Multiple sequence alignment - TraesCS1D01G361200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G361200 chr1D 100.000 3650 0 0 1 3650 444134632 444138281 0.000000e+00 6741.0
1 TraesCS1D01G361200 chr1D 97.904 3245 55 7 1 3233 443959822 443963065 0.000000e+00 5603.0
2 TraesCS1D01G361200 chr1D 74.747 1485 312 46 1158 2603 340983771 340982311 1.120000e-169 606.0
3 TraesCS1D01G361200 chr1B 96.879 2467 55 10 779 3233 604201581 604199125 0.000000e+00 4109.0
4 TraesCS1D01G361200 chr1B 96.204 2476 71 11 772 3233 603744560 603747026 0.000000e+00 4030.0
5 TraesCS1D01G361200 chr1B 94.937 1343 62 3 779 2121 604204934 604203598 0.000000e+00 2098.0
6 TraesCS1D01G361200 chr1B 93.194 191 12 1 871 1061 604299520 604299331 2.780000e-71 279.0
7 TraesCS1D01G361200 chr2A 92.284 648 49 1 98 744 389535770 389536417 0.000000e+00 918.0
8 TraesCS1D01G361200 chr2A 72.957 1187 246 52 1426 2556 612079571 612078404 9.700000e-91 344.0
9 TraesCS1D01G361200 chr2A 71.666 1507 329 68 1153 2602 611999481 611998016 9.770000e-86 327.0
10 TraesCS1D01G361200 chr2B 88.140 742 88 0 1 742 751653145 751653886 0.000000e+00 883.0
11 TraesCS1D01G361200 chr2B 72.952 525 114 21 1422 1929 742083263 742083776 1.360000e-34 158.0
12 TraesCS1D01G361200 chr2B 94.595 37 2 0 1170 1206 666399077 666399113 1.420000e-04 58.4
13 TraesCS1D01G361200 chr5D 87.349 743 94 0 1 743 454733557 454734299 0.000000e+00 852.0
14 TraesCS1D01G361200 chr3D 76.432 1536 314 40 1156 2673 338581297 338582802 0.000000e+00 787.0
15 TraesCS1D01G361200 chr3D 83.156 754 113 14 1 747 608478373 608479119 0.000000e+00 676.0
16 TraesCS1D01G361200 chr3D 74.531 1492 305 57 1163 2603 562178549 562180016 6.790000e-162 580.0
17 TraesCS1D01G361200 chrUn 82.800 750 124 1 1 745 347353480 347352731 0.000000e+00 665.0
18 TraesCS1D01G361200 chr5A 82.800 750 124 1 1 745 697194784 697195533 0.000000e+00 665.0
19 TraesCS1D01G361200 chr5A 82.800 750 124 1 1 745 697275817 697276566 0.000000e+00 665.0
20 TraesCS1D01G361200 chr7D 82.321 741 122 9 8 744 53278233 53277498 5.140000e-178 634.0
21 TraesCS1D01G361200 chr1A 74.517 1554 326 55 1158 2669 440669608 440668083 2.410000e-171 612.0
22 TraesCS1D01G361200 chr3B 74.715 1491 304 54 1163 2603 749485018 749486485 6.750000e-167 597.0
23 TraesCS1D01G361200 chr3B 73.237 1390 306 41 1214 2579 436837472 436838819 2.590000e-121 446.0
24 TraesCS1D01G361200 chr2D 73.633 1536 311 68 1124 2598 470240340 470238838 1.170000e-139 507.0
25 TraesCS1D01G361200 chr2D 94.595 37 2 0 1170 1206 557920198 557920234 1.420000e-04 58.4
26 TraesCS1D01G361200 chr3A 73.077 1508 298 76 1163 2603 697507274 697508740 1.560000e-118 436.0
27 TraesCS1D01G361200 chr5B 89.091 55 6 0 1163 1217 689180330 689180276 6.540000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G361200 chr1D 444134632 444138281 3649 False 6741.0 6741 100.000 1 3650 1 chr1D.!!$F2 3649
