Multiple sequence alignment - TraesCS1D01G361500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G361500 chr1D 100.000 6478 0 0 1 6478 444340799 444334322 0.000000e+00 11963.0
1 TraesCS1D01G361500 chr1B 93.545 3594 163 29 1695 5253 604314856 604311297 0.000000e+00 5288.0
2 TraesCS1D01G361500 chr1B 87.615 872 60 23 805 1649 604317539 604316689 0.000000e+00 968.0
3 TraesCS1D01G361500 chr1B 94.258 627 33 3 5249 5874 604311271 604310647 0.000000e+00 955.0
4 TraesCS1D01G361500 chr1B 84.831 356 24 8 1 350 604318112 604317781 1.350000e-86 331.0
5 TraesCS1D01G361500 chr1B 88.000 200 17 4 534 728 604317768 604317571 5.050000e-56 230.0
6 TraesCS1D01G361500 chr1B 97.826 46 1 0 3283 3328 448247690 448247645 5.380000e-11 80.5
7 TraesCS1D01G361500 chr1A 93.736 3225 127 28 2064 5253 539968021 539964837 0.000000e+00 4767.0
8 TraesCS1D01G361500 chr1A 87.727 1100 66 23 934 2014 539969083 539968034 0.000000e+00 1219.0
9 TraesCS1D01G361500 chr1A 92.389 565 29 1 5249 5813 539964811 539964261 0.000000e+00 793.0
10 TraesCS1D01G361500 chr1A 86.187 695 47 24 5798 6478 539964246 539963587 0.000000e+00 706.0
11 TraesCS1D01G361500 chr1A 86.146 397 26 8 1 386 539970168 539969790 1.010000e-107 401.0
12 TraesCS1D01G361500 chr1A 82.639 288 22 5 387 673 539969762 539969502 5.050000e-56 230.0
13 TraesCS1D01G361500 chr1A 83.858 254 14 9 661 890 539969484 539969234 3.930000e-52 217.0
14 TraesCS1D01G361500 chr1A 83.333 102 3 6 3283 3383 490312117 490312205 1.500000e-11 82.4
15 TraesCS1D01G361500 chr7D 89.714 350 22 5 1 350 632031172 632031507 9.980000e-118 435.0
16 TraesCS1D01G361500 chr3B 96.226 53 1 1 3278 3329 621148530 621148582 1.160000e-12 86.1
17 TraesCS1D01G361500 chr3B 97.778 45 0 1 3283 3326 126580149 126580105 6.960000e-10 76.8
18 TraesCS1D01G361500 chr6D 93.878 49 1 2 3280 3326 166762400 166762448 9.010000e-09 73.1
19 TraesCS1D01G361500 chr2D 90.741 54 5 0 3282 3335 19640286 19640339 9.010000e-09 73.1
20 TraesCS1D01G361500 chr2D 90.909 44 0 1 3338 3381 133768810 133768849 1.000000e-03 56.5
21 TraesCS1D01G361500 chr3D 87.931 58 7 0 3275 3332 327568979 327568922 1.170000e-07 69.4
22 TraesCS1D01G361500 chr5B 100.000 28 0 0 3338 3365 648617314 648617341 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G361500 chr1D 444334322 444340799 6477 True 11963.000000 11963 100.0000 1 6478 1 chr1D.!!$R1 6477
1 TraesCS1D01G361500 chr1B 604310647 604318112 7465 True 1554.400000 5288 89.6498 1 5874 5 chr1B.!!$R2 5873
2 TraesCS1D01G361500 chr1A 539963587 539970168 6581 True 1190.428571 4767 87.5260 1 6478 7 chr1A.!!$R1 6477

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 545 0.034059 AGCCATCCCGTCGAATCATC 59.966 55.000 0.00 0.00 0.00 2.92 F
1232 1444 0.038801 GGTGGCTTCTTGCTTGCTTC 60.039 55.000 0.00 0.00 42.39 3.86 F
1920 3950 0.037046 GCCAAAAGGGTGAGCAATGG 60.037 55.000 0.00 0.00 39.65 3.16 F
1960 3990 0.105224 TGAACACCGCCTTTTCGAGA 59.895 50.000 0.00 0.00 0.00 4.04 F
2055 4087 0.183492 AAGTGAGGTGCCACATGTGT 59.817 50.000 23.79 5.30 39.42 3.72 F
2056 4088 0.535780 AGTGAGGTGCCACATGTGTG 60.536 55.000 23.79 15.96 45.23 3.82 F
2652 4688 1.490693 CGCGCTGCCTTACATACTGG 61.491 60.000 5.56 0.00 0.00 4.00 F
3666 5732 2.306805 TGAAGATGACCATCCAGTTGCT 59.693 45.455 6.40 0.00 38.58 3.91 F
4080 6146 2.562298 TGGAATGATTTGGCCTGAACAC 59.438 45.455 3.32 0.00 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 3951 0.105964 AAAGCGGCCAAACTTTTCCC 59.894 50.000 2.24 0.00 32.24 3.97 R
2036 4068 0.183492 ACACATGTGGCACCTCACTT 59.817 50.000 28.64 1.52 38.40 3.16 R
3175 5238 0.943673 TTGTGTGAATCTGTGCCACG 59.056 50.000 0.00 0.00 33.78 4.94 R
3904 5970 1.002868 CACTGGAAGCAGAGGTGGG 60.003 63.158 0.00 0.00 37.60 4.61 R
4015 6081 2.160417 GGTTGCTCGGTTCTTTCAGATG 59.840 50.000 0.00 0.00 0.00 2.90 R
4045 6111 2.647299 TCATTCCAGGCCTTTCCAAGTA 59.353 45.455 0.00 0.00 37.29 2.24 R
4578 6644 4.019501 ACTGATATTGATCCCTGGAGCATC 60.020 45.833 4.77 0.98 40.37 3.91 R
5168 7234 0.107945 ATGCAGGTCTTCTTCTCGCC 60.108 55.000 0.00 0.00 0.00 5.54 R
5634 7731 1.326548 GTCGGAAACACACACTCACAC 59.673 52.381 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 82 6.283694 CCGAATCATTGAGGATCTCTTTGTA 58.716 40.000 0.00 0.00 34.92 2.41
114 121 8.335532 TGGAACTCATTGGAAATTACAACTAG 57.664 34.615 0.00 0.00 0.00 2.57
124 131 8.094798 TGGAAATTACAACTAGTTCACATGAC 57.905 34.615 4.77 0.00 0.00 3.06
125 132 7.174253 TGGAAATTACAACTAGTTCACATGACC 59.826 37.037 4.77 6.09 0.00 4.02
146 153 1.588082 GCCAAATCCAGCACACCAG 59.412 57.895 0.00 0.00 0.00 4.00
231 238 5.279156 GCAATCCAGTTCTTCCAATCAGTTT 60.279 40.000 0.00 0.00 0.00 2.66
285 292 4.981794 CCAAGATAATTGGTTTCACGACC 58.018 43.478 0.00 0.00 40.23 4.79
286 293 4.700213 CCAAGATAATTGGTTTCACGACCT 59.300 41.667 0.00 0.00 40.47 3.85
287 294 5.183140 CCAAGATAATTGGTTTCACGACCTT 59.817 40.000 0.00 0.00 40.47 3.50
375 392 1.939934 TGCATTTCCCGTCGAATCATC 59.060 47.619 0.00 0.00 0.00 2.92
425 469 5.146460 CACGACAACCATACAAAACATCTG 58.854 41.667 0.00 0.00 0.00 2.90
452 496 0.550914 ACCAGGTTCTGAAAGCCACA 59.449 50.000 0.00 0.00 32.44 4.17
472 516 2.301009 CAGAGGCAAAGGCAAAGGAAAT 59.699 45.455 0.00 0.00 43.71 2.17
480 524 4.326504 AAGGCAAAGGAAATGACAACAG 57.673 40.909 0.00 0.00 0.00 3.16
483 527 3.054878 GCAAAGGAAATGACAACAGCAG 58.945 45.455 0.00 0.00 0.00 4.24
494 538 3.958147 AACAGCAGCCATCCCGTCG 62.958 63.158 0.00 0.00 0.00 5.12
495 539 4.147449 CAGCAGCCATCCCGTCGA 62.147 66.667 0.00 0.00 0.00 4.20
