 0.00 0.00 3.95
2271 2878 5.009854 ACAAGAATGTTGGTGGTTTTGAG 57.990 39.130 0.00 0.00 35.91 3.02
2288 2895 6.371825 GGTTTTGAGTACCTTCCAGTATGAAG 59.628 42.308 0.00 0.00 41.15 3.02
2292 2899 5.046591 TGAGTACCTTCCAGTATGAAGTTGG 60.047 44.000 0.00 0.00 40.11 3.77
2360 2972 9.775854 ATGAAATATGAGAAGAACACTAGGATG 57.224 33.333 0.00 0.00 0.00 3.51
2481 3093 3.627395 TTTGTCCAGGTAGATGCGATT 57.373 42.857 0.00 0.00 0.00 3.34
2488 3100 4.404394 TCCAGGTAGATGCGATTAAGACAA 59.596 41.667 0.00 0.00 0.00 3.18
2538 3150 0.826062 CTTGAAATGTGGGGATGGGC 59.174 55.000 0.00 0.00 0.00 5.36
2549 3161 0.886490 GGGATGGGCGTCTTATGCTG 60.886 60.000 0.00 0.00 0.00 4.41
2564 3176 0.597568 TGCTGATTTTGAGCGGTTGG 59.402 50.000 0.00 0.00 39.47 3.77
2565 3177 0.598065 GCTGATTTTGAGCGGTTGGT 59.402 50.000 0.00 0.00 0.00 3.67
2585 3197 7.124750 GGTTGGTACTAACCTTAGTTGAGGATA 59.875 40.741 28.53 0.00 46.91 2.59
2587 3199 9.940974 TTGGTACTAACCTTAGTTGAGGATATA 57.059 33.333 3.08 0.00 46.91 0.86
2612 3224 5.662674 TCTTCCTCTGAGGTAAAGCTTAC 57.337 43.478 22.50 0.00 36.53 2.34
2766 3378 6.493189 TTTCCACTATACACCTGCATGATA 57.507 37.500 0.00 0.00 0.00 2.15
2780 3400 2.684881 GCATGATACTGGTTGGGTTGAG 59.315 50.000 0.00 0.00 0.00 3.02
2831 3451 1.067295 TCCAGGTGAAAGGTCTGCAT 58.933 50.000 0.00 0.00 0.00 3.96
2885 3505 2.564975 CGGCTTGCAGCTTTGGAG 59.435 61.111 7.85 0.00 41.99 3.86
2899 3519 2.034221 GGAGGCCCAGAAAAGCGT 59.966 61.111 0.00 0.00 0.00 5.07
3099 3751 2.023673 TGTTGTGTGGGCAAGAAGAAG 58.976 47.619 0.00 0.00 0.00 2.85
3102 3754 0.877743 GTGTGGGCAAGAAGAAGCTC 59.122 55.000 0.00 0.00 0.00 4.09
3103 3755 0.250901 TGTGGGCAAGAAGAAGCTCC 60.251 55.000 0.00 0.00 0.00 4.70
3108 3760 2.029560 GGGCAAGAAGAAGCTCCTTTTG 60.030 50.000 0.00 0.00 0.00 2.44
3110 3762 3.068732 GGCAAGAAGAAGCTCCTTTTGTT 59.931 43.478 8.54 0.00 0.00 2.83
3111 3763 4.047142 GCAAGAAGAAGCTCCTTTTGTTG 58.953 43.478 8.54 4.91 0.00 3.33
3112 3764 3.998099 AGAAGAAGCTCCTTTTGTTGC 57.002 42.857 0.00 0.00 0.00 4.17
3113 3765 3.560105 AGAAGAAGCTCCTTTTGTTGCT 58.440 40.909 0.00 0.00 37.37 3.91
3114 3766 3.956848 AGAAGAAGCTCCTTTTGTTGCTT 59.043 39.130 0.00 0.00 46.69 3.91
3115 3767 3.722728 AGAAGCTCCTTTTGTTGCTTG 57.277 42.857 3.74 0.00 44.47 4.01
3116 3768 3.290710 AGAAGCTCCTTTTGTTGCTTGA 58.709 40.909 3.74 0.00 44.47 3.02
3123 3782 2.028748 CCTTTTGTTGCTTGAGGGGATG 60.029 50.000 0.00 0.00 0.00 3.51
3131 3790 1.964552 CTTGAGGGGATGCATCAGAC 58.035 55.000 27.25 16.28 0.00 3.51
3147 3806 3.030291 TCAGACCTTTGCACACCATTTT 58.970 40.909 0.00 0.00 0.00 1.82
3194 3853 2.389962 TCAACCCGAACCCTTTATCG 57.610 50.000 0.00 0.00 38.74 2.92
3211 3870 1.153628 CGACGCCCCTCGATTTCTT 60.154 57.895 0.00 0.00 41.67 2.52
3212 3871 1.146358 CGACGCCCCTCGATTTCTTC 61.146 60.000 0.00 0.00 41.67 2.87
3226 3885 6.349347 CGATTTCTTCGCTGTTGTTTTTAG 57.651 37.500 0.00 0.00 41.69 1.85
3228 3887 4.624336 TTCTTCGCTGTTGTTTTTAGCA 57.376 36.364 0.00 0.00 37.29 3.49
3229 3888 4.829064 TCTTCGCTGTTGTTTTTAGCAT 57.171 36.364 0.00 0.00 37.29 3.79
3230 3889 5.181690 TCTTCGCTGTTGTTTTTAGCATT 57.818 34.783 0.00 0.00 37.29 3.56
3231 3890 4.975502 TCTTCGCTGTTGTTTTTAGCATTG 59.024 37.500 0.00 0.00 37.29 2.82
3232 3891 4.300189 TCGCTGTTGTTTTTAGCATTGT 57.700 36.364 0.00 0.00 37.29 2.71
3234 3893 5.209240 TCGCTGTTGTTTTTAGCATTGTAC 58.791 37.500 0.00 0.00 37.29 2.90
3237 4015 7.021196 CGCTGTTGTTTTTAGCATTGTACTAT 58.979 34.615 0.00 0.00 37.29 2.12
3255 4033 7.892609 TGTACTATATCGTTTATGATGCCTGT 58.107 34.615 0.00 0.00 0.00 4.00
3256 4034 8.364894 TGTACTATATCGTTTATGATGCCTGTT 58.635 33.333 0.00 0.00 0.00 3.16
3345 4127 6.137794 TGCACGTTTTATGGAGAAGAAAAA 57.862 33.333 0.00 0.00 0.00 1.94
3381 4163 4.341235 TGATAAGCGTTGGTAGTATCTGCT 59.659 41.667 0.00 0.00 0.00 4.24
3382 4164 2.586258 AGCGTTGGTAGTATCTGCTG 57.414 50.000 0.00 0.00 0.00 4.41
3385 4167 2.099263 GCGTTGGTAGTATCTGCTGAGA 59.901 50.000 0.00 0.00 0.00 3.27
3503 4301 9.625747 TCCCTTTTAATTTCTTTCAAATTGCTT 57.374 25.926 3.12 0.00 32.64 3.91
3541 4343 3.865745 CGGTTCAGACCTGTGATGATAAC 59.134 47.826 0.00 0.00 44.20 1.89
3553 4355 7.126421 ACCTGTGATGATAACCAGAAGAAGTAT 59.874 37.037 0.00 0.00 0.00 2.12
3576 4378 3.385433 TCGGGAGAAGCGGTTTGATTATA 59.615 43.478 0.00 0.00 34.75 0.98
3670 4482 9.610705 AACTATAGCCATTATCAGCTATCATTG 57.389 33.333 7.73 1.71 46.81 2.82
3684 4496 0.538516 TCATTGTTGGGTTCCCACCG 60.539 55.000 10.41 0.00 45.39 4.94
3688 4500 1.149854 GTTGGGTTCCCACCGTCTT 59.850 57.895 10.41 0.00 45.39 3.01
3699 4511 0.668706 CACCGTCTTCAGGCACAGAG 60.669 60.000 0.00 0.00 0.00 3.35