1 TraesCS1D01G361200 chr1D 443959822 443963065 3243 False 5603.0 5603 97.904 1 3233 1 chr1D.!!$F1 3232
2 TraesCS1D01G361200 chr1D 340982311 340983771 1460 True 606.0 606 74.747 1158 2603 1 chr1D.!!$R1 1445
3 TraesCS1D01G361200 chr1B 603744560 603747026 2466 False 4030.0 4030 96.204 772 3233 1 chr1B.!!$F1 2461
4 TraesCS1D01G361200 chr1B 604199125 604204934 5809 True 3103.5 4109 95.908 779 3233 2 chr1B.!!$R2 2454
5 TraesCS1D01G361200 chr2A 389535770 389536417 647 False 918.0 918 92.284 98 744 1 chr2A.!!$F1 646
6 TraesCS1D01G361200 chr2A 612078404 612079571 1167 True 344.0 344 72.957 1426 2556 1 chr2A.!!$R2 1130
7 TraesCS1D01G361200 chr2A 611998016 611999481 1465 True 327.0 327 71.666 1153 2602 1 chr2A.!!$R1 1449
8 TraesCS1D01G361200 chr2B 751653145 751653886 741 False 883.0 883 88.140 1 742 1 chr2B.!!$F3 741
9 TraesCS1D01G361200 chr5D 454733557 454734299 742 False 852.0 852 87.349 1 743 1 chr5D.!!$F1 742
10 TraesCS1D01G361200 chr3D 338581297 338582802 1505 False 787.0 787 76.432 1156 2673 1 chr3D.!!$F1 1517
11 TraesCS1D01G361200 chr3D 608478373 608479119 746 False 676.0 676 83.156 1 747 1 chr3D.!!$F3 746
12 TraesCS1D01G361200 chr3D 562178549 562180016 1467 False 580.0 580 74.531 1163 2603 1 chr3D.!!$F2 1440
13 TraesCS1D01G361200 chrUn 347352731 347353480 749 True 665.0 665 82.800 1 745 1 chrUn.!!$R1 744
14 TraesCS1D01G361200 chr5A 697194784 697195533 749 False 665.0 665 82.800 1 745 1 chr5A.!!$F1 744
15 TraesCS1D01G361200 chr5A 697275817 697276566 749 False 665.0 665 82.800 1 745 1 chr5A.!!$F2 744
16 TraesCS1D01G361200 chr7D 53277498 53278233 735 True 634.0 634 82.321 8 744 1 chr7D.!!$R1 736
17 TraesCS1D01G361200 chr1A 440668083 440669608 1525 True 612.0 612 74.517 1158 2669 1 chr1A.!!$R1 1511
18 TraesCS1D01G361200 chr3B 749485018 749486485 1467 False 597.0 597 74.715 1163 2603 1 chr3B.!!$F2 1440
19 TraesCS1D01G361200 chr3B 436837472 436838819 1347 False 446.0 446 73.237 1214 2579 1 chr3B.!!$F1 1365
20 TraesCS1D01G361200 chr2D 470238838 470240340 1502 True 507.0 507 73.633 1124 2598 1 chr2D.!!$R1 1474
21 TraesCS1D01G361200 chr3A 697507274 697508740 1466 False 436.0 436 73.077 1163 2603 1 chr3A.!!$F1 1440

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 1.400530 CCAGGTCTTAGCCCCTACGG 61.401 65.000 0.00 0.00 0.00 4.02 F
726 733 4.143473 CGTGACGACGTAATAAAGCTTTGT 60.143 41.667 22.02 12.64 40.91 2.83 F
2122 5572 4.336433 TGGAGCTTGACTTGTTTCTTGAAG 59.664 41.667 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1053 4412 0.030773 GGCGACGATGAGTAGATGCA 59.969 55.000 0.0 0.0 0.00 3.96 R
2206 5665 1.143401 GCCGCCTCAGGTTAGGTAC 59.857 63.158 0.0 0.0 39.02 3.34 R