496 540 3.390521 AGCAGCCATCCCGTCGAA 61.391 61.111 0.00 0.00 0.00 3.71
497 541 2.203070 GCAGCCATCCCGTCGAAT 60.203 61.111 0.00 0.00 0.00 3.34
498 542 2.247437 GCAGCCATCCCGTCGAATC 61.247 63.158 0.00 0.00 0.00 2.52
499 543 1.143838 CAGCCATCCCGTCGAATCA 59.856 57.895 0.00 0.00 0.00 2.57
500 544 0.250038 CAGCCATCCCGTCGAATCAT 60.250 55.000 0.00 0.00 0.00 2.45
501 545 0.034059 AGCCATCCCGTCGAATCATC 59.966 55.000 0.00 0.00 0.00 2.92
502 546 0.249868 GCCATCCCGTCGAATCATCA 60.250 55.000 0.00 0.00 0.00 3.07
503 547 1.810031 GCCATCCCGTCGAATCATCAA 60.810 52.381 0.00 0.00 0.00 2.57
504 548 2.771089 CCATCCCGTCGAATCATCAAT 58.229 47.619 0.00 0.00 0.00 2.57
505 549 3.864540 GCCATCCCGTCGAATCATCAATA 60.865 47.826 0.00 0.00 0.00 1.90
506 550 4.507710 CCATCCCGTCGAATCATCAATAT 58.492 43.478 0.00 0.00 0.00 1.28
507 551 5.660460 CCATCCCGTCGAATCATCAATATA 58.340 41.667 0.00 0.00 0.00 0.86
508 552 6.283694 CCATCCCGTCGAATCATCAATATAT 58.716 40.000 0.00 0.00 0.00 0.86
509 553 7.433680 CCATCCCGTCGAATCATCAATATATA 58.566 38.462 0.00 0.00 0.00 0.86
510 554 7.596621 CCATCCCGTCGAATCATCAATATATAG 59.403 40.741 0.00 0.00 0.00 1.31
511 555 7.875327 TCCCGTCGAATCATCAATATATAGA 57.125 36.000 0.00 0.00 0.00 1.98
512 556 8.288689 TCCCGTCGAATCATCAATATATAGAA 57.711 34.615 0.00 0.00 0.00 2.10
513 557 8.745590 TCCCGTCGAATCATCAATATATAGAAA 58.254 33.333 0.00 0.00 0.00 2.52
514 558 9.366216 CCCGTCGAATCATCAATATATAGAAAA 57.634 33.333 0.00 0.00 0.00 2.29
547 591 3.254166 GTGTGGGTCTTTCGTGTACTCTA 59.746 47.826 0.00 0.00 0.00 2.43
603 647 1.959985 TGACACGTGGGCATGAAAAAT 59.040 42.857 21.57 0.00 0.00 1.82
604 648 2.288091 TGACACGTGGGCATGAAAAATG 60.288 45.455 21.57 0.00 0.00 2.32
655 700 3.074412 CCATCAACAAAGTACGCCTTCT 58.926 45.455 0.00 0.00 31.27 2.85
659 734 3.807622 TCAACAAAGTACGCCTTCTTGAG 59.192 43.478 0.00 0.00 31.20 3.02
728 807 9.946165 AACCAGTTCGTAGAAGAAAAATAAAAG 57.054 29.630 0.00 0.00 45.90 2.27
786 865 9.194271 GAAGATGTCGTTATTAAGATACCCTTC 57.806 37.037 0.00 0.00 36.34 3.46
787 866 7.368833 AGATGTCGTTATTAAGATACCCTTCG 58.631 38.462 0.00 0.00 36.34 3.79
792 871 8.872845 GTCGTTATTAAGATACCCTTCGAAAAA 58.127 33.333 0.00 0.00 36.34 1.94
844 945 5.774498 AGGCAAAACAGTTAAGAAAGAGG 57.226 39.130 0.00 0.00 0.00 3.69
957 1165 2.809601 CCCACGAACTCTTCCGCG 60.810 66.667 0.00 0.00 0.00 6.46
1028 1236 1.957089 CAGACAAGTCACGACGAGAG 58.043 55.000 0.00 0.00 36.20 3.20
1088 1300 3.423154 GTTGCTCGTCCCTTGGCG 61.423 66.667 0.00 0.00 0.00 5.69
1193 1405 4.923415 AGCTTGGGAATTACTAGCTTGTT 58.077 39.130 6.03 0.00 38.99 2.83
1195 1407 5.880887 AGCTTGGGAATTACTAGCTTGTTAC 59.119 40.000 6.03 0.00 38.99 2.50
1211 1423 5.570589 GCTTGTTACAGATTGCTGATGAAAC 59.429 40.000 0.00 0.00 45.17 2.78
1212 1424 6.569226 GCTTGTTACAGATTGCTGATGAAACT 60.569 38.462 0.00 0.00 45.17 2.66
1232 1444 0.038801 GGTGGCTTCTTGCTTGCTTC 60.039 55.000 0.00 0.00 42.39 3.86
1249 1465 1.198094 TTCTCGAAGGGGGTGATGCA 61.198 55.000 0.00 0.00 0.00 3.96
1328 1556 4.695231 GTGCTGCGCAAGTGGCTG 62.695 66.667 13.05 0.00 41.47 4.85
1440 1668 1.048724 CCAAGGTCCGCCCATCTCTA 61.049 60.000 0.00 0.00 34.66 2.43
1477 1705 1.302949 CTTCCCCCATTTCCTGCGA 59.697 57.895 0.00 0.00 0.00 5.10
1478 1706 0.749454 CTTCCCCCATTTCCTGCGAG 60.749 60.000 0.00 0.00 0.00 5.03
1500 1728 2.656651 CCGCTCTGCTTCGATCCG 60.657 66.667 0.00 0.00 0.00 4.18
1501 1729 3.326210 CGCTCTGCTTCGATCCGC 61.326 66.667 0.00 0.00 0.00 5.54
1503 1731 2.236382 GCTCTGCTTCGATCCGCTG 61.236 63.158 0.00 0.00 0.00 5.18
1585 1813 1.756375 GCAACGCAGATAGCCTCACG 61.756 60.000 0.00 0.00 41.38 4.35
1599 1827 1.202734 CCTCACGATGGATGATTGGCT 60.203 52.381 0.00 0.00 0.00 4.75
1603 1831 1.417517 ACGATGGATGATTGGCTAGCA 59.582 47.619 18.24 0.00 0.00 3.49
1606 1834 3.504906 CGATGGATGATTGGCTAGCATTT 59.495 43.478 18.24 0.00 0.00 2.32
1611 1839 3.370840 TGATTGGCTAGCATTTCCAGT 57.629 42.857 18.24 1.02 0.00 4.00
1628 1856 5.534207 TCCAGTTCAATTGTTCATTGCTT 57.466 34.783 5.13 0.00 42.06 3.91
1639 1867 2.975410 TCATTGCTTGCTTTCTCGTG 57.025 45.000 0.00 0.00 0.00 4.35
1676 1904 0.679002 AGCATCATGAGTGCCACCAC 60.679 55.000 19.84 0.00 43.50 4.16
1693 1921 1.737793 CCACTTCAGTTTCGTATGGGC 59.262 52.381 0.00 0.00 0.00 5.36
1777 3801 2.489329 GCTGCTAATCCACTTTCTGCAA 59.511 45.455 0.00 0.00 0.00 4.08
1803 3827 2.525055 CGGTTTCGTTTGGCATATTGG 58.475 47.619 0.00 0.00 0.00 3.16
1825 3849 5.112686 GGCATATTCGGCATTTTTAACCAA 58.887 37.500 0.00 0.00 0.00 3.67
1845 3870 1.348036 AGAGAAAGGTTTGGTCGAGGG 59.652 52.381 0.00 0.00 0.00 4.30
1899 3925 1.512926 TTCGTCTCAAAGCCTGCTTC 58.487 50.000 4.63 0.00 34.84 3.86
1912 3942 0.316204 CTGCTTCAGCCAAAAGGGTG 59.684 55.000 7.36 7.36 41.18 4.61
1916 3946 0.106268 TTCAGCCAAAAGGGTGAGCA 60.106 50.000 15.00 0.86 45.16 4.26
1917 3947 0.106268 TCAGCCAAAAGGGTGAGCAA 60.106 50.000 11.97 0.00 40.74 3.91
1918 3948 0.971386 CAGCCAAAAGGGTGAGCAAT 59.029 50.000 7.92 0.00 39.42 3.56
1919 3949 0.971386 AGCCAAAAGGGTGAGCAATG 59.029 50.000 0.00 0.00 39.65 2.82
1920 3950 0.037046 GCCAAAAGGGTGAGCAATGG 60.037 55.000 0.00 0.00 39.65 3.16
1921 3951 0.609662 CCAAAAGGGTGAGCAATGGG 59.390 55.000 0.00 0.00 0.00 4.00
1922 3952 0.609662 CAAAAGGGTGAGCAATGGGG 59.390 55.000 0.00 0.00 0.00 4.96
1960 3990 0.105224 TGAACACCGCCTTTTCGAGA 59.895 50.000 0.00 0.00 0.00 4.04
1964 3994 0.600255 CACCGCCTTTTCGAGACTGT 60.600 55.000 0.00 0.00 0.00 3.55
1992 4024 1.742308 TGCAGAAAGGGGTTAGGAGT 58.258 50.000 0.00 0.00 0.00 3.85
1995 4027 3.263425 TGCAGAAAGGGGTTAGGAGTAAG 59.737 47.826 0.00 0.00 0.00 2.34