3768 4581 4.160642 TCCATGTATGAGAATGCAAGCT 57.839 40.909 0.00 0.00 0.00 3.74
3769 4582 5.294734 TCCATGTATGAGAATGCAAGCTA 57.705 39.130 0.00 0.00 0.00 3.32
3770 4583 5.059161 TCCATGTATGAGAATGCAAGCTAC 58.941 41.667 0.00 0.00 0.00 3.58
3771 4584 4.818005 CCATGTATGAGAATGCAAGCTACA 59.182 41.667 0.00 0.00 0.00 2.74
3772 4585 5.049612 CCATGTATGAGAATGCAAGCTACAG 60.050 44.000 0.00 0.00 0.00 2.74
3826 4738 5.144100 ACACAAAAATGACCCTCAACCATA 58.856 37.500 0.00 0.00 0.00 2.74
3827 4739 5.243730 ACACAAAAATGACCCTCAACCATAG 59.756 40.000 0.00 0.00 0.00 2.23
3849 4761 0.032017 AGAGGCCGGGTTAGTCATCT 60.032 55.000 2.18 0.00 0.00 2.90
3855 4767 2.320781 CCGGGTTAGTCATCTCCTGAT 58.679 52.381 0.00 0.00 35.97 2.90
3874 4786 6.738352 CTGATTAGGAAAATAAACATGCGC 57.262 37.500 0.00 0.00 0.00 6.09
3929 4841 2.027837 ACCAAAGTCCGGGTACATGTAC 60.028 50.000 25.00 25.00 35.09 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.116531 GTTACCTGGCGTGCGACC 61.117 66.667 0.00 0.00 0.00 4.79
205 206 1.955080 GGTCATCTACTACGACCCCAG 59.045 57.143 0.00 0.00 42.87 4.45
752 778 1.209747 AGAATAGCCCAAACGGAGGAC 59.790 52.381 0.00 0.00 0.00 3.85
759 785 2.161609 CGTTCACCAGAATAGCCCAAAC 59.838 50.000 0.00 0.00 35.92 2.93
761 787 1.626321 TCGTTCACCAGAATAGCCCAA 59.374 47.619 0.00 0.00 35.92 4.12
762 788 1.207089 CTCGTTCACCAGAATAGCCCA 59.793 52.381 0.00 0.00 35.92 5.36
763 789 1.207329 ACTCGTTCACCAGAATAGCCC 59.793 52.381 0.00 0.00 35.92 5.19
764 790 2.541556 GACTCGTTCACCAGAATAGCC 58.458 52.381 0.00 0.00 35.92 3.93
787 823 2.493273 GAATGGAAACCTGGGCCGGA 62.493 60.000 15.75 0.00 0.00 5.14
796 832 3.424962 CGCGAAGAGAAAGAATGGAAACC 60.425 47.826 0.00 0.00 0.00 3.27
797 833 3.424962 CCGCGAAGAGAAAGAATGGAAAC 60.425 47.826 8.23 0.00 0.00 2.78
798 834 2.742053 CCGCGAAGAGAAAGAATGGAAA 59.258 45.455 8.23 0.00 0.00 3.13
799 835 2.346803 CCGCGAAGAGAAAGAATGGAA 58.653 47.619 8.23 0.00 0.00 3.53
800 836 2.007049 GCCGCGAAGAGAAAGAATGGA 61.007 52.381 8.23 0.00 0.00 3.41
801 837 0.375106 GCCGCGAAGAGAAAGAATGG 59.625 55.000 8.23 0.00 0.00 3.16
802 838 1.363744 AGCCGCGAAGAGAAAGAATG 58.636 50.000 8.23 0.00 0.00 2.67
804 840 1.736032 GCTAGCCGCGAAGAGAAAGAA 60.736 52.381 8.23 0.00 0.00 2.52
805 841 0.179134 GCTAGCCGCGAAGAGAAAGA 60.179 55.000 8.23 0.00 0.00 2.52
807 843 1.153628 GGCTAGCCGCGAAGAGAAA 60.154 57.895 20.16 0.00 40.44 2.52
809 845 2.440430 AGGCTAGCCGCGAAGAGA 60.440 61.111 27.83 0.00 41.95 3.10
810 846 2.279120 CAGGCTAGCCGCGAAGAG 60.279 66.667 27.83 9.29 41.95 2.85
811 847 3.838271 CCAGGCTAGCCGCGAAGA 61.838 66.667 27.83 0.00 41.95 2.87
819 855 1.105759 CATTTCTGGGCCAGGCTAGC 61.106 60.000 32.23 6.04 31.51 3.42
820 856 0.257039 ACATTTCTGGGCCAGGCTAG 59.743 55.000 32.23 21.36 31.51 3.42
821 857 0.255890 GACATTTCTGGGCCAGGCTA 59.744 55.000 32.23 18.13 31.51 3.93
822 858 1.000396 GACATTTCTGGGCCAGGCT 60.000 57.895 32.23 14.90 31.51 4.58
834 874 1.347707 TCTCAGTTGGGCTCGACATTT 59.652 47.619 6.76 0.00 0.00 2.32
837 877 0.247460 CATCTCAGTTGGGCTCGACA 59.753 55.000 6.76 0.00 0.00 4.35
845 885 1.450312 GGTCCCGCATCTCAGTTGG 60.450 63.158 0.00 0.00 0.00 3.77
847 887 2.990479 GGGTCCCGCATCTCAGTT 59.010 61.111 0.00 0.00 0.00 3.16
853 893 4.832608 GACACCGGGTCCCGCATC 62.833 72.222 25.88 16.75 46.86 3.91
862 902 3.470888 CCTAGGCCTGACACCGGG 61.471 72.222 17.99 2.08 41.93 5.73
863 903 2.683933 ACCTAGGCCTGACACCGG 60.684 66.667 17.99 0.00 0.00 5.28
864 904 2.893398 GACCTAGGCCTGACACCG 59.107 66.667 17.99 0.00 0.00 4.94
865 905 1.668101 CTCGACCTAGGCCTGACACC 61.668 65.000 17.99 0.00 0.00 4.16
866 906 1.810532 CTCGACCTAGGCCTGACAC 59.189 63.158 17.99 3.55 0.00 3.67
867 907 2.052690 GCTCGACCTAGGCCTGACA 61.053 63.158 17.99 0.00 0.00 3.58
868 908 2.787567 GGCTCGACCTAGGCCTGAC 61.788 68.421 17.99 0.00 42.31 3.51
869 909 2.442272 GGCTCGACCTAGGCCTGA 60.442 66.667 17.99 1.84 42.31 3.86
870 910 3.905678 CGGCTCGACCTAGGCCTG 61.906 72.222 17.99 0.87 43.29 4.85
871 911 4.444081 ACGGCTCGACCTAGGCCT 62.444 66.667 11.78 11.78 43.29 5.19
872 912 3.902086 GACGGCTCGACCTAGGCC 61.902 72.222 9.30 2.39 42.18 5.19
873 913 2.829458 AGACGGCTCGACCTAGGC 60.829 66.667 9.30 0.36 38.63 3.93
902 952 2.646862 CGACGGACGGACGATTCG 60.647 66.667 4.14 4.14 38.46 3.34
903 953 2.948134 GCGACGGACGGACGATTC 60.948 66.667 14.94 0.00 42.83 2.52
905 955 4.175489 CTGCGACGGACGGACGAT 62.175 66.667 14.94 0.00 42.83 3.73
929 979 3.939837 TTCCGCCGCTCTCTGCTTG 62.940 63.158 0.00 0.00 40.11 4.01
930 980 3.655810 CTTCCGCCGCTCTCTGCTT 62.656 63.158 0.00 0.00 40.11 3.91
931 981 4.140599 CTTCCGCCGCTCTCTGCT 62.141 66.667 0.00 0.00 40.11 4.24