3446 6959 0.026285 CTTATGCAAGTACGCCACGC 59.974 55.000 0.0 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.562696 CGTGGTTATTTGCAATGTTGAGAGT 60.563 40.000 0.00 0.00 0.00 3.24
48 49 4.580167 TGCAATGTTGAGAGTGCTAAAACT 59.420 37.500 2.41 0.00 37.87 2.66
197 198 1.400530 CCAGGTCTTAGCCCCTACGG 61.401 65.000 0.00 0.00 0.00 4.02
377 378 5.898606 GCATCGTCTTTTATCTTCGAACATG 59.101 40.000 0.00 0.00 34.38 3.21
406 407 6.310941 AGATCCTGCTACTCTAGAAGCATTA 58.689 40.000 17.37 10.28 46.96 1.90
418 419 7.505585 ACTCTAGAAGCATTAGCAGTAAGAGAT 59.494 37.037 13.19 0.00 45.49 2.75
726 733 4.143473 CGTGACGACGTAATAAAGCTTTGT 60.143 41.667 22.02 12.64 40.91 2.83
2122 5572 4.336433 TGGAGCTTGACTTGTTTCTTGAAG 59.664 41.667 0.00 0.00 0.00 3.02
2206 5665 5.105957 CCATCTATCTCACCATCCGTCTTAG 60.106 48.000 0.00 0.00 0.00 2.18
2342 5822 1.751927 CTTGCATGGAGGAGCCCAC 60.752 63.158 0.00 0.00 39.34 4.61
2619 6117 2.480555 GGCACGGCATCTTCAACG 59.519 61.111 0.00 0.00 0.00 4.10
2775 6281 3.694072 TGTTTTTCTGTGCTAAGCAGTGT 59.306 39.130 0.00 0.00 40.08 3.55
2881 6387 7.763985 TGAAAAGATTGATTATACGAGCTGTGA 59.236 33.333 0.00 0.00 0.00 3.58
2940 6446 1.204467 CCACGTCATCCCCCAAATTTG 59.796 52.381 11.40 11.40 0.00 2.32
2966 6472 6.485171 AGTACCTTCACAAAATCCTGCTTAT 58.515 36.000 0.00 0.00 0.00 1.73
2967 6473 5.649782 ACCTTCACAAAATCCTGCTTATG 57.350 39.130 0.00 0.00 0.00 1.90
2977 6487 8.947115 ACAAAATCCTGCTTATGACTAAACTAC 58.053 33.333 0.00 0.00 0.00 2.73
3073 6584 9.440773 CTGTTTGGATATATAATCTGCTGCTAA 57.559 33.333 0.00 0.00 0.00 3.09
3212 6725 3.541632 ACTTTTGTGATCACCTCGTGTT 58.458 40.909 22.85 0.00 34.79 3.32
3241 6754 7.843490 ACTTTCTACATATATGCGTGTTTGT 57.157 32.000 12.79 4.36 0.00 2.83
3242 6755 8.263940 ACTTTCTACATATATGCGTGTTTGTT 57.736 30.769 12.79 0.00 0.00 2.83
3243 6756 8.726988 ACTTTCTACATATATGCGTGTTTGTTT 58.273 29.630 12.79 0.00 0.00 2.83
3244 6757 8.888332 TTTCTACATATATGCGTGTTTGTTTG 57.112 30.769 12.79 0.10 0.00 2.93
3245 6758 6.482835 TCTACATATATGCGTGTTTGTTTGC 58.517 36.000 12.79 0.00 0.00 3.68
3246 6759 5.309323 ACATATATGCGTGTTTGTTTGCT 57.691 34.783 12.79 0.00 0.00 3.91
3247 6760 5.094812 ACATATATGCGTGTTTGTTTGCTG 58.905 37.500 12.79 0.00 0.00 4.41
3248 6761 3.641437 ATATGCGTGTTTGTTTGCTGT 57.359 38.095 0.00 0.00 0.00 4.40
3249 6762 2.292103 ATGCGTGTTTGTTTGCTGTT 57.708 40.000 0.00 0.00 0.00 3.16
3250 6763 1.344458 TGCGTGTTTGTTTGCTGTTG 58.656 45.000 0.00 0.00 0.00 3.33
3251 6764 0.644843 GCGTGTTTGTTTGCTGTTGG 59.355 50.000 0.00 0.00 0.00 3.77
3252 6765 1.989430 CGTGTTTGTTTGCTGTTGGT 58.011 45.000 0.00 0.00 0.00 3.67
3253 6766 2.732597 GCGTGTTTGTTTGCTGTTGGTA 60.733 45.455 0.00 0.00 0.00 3.25
3254 6767 3.502920 CGTGTTTGTTTGCTGTTGGTAA 58.497 40.909 0.00 0.00 0.00 2.85
3255 6768 3.302170 CGTGTTTGTTTGCTGTTGGTAAC 59.698 43.478 0.00 0.00 0.00 2.50