1996 4028 3.518303 GCAGAAAGGGGTTAGGAGTAAGA 59.482 47.826 0.00 0.00 0.00 2.10
2002 4034 4.445564 AGGGGTTAGGAGTAAGAAATGGT 58.554 43.478 0.00 0.00 0.00 3.55
2020 4052 9.665719 AGAAATGGTTGTTAATTTGTTTTGTCT 57.334 25.926 0.00 0.00 0.00 3.41
2022 4054 8.432110 AATGGTTGTTAATTTGTTTTGTCTCC 57.568 30.769 0.00 0.00 0.00 3.71
2023 4055 6.342111 TGGTTGTTAATTTGTTTTGTCTCCC 58.658 36.000 0.00 0.00 0.00 4.30
2024 4056 6.155393 TGGTTGTTAATTTGTTTTGTCTCCCT 59.845 34.615 0.00 0.00 0.00 4.20
2026 4058 7.551262 GGTTGTTAATTTGTTTTGTCTCCCTTT 59.449 33.333 0.00 0.00 0.00 3.11
2027 4059 8.600625 GTTGTTAATTTGTTTTGTCTCCCTTTC 58.399 33.333 0.00 0.00 0.00 2.62
2028 4060 7.841956 TGTTAATTTGTTTTGTCTCCCTTTCA 58.158 30.769 0.00 0.00 0.00 2.69
2029 4061 8.482128 TGTTAATTTGTTTTGTCTCCCTTTCAT 58.518 29.630 0.00 0.00 0.00 2.57
2030 4062 8.978539 GTTAATTTGTTTTGTCTCCCTTTCATC 58.021 33.333 0.00 0.00 0.00 2.92
2031 4063 6.983906 ATTTGTTTTGTCTCCCTTTCATCT 57.016 33.333 0.00 0.00 0.00 2.90
2032 4064 6.790232 TTTGTTTTGTCTCCCTTTCATCTT 57.210 33.333 0.00 0.00 0.00 2.40
2033 4065 6.790232 TTGTTTTGTCTCCCTTTCATCTTT 57.210 33.333 0.00 0.00 0.00 2.52
2034 4066 6.790232 TGTTTTGTCTCCCTTTCATCTTTT 57.210 33.333 0.00 0.00 0.00 2.27
2036 4068 8.299990 TGTTTTGTCTCCCTTTCATCTTTTTA 57.700 30.769 0.00 0.00 0.00 1.52
2037 4069 8.754080 TGTTTTGTCTCCCTTTCATCTTTTTAA 58.246 29.630 0.00 0.00 0.00 1.52
2038 4070 9.249457 GTTTTGTCTCCCTTTCATCTTTTTAAG 57.751 33.333 0.00 0.00 0.00 1.85
2039 4071 8.533569 TTTGTCTCCCTTTCATCTTTTTAAGT 57.466 30.769 0.00 0.00 0.00 2.24
2040 4072 7.510549 TGTCTCCCTTTCATCTTTTTAAGTG 57.489 36.000 0.00 0.00 0.00 3.16
2041 4073 7.287061 TGTCTCCCTTTCATCTTTTTAAGTGA 58.713 34.615 0.00 0.00 0.00 3.41
2042 4074 7.445402 TGTCTCCCTTTCATCTTTTTAAGTGAG 59.555 37.037 0.00 0.00 0.00 3.51
2043 4075 6.942576 TCTCCCTTTCATCTTTTTAAGTGAGG 59.057 38.462 0.00 0.00 0.00 3.86
2045 4077 6.490040 TCCCTTTCATCTTTTTAAGTGAGGTG 59.510 38.462 0.00 0.00 0.00 4.00
2046 4078 6.152379 CCTTTCATCTTTTTAAGTGAGGTGC 58.848 40.000 0.00 0.00 0.00 5.01
2047 4079 5.705609 TTCATCTTTTTAAGTGAGGTGCC 57.294 39.130 0.00 0.00 0.00 5.01
2048 4080 4.724399 TCATCTTTTTAAGTGAGGTGCCA 58.276 39.130 0.00 0.00 0.00 4.92
2049 4081 4.518970 TCATCTTTTTAAGTGAGGTGCCAC 59.481 41.667 0.00 0.00 37.32 5.01
2051 4083 4.469657 TCTTTTTAAGTGAGGTGCCACAT 58.530 39.130 0.00 0.00 39.42 3.21
2053 4085 2.949177 TTAAGTGAGGTGCCACATGT 57.051 45.000 0.00 0.00 39.42 3.21
2055 4087 0.183492 AAGTGAGGTGCCACATGTGT 59.817 50.000 23.79 5.30 39.42 3.72
2056 4088 0.535780 AGTGAGGTGCCACATGTGTG 60.536 55.000 23.79 15.96 45.23 3.82
2075 4107 2.242926 TGGAACAAAAATCCATGGCGA 58.757 42.857 6.96 0.00 41.98 5.54
2076 4108 2.630098 TGGAACAAAAATCCATGGCGAA 59.370 40.909 6.96 0.00 41.98 4.70
2082 4114 7.382218 GGAACAAAAATCCATGGCGAATTATAG 59.618 37.037 6.96 0.00 36.92 1.31
2093 4125 6.892658 TGGCGAATTATAGGCATACATTTT 57.107 33.333 0.00 0.00 38.02 1.82
2114 4146 6.704512 TTTTTCGGCTTAAATTTGCAGATC 57.295 33.333 0.00 0.00 33.87 2.75
2136 4168 6.942532 TCGATATCGATGATCATACATCCA 57.057 37.500 23.48 0.00 44.22 3.41
2137 4169 7.516198 TCGATATCGATGATCATACATCCAT 57.484 36.000 23.48 0.00 44.22 3.41
2138 4170 8.621532 TCGATATCGATGATCATACATCCATA 57.378 34.615 23.48 0.00 44.22 2.74
2256 4288 4.533222 CGGGCACGATTGGTAATTTAATC 58.467 43.478 0.00 0.00 44.60 1.75
2283 4315 8.650714 GTTATCTCATTTGTTGGAAAAGAATGC 58.349 33.333 0.00 0.00 33.15 3.56
2307 4339 1.926510 GACAAAACAGTTGTTGGCAGC 59.073 47.619 0.00 0.00 38.44 5.25
2313 4345 1.610522 ACAGTTGTTGGCAGCTCAATC 59.389 47.619 2.28 0.00 33.81 2.67
2360 4392 3.447950 AGGAATTGGGTCCTACTACGTT 58.552 45.455 0.00 0.00 46.69 3.99
2361 4393 3.197116 AGGAATTGGGTCCTACTACGTTG 59.803 47.826 0.00 0.00 46.69 4.10
2362 4394 3.055602 GGAATTGGGTCCTACTACGTTGT 60.056 47.826 7.95 7.95 34.56 3.32
2363 4395 3.604875 ATTGGGTCCTACTACGTTGTG 57.395 47.619 13.03 3.15 0.00 3.33
2368 4400 2.352127 GGTCCTACTACGTTGTGTCCAC 60.352 54.545 13.03 4.26 0.00 4.02
2396 4428 4.638421 GCAAATAGGCATTGTGTAGTGGTA 59.362 41.667 0.00 0.00 0.00 3.25
2462 4494 9.638239 TCTGTGAATAAATATTTCAAAGCAACC 57.362 29.630 3.39 0.00 0.00 3.77
2569 4605 4.341806 CACCTGGATGCCTTTTAATATGCA 59.658 41.667 0.00 0.00 38.23 3.96
2579 4615 7.319646 TGCCTTTTAATATGCATTTCGACTTT 58.680 30.769 3.54 0.00 0.00 2.66
2652 4688 1.490693 CGCGCTGCCTTACATACTGG 61.491 60.000 5.56 0.00 0.00 4.00
2725 4761 6.292381 GCAAGCTGTAATTCGTAGGTAATCAG 60.292 42.308 0.00 0.00 0.00 2.90
2775 4811 2.618241 GGTGCAATTCAGACACACTTCA 59.382 45.455 0.00 0.00 36.00 3.02
2835 4873 6.962902 AGCTAGTCTTATATATTGCTCCCCTT 59.037 38.462 0.00 0.00 0.00 3.95
2950 5013 2.808919 TCAGACTAGCTGCAACTAGGT 58.191 47.619 24.27 12.39 43.34 3.08
2982 5045 4.023193 GCTACTATGGTTGTGTGTTGCTTT 60.023 41.667 0.00 0.00 0.00 3.51
3125 5188 2.930682 GTTCTCGGGTAAATCACTGCTC 59.069 50.000 0.00 0.00 0.00 4.26
3127 5190 2.766263 TCTCGGGTAAATCACTGCTCAT 59.234 45.455 0.00 0.00 0.00 2.90
3153 5216 6.017400 ACTTTCAATTGCACGAATCTTCAT 57.983 33.333 0.00 0.00 0.00 2.57
3265 5328 6.257849 GGAAAACTTAAAAAGCTGTTTCTGGG 59.742 38.462 4.78 0.00 32.35 4.45
3410 5474 9.440761 AAAATTATTTGGTTATGGGCTGGTATA 57.559 29.630 0.00 0.00 0.00 1.47
3450 5515 6.321945 TCCGTGTCACACCTTAGCTTATTATA 59.678 38.462 1.24 0.00 0.00 0.98
3451 5516 7.014905 TCCGTGTCACACCTTAGCTTATTATAT 59.985 37.037 1.24 0.00 0.00 0.86
3666 5732 2.306805 TGAAGATGACCATCCAGTTGCT 59.693 45.455 6.40 0.00 38.58 3.91
3703 5769 9.722056 ATATCATTCGTGAAACTTTGAATAAGC 57.278 29.630 0.00 0.00 30.33 3.09
