Multiple sequence alignment - TraesCS1D01G361400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G361400 chr1D 100.000 2660 0 0 930 3589 444152483 444149824 0.000000e+00 4913.0
1 TraesCS1D01G361400 chr1D 100.000 586 0 0 1 586 444153412 444152827 0.000000e+00 1083.0
2 TraesCS1D01G361400 chr1D 98.438 64 1 0 1115 1178 292665300 292665237 2.930000e-21 113.0
3 TraesCS1D01G361400 chr1A 97.008 2373 55 8 930 3297 539901797 539899436 0.000000e+00 3975.0
4 TraesCS1D01G361400 chr1A 89.121 478 18 13 130 586 539902257 539901793 6.730000e-157 564.0
5 TraesCS1D01G361400 chr1B 92.623 2657 148 28 930 3565 604148074 604145445 0.000000e+00 3777.0
6 TraesCS1D01G361400 chr1B 92.535 576 30 9 2996 3565 603769583 603769015 0.000000e+00 813.0
7 TraesCS1D01G361400 chr1B 86.700 406 17 15 200 586 604148457 604148070 1.990000e-112 416.0
8 TraesCS1D01G361400 chr1B 81.818 231 18 6 1 210 604149734 604149507 4.760000e-39 172.0
9 TraesCS1D01G361400 chr7D 98.507 67 1 0 1112 1178 308588225 308588291 6.290000e-23 119.0
10 TraesCS1D01G361400 chr2D 92.683 82 3 1 1097 1178 260026061 260025983 8.140000e-22 115.0
11 TraesCS1D01G361400 chr2D 88.406 69 1 1 1111 1179 157119603 157119664 3.840000e-10 76.8
12 TraesCS1D01G361400 chr2D 100.000 36 0 0 1115 1150 62399216 62399181 2.310000e-07 67.6
13 TraesCS1D01G361400 chr3D 85.149 101 10 5 1081 1178 17590942 17590844 8.200000e-17 99.0
14 TraesCS1D01G361400 chr6D 100.000 31 0 0 1112 1142 126834778 126834748 1.390000e-04 58.4
15 TraesCS1D01G361400 chr6D 100.000 31 0 0 1118 1148 277127194 277127164 1.390000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G361400 chr1D 444149824 444153412 3588 True 2998.0 4913 100.0000 1 3589 2 chr1D.!!$R2 3588
1 TraesCS1D01G361400 chr1A 539899436 539902257 2821 True 2269.5 3975 93.0645 130 3297 2 chr1A.!!$R1 3167
2 TraesCS1D01G361400 chr1B 604145445 604149734 4289 True 1455.0 3777 87.0470 1 3565 3 chr1B.!!$R2 3564
3 TraesCS1D01G361400 chr1B 603769015 603769583 568 True 813.0 813 92.5350 2996 3565 1 chr1B.!!$R1 569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 1462 0.108585 GACACACCTCTTGGAAGGCA 59.891 55.000 0.00 0.0 40.34 4.75 F
359 1463 0.109342 ACACACCTCTTGGAAGGCAG 59.891 55.000 0.00 0.0 40.34 4.85 F
360 1464 1.073897 ACACCTCTTGGAAGGCAGC 59.926 57.895 0.00 0.0 40.34 5.25 F