954 1004 2.757077 CGCTCCTTGGTTCCCCTT 59.243 61.111 0.00 0.00 0.00 3.95
955 1005 4.035102 GCGCTCCTTGGTTCCCCT 62.035 66.667 0.00 0.00 0.00 4.79
956 1006 3.860930 TTGCGCTCCTTGGTTCCCC 62.861 63.158 9.73 0.00 0.00 4.81
957 1007 2.282180 TTGCGCTCCTTGGTTCCC 60.282 61.111 9.73 0.00 0.00 3.97
961 1011 2.203337 TTGCTTGCGCTCCTTGGT 60.203 55.556 9.73 0.00 36.97 3.67
963 1013 1.500844 CTCTTGCTTGCGCTCCTTG 59.499 57.895 9.73 0.00 36.97 3.61
965 1015 2.046507 CCTCTTGCTTGCGCTCCT 60.047 61.111 9.73 0.00 36.97 3.69
966 1016 3.808656 GCCTCTTGCTTGCGCTCC 61.809 66.667 9.73 0.00 36.87 4.70
972 1022 3.494336 CTCGCCGCCTCTTGCTTG 61.494 66.667 0.00 0.00 38.05 4.01
985 1035 4.292178 CATCCTCCTCCGCCTCGC 62.292 72.222 0.00 0.00 0.00 5.03
986 1036 3.610669 CCATCCTCCTCCGCCTCG 61.611 72.222 0.00 0.00 0.00 4.63
991 1041 1.056700 ATGAACCCCATCCTCCTCCG 61.057 60.000 0.00 0.00 0.00 4.63
995 1045 0.466922 CAGCATGAACCCCATCCTCC 60.467 60.000 0.00 0.00 39.69 4.30
996 1046 1.105759 GCAGCATGAACCCCATCCTC 61.106 60.000 0.00 0.00 39.69 3.71
997 1047 1.076485 GCAGCATGAACCCCATCCT 60.076 57.895 0.00 0.00 39.69 3.24
998 1048 2.484062 CGCAGCATGAACCCCATCC 61.484 63.158 0.00 0.00 39.69 3.51
1136 1186 2.445654 GCAGAGGGGAGGAGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
1138 1188 2.955246 AGGCAGAGGGGAGGAGGA 60.955 66.667 0.00 0.00 0.00 3.71
1141 1191 2.366167 CAGAGGCAGAGGGGAGGA 59.634 66.667 0.00 0.00 0.00 3.71
1142 1192 3.478274 GCAGAGGCAGAGGGGAGG 61.478 72.222 0.00 0.00 40.72 4.30
1143 1193 3.847602 CGCAGAGGCAGAGGGGAG 61.848 72.222 0.00 0.00 41.24 4.30
1144 1194 4.704103 ACGCAGAGGCAGAGGGGA 62.704 66.667 0.00 0.00 41.24 4.81
1145 1195 4.154347 GACGCAGAGGCAGAGGGG 62.154 72.222 0.00 0.00 41.24 4.79
1146 1196 3.073735 AGACGCAGAGGCAGAGGG 61.074 66.667 0.00 0.00 41.24 4.30
1147 1197 2.346541 TGAGACGCAGAGGCAGAGG 61.347 63.158 0.00 0.00 41.24 3.69
1148 1198 3.282271 TGAGACGCAGAGGCAGAG 58.718 61.111 0.00 0.00 41.24 3.35
1157 1207 0.393132 AGTCCGAGATCTGAGACGCA 60.393 55.000 0.00 0.00 34.41 5.24
1158 1208 0.306533 GAGTCCGAGATCTGAGACGC 59.693 60.000 0.00 4.80 34.41 5.19
1161 1211 2.637947 CACAGAGTCCGAGATCTGAGA 58.362 52.381 14.67 0.00 44.68 3.27
1176 1226 1.964448 CACGGAGTAGTGGCACAGA 59.036 57.895 21.41 4.04 41.61 3.41
1184 1234 1.192428 GTTGGGATCCACGGAGTAGT 58.808 55.000 15.23 0.00 41.61 2.73
1186 1236 1.324740 CGGTTGGGATCCACGGAGTA 61.325 60.000 15.23 0.00 41.61 2.59
1189 1239 4.090588 GCGGTTGGGATCCACGGA 62.091 66.667 15.23 0.00 30.78 4.69
1195 1245 4.778143 ACAGGCGCGGTTGGGATC 62.778 66.667 8.83 0.00 0.00 3.36
1196 1246 4.778143 GACAGGCGCGGTTGGGAT 62.778 66.667 8.83 0.00 0.00 3.85
1199 1249 2.509336 CTAGACAGGCGCGGTTGG 60.509 66.667 8.83 0.00 0.00 3.77
1201 1251 2.227089 CTTCCTAGACAGGCGCGGTT 62.227 60.000 8.83 0.00 42.30 4.44
1202 1252 2.678934 TTCCTAGACAGGCGCGGT 60.679 61.111 8.83 1.11 42.30 5.68
1203 1253 1.945354 TTCTTCCTAGACAGGCGCGG 61.945 60.000 8.83 0.00 42.30 6.46
1206 1256 3.452474 CATTCTTCTTCCTAGACAGGCG 58.548 50.000 0.00 0.00 42.30 5.52
1207 1257 3.432890 CCCATTCTTCTTCCTAGACAGGC 60.433 52.174 0.00 0.00 42.30 4.85
1208 1258 3.135530 CCCCATTCTTCTTCCTAGACAGG 59.864 52.174 0.00 0.00 44.17 4.00
1210 1260 4.074799 TCCCCATTCTTCTTCCTAGACA 57.925 45.455 0.00 0.00 0.00 3.41
1212 1262 4.895836 TGATCCCCATTCTTCTTCCTAGA 58.104 43.478 0.00 0.00 0.00 2.43
1213 1263 4.041444 CCTGATCCCCATTCTTCTTCCTAG 59.959 50.000 0.00 0.00 0.00 3.02
1214 1264 3.976654 CCTGATCCCCATTCTTCTTCCTA 59.023 47.826 0.00 0.00 0.00 2.94
1215 1265 2.782341 CCTGATCCCCATTCTTCTTCCT 59.218 50.000 0.00 0.00 0.00 3.36
1216 1266 2.158549 CCCTGATCCCCATTCTTCTTCC 60.159 54.545 0.00 0.00 0.00 3.46
1217 1267 2.780010 TCCCTGATCCCCATTCTTCTTC 59.220 50.000 0.00 0.00 0.00 2.87
1218 1268 2.863884 TCCCTGATCCCCATTCTTCTT 58.136 47.619 0.00 0.00 0.00 2.52
1219 1269 2.594536 TCCCTGATCCCCATTCTTCT 57.405 50.000 0.00 0.00 0.00 2.85
1221 1271 2.023984 GGTTTCCCTGATCCCCATTCTT 60.024 50.000 0.00 0.00 0.00 2.52
1222 1272 1.570979 GGTTTCCCTGATCCCCATTCT 59.429 52.381 0.00 0.00 0.00 2.40
1223 1273 1.411644 GGGTTTCCCTGATCCCCATTC 60.412 57.143 0.00 0.00 41.34 2.67
1225 1275 2.332301 GGGTTTCCCTGATCCCCAT 58.668 57.895 0.00 0.00 41.34 4.00
1226 1276 3.850061 GGGTTTCCCTGATCCCCA 58.150 61.111 0.00 0.00 41.34 4.96
1237 1299 2.980177 CGGGGAGGAAGGGGGTTTC 61.980 68.421 0.00 0.00 0.00 2.78
1240 1302 4.416601 CTCGGGGAGGAAGGGGGT 62.417 72.222 0.00 0.00 0.00 4.95
1254 1316 0.387622 TAGAACCAAACGCCGTCTCG 60.388 55.000 0.00 0.00 0.00 4.04
1256 1318 1.869132 GTTTAGAACCAAACGCCGTCT 59.131 47.619 0.00 0.00 0.00 4.18