3794 5860 7.222161 TCAGATTATCTTGTGATGGAAGATGG 58.778 38.462 0.00 0.00 39.86 3.51
3795 5861 6.002704 AGATTATCTTGTGATGGAAGATGGC 58.997 40.000 0.00 0.00 39.86 4.40
3904 5970 7.219344 GTGGCGTTTGTAAAACATATGAATACC 59.781 37.037 10.38 0.00 0.00 2.73
3951 6017 2.821991 ACGAAGGTGAAGACTTCAGG 57.178 50.000 18.24 8.06 43.43 3.86
4001 6067 4.532126 TCACTCCCACAACTCAAGTCATAT 59.468 41.667 0.00 0.00 0.00 1.78
4010 6076 8.246180 CCACAACTCAAGTCATATGCTTTTTAT 58.754 33.333 8.96 0.00 0.00 1.40
4080 6146 2.562298 TGGAATGATTTGGCCTGAACAC 59.438 45.455 3.32 0.00 0.00 3.32
4144 6210 7.441890 TCAGTTACTTCAGTGAAGACTCTAG 57.558 40.000 34.16 19.75 41.71 2.43
4425 6491 7.967303 GCCAAACTTGATCTTATTTTCTCTCAG 59.033 37.037 0.00 0.00 0.00 3.35
4441 6507 5.407502 TCTCTCAGCATTCATTTTGCATTG 58.592 37.500 0.00 0.00 42.62 2.82
4578 6644 4.408993 TCTGATGACATTTGTTTCTGCG 57.591 40.909 0.00 0.00 0.00 5.18
4781 6847 2.893637 ACATGACCATGAGTAAGTCGC 58.106 47.619 16.07 0.00 41.20 5.19
4932 6998 8.899427 ACCTATCATATGAAAGAACACATGAG 57.101 34.615 9.99 0.00 37.17 2.90
5168 7234 2.900528 GGGTGACGAGCCAATATCG 58.099 57.895 0.00 0.00 45.54 2.92
5338 7434 3.017442 GGTTGGATTCTTACAGAAGGGC 58.983 50.000 0.00 0.00 37.69 5.19
5385 7481 1.445410 GTGTGCGCGGTCTACATGA 60.445 57.895 8.83 0.00 0.00 3.07
5442 7538 5.065731 CAGAAGGCTCTAACATTCACCAATC 59.934 44.000 0.00 0.00 0.00 2.67
5450 7546 7.113658 TCTAACATTCACCAATCTAGAGGTC 57.886 40.000 0.68 0.00 35.52 3.85
5456 7552 3.632604 TCACCAATCTAGAGGTCGATGAC 59.367 47.826 0.68 0.00 35.52 3.06
5515 7611 1.548269 GAACCCTGGACTGTGAGAGAG 59.452 57.143 0.00 0.00 0.00 3.20
5526 7622 1.345415 TGTGAGAGAGCATGCAGTTCA 59.655 47.619 21.98 14.44 0.00 3.18
5594 7691 7.604164 CAGACAAGTTACCAGAATGTACAGAAT 59.396 37.037 0.33 0.00 0.00 2.40
5597 7694 7.936847 ACAAGTTACCAGAATGTACAGAATCAA 59.063 33.333 0.33 0.00 0.00 2.57
5634 7731 2.644299 TGATGCATACTAGGGATTGGGG 59.356 50.000 0.00 0.00 0.00 4.96
5709 7806 2.830651 AAGGTAGTCCGACTCCTCAT 57.169 50.000 15.69 3.88 39.05 2.90
5772 7869 3.703001 TGAGTGATGTTCTTCCCCTTC 57.297 47.619 0.00 0.00 0.00 3.46
5869 7996 7.201565 GGAGCTGCTAAGTAGAAACATGTAAAG 60.202 40.741 0.15 0.00 0.00 1.85
5875 8002 9.331106 GCTAAGTAGAAACATGTAAAGAAAAGC 57.669 33.333 0.00 0.00 0.00 3.51
5886 8013 9.855021 ACATGTAAAGAAAAGCAATATACAACC 57.145 29.630 0.00 0.00 0.00 3.77
5887 8014 9.853555 CATGTAAAGAAAAGCAATATACAACCA 57.146 29.630 0.00 0.00 0.00 3.67
5892 8019 9.435688 AAAGAAAAGCAATATACAACCAAATCC 57.564 29.630 0.00 0.00 0.00 3.01
5893 8020 7.257722 AGAAAAGCAATATACAACCAAATCCG 58.742 34.615 0.00 0.00 0.00 4.18
5894 8021 6.767524 AAAGCAATATACAACCAAATCCGA 57.232 33.333 0.00 0.00 0.00 4.55
5895 8022 5.751243 AGCAATATACAACCAAATCCGAC 57.249 39.130 0.00 0.00 0.00 4.79
5896 8023 5.437060 AGCAATATACAACCAAATCCGACT 58.563 37.500 0.00 0.00 0.00 4.18
5897 8024 5.885912 AGCAATATACAACCAAATCCGACTT 59.114 36.000 0.00 0.00 0.00 3.01
5898 8025 5.971202 GCAATATACAACCAAATCCGACTTG 59.029 40.000 0.00 0.00 0.00 3.16
5899 8026 6.183360 GCAATATACAACCAAATCCGACTTGA 60.183 38.462 0.00 0.00 0.00 3.02
5900 8027 7.627513 GCAATATACAACCAAATCCGACTTGAA 60.628 37.037 0.00 0.00 0.00 2.69
5901 8028 7.931578 ATATACAACCAAATCCGACTTGAAA 57.068 32.000 0.00 0.00 0.00 2.69
5902 8029 4.301637 ACAACCAAATCCGACTTGAAAC 57.698 40.909 0.00 0.00 0.00 2.78
5903 8030 3.697045 ACAACCAAATCCGACTTGAAACA 59.303 39.130 0.00 0.00 0.00 2.83
5904 8031 4.340950 ACAACCAAATCCGACTTGAAACAT 59.659 37.500 0.00 0.00 0.00 2.71
5905 8032 5.163457 ACAACCAAATCCGACTTGAAACATT 60.163 36.000 0.00 0.00 0.00 2.71
5906 8033 6.039941 ACAACCAAATCCGACTTGAAACATTA 59.960 34.615 0.00 0.00 0.00 1.90
5907 8034 6.009115 ACCAAATCCGACTTGAAACATTAC 57.991 37.500 0.00 0.00 0.00 1.89
5912 8039 4.710324 TCCGACTTGAAACATTACTTGGT 58.290 39.130 0.00 0.00 0.00 3.67
5920 8047 4.278170 TGAAACATTACTTGGTGAAGCTGG 59.722 41.667 0.00 0.00 31.68 4.85
5934 8061 3.765511 TGAAGCTGGAATTTCCTGGATTG 59.234 43.478 20.12 5.15 37.46 2.67
5936 8063 4.051661 AGCTGGAATTTCCTGGATTGAA 57.948 40.909 20.12 0.00 37.46 2.69
5937 8064 4.617593 AGCTGGAATTTCCTGGATTGAAT 58.382 39.130 20.12 0.00 37.46 2.57
5958 8085 8.791327 TGAATATTCAGAAGCATCTTGTTACA 57.209 30.769 14.23 0.00 32.03 2.41
5972 8099 6.764877 TCTTGTTACATTCGAACTTGAGTC 57.235 37.500 0.00 0.00 0.00 3.36
5980 8110 0.951040 CGAACTTGAGTCCAGGGCAC 60.951 60.000 0.00 0.00 0.00 5.01
6013 8143 9.403583 AGTAAGTTCCTTCAGACAACATAAAAA 57.596 29.630 0.00 0.00 0.00 1.94
6124 8256 7.719633 ACTCTGTCAGTAACCAAATACAAACAT 59.280 33.333 0.00 0.00 31.37 2.71
6128 8260 8.569641 TGTCAGTAACCAAATACAAACATAACC 58.430 33.333 0.00 0.00 0.00 2.85
6151 8283 4.882671 AATTAGCAGAACCTATGCAACG 57.117 40.909 0.00 0.00 46.31 4.10
6153 8285 1.442769 AGCAGAACCTATGCAACGTG 58.557 50.000 0.00 0.00 46.31 4.49
6161 8293 2.303600 ACCTATGCAACGTGAGGGTTTA 59.696 45.455 0.00 0.00 33.02 2.01
6185 8317 3.003480 GTGTTAGAACTCATGACCAGCC 58.997 50.000 0.00 0.00 0.00 4.85
6186 8318 2.906389 TGTTAGAACTCATGACCAGCCT 59.094 45.455 0.00 0.00 0.00 4.58
6223 8355 8.790718 AGAAAAGCTATATCATAATTGTGGCTG 58.209 33.333 2.06 0.00 0.00 4.85
6232 8364 0.540365 AATTGTGGCTGTGTCCCCTG 60.540 55.000 0.00 0.00 0.00 4.45
6238 8370 0.618458 GGCTGTGTCCCCTGTGAATA 59.382 55.000 0.00 0.00 0.00 1.75
6241 8373 2.826428 CTGTGTCCCCTGTGAATATCG 58.174 52.381 0.00 0.00 0.00 2.92
6246 8378 3.709141 TGTCCCCTGTGAATATCGATGAA 59.291 43.478 8.54 0.00 0.00 2.57
6249 8381 5.588648 GTCCCCTGTGAATATCGATGAAAAA 59.411 40.000 8.54 0.00 0.00 1.94