1602 2735 1.074775 TGTTGGCGGCCTCTCAAAT 59.925 52.632 21.46 0.0 0.00 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1590 2723 0.175760 TCTCCGAATTTGAGAGGCCG 59.824 55.0 0.0 0.0 34.03 6.13 R
2406 3539 1.075601 TCATTCACTTGCCCTCCCTT 58.924 50.0 0.0 0.0 0.00 3.95 R
2475 3608 0.530744 CGAAGAGACATCACCCCGAA 59.469 55.0 0.0 0.0 0.00 4.30 R
3509 4668 2.229675 TCGCCACAGCATCAGATAAG 57.770 50.0 0.0 0.0 39.83 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.606401 AATCCACAGGCTTGTCGGTG 60.606 55.000 14.12 0.00 34.62 4.94
26 27 1.072331 ACAGGCTTGTCGGTGAAGATT 59.928 47.619 0.00 0.00 29.46 2.40
27 28 1.466167 CAGGCTTGTCGGTGAAGATTG 59.534 52.381 0.00 0.00 0.00 2.67
34 35 2.493675 TGTCGGTGAAGATTGAGAGGAG 59.506 50.000 0.00 0.00 0.00 3.69
39 40 3.530535 GTGAAGATTGAGAGGAGGAAGC 58.469 50.000 0.00 0.00 0.00 3.86
58 59 2.173569 AGCTTTTCCTCAGTCACCTTGT 59.826 45.455 0.00 0.00 0.00 3.16
78 79 2.554462 GTGAGAGGGAAAGAAAAGCACC 59.446 50.000 0.00 0.00 0.00 5.01
80 81 3.117512 TGAGAGGGAAAGAAAAGCACCTT 60.118 43.478 0.00 0.00 0.00 3.50
87 88 5.225642 GGAAAGAAAAGCACCTTTGATCTG 58.774 41.667 0.00 0.00 33.64 2.90
94 95 6.899393 AAAGCACCTTTGATCTGATTTGTA 57.101 33.333 0.00 0.00 31.98 2.41
124 125 3.099905 TCTCCTCATCAATCGGTCAACT 58.900 45.455 0.00 0.00 0.00 3.16
126 127 1.667724 CCTCATCAATCGGTCAACTGC 59.332 52.381 0.00 0.00 0.00 4.40
127 128 2.349590 CTCATCAATCGGTCAACTGCA 58.650 47.619 0.00 0.00 0.00 4.41
137 158 2.032030 CGGTCAACTGCATCGAAAAACT 60.032 45.455 0.00 0.00 0.00 2.66
213 1293 8.961634 GTTTTAGAGGAGAAAAATAGAGGCAAT 58.038 33.333 0.00 0.00 0.00 3.56
215 1295 6.319048 AGAGGAGAAAAATAGAGGCAATGA 57.681 37.500 0.00 0.00 0.00 2.57
244 1324 1.949525 GCAAAGTGCAGTCTCTTCCAA 59.050 47.619 0.00 0.00 44.26 3.53
248 1334 5.594926 CAAAGTGCAGTCTCTTCCAATTTT 58.405 37.500 0.00 0.00 0.00 1.82
249 1335 5.859205 AAGTGCAGTCTCTTCCAATTTTT 57.141 34.783 0.00 0.00 0.00 1.94
273 1359 1.148949 TGCCTGTCTCTGCTGCAAA 59.851 52.632 3.02 0.00 0.00 3.68
314 1404 2.766400 GGACTCGTCGAGGAGGCAG 61.766 68.421 34.81 15.28 44.24 4.85
358 1462 0.108585 GACACACCTCTTGGAAGGCA 59.891 55.000 0.00 0.00 40.34 4.75
359 1463 0.109342 ACACACCTCTTGGAAGGCAG 59.891 55.000 0.00 0.00 40.34 4.85
360 1464 1.073897 ACACCTCTTGGAAGGCAGC 59.926 57.895 0.00 0.00 40.34 5.25
361 1465 1.676967 CACCTCTTGGAAGGCAGCC 60.677 63.158 1.84 1.84 40.34 4.85
362 1466 2.044551 CCTCTTGGAAGGCAGCCC 60.045 66.667 8.22 0.00 34.57 5.19
363 1467 2.437359 CTCTTGGAAGGCAGCCCG 60.437 66.667 8.22 0.00 35.76 6.13