1268 1420 8.870879 GTGCGATTCATATATAGGGTTTAGAAC 58.129 37.037 0.00 0.00 0.00 3.01
1269 1421 8.812972 AGTGCGATTCATATATAGGGTTTAGAA 58.187 33.333 0.00 0.00 0.00 2.10
1270 1422 8.362464 AGTGCGATTCATATATAGGGTTTAGA 57.638 34.615 0.00 0.00 0.00 2.10
1271 1423 8.873830 CAAGTGCGATTCATATATAGGGTTTAG 58.126 37.037 0.00 0.00 0.00 1.85
1272 1424 8.372459 ACAAGTGCGATTCATATATAGGGTTTA 58.628 33.333 0.00 0.00 0.00 2.01
1273 1425 7.173218 CACAAGTGCGATTCATATATAGGGTTT 59.827 37.037 0.00 0.00 0.00 3.27
1274 1426 6.650807 CACAAGTGCGATTCATATATAGGGTT 59.349 38.462 0.00 0.00 0.00 4.11
1275 1427 6.014584 TCACAAGTGCGATTCATATATAGGGT 60.015 38.462 0.00 0.00 0.00 4.34
1276 1428 6.398095 TCACAAGTGCGATTCATATATAGGG 58.602 40.000 0.00 0.00 0.00 3.53
1277 1429 8.484641 AATCACAAGTGCGATTCATATATAGG 57.515 34.615 0.00 0.00 0.00 2.57
1278 1430 9.964253 GAAATCACAAGTGCGATTCATATATAG 57.036 33.333 0.00 0.00 30.64 1.31
1279 1431 8.935844 GGAAATCACAAGTGCGATTCATATATA 58.064 33.333 11.60 0.00 30.64 0.86
1280 1432 7.663081 AGGAAATCACAAGTGCGATTCATATAT 59.337 33.333 11.60 0.00 30.64 0.86
1281 1433 6.992123 AGGAAATCACAAGTGCGATTCATATA 59.008 34.615 11.60 0.00 30.64 0.86
1282 1434 5.824624 AGGAAATCACAAGTGCGATTCATAT 59.175 36.000 11.60 0.00 30.64 1.78
1283 1435 5.185454 AGGAAATCACAAGTGCGATTCATA 58.815 37.500 11.60 0.00 30.64 2.15
1287 1439 5.647658 TGATTAGGAAATCACAAGTGCGATT 59.352 36.000 0.00 0.00 45.17 3.34
1304 1458 9.458727 AATGATGCTAATAGGAACATGATTAGG 57.541 33.333 5.41 0.00 34.89 2.69
1308 1513 6.152323 GCCAATGATGCTAATAGGAACATGAT 59.848 38.462 5.41 0.00 30.12 2.45
1316 1521 2.086869 CCGGCCAATGATGCTAATAGG 58.913 52.381 2.24 0.00 0.00 2.57
1319 1524 1.181098 GGCCGGCCAATGATGCTAAT 61.181 55.000 40.73 0.00 35.81 1.73
1333 1538 1.659794 CAAACAGTTTCAGGGCCGG 59.340 57.895 0.00 0.00 0.00 6.13
1335 1540 1.367471 GGCAAACAGTTTCAGGGCC 59.633 57.895 8.86 8.86 0.00 5.80
1347 1552 0.598065 CAAGTAGGGTGCTGGCAAAC 59.402 55.000 0.00 0.00 0.00 2.93
1349 1554 1.074775 CCAAGTAGGGTGCTGGCAA 59.925 57.895 0.00 0.00 0.00 4.52
1350 1555 1.845664 TCCAAGTAGGGTGCTGGCA 60.846 57.895 0.00 0.00 38.24 4.92
1358 1563 0.762418 TGGTGTGTGTCCAAGTAGGG 59.238 55.000 0.00 0.00 38.24 3.53
1360 1565 1.691976 TCCTGGTGTGTGTCCAAGTAG 59.308 52.381 0.00 0.00 34.35 2.57
1361 1566 1.691976 CTCCTGGTGTGTGTCCAAGTA 59.308 52.381 0.00 0.00 34.35 2.24
1369 1574 1.137872 GATAGGCTCTCCTGGTGTGTG 59.862 57.143 0.00 0.00 44.08 3.82
1371 1576 0.755686 GGATAGGCTCTCCTGGTGTG 59.244 60.000 11.46 0.00 44.08 3.82
1372 1577 0.339859 TGGATAGGCTCTCCTGGTGT 59.660 55.000 18.55 0.00 44.08 4.16
1410 1615 3.189287 GGCATAATAATTCAGGCCTGACG 59.811 47.826 35.26 15.76 39.66 4.35
1415 1620 2.827921 CTGGGGCATAATAATTCAGGCC 59.172 50.000 0.00 0.00 43.51 5.19
1416 1621 3.500343 ACTGGGGCATAATAATTCAGGC 58.500 45.455 0.00 0.00 0.00 4.85
1417 1622 6.777580 ACTTTACTGGGGCATAATAATTCAGG 59.222 38.462 0.00 0.00 0.00 3.86
1418 1623 7.823745 ACTTTACTGGGGCATAATAATTCAG 57.176 36.000 0.00 0.00 0.00 3.02
1419 1624 9.875708 AATACTTTACTGGGGCATAATAATTCA 57.124 29.630 0.00 0.00 0.00 2.57
1421 1626 9.654919 ACAATACTTTACTGGGGCATAATAATT 57.345 29.630 0.00 0.00 0.00 1.40
1422 1627 9.654919 AACAATACTTTACTGGGGCATAATAAT 57.345 29.630 0.00 0.00 0.00 1.28
1423 1628 9.482175 AAACAATACTTTACTGGGGCATAATAA 57.518 29.630 0.00 0.00 0.00 1.40
1424 1629 8.908903 CAAACAATACTTTACTGGGGCATAATA 58.091 33.333 0.00 0.00 0.00 0.98
1425 1630 7.632680 GCAAACAATACTTTACTGGGGCATAAT 60.633 37.037 0.00 0.00 0.00 1.28
1426 1631 6.350612 GCAAACAATACTTTACTGGGGCATAA 60.351 38.462 0.00 0.00 0.00 1.90
1427 1632 5.126384 GCAAACAATACTTTACTGGGGCATA 59.874 40.000 0.00 0.00 0.00 3.14
1429 1634 3.257127 GCAAACAATACTTTACTGGGGCA 59.743 43.478 0.00 0.00 0.00 5.36
1430 1635 3.509967 AGCAAACAATACTTTACTGGGGC 59.490 43.478 0.00 0.00 0.00 5.80
1431 1636 4.764823 TCAGCAAACAATACTTTACTGGGG 59.235 41.667 0.00 0.00 28.95 4.96
1432 1637 5.957842 TCAGCAAACAATACTTTACTGGG 57.042 39.130 0.00 0.00 28.95 4.45
1437 1642 9.868277 CCCAAATAATCAGCAAACAATACTTTA 57.132 29.630 0.00 0.00 0.00 1.85
1438 1643 7.823799 CCCCAAATAATCAGCAAACAATACTTT 59.176 33.333 0.00 0.00 0.00 2.66
1440 1645 6.127083 CCCCCAAATAATCAGCAAACAATACT 60.127 38.462 0.00 0.00 0.00 2.12
1441 1646 6.048509 CCCCCAAATAATCAGCAAACAATAC 58.951 40.000 0.00 0.00 0.00 1.89
1444 1649 3.906846 ACCCCCAAATAATCAGCAAACAA 59.093 39.130 0.00 0.00 0.00 2.83
1445 1650 3.260380 CACCCCCAAATAATCAGCAAACA 59.740 43.478 0.00 0.00 0.00 2.83
1458 1727 3.434179 ACCACAGGCACCCCCAAA 61.434 61.111 0.00 0.00 35.39 3.28
1465 1734 2.629656 GCATCACCACCACAGGCAC 61.630 63.158 0.00 0.00 0.00 5.01