6250 8382 5.822519 TCCCCTGTGAATATCGATGAAAAAG 59.177 40.000 8.54 0.00 0.00 2.27
6254 8386 8.243426 CCCTGTGAATATCGATGAAAAAGAAAA 58.757 33.333 8.54 0.00 0.00 2.29
6269 8401 8.413229 TGAAAAAGAAAAGAATGGAAGTACTGG 58.587 33.333 0.00 0.00 0.00 4.00
6273 8405 9.981460 AAAGAAAAGAATGGAAGTACTGGATAT 57.019 29.630 0.00 0.00 0.00 1.63
6314 8446 1.672898 CCCCAAACATGCCAACTGG 59.327 57.895 0.00 0.00 38.53 4.00
6315 8447 1.672898 CCCAAACATGCCAACTGGG 59.327 57.895 0.00 0.00 40.85 4.45
6324 8456 2.350895 CCAACTGGGCGGTGATCA 59.649 61.111 0.00 0.00 0.00 2.92
6325 8457 1.746615 CCAACTGGGCGGTGATCAG 60.747 63.158 0.00 0.00 34.91 2.90
6326 8458 1.003355 CAACTGGGCGGTGATCAGT 60.003 57.895 0.00 0.00 42.77 3.41
6327 8459 0.249120 CAACTGGGCGGTGATCAGTA 59.751 55.000 0.00 0.00 40.41 2.74
6336 8468 3.581755 GCGGTGATCAGTAAGTTACACA 58.418 45.455 15.28 6.90 0.00 3.72
6411 8545 5.635417 TTCATCTATCTAGCATCGGACAG 57.365 43.478 0.00 0.00 0.00 3.51
6414 8548 4.837896 TCTATCTAGCATCGGACAGTTG 57.162 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.855340 TCCCTCCAACATGATTAAACTCC 58.145 43.478 0.00 0.00 0.00 3.85
76 82 8.485392 TCCAATGAGTTCCAGAAAAAGAAAATT 58.515 29.630 0.00 0.00 0.00 1.82
81 88 7.601705 ATTTCCAATGAGTTCCAGAAAAAGA 57.398 32.000 0.00 0.00 0.00 2.52
87 94 7.004086 AGTTGTAATTTCCAATGAGTTCCAGA 58.996 34.615 0.00 0.00 0.00 3.86
114 121 1.175983 TTTGGCCCGGTCATGTGAAC 61.176 55.000 0.00 0.00 0.00 3.18
124 131 3.451894 GTGCTGGATTTGGCCCGG 61.452 66.667 0.00 0.00 0.00 5.73
125 132 2.676121 TGTGCTGGATTTGGCCCG 60.676 61.111 0.00 0.00 0.00 6.13
146 153 5.277538 GCCTAAGCACATTATTCTACAGCAC 60.278 44.000 0.00 0.00 39.53 4.40
234 241 6.091986 GCCAAACAGAACAATTGACAGAAAAA 59.908 34.615 13.59 0.00 0.00 1.94
235 242 5.580297 GCCAAACAGAACAATTGACAGAAAA 59.420 36.000 13.59 0.00 0.00 2.29
236 243 5.105392 AGCCAAACAGAACAATTGACAGAAA 60.105 36.000 13.59 0.00 0.00 2.52
266 273 6.894339 AAAAGGTCGTGAAACCAATTATCT 57.106 33.333 0.00 0.00 42.12 1.98
375 392 9.041587 GTTTCGTTTCTATGAAGATCGAAAAAG 57.958 33.333 19.68 0.00 46.70 2.27
425 469 4.023107 GCTTTCAGAACCTGGTTTTAGTCC 60.023 45.833 14.28 0.00 31.51 3.85
452 496 2.086610 TTTCCTTTGCCTTTGCCTCT 57.913 45.000 0.00 0.00 36.33 3.69
460 504 2.036346 GCTGTTGTCATTTCCTTTGCCT 59.964 45.455 0.00 0.00 0.00 4.75
463 507 3.054878 GCTGCTGTTGTCATTTCCTTTG 58.945 45.455 0.00 0.00 0.00 2.77
472 516 1.303561 GGGATGGCTGCTGTTGTCA 60.304 57.895 0.00 0.00 0.00 3.58
480 524 2.203070 ATTCGACGGGATGGCTGC 60.203 61.111 0.00 0.00 0.00 5.25
483 527 0.249868 TGATGATTCGACGGGATGGC 60.250 55.000 0.00 0.00 0.00 4.40
500 544 9.908152 ACGACATCGACATTTTCTATATATTGA 57.092 29.630 8.54 0.00 43.02 2.57
501 545 9.943465 CACGACATCGACATTTTCTATATATTG 57.057 33.333 8.54 0.00 43.02 1.90
502 546 9.692749 ACACGACATCGACATTTTCTATATATT 57.307 29.630 8.54 0.00 43.02 1.28
503 547 9.129209 CACACGACATCGACATTTTCTATATAT 57.871 33.333 8.54 0.00 43.02 0.86
504 548 7.593644 CCACACGACATCGACATTTTCTATATA 59.406 37.037 8.54 0.00 43.02 0.86
505 549 6.420903 CCACACGACATCGACATTTTCTATAT 59.579 38.462 8.54 0.00 43.02 0.86
506 550 5.746721 CCACACGACATCGACATTTTCTATA 59.253 40.000 8.54 0.00 43.02 1.31
507 551 4.566759 CCACACGACATCGACATTTTCTAT 59.433 41.667 8.54 0.00 43.02 1.98
508 552 3.924073 CCACACGACATCGACATTTTCTA 59.076 43.478 8.54 0.00 43.02 2.10
509 553 2.736721 CCACACGACATCGACATTTTCT 59.263 45.455 8.54 0.00 43.02 2.52
510 554 2.159707 CCCACACGACATCGACATTTTC 60.160 50.000 8.54 0.00 43.02 2.29
511 555 1.804151 CCCACACGACATCGACATTTT 59.196 47.619 8.54 0.00 43.02 1.82
512 556 1.270625 ACCCACACGACATCGACATTT 60.271 47.619 8.54 0.00 43.02 2.32
513 557 0.320374 ACCCACACGACATCGACATT 59.680 50.000 8.54 0.00 43.02 2.71
514 558 0.108804 GACCCACACGACATCGACAT 60.109 55.000 8.54 0.00 43.02 3.06
515 559 1.176619 AGACCCACACGACATCGACA 61.177 55.000 8.54 0.00 43.02 4.35
516 560 0.038526 AAGACCCACACGACATCGAC 60.039 55.000 8.54 0.00 43.02 4.20
517 561 0.677288 AAAGACCCACACGACATCGA 59.323 50.000 8.54 0.00 43.02 3.59
518 562 1.068474 GAAAGACCCACACGACATCG 58.932 55.000 0.00 0.00 46.33 3.84
519 563 1.068474 CGAAAGACCCACACGACATC 58.932 55.000 0.00 0.00 0.00 3.06
547 591 5.155643 ACGCGGCGTAATTTAAAGAAAAAT 58.844 33.333 28.37 0.00 38.73 1.82
583 627 1.393603 TTTTTCATGCCCACGTGTCA 58.606 45.000 15.65 12.27 34.22 3.58
632 677 2.423577 AGGCGTACTTTGTTGATGGAC 58.576 47.619 0.00 0.00 0.00 4.02
637 682 3.799366 TCAAGAAGGCGTACTTTGTTGA 58.201 40.909 12.39 12.39 40.21 3.18
655 700 1.068402 CGCCATGTGCATTTCACTCAA 60.068 47.619 0.00 0.00 45.81 3.02
659 734 1.806758 GCCGCCATGTGCATTTCAC 60.807 57.895 0.00 0.00 45.82 3.18
699 778 9.940166 TTATTTTTCTTCTACGAACTGGTTTTC 57.060 29.630 0.00 0.00 0.00 2.29
792 871 7.289317 TCCTAACCGTATCATTATCCTGTCTTT 59.711 37.037 0.00 0.00 0.00 2.52
794 873 6.312529 TCCTAACCGTATCATTATCCTGTCT 58.687 40.000 0.00 0.00 0.00 3.41
795 874 6.585695 TCCTAACCGTATCATTATCCTGTC 57.414 41.667 0.00 0.00 0.00 3.51
796 875 5.047235 GCTCCTAACCGTATCATTATCCTGT 60.047 44.000 0.00 0.00 0.00 4.00
797 876 5.047306 TGCTCCTAACCGTATCATTATCCTG 60.047 44.000 0.00 0.00 0.00 3.86
799 878 5.401531 TGCTCCTAACCGTATCATTATCC 57.598 43.478 0.00 0.00 0.00 2.59
985 1193 2.238521 GGTCATCTGGGTTTTGAAGCA 58.761 47.619 0.00 0.00 0.00 3.91
1078 1290 2.579738 GTCCTCTCGCCAAGGGAC 59.420 66.667 0.00 0.00 37.83 4.46
1079 1291 2.683933 GGTCCTCTCGCCAAGGGA 60.684 66.667 0.00 0.00 34.46 4.20
1080 1292 3.003173 TGGTCCTCTCGCCAAGGG 61.003 66.667 0.00 0.00 34.46 3.95
1088 1300 2.760385 CCCGGTCCTGGTCCTCTC 60.760 72.222 8.34 0.00 0.00 3.20