364 1468 3.984193 CTCTTGGAAGGCAGCCCGG 62.984 68.421 8.22 0.00 35.76 5.73
533 1648 2.997315 TCAGCCTCACCCTCACCG 60.997 66.667 0.00 0.00 0.00 4.94
534 1649 4.767255 CAGCCTCACCCTCACCGC 62.767 72.222 0.00 0.00 0.00 5.68
1590 2723 3.660111 GTGCTCCACCGTGTTGGC 61.660 66.667 0.00 0.00 43.94 4.52
1602 2735 1.074775 TGTTGGCGGCCTCTCAAAT 59.925 52.632 21.46 0.00 0.00 2.32
2406 3539 1.591703 CGAGTGGACTAAGCTGGCA 59.408 57.895 0.00 0.00 0.00 4.92
2645 3781 6.388619 AGATACACCCAGTTTTATCCACTT 57.611 37.500 0.00 0.00 0.00 3.16
2676 3813 1.199097 AGCAACGGTTTTAATGCCTCG 59.801 47.619 0.00 0.00 39.59 4.63
2694 3831 1.606885 CGCATCCCAATGTTGCCCTT 61.607 55.000 0.00 0.00 36.51 3.95
2708 3845 1.879380 TGCCCTTGAAGTGTGATTTCG 59.121 47.619 0.00 0.00 0.00 3.46
2730 3867 7.956420 TCGAATATGTCAATATGGTGGTAAC 57.044 36.000 0.00 0.00 0.00 2.50
2731 3868 7.732025 TCGAATATGTCAATATGGTGGTAACT 58.268 34.615 0.00 0.00 37.61 2.24
2732 3869 7.655732 TCGAATATGTCAATATGGTGGTAACTG 59.344 37.037 0.00 0.00 37.61 3.16
2733 3870 7.095229 CGAATATGTCAATATGGTGGTAACTGG 60.095 40.741 0.00 0.00 37.61 4.00
2734 3871 4.919774 TGTCAATATGGTGGTAACTGGT 57.080 40.909 0.00 0.00 37.61 4.00
2799 3936 1.476488 GGTTGTTCAGTGTTGCAAGGT 59.524 47.619 0.00 0.00 0.00 3.50
2800 3937 2.685897 GGTTGTTCAGTGTTGCAAGGTA 59.314 45.455 0.00 0.00 0.00 3.08
2801 3938 3.243068 GGTTGTTCAGTGTTGCAAGGTAG 60.243 47.826 0.00 0.00 0.00 3.18
2829 3966 0.815213 TTCACCTGCTGTGCTGTCAC 60.815 55.000 2.50 0.00 45.03 3.67
2858 4002 2.080654 GGAGCTATCTCTGGTCCTGT 57.919 55.000 4.91 0.00 45.56 4.00
2886 4030 0.916086 TCATCTTGTTATGGGCGGGT 59.084 50.000 0.00 0.00 0.00 5.28
2903 4047 2.027285 CGGGTCCATGCCATATGACATA 60.027 50.000 4.02 0.00 0.00 2.29
2992 4144 3.428589 GGCCTGCTCATTCTCAATGAAAC 60.429 47.826 0.00 0.00 46.49 2.78
2994 4146 3.423571 CTGCTCATTCTCAATGAAACGC 58.576 45.455 0.83 2.20 46.49 4.84
3063 4218 8.659925 TGATTGTTCTTTTGTTATTGTTGCAT 57.340 26.923 0.00 0.00 0.00 3.96
3161 4317 6.538742 CAGTACTTCTCTTCAACTGGTCAAAA 59.461 38.462 0.00 0.00 35.12 2.44
3162 4318 5.819825 ACTTCTCTTCAACTGGTCAAAAC 57.180 39.130 0.00 0.00 0.00 2.43
3163 4319 5.501156 ACTTCTCTTCAACTGGTCAAAACT 58.499 37.500 0.00 0.00 0.00 2.66
3164 4320 5.586643 ACTTCTCTTCAACTGGTCAAAACTC 59.413 40.000 0.00 0.00 0.00 3.01
3165 4321 5.097742 TCTCTTCAACTGGTCAAAACTCA 57.902 39.130 0.00 0.00 0.00 3.41