1483 1752 6.949352 AAGGTCCATAGAAGCATTAACATG 57.051 37.500 0.00 0.00 0.00 3.21
1484 1753 8.439971 TGATAAGGTCCATAGAAGCATTAACAT 58.560 33.333 0.00 0.00 0.00 2.71
1485 1754 7.801104 TGATAAGGTCCATAGAAGCATTAACA 58.199 34.615 0.00 0.00 0.00 2.41
1486 1755 7.389053 CCTGATAAGGTCCATAGAAGCATTAAC 59.611 40.741 0.00 0.00 0.00 2.01
1487 1756 7.453393 CCTGATAAGGTCCATAGAAGCATTAA 58.547 38.462 0.00 0.00 0.00 1.40
1488 1757 6.520742 GCCTGATAAGGTCCATAGAAGCATTA 60.521 42.308 0.00 0.00 0.00 1.90
1489 1758 5.747248 GCCTGATAAGGTCCATAGAAGCATT 60.747 44.000 0.00 0.00 0.00 3.56
1490 1759 4.263243 GCCTGATAAGGTCCATAGAAGCAT 60.263 45.833 0.00 0.00 0.00 3.79
1491 1760 3.071602 GCCTGATAAGGTCCATAGAAGCA 59.928 47.826 0.00 0.00 0.00 3.91
1492 1761 3.558109 GGCCTGATAAGGTCCATAGAAGC 60.558 52.174 0.00 0.00 0.00 3.86
1493 1762 3.648067 TGGCCTGATAAGGTCCATAGAAG 59.352 47.826 3.32 0.00 32.77 2.85
1494 1763 3.391296 GTGGCCTGATAAGGTCCATAGAA 59.609 47.826 13.61 0.00 37.43 2.10
1495 1764 2.972713 GTGGCCTGATAAGGTCCATAGA 59.027 50.000 13.61 0.00 37.43 1.98
1496 1765 2.975489 AGTGGCCTGATAAGGTCCATAG 59.025 50.000 13.61 0.00 37.43 2.23
1497 1766 3.060479 AGTGGCCTGATAAGGTCCATA 57.940 47.619 13.61 0.00 37.43 2.74
1498 1767 1.898863 AGTGGCCTGATAAGGTCCAT 58.101 50.000 13.61 3.36 37.43 3.41
1499 1768 2.116238 GTAGTGGCCTGATAAGGTCCA 58.884 52.381 3.32 7.92 34.41 4.02
1500 1769 2.399580 AGTAGTGGCCTGATAAGGTCC 58.600 52.381 3.32 0.24 31.23 4.46
1501 1770 4.489306 AAAGTAGTGGCCTGATAAGGTC 57.511 45.455 3.32 0.00 0.00 3.85
1502 1771 4.929146 AAAAGTAGTGGCCTGATAAGGT 57.071 40.909 3.32 0.00 0.00 3.50
1503 1772 5.990668 ACTAAAAGTAGTGGCCTGATAAGG 58.009 41.667 3.32 0.00 39.20 2.69
1504 1773 7.148239 CCAAACTAAAAGTAGTGGCCTGATAAG 60.148 40.741 3.32 0.00 39.79 1.73
1505 1774 6.657541 CCAAACTAAAAGTAGTGGCCTGATAA 59.342 38.462 3.32 0.00 39.79 1.75
1506 1775 6.177610 CCAAACTAAAAGTAGTGGCCTGATA 58.822 40.000 3.32 0.00 39.79 2.15
1507 1776 5.010282 CCAAACTAAAAGTAGTGGCCTGAT 58.990 41.667 3.32 0.00 39.79 2.90
1508 1777 4.141344 ACCAAACTAAAAGTAGTGGCCTGA 60.141 41.667 3.32 0.00 39.79 3.86
1509 1778 4.142038 ACCAAACTAAAAGTAGTGGCCTG 58.858 43.478 3.32 0.00 39.79 4.85
1510 1779 4.448720 ACCAAACTAAAAGTAGTGGCCT 57.551 40.909 3.32 0.00 39.79 5.19
1511 1780 5.532032 TGTAACCAAACTAAAAGTAGTGGCC 59.468 40.000 0.00 0.00 39.79 5.36
1512 1781 6.622833 TGTAACCAAACTAAAAGTAGTGGC 57.377 37.500 8.78 0.00 39.79 5.01
1513 1782 6.293790 GGCTGTAACCAAACTAAAAGTAGTGG 60.294 42.308 7.73 7.73 39.79 4.00
1514 1783 6.485648 AGGCTGTAACCAAACTAAAAGTAGTG 59.514 38.462 0.00 0.00 39.79 2.74
1515 1784 6.485648 CAGGCTGTAACCAAACTAAAAGTAGT 59.514 38.462 6.28 0.00 42.66 2.73
1516 1785 6.485648 ACAGGCTGTAACCAAACTAAAAGTAG 59.514 38.462 20.61 0.00 0.00 2.57
1517 1786 6.358991 ACAGGCTGTAACCAAACTAAAAGTA 58.641 36.000 20.61 0.00 0.00 2.24
1520 1789 7.308109 CGATTACAGGCTGTAACCAAACTAAAA 60.308 37.037 35.24 16.22 44.54 1.52
1524 1793 4.000988 CGATTACAGGCTGTAACCAAACT 58.999 43.478 35.24 21.95 44.54 2.66
1530 1802 3.867493 GGTTACCGATTACAGGCTGTAAC 59.133 47.826 35.24 26.79 44.54 2.50
1536 1808 1.296727 GCTGGTTACCGATTACAGGC 58.703 55.000 0.00 0.00 0.00 4.85
1538 1810 3.242739 GCATTGCTGGTTACCGATTACAG 60.243 47.826 0.16 0.00 0.00 2.74
1542 1814 1.102978 GGCATTGCTGGTTACCGATT 58.897 50.000 8.82 0.00 0.00 3.34
1555 1877 5.122711 GGAGGTGAAAATCAAAATGGCATTG 59.877 40.000 14.47 3.76 0.00 2.82
1562 1884 4.263025 GGCCAAGGAGGTGAAAATCAAAAT 60.263 41.667 0.00 0.00 40.61 1.82
1569 1891 0.536460 GTCGGCCAAGGAGGTGAAAA 60.536 55.000 2.24 0.00 40.61 2.29
1573 1896 2.046892 CTGTCGGCCAAGGAGGTG 60.047 66.667 2.24 0.00 40.61 4.00
1579 1902 0.320374 TACTGGAACTGTCGGCCAAG 59.680 55.000 2.24 0.00 41.74 3.61
1580 1903 0.034337 GTACTGGAACTGTCGGCCAA 59.966 55.000 2.24 0.00 41.74 4.52
1585 1908 2.609737 GGAAGTGGTACTGGAACTGTCG 60.610 54.545 0.00 0.00 41.74 4.35
1606 1929 6.528423 GCCAAGATAACTATACTACATCGCAG 59.472 42.308 0.00 0.00 0.00 5.18
1609 1932 8.516234 AGAAGCCAAGATAACTATACTACATCG 58.484 37.037 0.00 0.00 0.00 3.84
1618 1941 6.567602 AACCTGAGAAGCCAAGATAACTAT 57.432 37.500 0.00 0.00 0.00 2.12
1620 1943 4.917906 AACCTGAGAAGCCAAGATAACT 57.082 40.909 0.00 0.00 0.00 2.24
1621 1944 6.599638 ACAATAACCTGAGAAGCCAAGATAAC 59.400 38.462 0.00 0.00 0.00 1.89
1622 1945 6.721318 ACAATAACCTGAGAAGCCAAGATAA 58.279 36.000 0.00 0.00 0.00 1.75
1623 1946 6.313519 ACAATAACCTGAGAAGCCAAGATA 57.686 37.500 0.00 0.00 0.00 1.98
1624 1947 5.184892 ACAATAACCTGAGAAGCCAAGAT 57.815 39.130 0.00 0.00 0.00 2.40