1139 1351 4.514577 CCAGTACCTGCTCCCGCG 62.515 72.222 0.00 0.00 39.65 6.46
1193 1405 4.696877 CACCAGTTTCATCAGCAATCTGTA 59.303 41.667 0.00 0.00 41.10 2.74
1195 1407 3.119602 CCACCAGTTTCATCAGCAATCTG 60.120 47.826 0.00 0.00 41.67 2.90
1232 1444 1.153289 CTGCATCACCCCCTTCGAG 60.153 63.158 0.00 0.00 0.00 4.04
1392 1620 4.838486 CTCGTCGTCTGCCTCGGC 62.838 72.222 0.00 0.00 42.35 5.54
1395 1623 2.795297 CTCCTCGTCGTCTGCCTC 59.205 66.667 0.00 0.00 0.00 4.70
1396 1624 3.444805 GCTCCTCGTCGTCTGCCT 61.445 66.667 0.00 0.00 0.00 4.75
1397 1625 4.500116 GGCTCCTCGTCGTCTGCC 62.500 72.222 0.00 0.00 0.00 4.85
1398 1626 4.500116 GGGCTCCTCGTCGTCTGC 62.500 72.222 0.00 0.00 0.00 4.26
1399 1627 4.180946 CGGGCTCCTCGTCGTCTG 62.181 72.222 0.00 0.00 0.00 3.51
1440 1668 4.408596 GGAAGGGATCACTGAAGAAGAGAT 59.591 45.833 0.00 0.00 38.74 2.75
1500 1728 2.578714 CCCCTATCTCGCTCCCAGC 61.579 68.421 0.00 0.00 38.02 4.85
1501 1729 1.910772 CCCCCTATCTCGCTCCCAG 60.911 68.421 0.00 0.00 0.00 4.45
1503 1731 0.545548 AATCCCCCTATCTCGCTCCC 60.546 60.000 0.00 0.00 0.00 4.30
1508 1736 3.134804 ACACAAGAAATCCCCCTATCTCG 59.865 47.826 0.00 0.00 0.00 4.04
1510 1738 3.203040 CCACACAAGAAATCCCCCTATCT 59.797 47.826 0.00 0.00 0.00 1.98
1514 1742 0.409484 CCCACACAAGAAATCCCCCT 59.591 55.000 0.00 0.00 0.00 4.79
1585 1813 4.082354 GGAAATGCTAGCCAATCATCCATC 60.082 45.833 13.29 0.00 0.00 3.51
1599 1827 6.647334 TGAACAATTGAACTGGAAATGCTA 57.353 33.333 13.59 0.00 0.00 3.49
1628 1856 2.595124 TGAACTCACACGAGAAAGCA 57.405 45.000 0.00 0.00 42.34 3.91
1639 1867 0.441533 CTGCAGCACGATGAACTCAC 59.558 55.000 0.00 0.00 0.00 3.51
1668 1896 0.107410 ACGAAACTGAAGTGGTGGCA 60.107 50.000 0.00 0.00 0.00 4.92
1676 1904 2.355756 CCATGCCCATACGAAACTGAAG 59.644 50.000 0.00 0.00 0.00 3.02
1701 3725 1.888436 GATGACCCTCACGGCACTCA 61.888 60.000 0.00 0.00 33.26 3.41
1803 3827 6.039616 TCTTGGTTAAAAATGCCGAATATGC 58.960 36.000 0.00 0.00 0.00 3.14
1808 3832 5.776173 TTCTCTTGGTTAAAAATGCCGAA 57.224 34.783 0.00 0.00 0.00 4.30
1812 3836 7.254761 CCAAACCTTTCTCTTGGTTAAAAATGC 60.255 37.037 0.00 0.00 44.83 3.56
1825 3849 1.348036 CCCTCGACCAAACCTTTCTCT 59.652 52.381 0.00 0.00 0.00 3.10
1845 3870 4.772100 TCAGGAATTTGGAATCCTCAAACC 59.228 41.667 0.00 0.00 44.26 3.27
1899 3925 0.971386 ATTGCTCACCCTTTTGGCTG 59.029 50.000 0.00 0.00 37.83 4.85
1912 3942 2.289631 CCAAACTTTTCCCCCATTGCTC 60.290 50.000 0.00 0.00 0.00 4.26
1916 3946 1.064003 GGCCAAACTTTTCCCCCATT 58.936 50.000 0.00 0.00 0.00 3.16
1917 3947 1.191489 CGGCCAAACTTTTCCCCCAT 61.191 55.000 2.24 0.00 0.00 4.00
1918 3948 1.834822 CGGCCAAACTTTTCCCCCA 60.835 57.895 2.24 0.00 0.00 4.96
1919 3949 3.056458 CGGCCAAACTTTTCCCCC 58.944 61.111 2.24 0.00 0.00 5.40
1920 3950 1.754380 AAGCGGCCAAACTTTTCCCC 61.754 55.000 2.24 0.00 0.00 4.81
1921 3951 0.105964 AAAGCGGCCAAACTTTTCCC 59.894 50.000 2.24 0.00 32.24 3.97
1922 3952 1.597195 CAAAAGCGGCCAAACTTTTCC 59.403 47.619 19.81 0.00 42.62 3.13
1988 4020 9.758651 AACAAATTAACAACCATTTCTTACTCC 57.241 29.630 0.00 0.00 0.00 3.85
1995 4027 9.914923 GAGACAAAACAAATTAACAACCATTTC 57.085 29.630 0.00 0.00 0.00 2.17
1996 4028 8.888716 GGAGACAAAACAAATTAACAACCATTT 58.111 29.630 0.00 0.00 0.00 2.32
2002 4034 8.314751 TGAAAGGGAGACAAAACAAATTAACAA 58.685 29.630 0.00 0.00 0.00 2.83
2019 4051 6.717084 ACCTCACTTAAAAAGATGAAAGGGAG 59.283 38.462 6.27 6.27 45.16 4.30
2020 4052 6.490040 CACCTCACTTAAAAAGATGAAAGGGA 59.510 38.462 0.00 0.00 30.92 4.20
2022 4054 6.152379 GCACCTCACTTAAAAAGATGAAAGG 58.848 40.000 0.00 0.00 0.00 3.11
2023 4055 6.152379 GGCACCTCACTTAAAAAGATGAAAG 58.848 40.000 0.00 0.00 0.00 2.62
2024 4056 5.596361 TGGCACCTCACTTAAAAAGATGAAA 59.404 36.000 0.00 0.00 0.00 2.69
2026 4058 4.518970 GTGGCACCTCACTTAAAAAGATGA 59.481 41.667 6.29 0.00 34.98 2.92
2027 4059 4.278170 TGTGGCACCTCACTTAAAAAGATG 59.722 41.667 16.26 0.00 38.40 2.90
2028 4060 4.469657 TGTGGCACCTCACTTAAAAAGAT 58.530 39.130 16.26 0.00 38.40 2.40
2029 4061 3.892284 TGTGGCACCTCACTTAAAAAGA 58.108 40.909 16.26 0.00 38.40 2.52
2030 4062 4.037923 ACATGTGGCACCTCACTTAAAAAG 59.962 41.667 16.26 0.00 38.40 2.27
2031 4063 3.957497 ACATGTGGCACCTCACTTAAAAA 59.043 39.130 16.26 0.00 38.40 1.94
2032 4064 3.317711 CACATGTGGCACCTCACTTAAAA 59.682 43.478 18.51 0.00 38.40 1.52
2033 4065 2.884012 CACATGTGGCACCTCACTTAAA 59.116 45.455 18.51 0.00 38.40 1.52
2034 4066 2.158682 ACACATGTGGCACCTCACTTAA 60.159 45.455 28.64 0.00 38.40 1.85
2036 4068 0.183492 ACACATGTGGCACCTCACTT 59.817 50.000 28.64 1.52 38.40 3.16
2037 4069 0.535780 CACACATGTGGCACCTCACT 60.536 55.000 28.64 2.30 42.10 3.41
2038 4070 1.951510 CACACATGTGGCACCTCAC 59.048 57.895 28.64 0.00 42.10 3.51
2039 4071 4.479303 CACACATGTGGCACCTCA 57.521 55.556 28.64 0.00 42.10 3.86
2047 4079 4.691175 TGGATTTTTGTTCCACACATGTG 58.309 39.130 24.25 24.25 45.23 3.21
2048 4080 5.299148 CATGGATTTTTGTTCCACACATGT 58.701 37.500 0.00 0.00 45.71 3.21
2049 4081 4.691685 CCATGGATTTTTGTTCCACACATG 59.308 41.667 5.56 0.00 45.71 3.21
2051 4083 3.494048 GCCATGGATTTTTGTTCCACACA 60.494 43.478 18.40 0.00 45.71 3.72
2053 4085 2.288702 CGCCATGGATTTTTGTTCCACA 60.289 45.455 18.40 0.00 45.71 4.17
2055 4087 2.242926 TCGCCATGGATTTTTGTTCCA 58.757 42.857 18.40 0.00 46.86 3.53
2056 4088 3.311486 TTCGCCATGGATTTTTGTTCC 57.689 42.857 18.40 0.00 0.00 3.62
2057 4089 7.382218 CCTATAATTCGCCATGGATTTTTGTTC 59.618 37.037 18.40 0.00 0.00 3.18
2058 4090 7.209475 CCTATAATTCGCCATGGATTTTTGTT 58.791 34.615 18.40 2.79 0.00 2.83