3390 4549 4.873259 GTGAGTTATTCCTCCTCAAAGAGC 59.127 45.833 0.00 0.00 37.01 4.09
3406 4565 3.051081 AGAGCACATCTTGAACTGGTC 57.949 47.619 0.00 0.00 32.99 4.02
3407 4566 2.369860 AGAGCACATCTTGAACTGGTCA 59.630 45.455 0.00 0.00 32.99 4.02
3411 4570 4.037208 AGCACATCTTGAACTGGTCAAAAG 59.963 41.667 9.72 4.95 45.67 2.27
3412 4571 4.036734 GCACATCTTGAACTGGTCAAAAGA 59.963 41.667 9.72 4.59 45.67 2.52
3413 4572 5.514279 CACATCTTGAACTGGTCAAAAGAC 58.486 41.667 9.72 0.00 45.67 3.01
3443 4602 1.198408 CTTGTCGACGGTAGTACAGCA 59.802 52.381 11.62 0.00 0.00 4.41
3447 4606 1.814394 TCGACGGTAGTACAGCAATGT 59.186 47.619 2.06 0.00 0.00 2.71
3448 4607 3.009026 TCGACGGTAGTACAGCAATGTA 58.991 45.455 2.06 0.00 0.00 2.29
3449 4608 3.103738 CGACGGTAGTACAGCAATGTAC 58.896 50.000 9.92 9.92 43.52 2.90
3504 4663 7.010023 GCAGTATGTATGCGCTAAATTTAGTC 58.990 38.462 22.94 16.27 39.31 2.59
3509 4668 3.757745 TGCGCTAAATTTAGTCCTTGC 57.242 42.857 22.94 18.51 33.32 4.01
3547 4707 3.815401 GCGAATACTTGTATGAATGCCCT 59.185 43.478 0.00 0.00 0.00 5.19
3556 4716 3.525609 TGTATGAATGCCCTTGTCCCTTA 59.474 43.478 0.00 0.00 0.00 2.69
3560 4720 3.768757 TGAATGCCCTTGTCCCTTATTTG 59.231 43.478 0.00 0.00 0.00 2.32
3563 4723 3.582164 TGCCCTTGTCCCTTATTTGTTT 58.418 40.909 0.00 0.00 0.00 2.83
3564 4724 3.323403 TGCCCTTGTCCCTTATTTGTTTG 59.677 43.478 0.00 0.00 0.00 2.93
3565 4725 3.864540 GCCCTTGTCCCTTATTTGTTTGC 60.865 47.826 0.00 0.00 0.00 3.68
3566 4726 3.323403 CCCTTGTCCCTTATTTGTTTGCA 59.677 43.478 0.00 0.00 0.00 4.08
3567 4727 4.020307 CCCTTGTCCCTTATTTGTTTGCAT 60.020 41.667 0.00 0.00 0.00 3.96
3568 4728 5.512921 CCCTTGTCCCTTATTTGTTTGCATT 60.513 40.000 0.00 0.00 0.00 3.56
3569 4729 5.997129 CCTTGTCCCTTATTTGTTTGCATTT 59.003 36.000 0.00 0.00 0.00 2.32
3570 4730 6.073112 CCTTGTCCCTTATTTGTTTGCATTTG 60.073 38.462 0.00 0.00 0.00 2.32
3571 4731 5.303971 TGTCCCTTATTTGTTTGCATTTGG 58.696 37.500 0.00 0.00 0.00 3.28
3572 4732 5.070981 TGTCCCTTATTTGTTTGCATTTGGA 59.929 36.000 0.00 0.00 0.00 3.53
3573 4733 6.172630 GTCCCTTATTTGTTTGCATTTGGAT 58.827 36.000 0.00 0.00 0.00 3.41
3574 4734 6.092533 GTCCCTTATTTGTTTGCATTTGGATG 59.907 38.462 0.00 0.00 36.32 3.51
3588 4748 5.828747 CATTTGGATGCTAGTGAAATCTGG 58.171 41.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.493675 CTCCTCTCAATCTTCACCGACA 59.506 50.000 0.00 0.00 0.00 4.35
14 15 2.159170 CCTCCTCTCAATCTTCACCGAC 60.159 54.545 0.00 0.00 0.00 4.79