1634 1957 7.565680 ACTACCCAATAGAACAATAACCTGAG 58.434 38.462 0.00 0.00 34.65 3.35
1635 1958 7.504926 ACTACCCAATAGAACAATAACCTGA 57.495 36.000 0.00 0.00 34.65 3.86
1638 1961 7.827729 ACTGAACTACCCAATAGAACAATAACC 59.172 37.037 0.00 0.00 34.65 2.85
1643 1966 6.212791 AGCTACTGAACTACCCAATAGAACAA 59.787 38.462 0.00 0.00 34.65 2.83
1646 1969 6.869206 AAGCTACTGAACTACCCAATAGAA 57.131 37.500 0.00 0.00 34.65 2.10
1650 1973 6.548622 TCGTATAAGCTACTGAACTACCCAAT 59.451 38.462 0.00 0.00 0.00 3.16
1653 1976 6.430616 AGATCGTATAAGCTACTGAACTACCC 59.569 42.308 0.00 0.00 0.00 3.69
1656 1979 9.217278 CCTAAGATCGTATAAGCTACTGAACTA 57.783 37.037 0.00 0.00 0.00 2.24
1667 1990 8.512966 TCAGATCATCCCTAAGATCGTATAAG 57.487 38.462 0.00 0.00 44.10 1.73
1670 1993 5.890985 CCTCAGATCATCCCTAAGATCGTAT 59.109 44.000 0.00 0.00 44.10 3.06
1672 1995 4.085733 CCTCAGATCATCCCTAAGATCGT 58.914 47.826 0.00 0.00 44.10 3.73
1673 1996 3.119173 GCCTCAGATCATCCCTAAGATCG 60.119 52.174 0.00 0.00 44.10 3.69
1684 2018 4.767578 ACAACACTATGCCTCAGATCAT 57.232 40.909 0.00 0.00 0.00 2.45
1686 2020 5.634896 CAAAACAACACTATGCCTCAGATC 58.365 41.667 0.00 0.00 0.00 2.75
1690 2024 2.954989 TGCAAAACAACACTATGCCTCA 59.045 40.909 0.00 0.00 36.20 3.86
1692 2026 5.476599 TCTTATGCAAAACAACACTATGCCT 59.523 36.000 0.00 0.00 36.20 4.75
1693 2027 5.708948 TCTTATGCAAAACAACACTATGCC 58.291 37.500 0.00 0.00 36.20 4.40
1695 2029 8.453320 TCAGATCTTATGCAAAACAACACTATG 58.547 33.333 0.00 0.00 0.00 2.23
1696 2030 8.565896 TCAGATCTTATGCAAAACAACACTAT 57.434 30.769 0.00 0.00 0.00 2.12
1699 2033 6.088824 CCTCAGATCTTATGCAAAACAACAC 58.911 40.000 0.00 0.00 0.00 3.32
1700 2034 5.769662 ACCTCAGATCTTATGCAAAACAACA 59.230 36.000 0.00 0.00 0.00 3.33
1701 2035 6.088824 CACCTCAGATCTTATGCAAAACAAC 58.911 40.000 0.00 0.00 0.00 3.32
1705 2222 3.696051 GGCACCTCAGATCTTATGCAAAA 59.304 43.478 15.43 0.00 34.73 2.44
1710 2227 4.082665 ACATGGCACCTCAGATCTTATG 57.917 45.455 0.00 0.00 0.00 1.90
1714 2231 1.681166 GCAACATGGCACCTCAGATCT 60.681 52.381 0.00 0.00 0.00 2.75
1739 2256 6.108687 TGAACAAAATACAACAACCATGCAA 58.891 32.000 0.00 0.00 0.00 4.08
1764 2281 2.569404 TCCCACAAACCAACTGCTTTTT 59.431 40.909 0.00 0.00 0.00 1.94
1766 2283 1.859302 TCCCACAAACCAACTGCTTT 58.141 45.000 0.00 0.00 0.00 3.51
1767 2284 2.086610 ATCCCACAAACCAACTGCTT 57.913 45.000 0.00 0.00 0.00 3.91
1768 2285 1.688197 CAATCCCACAAACCAACTGCT 59.312 47.619 0.00 0.00 0.00 4.24
1769 2286 1.873486 GCAATCCCACAAACCAACTGC 60.873 52.381 0.00 0.00 0.00 4.40
1773 2290 1.047002 CAGGCAATCCCACAAACCAA 58.953 50.000 0.00 0.00 35.39 3.67
1774 2291 0.831288 CCAGGCAATCCCACAAACCA 60.831 55.000 0.00 0.00 35.39 3.67
1775 2292 1.543944 CCCAGGCAATCCCACAAACC 61.544 60.000 0.00 0.00 35.39 3.27
1776 2293 0.541764 TCCCAGGCAATCCCACAAAC 60.542 55.000 0.00 0.00 35.39 2.93
1777 2294 0.413037 ATCCCAGGCAATCCCACAAA 59.587 50.000 0.00 0.00 35.39 2.83
1778 2295 1.215173 CTATCCCAGGCAATCCCACAA 59.785 52.381 0.00 0.00 35.39 3.33
1779 2296 0.846015 CTATCCCAGGCAATCCCACA 59.154 55.000 0.00 0.00 35.39 4.17
1780 2297 1.072965 CTCTATCCCAGGCAATCCCAC 59.927 57.143 0.00 0.00 35.39 4.61
1786 2310 5.716979 AGATACTTACTCTATCCCAGGCAA 58.283 41.667 0.00 0.00 0.00 4.52
1792 2316 8.700439 AGAACAGAAGATACTTACTCTATCCC 57.300 38.462 0.00 0.00 0.00 3.85
1802 2326 7.672239 ACCTCAGAACTAGAACAGAAGATACTT 59.328 37.037 0.00 0.00 0.00 2.24
1804 2328 7.399245 ACCTCAGAACTAGAACAGAAGATAC 57.601 40.000 0.00 0.00 0.00 2.24
1831 2355 3.631686 TGACACAAGAAACAATCACTGGG 59.368 43.478 0.00 0.00 0.00 4.45
1833 2357 6.309712 AGATGACACAAGAAACAATCACTG 57.690 37.500 0.00 0.00 0.00 3.66
1840 2364 6.039159 TGTGCATTTAGATGACACAAGAAACA 59.961 34.615 15.89 0.00 42.14 2.83
1841 2365 6.437928 TGTGCATTTAGATGACACAAGAAAC 58.562 36.000 15.89 0.00 42.14 2.78
1842 2366 6.631971 TGTGCATTTAGATGACACAAGAAA 57.368 33.333 15.89 0.31 42.14 2.52
1845 2369 6.025896 GTCATGTGCATTTAGATGACACAAG 58.974 40.000 19.58 16.81 45.52 3.16
1847 2371 5.550232 GTCATGTGCATTTAGATGACACA 57.450 39.130 18.64 18.64 45.52 3.72
1851 2375 8.565896 AAAACTAGTCATGTGCATTTAGATGA 57.434 30.769 0.00 0.00 35.16 2.92
1852 2376 8.671921 AGAAAACTAGTCATGTGCATTTAGATG 58.328 33.333 0.00 0.00 36.32 2.90
1853 2377 8.671921 CAGAAAACTAGTCATGTGCATTTAGAT 58.328 33.333 0.00 0.00 0.00 1.98
1864 2388 6.138761 GTCAAGTTGCAGAAAACTAGTCATG 58.861 40.000 0.00 0.00 39.48 3.07
1865 2389 5.239525 GGTCAAGTTGCAGAAAACTAGTCAT 59.760 40.000 0.00 0.00 39.48 3.06
1876 2400 1.768275 TCCAGAAGGTCAAGTTGCAGA 59.232 47.619 0.00 0.00 35.89 4.26
1891 2415 8.166479 ACATATTCATCCATCCATAATCCAGA 57.834 34.615 0.00 0.00 0.00 3.86