2059 4091 6.738453 GCCTATAATTCGCCATGGATTTTTGT 60.738 38.462 18.40 4.30 0.00 2.83
2060 4092 5.634859 GCCTATAATTCGCCATGGATTTTTG 59.365 40.000 18.40 3.10 0.00 2.44
2061 4093 5.304101 TGCCTATAATTCGCCATGGATTTTT 59.696 36.000 18.40 5.80 0.00 1.94
2093 4125 4.155099 TCGATCTGCAAATTTAAGCCGAAA 59.845 37.500 0.00 0.00 0.00 3.46
2097 4129 6.017933 CGATATCGATCTGCAAATTTAAGCC 58.982 40.000 20.50 0.00 43.02 4.35
2114 4146 9.852091 AATATGGATGTATGATCATCGATATCG 57.148 33.333 19.14 19.14 45.85 2.92
2132 4164 4.719026 ACATGGCAGTCAGAATATGGAT 57.281 40.909 0.00 0.00 0.00 3.41
2134 4166 3.249320 CGAACATGGCAGTCAGAATATGG 59.751 47.826 0.00 0.00 0.00 2.74
2135 4167 3.873361 ACGAACATGGCAGTCAGAATATG 59.127 43.478 0.00 0.00 0.00 1.78
2136 4168 4.142609 ACGAACATGGCAGTCAGAATAT 57.857 40.909 0.00 0.00 0.00 1.28
2137 4169 3.610040 ACGAACATGGCAGTCAGAATA 57.390 42.857 0.00 0.00 0.00 1.75
2138 4170 2.479566 ACGAACATGGCAGTCAGAAT 57.520 45.000 0.00 0.00 0.00 2.40
2256 4288 8.853345 CATTCTTTTCCAACAAATGAGATAACG 58.147 33.333 0.00 0.00 30.64 3.18
2275 4307 5.280654 ACTGTTTTGTCCATGCATTCTTT 57.719 34.783 0.00 0.00 0.00 2.52
2283 4315 2.865551 GCCAACAACTGTTTTGTCCATG 59.134 45.455 11.62 0.00 35.83 3.66
2355 4387 1.300311 CTGGCGTGGACACAACGTA 60.300 57.895 3.12 0.00 0.00 3.57
2356 4388 2.587753 CTGGCGTGGACACAACGT 60.588 61.111 3.12 0.00 0.00 3.99
2357 4389 4.012895 GCTGGCGTGGACACAACG 62.013 66.667 3.12 0.00 0.00 4.10
2358 4390 1.999071 TTTGCTGGCGTGGACACAAC 61.999 55.000 3.12 0.00 0.00 3.32
2360 4392 0.250510 TATTTGCTGGCGTGGACACA 60.251 50.000 3.12 0.00 0.00 3.72
2361 4393 0.447801 CTATTTGCTGGCGTGGACAC 59.552 55.000 0.00 0.00 0.00 3.67
2362 4394 0.676466 CCTATTTGCTGGCGTGGACA 60.676 55.000 0.00 0.00 0.00 4.02
2363 4395 1.993369 GCCTATTTGCTGGCGTGGAC 61.993 60.000 0.00 0.00 39.71 4.02
2526 4562 4.748102 GGTGCTTCCAAATTATCATGCATG 59.252 41.667 21.07 21.07 35.97 4.06
2569 4605 3.871594 CGGGCTTCATAGAAAGTCGAAAT 59.128 43.478 0.00 0.00 31.48 2.17
2579 4615 4.643463 TGTAACAAAACGGGCTTCATAGA 58.357 39.130 0.00 0.00 0.00 1.98
2652 4688 1.873591 AGGTCAAACAGATGTTCGTGC 59.126 47.619 0.00 0.00 37.25 5.34
2713 4749 2.431057 AGCCTTCACCTGATTACCTACG 59.569 50.000 0.00 0.00 0.00 3.51
2767 4803 5.523369 TCGATATACTGAGCATGAAGTGTG 58.477 41.667 0.00 0.00 0.00 3.82
2775 4811 3.441922 AGCGACATCGATATACTGAGCAT 59.558 43.478 5.26 0.00 43.02 3.79
2835 4873 6.478512 ACTGTCAAAAAGGCCAAAGATAAA 57.521 33.333 5.01 0.00 0.00 1.40
2950 5013 9.456147 ACACACAACCATAGTAGCATTTATTAA 57.544 29.630 0.00 0.00 0.00 1.40
3079 5142 1.054231 TATCAGCTGGCTCCTCCATG 58.946 55.000 15.13 0.00 45.50 3.66
3125 5188 7.801547 AGATTCGTGCAATTGAAAGTTTATG 57.198 32.000 10.34 0.00 0.00 1.90
3127 5190 7.421599 TGAAGATTCGTGCAATTGAAAGTTTA 58.578 30.769 10.34 0.00 0.00 2.01
3153 5216 8.726988 CCACGTATCTTCTTCCAAAATAAGAAA 58.273 33.333 0.00 0.00 41.21 2.52
3175 5238 0.943673 TTGTGTGAATCTGTGCCACG 59.056 50.000 0.00 0.00 33.78 4.94
3265 5328 6.415573 AGGGAGTATGTTTTAAGTGGATGAC 58.584 40.000 0.00 0.00 0.00 3.06
3368 5432 9.359653 CAAATAATTTTCAGATACTCCCTCCAT 57.640 33.333 0.00 0.00 0.00 3.41
3369 5433 7.779798 CCAAATAATTTTCAGATACTCCCTCCA 59.220 37.037 0.00 0.00 0.00 3.86
3400 5464 7.817418 TGAAAAACTGATTATATACCAGCCC 57.183 36.000 9.93 0.17 0.00 5.19
3410 5474 6.429692 TGTGACACGGATGAAAAACTGATTAT 59.570 34.615 0.22 0.00 0.00 1.28
3450 5515 6.996509 ACAACAAATCACATCTTAGCCAAAT 58.003 32.000 0.00 0.00 0.00 2.32
3451 5516 6.403866 ACAACAAATCACATCTTAGCCAAA 57.596 33.333 0.00 0.00 0.00 3.28
3666 5732 4.161377 TCACGAATGATATGTTCCCAGACA 59.839 41.667 0.00 0.00 0.00 3.41
3794 5860 1.337823 TGTCGGCCTCACTAAGAAAGC 60.338 52.381 0.00 0.00 0.00 3.51
3795 5861 2.743636 TGTCGGCCTCACTAAGAAAG 57.256 50.000 0.00 0.00 0.00 2.62
3904 5970 1.002868 CACTGGAAGCAGAGGTGGG 60.003 63.158 0.00 0.00 37.60 4.61
3939 6005 4.564406 GGAAGCATCTTCCTGAAGTCTTCA 60.564 45.833 23.41 14.54 39.27 3.02
3951 6017 7.766278 TGAGAAGTATTTACTGGAAGCATCTTC 59.234 37.037 0.00 0.00 37.60 2.87
4010 6076 4.402474 TGCTCGGTTCTTTCAGATGAGATA 59.598 41.667 0.00 0.00 0.00 1.98
4015 6081 2.160417 GGTTGCTCGGTTCTTTCAGATG 59.840 50.000 0.00 0.00 0.00 2.90
4045 6111 2.647299 TCATTCCAGGCCTTTCCAAGTA 59.353 45.455 0.00 0.00 37.29 2.24
4080 6146 4.831155 AGATGAACCTGCATATCCAATTGG 59.169 41.667 19.08 19.08 0.00 3.16
4161 6227 9.481340 CCATTAGAATTCTCATGTCTCGATTTA 57.519 33.333 22.23 0.00 0.00 1.40
4338 6404 7.604164 ACACCTACAGTTGATACTCTCAAATTG 59.396 37.037 0.00 0.00 45.27 2.32
4425 6491 7.745015 AGTACAAATCAATGCAAAATGAATGC 58.255 30.769 0.00 0.00 44.08 3.56
4477 6543 5.748402 ACTGATATGAGATGACAAGGCAAA 58.252 37.500 0.00 0.00 0.00 3.68
4578 6644 4.019501 ACTGATATTGATCCCTGGAGCATC 60.020 45.833 4.77 0.98 40.37 3.91
4720 6786 7.934120 GCTGACTCTATGAACTGGGTTAAATAT 59.066 37.037 0.00 0.00 0.00 1.28
4781 6847 2.791383 TTCAGGCGACACAAATTTGG 57.209 45.000 21.74 12.94 0.00 3.28
5168 7234 0.107945 ATGCAGGTCTTCTTCTCGCC 60.108 55.000 0.00 0.00 0.00 5.54
5338 7434 3.491267 GTGATCCGAAAGATTAAGCTCCG 59.509 47.826 0.00 1.06 34.42 4.63
5385 7481 2.817844 GGCATAAAACTTCAACCTCGGT 59.182 45.455 0.00 0.00 0.00 4.69
5450 7546 3.118992 TCTCCAAGAACAGATGGTCATCG 60.119 47.826 0.00 3.98 42.48 3.84
5456 7552 4.750021 TCATCTCTCCAAGAACAGATGG 57.250 45.455 7.70 0.00 37.61 3.51
5465 7561 3.672808 ACAAGTGCTTCATCTCTCCAAG 58.327 45.455 0.00 0.00 0.00 3.61
5515 7611 2.033049 CCTTGAGCTATGAACTGCATGC 59.967 50.000 11.82 11.82 37.87 4.06
5526 7622 1.450531 GCCATTGCGCCTTGAGCTAT 61.451 55.000 4.18 0.00 40.39 2.97