20 21 4.486125 AAGCTTCCTCCTCTCAATCTTC 57.514 45.455 0.00 0.00 0.00 2.87
34 35 2.224646 AGGTGACTGAGGAAAAGCTTCC 60.225 50.000 0.00 0.00 45.80 3.46
39 40 3.808728 TCACAAGGTGACTGAGGAAAAG 58.191 45.455 0.00 0.00 42.68 2.27
47 48 1.342074 TCCCTCTCACAAGGTGACTG 58.658 55.000 0.00 0.00 42.68 3.51
58 59 2.443255 AGGTGCTTTTCTTTCCCTCTCA 59.557 45.455 0.00 0.00 0.00 3.27
102 103 3.708631 AGTTGACCGATTGATGAGGAGAT 59.291 43.478 0.00 0.00 0.00 2.75
113 114 2.093306 TTCGATGCAGTTGACCGATT 57.907 45.000 0.00 0.00 0.00 3.34
165 186 6.391227 ACTTAACTTCATGTTTCACCCTTG 57.609 37.500 0.00 0.00 39.89 3.61
248 1334 1.699634 AGCAGAGACAGGCACCTTAAA 59.300 47.619 0.00 0.00 0.00 1.52
249 1335 1.002430 CAGCAGAGACAGGCACCTTAA 59.998 52.381 0.00 0.00 0.00 1.85
257 1343 0.250640 AGGTTTGCAGCAGAGACAGG 60.251 55.000 0.00 0.00 0.00 4.00
258 1344 0.873054 CAGGTTTGCAGCAGAGACAG 59.127 55.000 0.00 0.00 0.00 3.51
273 1359 4.039357 CCTCGTGACGACGCAGGT 62.039 66.667 2.39 0.00 45.68 4.00
319 1413 3.869473 TTTTCGACCCTCACCCGCG 62.869 63.158 0.00 0.00 0.00 6.46
321 1415 3.961729 GTTTTCGACCCTCACCCG 58.038 61.111 0.00 0.00 0.00 5.28
358 1462 4.021925 GTCACAAGGAGCCGGGCT 62.022 66.667 24.13 24.13 43.88 5.19
360 1464 4.760047 CGGTCACAAGGAGCCGGG 62.760 72.222 2.18 0.00 40.99 5.73
361 1465 3.530910 AACGGTCACAAGGAGCCGG 62.531 63.158 0.00 0.00 41.48 6.13
362 1466 2.027625 GAACGGTCACAAGGAGCCG 61.028 63.158 0.00 0.00 40.99 5.52
363 1467 2.027625 CGAACGGTCACAAGGAGCC 61.028 63.158 0.00 0.00 40.99 4.70
364 1468 0.389948 ATCGAACGGTCACAAGGAGC 60.390 55.000 0.00 0.00 40.65 4.70
365 1469 1.630148 GATCGAACGGTCACAAGGAG 58.370 55.000 0.00 0.00 0.00 3.69
366 1470 0.245539 GGATCGAACGGTCACAAGGA 59.754 55.000 0.00 0.00 0.00 3.36
367 1471 1.076533 CGGATCGAACGGTCACAAGG 61.077 60.000 0.00 0.00 0.00 3.61
513 1628 3.005539 TGAGGGTGAGGCTGAGGC 61.006 66.667 0.00 0.00 37.82 4.70
1143 2276 1.513622 GAGGGAGAGCACGAAGTCC 59.486 63.158 0.00 0.00 41.61 3.85
1218 2351 3.285215 GGCGAGAGGGCGTCGATA 61.285 66.667 0.00 0.00 39.92 2.92
1590 2723 0.175760 TCTCCGAATTTGAGAGGCCG 59.824 55.000 0.00 0.00 34.03 6.13
2406 3539 1.075601 TCATTCACTTGCCCTCCCTT 58.924 50.000 0.00 0.00 0.00 3.95
2475 3608 0.530744 CGAAGAGACATCACCCCGAA 59.469 55.000 0.00 0.00 0.00 4.30
2645 3781 9.360093 CATTAAAACCGTTGCTCCAAATTTATA 57.640 29.630 0.00 0.00 0.00 0.98
2676 3813 2.289840 AAGGGCAACATTGGGATGC 58.710 52.632 3.58 3.58 40.46 3.91