1898 2422 7.559486 GCTACAGACATATTCATCCATCCATA 58.441 38.462 0.00 0.00 0.00 2.74
1905 2429 2.996621 GGCGCTACAGACATATTCATCC 59.003 50.000 7.64 0.00 0.00 3.51
1910 2434 2.213499 GCAAGGCGCTACAGACATATT 58.787 47.619 7.64 0.00 37.77 1.28
1917 2441 1.062587 GTAATGTGCAAGGCGCTACAG 59.937 52.381 7.64 0.00 43.06 2.74
1918 2442 1.083489 GTAATGTGCAAGGCGCTACA 58.917 50.000 7.64 5.91 43.06 2.74
1919 2443 0.377203 GGTAATGTGCAAGGCGCTAC 59.623 55.000 7.64 0.00 43.06 3.58
1920 2444 0.035915 TGGTAATGTGCAAGGCGCTA 60.036 50.000 7.64 0.00 43.06 4.26
1921 2445 1.303236 TGGTAATGTGCAAGGCGCT 60.303 52.632 7.64 0.00 43.06 5.92
1922 2446 1.137404 CTGGTAATGTGCAAGGCGC 59.863 57.895 0.00 0.00 42.89 6.53
1924 2448 2.368439 TCATCTGGTAATGTGCAAGGC 58.632 47.619 0.00 0.00 0.00 4.35
1925 2449 5.240183 CCTTATCATCTGGTAATGTGCAAGG 59.760 44.000 0.00 0.00 0.00 3.61
1926 2450 5.278169 GCCTTATCATCTGGTAATGTGCAAG 60.278 44.000 0.00 0.00 0.00 4.01
1927 2451 4.580167 GCCTTATCATCTGGTAATGTGCAA 59.420 41.667 0.00 0.00 0.00 4.08
1928 2452 4.136796 GCCTTATCATCTGGTAATGTGCA 58.863 43.478 0.00 0.00 0.00 4.57
1938 2532 3.565764 TTGTCAGGGCCTTATCATCTG 57.434 47.619 1.32 0.00 0.00 2.90
1946 2540 3.624777 CAATCTACATTGTCAGGGCCTT 58.375 45.455 1.32 0.00 35.53 4.35
1948 2542 1.678101 GCAATCTACATTGTCAGGGCC 59.322 52.381 0.00 0.00 41.51 5.80
1950 2544 4.012374 ACTTGCAATCTACATTGTCAGGG 58.988 43.478 0.00 0.00 41.51 4.45
1952 2546 5.868043 TGACTTGCAATCTACATTGTCAG 57.132 39.130 0.00 0.00 41.51 3.51
1980 2574 8.549548 TGTTAACACAAAATGCATCTTCAAATG 58.450 29.630 3.59 0.00 0.00 2.32
1986 2580 5.599732 TGCTGTTAACACAAAATGCATCTT 58.400 33.333 12.39 0.00 28.23 2.40
1995 2589 3.554544 CCATGGCATGCTGTTAACACAAA 60.555 43.478 22.02 0.00 30.36 2.83
1997 2591 1.545136 CCATGGCATGCTGTTAACACA 59.455 47.619 22.02 8.60 0.00 3.72
2012 2606 7.687941 AAGTTAAGTTCAACTATGACCATGG 57.312 36.000 11.19 11.19 37.78 3.66
2022 2617 9.555727 TTGCAGATAACTAAGTTAAGTTCAACT 57.444 29.630 0.00 0.00 40.20 3.16
2032 2627 8.621532 TCAAGTCATTTGCAGATAACTAAGTT 57.378 30.769 0.00 0.00 36.70 2.66
2036 2631 6.092670 GTGCTCAAGTCATTTGCAGATAACTA 59.907 38.462 0.00 0.00 36.70 2.24
2038 2633 5.091431 GTGCTCAAGTCATTTGCAGATAAC 58.909 41.667 0.00 0.00 36.70 1.89
2041 2636 3.190744 CAGTGCTCAAGTCATTTGCAGAT 59.809 43.478 0.00 0.00 36.70 2.90
2047 2642 1.985473 TGCCAGTGCTCAAGTCATTT 58.015 45.000 0.00 0.00 38.71 2.32
2048 2643 2.089980 GATGCCAGTGCTCAAGTCATT 58.910 47.619 0.00 0.00 38.71 2.57
2049 2644 1.681166 GGATGCCAGTGCTCAAGTCAT 60.681 52.381 0.00 0.00 38.71 3.06
2050 2645 0.321919 GGATGCCAGTGCTCAAGTCA 60.322 55.000 0.00 0.00 38.71 3.41
2053 2648 1.134367 CAATGGATGCCAGTGCTCAAG 59.866 52.381 0.67 0.00 42.54 3.02
2055 2650 2.876581 CAATGGATGCCAGTGCTCA 58.123 52.632 0.67 0.00 42.54 4.26
2066 2661 4.918588 TGAGATATGCTGCATCAATGGAT 58.081 39.130 19.90 5.67 0.00 3.41
2067 2662 4.324267 CTGAGATATGCTGCATCAATGGA 58.676 43.478 19.90 0.00 0.00 3.41
2068 2663 3.440522 CCTGAGATATGCTGCATCAATGG 59.559 47.826 19.90 10.97 0.00 3.16
2069 2664 4.324267 TCCTGAGATATGCTGCATCAATG 58.676 43.478 19.90 6.17 0.00 2.82
2070 2665 4.635699 TCCTGAGATATGCTGCATCAAT 57.364 40.909 19.90 8.08 0.00 2.57
2092 2687 5.291971 GTTCTGCCAATGAAACTGAAATGT 58.708 37.500 0.00 0.00 0.00 2.71
2094 2689 4.344679 TGGTTCTGCCAATGAAACTGAAAT 59.655 37.500 0.00 0.00 45.94 2.17
2112 2707 4.340950 TGTTGGAACTTGGAAGATTGGTTC 59.659 41.667 0.00 0.00 36.53 3.62
2196 2792 7.825270 ACGTTATGATACAGGTAATGTCCAAAA 59.175 33.333 0.00 0.00 42.70 2.44
2199 2795 6.474140 ACGTTATGATACAGGTAATGTCCA 57.526 37.500 0.00 0.00 42.70 4.02
2200 2796 7.493320 TCAAACGTTATGATACAGGTAATGTCC 59.507 37.037 0.00 0.00 42.70 4.02
2201 2797 8.415192 TCAAACGTTATGATACAGGTAATGTC 57.585 34.615 0.00 0.00 42.70 3.06
2202 2798 8.780846 TTCAAACGTTATGATACAGGTAATGT 57.219 30.769 0.00 0.00 46.45 2.71
2203 2799 7.850982 GCTTCAAACGTTATGATACAGGTAATG 59.149 37.037 0.00 0.00 0.00 1.90
2209 2816 6.090763 TGTCAGCTTCAAACGTTATGATACAG 59.909 38.462 0.00 4.17 0.00 2.74
2211 2818 6.403333 TGTCAGCTTCAAACGTTATGATAC 57.597 37.500 0.00 3.71 0.00 2.24
2221 2828 3.248602 AGACGAACATGTCAGCTTCAAAC 59.751 43.478 0.00 0.00 41.41 2.93
2222 2829 3.466836 AGACGAACATGTCAGCTTCAAA 58.533 40.909 0.00 0.00 41.41 2.69
2232 2839 4.631131 TCTTGTTGATGAGACGAACATGT 58.369 39.130 0.00 0.00 30.00 3.21
2234 2841 5.702670 ACATTCTTGTTGATGAGACGAACAT 59.297 36.000 0.00 0.00 29.55 2.71
2270 2877 4.225267 CCCAACTTCATACTGGAAGGTACT 59.775 45.833 7.71 0.00 42.76 2.73
2271 2878 4.514401 CCCAACTTCATACTGGAAGGTAC 58.486 47.826 7.71 0.00 42.76 3.34