5594 7691 2.109128 TCAAACTGCCACCCCTATTTGA 59.891 45.455 0.00 0.00 34.57 2.69
5597 7694 2.738743 CATCAAACTGCCACCCCTATT 58.261 47.619 0.00 0.00 0.00 1.73
5634 7731 1.326548 GTCGGAAACACACACTCACAC 59.673 52.381 0.00 0.00 0.00 3.82
5772 7869 4.897025 AGAACGGTACCTCGATAAAGAG 57.103 45.455 10.90 0.00 37.97 2.85
5869 7996 7.220108 GTCGGATTTGGTTGTATATTGCTTTTC 59.780 37.037 0.00 0.00 0.00 2.29
5875 8002 7.315247 TCAAGTCGGATTTGGTTGTATATTG 57.685 36.000 12.51 0.00 0.00 1.90
5877 8004 7.392113 TGTTTCAAGTCGGATTTGGTTGTATAT 59.608 33.333 12.51 0.00 0.00 0.86
5879 8006 5.533154 TGTTTCAAGTCGGATTTGGTTGTAT 59.467 36.000 12.51 0.00 0.00 2.29
5880 8007 4.882427 TGTTTCAAGTCGGATTTGGTTGTA 59.118 37.500 12.51 0.00 0.00 2.41
5882 8009 4.300189 TGTTTCAAGTCGGATTTGGTTG 57.700 40.909 12.51 0.00 0.00 3.77
5884 8011 5.768164 AGTAATGTTTCAAGTCGGATTTGGT 59.232 36.000 12.51 0.00 0.00 3.67
5886 8013 6.582295 CCAAGTAATGTTTCAAGTCGGATTTG 59.418 38.462 6.89 6.89 0.00 2.32
5887 8014 6.264518 ACCAAGTAATGTTTCAAGTCGGATTT 59.735 34.615 0.00 0.00 0.00 2.17
5889 8016 5.181245 CACCAAGTAATGTTTCAAGTCGGAT 59.819 40.000 0.00 0.00 0.00 4.18
5890 8017 4.513692 CACCAAGTAATGTTTCAAGTCGGA 59.486 41.667 0.00 0.00 0.00 4.55
5891 8018 4.513692 TCACCAAGTAATGTTTCAAGTCGG 59.486 41.667 0.00 0.00 0.00 4.79
5892 8019 5.666969 TCACCAAGTAATGTTTCAAGTCG 57.333 39.130 0.00 0.00 0.00 4.18
5893 8020 5.915196 GCTTCACCAAGTAATGTTTCAAGTC 59.085 40.000 0.00 0.00 31.45 3.01
5894 8021 5.594317 AGCTTCACCAAGTAATGTTTCAAGT 59.406 36.000 0.00 0.00 31.45 3.16
5895 8022 5.916883 CAGCTTCACCAAGTAATGTTTCAAG 59.083 40.000 0.00 0.00 31.45 3.02
5896 8023 5.221224 CCAGCTTCACCAAGTAATGTTTCAA 60.221 40.000 0.00 0.00 31.45 2.69
5897 8024 4.278170 CCAGCTTCACCAAGTAATGTTTCA 59.722 41.667 0.00 0.00 31.45 2.69
5898 8025 4.518970 TCCAGCTTCACCAAGTAATGTTTC 59.481 41.667 0.00 0.00 31.45 2.78
5899 8026 4.469657 TCCAGCTTCACCAAGTAATGTTT 58.530 39.130 0.00 0.00 31.45 2.83
5900 8027 4.098914 TCCAGCTTCACCAAGTAATGTT 57.901 40.909 0.00 0.00 31.45 2.71
5901 8028 3.788227 TCCAGCTTCACCAAGTAATGT 57.212 42.857 0.00 0.00 31.45 2.71
5902 8029 5.649782 AATTCCAGCTTCACCAAGTAATG 57.350 39.130 0.00 0.00 31.45 1.90
5903 8030 5.185828 GGAAATTCCAGCTTCACCAAGTAAT 59.814 40.000 7.23 0.00 36.28 1.89
5904 8031 4.522789 GGAAATTCCAGCTTCACCAAGTAA 59.477 41.667 7.23 0.00 36.28 2.24
5905 8032 4.079253 GGAAATTCCAGCTTCACCAAGTA 58.921 43.478 7.23 0.00 36.28 2.24
5906 8033 2.893489 GGAAATTCCAGCTTCACCAAGT 59.107 45.455 7.23 0.00 36.28 3.16
5907 8034 3.057033 CAGGAAATTCCAGCTTCACCAAG 60.057 47.826 15.21 0.00 39.61 3.61
5912 8039 3.744940 ATCCAGGAAATTCCAGCTTCA 57.255 42.857 15.21 0.00 39.61 3.02
5920 8047 9.962783 CTTCTGAATATTCAATCCAGGAAATTC 57.037 33.333 18.47 0.00 36.64 2.17
5936 8063 8.554528 CGAATGTAACAAGATGCTTCTGAATAT 58.445 33.333 2.39 0.00 30.72 1.28
5937 8064 7.763985 TCGAATGTAACAAGATGCTTCTGAATA 59.236 33.333 2.39 0.00 30.72 1.75
5958 8085 1.339151 GCCCTGGACTCAAGTTCGAAT 60.339 52.381 0.00 0.00 0.00 3.34
5972 8099 2.086869 CTTACTGAACATGTGCCCTGG 58.913 52.381 0.00 0.00 0.00 4.45
6013 8143 7.948357 CATTGGATCAATGTGGTCTGAAATAT 58.052 34.615 11.28 0.00 44.12 1.28
6040 8170 2.490115 TGCAGTTTTCACCGAGTTTGTT 59.510 40.909 0.00 0.00 0.00 2.83
6076 8206 8.084684 AGAGTGATGATTTTGTTTTCTTTAGGC 58.915 33.333 0.00 0.00 0.00 3.93
6124 8256 7.131907 TGCATAGGTTCTGCTAATTAGGTTA 57.868 36.000 14.28 0.00 40.34 2.85
6128 8260 5.523916 ACGTTGCATAGGTTCTGCTAATTAG 59.476 40.000 8.20 8.20 40.34 1.73
6151 8283 6.764560 TGAGTTCTAACACTTTAAACCCTCAC 59.235 38.462 0.00 0.00 0.00 3.51
6153 8285 7.660208 TCATGAGTTCTAACACTTTAAACCCTC 59.340 37.037 0.00 0.00 0.00 4.30
6161 8293 4.757149 GCTGGTCATGAGTTCTAACACTTT 59.243 41.667 0.00 0.00 0.00 2.66
6216 8348 2.772191 ACAGGGGACACAGCCACA 60.772 61.111 0.00 0.00 32.19 4.17
6223 8355 3.069586 TCATCGATATTCACAGGGGACAC 59.930 47.826 0.00 0.00 0.00 3.67
6238 8370 8.579863 ACTTCCATTCTTTTCTTTTTCATCGAT 58.420 29.630 0.00 0.00 0.00 3.59
6246 8378 8.712228 ATCCAGTACTTCCATTCTTTTCTTTT 57.288 30.769 0.00 0.00 0.00 2.27
6249 8381 8.772250 TGATATCCAGTACTTCCATTCTTTTCT 58.228 33.333 0.00 0.00 0.00 2.52
6250 8382 8.964476 TGATATCCAGTACTTCCATTCTTTTC 57.036 34.615 0.00 0.00 0.00 2.29
6273 8405 8.326529 GGGGCCTTAAAGCTAGTAATATTATGA 58.673 37.037 0.84 0.00 0.00 2.15
6314 8446 2.928116 GTGTAACTTACTGATCACCGCC 59.072 50.000 0.00 0.00 0.00 6.13
6315 8447 3.581755 TGTGTAACTTACTGATCACCGC 58.418 45.455 0.00 0.00 38.04 5.68
6316 8448 6.367695 TCAAATGTGTAACTTACTGATCACCG 59.632 38.462 0.00 0.00 38.04 4.94
6317 8449 7.172532 TGTCAAATGTGTAACTTACTGATCACC 59.827 37.037 0.00 0.00 38.04 4.02
6318 8450 8.083462 TGTCAAATGTGTAACTTACTGATCAC 57.917 34.615 0.00 0.00 38.04 3.06
6319 8451 8.669946 TTGTCAAATGTGTAACTTACTGATCA 57.330 30.769 0.00 0.00 38.04 2.92
6321 8453 9.897744 CAATTGTCAAATGTGTAACTTACTGAT 57.102 29.630 0.00 0.00 38.04 2.90
6322 8454 9.114952 TCAATTGTCAAATGTGTAACTTACTGA 57.885 29.630 5.13 0.00 38.04 3.41
6323 8455 9.897744 ATCAATTGTCAAATGTGTAACTTACTG 57.102 29.630 5.13 0.00 38.04 2.74
6353 8485 5.763204 ACGGATGTCAAATGAGTAAAACTGT 59.237 36.000 0.00 0.00 0.00 3.55
6356 8488 5.342259 GCAACGGATGTCAAATGAGTAAAAC 59.658 40.000 0.00 0.00 0.00 2.43
6386 8518 6.997655 TGTCCGATGCTAGATAGATGAATTT 58.002 36.000 0.00 0.00 0.00 1.82
6441 8575 7.924103 ATACCTTTGTTGTTTTTCTTAAGCG 57.076 32.000 0.00 0.00 0.00 4.68
6451 8589 9.665719 ATTGTTTCTCAAATACCTTTGTTGTTT 57.334 25.926 0.00 0.00 42.02 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.