2694 3831 7.665561 TTGACATATTCGAAATCACACTTCA 57.334 32.000 0.00 0.00 0.00 3.02
2708 3845 7.719633 ACCAGTTACCACCATATTGACATATTC 59.280 37.037 0.00 0.00 0.00 1.75
2730 3867 5.906113 ACATCAGTCACTACTCTTACCAG 57.094 43.478 0.00 0.00 31.97 4.00
2731 3868 6.493802 AGAAACATCAGTCACTACTCTTACCA 59.506 38.462 0.00 0.00 31.97 3.25
2732 3869 6.926313 AGAAACATCAGTCACTACTCTTACC 58.074 40.000 0.00 0.00 31.97 2.85
2733 3870 7.822658 AGAGAAACATCAGTCACTACTCTTAC 58.177 38.462 0.00 0.00 31.97 2.34
2734 3871 8.948145 GTAGAGAAACATCAGTCACTACTCTTA 58.052 37.037 0.00 0.00 34.69 2.10
2829 3966 3.320541 CAGAGATAGCTCCAACAGTAGGG 59.679 52.174 3.92 0.00 42.30 3.53
2886 4030 9.531158 TTTCAAATATATGTCATATGGCATGGA 57.469 29.630 28.90 18.05 41.05 3.41
2992 4144 3.670627 GCTATCCAACAAACAAGAAGGCG 60.671 47.826 0.00 0.00 0.00 5.52
2994 4146 5.452078 TTGCTATCCAACAAACAAGAAGG 57.548 39.130 0.00 0.00 0.00 3.46
3093 4248 4.525100 ACAGGTACCTCTTTTCTCTCTGAC 59.475 45.833 12.84 0.00 0.00 3.51
3161 4317 8.579850 TGCATATCTTATCAAAGGTTTTGAGT 57.420 30.769 9.73 2.49 33.22 3.41
3162 4318 9.294030 GTTGCATATCTTATCAAAGGTTTTGAG 57.706 33.333 9.73 0.00 33.22 3.02
3163 4319 9.023962 AGTTGCATATCTTATCAAAGGTTTTGA 57.976 29.630 6.69 6.69 33.22 2.69
3216 4372 8.627208 ATGTAAGAAGTGAAACATGATGAACT 57.373 30.769 0.00 0.00 41.43 3.01
3358 4517 5.663106 AGGAGGAATAACTCACATTCTGCTA 59.337 40.000 0.00 0.00 39.27 3.49
3390 4549 5.514279 GTCTTTTGACCAGTTCAAGATGTG 58.486 41.667 0.00 0.00 45.22 3.21
3406 4565 7.058354 CGTCGACAAGTTCATAAATGTCTTTTG 59.942 37.037 17.16 0.00 39.94 2.44
3407 4566 7.069569 CGTCGACAAGTTCATAAATGTCTTTT 58.930 34.615 17.16 0.00 39.94 2.27
3411 4570 4.387862 ACCGTCGACAAGTTCATAAATGTC 59.612 41.667 17.16 0.00 38.98 3.06
3412 4571 4.312443 ACCGTCGACAAGTTCATAAATGT 58.688 39.130 17.16 0.00 0.00 2.71
3413 4572 4.921470 ACCGTCGACAAGTTCATAAATG 57.079 40.909 17.16 0.00 0.00 2.32
3468 4627 4.083961 GCATACATACTGCTGCAGATGAAG 60.084 45.833 34.28 22.95 36.68 3.02
3492 4651 8.438676 TCAGATAAGCAAGGACTAAATTTAGC 57.561 34.615 22.45 15.43 34.09 3.09
3504 4663 2.617308 CCACAGCATCAGATAAGCAAGG 59.383 50.000 0.00 0.00 0.00 3.61
3509 4668 2.229675 TCGCCACAGCATCAGATAAG 57.770 50.000 0.00 0.00 39.83 1.73
3547 4707 5.762218 CCAAATGCAAACAAATAAGGGACAA 59.238 36.000 0.00 0.00 0.00 3.18
3565 4725 5.828747 CCAGATTTCACTAGCATCCAAATG 58.171 41.667 0.00 0.00 35.87 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.