2288 2895 5.253330 TCATTCTGATGAAGTTACCCCAAC 58.747 41.667 0.00 0.00 39.29 3.77
2360 2972 7.230108 ACCATGGTAAATCAGACATGATGAATC 59.770 37.037 18.10 0.00 45.67 2.52
2481 3093 8.086522 GGGATAACTATACGAGCATTTGTCTTA 58.913 37.037 0.00 0.00 0.00 2.10
2488 3100 8.362464 TCTTATGGGATAACTATACGAGCATT 57.638 34.615 0.00 0.00 0.00 3.56
2538 3150 3.544834 CCGCTCAAAATCAGCATAAGACG 60.545 47.826 0.00 0.00 36.61 4.18
2549 3161 4.142752 GGTTAGTACCAACCGCTCAAAATC 60.143 45.833 7.48 0.00 44.36 2.17
2585 3197 7.444703 AGCTTTACCTCAGAGGAAGAAATAT 57.555 36.000 24.45 8.45 37.67 1.28
2587 3199 5.770685 AGCTTTACCTCAGAGGAAGAAAT 57.229 39.130 24.45 1.52 37.67 2.17
2612 3224 6.573664 TCACTTATGAAAAACATCCACAGG 57.426 37.500 0.00 0.00 40.07 4.00
2766 3378 2.290960 GCTTATCCTCAACCCAACCAGT 60.291 50.000 0.00 0.00 0.00 4.00
2780 3400 8.093307 TGTGATTTAGAGATCAGATGCTTATCC 58.907 37.037 0.00 0.00 36.76 2.59
2880 3500 1.603455 CGCTTTTCTGGGCCTCCAA 60.603 57.895 4.53 0.00 43.51 3.53
2885 3505 2.358247 TCGACGCTTTTCTGGGCC 60.358 61.111 0.00 0.00 0.00 5.80
2899 3519 2.438614 CAGCCGGAGAGGAGTCGA 60.439 66.667 5.05 0.00 45.00 4.20
3099 3751 1.000171 CCCTCAAGCAACAAAAGGAGC 60.000 52.381 0.00 0.00 0.00 4.70
3102 3754 1.703411 TCCCCTCAAGCAACAAAAGG 58.297 50.000 0.00 0.00 0.00 3.11
3103 3755 2.611224 GCATCCCCTCAAGCAACAAAAG 60.611 50.000 0.00 0.00 0.00 2.27
3108 3760 0.743097 GATGCATCCCCTCAAGCAAC 59.257 55.000 16.23 0.00 40.76 4.17
3110 3762 0.106868 CTGATGCATCCCCTCAAGCA 60.107 55.000 23.67 1.50 41.73 3.91
3111 3763 0.182061 TCTGATGCATCCCCTCAAGC 59.818 55.000 23.67 0.00 0.00 4.01
3112 3764 1.476471 GGTCTGATGCATCCCCTCAAG 60.476 57.143 23.67 13.02 0.00 3.02
3113 3765 0.548031 GGTCTGATGCATCCCCTCAA 59.452 55.000 23.67 3.07 0.00 3.02
3114 3766 0.326904 AGGTCTGATGCATCCCCTCA 60.327 55.000 23.67 5.47 0.00 3.86
3115 3767 0.842635 AAGGTCTGATGCATCCCCTC 59.157 55.000 23.67 10.99 0.00 4.30
3116 3768 1.064166 CAAAGGTCTGATGCATCCCCT 60.064 52.381 23.67 20.89 0.00 4.79
3123 3782 0.242017 GGTGTGCAAAGGTCTGATGC 59.758 55.000 0.00 0.00 40.45 3.91
3194 3853 2.679199 GAAGAAATCGAGGGGCGTC 58.321 57.895 0.00 0.00 41.80 5.19
3211 3870 4.300189 ACAATGCTAAAAACAACAGCGA 57.700 36.364 0.00 0.00 38.15 4.93
3212 3871 5.212194 AGTACAATGCTAAAAACAACAGCG 58.788 37.500 0.00 0.00 38.15 5.18
3225 3884 8.873830 GCATCATAAACGATATAGTACAATGCT 58.126 33.333 0.00 0.00 32.64 3.79
3226 3885 8.116753 GGCATCATAAACGATATAGTACAATGC 58.883 37.037 0.00 10.46 34.14 3.56
3228 3887 9.371136 CAGGCATCATAAACGATATAGTACAAT 57.629 33.333 0.00 0.00 0.00 2.71
3229 3888 8.364894 ACAGGCATCATAAACGATATAGTACAA 58.635 33.333 0.00 0.00 0.00 2.41
3230 3889 7.892609 ACAGGCATCATAAACGATATAGTACA 58.107 34.615 0.00 0.00 0.00 2.90
3231 3890 8.758633 AACAGGCATCATAAACGATATAGTAC 57.241 34.615 0.00 0.00 0.00 2.73
3232 3891 9.772973 AAAACAGGCATCATAAACGATATAGTA 57.227 29.630 0.00 0.00 0.00 1.82
3345 4127 3.265791 CGCTTATCAGCTGGACTTTTCT 58.734 45.455 15.13 0.00 44.85 2.52
3381 4163 1.133668 TGAGCTGGATCGGATCTCTCA 60.134 52.381 21.98 21.98 32.37 3.27
3382 4164 1.614996 TGAGCTGGATCGGATCTCTC 58.385 55.000 16.96 18.24 0.00 3.20
3385 4167 1.489481 TGTTGAGCTGGATCGGATCT 58.511 50.000 16.96 0.00 0.00 2.75
3503 4301 1.301401 CCGTTCCGAGCCAACAAGA 60.301 57.895 0.00 0.00 0.00 3.02
3507 4305 1.566018 CTGAACCGTTCCGAGCCAAC 61.566 60.000 8.80 0.00 0.00 3.77
3541 4343 4.688021 CTTCTCCCGAATACTTCTTCTGG 58.312 47.826 0.00 0.00 32.49 3.86
3553 4355 0.323629 ATCAAACCGCTTCTCCCGAA 59.676 50.000 0.00 0.00 0.00 4.30
3576 4378 1.750399 CAGCCGTTGCCTAATGCCT 60.750 57.895 0.00 0.00 40.16 4.75
3600 4402 3.859411 AGAACAGTCCAAGATCTCGAC 57.141 47.619 12.80 12.80 0.00 4.20
3684 4496 1.620819 TCTTCCTCTGTGCCTGAAGAC 59.379 52.381 0.00 0.00 38.55 3.01
3688 4500 1.942776 TCATCTTCCTCTGTGCCTGA 58.057 50.000 0.00 0.00 0.00 3.86
3699 4511 5.371526 TCAGCCAGTTAATGATCATCTTCC 58.628 41.667 9.06 0.00 0.00 3.46
3768 4581 4.421058 CTGTTGCGCTGACTATTACTGTA 58.579 43.478 9.73 0.00 0.00 2.74
3769 4582 3.254060 CTGTTGCGCTGACTATTACTGT 58.746 45.455 9.73 0.00 0.00 3.55
3770 4583 2.029728 GCTGTTGCGCTGACTATTACTG 59.970 50.000 9.73 0.00 0.00 2.74
3771 4584 2.271800 GCTGTTGCGCTGACTATTACT 58.728 47.619 9.73 0.00 0.00 2.24
3772 4585 1.999735 TGCTGTTGCGCTGACTATTAC 59.000 47.619 9.73 0.00 43.34 1.89
3826 4738 1.900545 GACTAACCCGGCCTCTTGCT 61.901 60.000 0.00 0.00 40.92 3.91
3827 4739 1.449778 GACTAACCCGGCCTCTTGC 60.450 63.158 0.00 0.00 40.16 4.01
3855 4767 4.420168 GCAGCGCATGTTTATTTTCCTAA 58.580 39.130 11.47 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.