3256 6769 4.490743 GTGTTTGTTTGCTGTTGGTAACT 58.509 39.130 0.00 0.00 37.61 2.24
3257 6770 4.926832 GTGTTTGTTTGCTGTTGGTAACTT 59.073 37.500 0.00 0.00 37.61 2.66
3258 6771 4.926238 TGTTTGTTTGCTGTTGGTAACTTG 59.074 37.500 0.00 0.00 37.61 3.16
3259 6772 5.164954 GTTTGTTTGCTGTTGGTAACTTGA 58.835 37.500 0.00 0.00 37.61 3.02
3260 6773 5.590530 TTGTTTGCTGTTGGTAACTTGAT 57.409 34.783 0.00 0.00 37.61 2.57
3261 6774 6.701145 TTGTTTGCTGTTGGTAACTTGATA 57.299 33.333 0.00 0.00 37.61 2.15
3262 6775 6.067263 TGTTTGCTGTTGGTAACTTGATAC 57.933 37.500 0.00 0.00 37.61 2.24
3263 6776 5.825679 TGTTTGCTGTTGGTAACTTGATACT 59.174 36.000 0.00 0.00 37.61 2.12
3264 6777 6.993308 TGTTTGCTGTTGGTAACTTGATACTA 59.007 34.615 0.00 0.00 37.61 1.82
3265 6778 7.663905 TGTTTGCTGTTGGTAACTTGATACTAT 59.336 33.333 0.00 0.00 37.61 2.12
3266 6779 9.158233 GTTTGCTGTTGGTAACTTGATACTATA 57.842 33.333 0.00 0.00 37.61 1.31
3267 6780 9.899661 TTTGCTGTTGGTAACTTGATACTATAT 57.100 29.630 0.00 0.00 37.61 0.86
3268 6781 8.887036 TGCTGTTGGTAACTTGATACTATATG 57.113 34.615 0.00 0.00 37.61 1.78
3269 6782 7.441157 TGCTGTTGGTAACTTGATACTATATGC 59.559 37.037 0.00 0.00 37.61 3.14
3270 6783 7.441157 GCTGTTGGTAACTTGATACTATATGCA 59.559 37.037 0.00 0.00 37.61 3.96
3271 6784 8.657074 TGTTGGTAACTTGATACTATATGCAC 57.343 34.615 0.00 0.00 37.61 4.57
3272 6785 8.482943 TGTTGGTAACTTGATACTATATGCACT 58.517 33.333 0.00 0.00 37.61 4.40
3273 6786 9.976511 GTTGGTAACTTGATACTATATGCACTA 57.023 33.333 0.00 0.00 37.61 2.74
3275 6788 9.363401 TGGTAACTTGATACTATATGCACTAGT 57.637 33.333 13.61 13.61 33.57 2.57
3279 6792 8.618702 ACTTGATACTATATGCACTAGTACGT 57.381 34.615 16.33 0.00 35.19 3.57
3280 6793 9.716531 ACTTGATACTATATGCACTAGTACGTA 57.283 33.333 16.33 0.00 35.19 3.57
3282 6795 8.194433 TGATACTATATGCACTAGTACGTAGC 57.806 38.462 16.33 0.00 35.19 3.58
3283 6796 7.820872 TGATACTATATGCACTAGTACGTAGCA 59.179 37.037 16.33 8.64 35.19 3.49
3284 6797 8.734218 ATACTATATGCACTAGTACGTAGCAT 57.266 34.615 19.24 19.24 46.53 3.79
3285 6798 7.450124 ACTATATGCACTAGTACGTAGCATT 57.550 36.000 20.14 12.52 42.76 3.56
3286 6799 7.883217 ACTATATGCACTAGTACGTAGCATTT 58.117 34.615 20.14 15.82 42.76 2.32
3287 6800 9.006839 ACTATATGCACTAGTACGTAGCATTTA 57.993 33.333 20.14 16.04 42.76 1.40
3290 6803 9.706691 ATATGCACTAGTACGTAGCATTTATTT 57.293 29.630 20.14 3.41 42.76 1.40
3292 6805 8.929827 TGCACTAGTACGTAGCATTTATTTAA 57.070 30.769 0.00 0.00 30.92 1.52
3293 6806 9.537192 TGCACTAGTACGTAGCATTTATTTAAT 57.463 29.630 0.00 0.00 30.92 1.40
3298 6811 8.888579 AGTACGTAGCATTTATTTAATCTGCT 57.111 30.769 12.09 12.09 32.21 4.24
3299 6812 9.326413 AGTACGTAGCATTTATTTAATCTGCTT 57.674 29.630 12.49 1.98 30.60 3.91
3314 6827 8.840833 TTAATCTGCTTATTATTATGCGACCA 57.159 30.769 0.00 0.00 32.56 4.02
3315 6828 6.727824 ATCTGCTTATTATTATGCGACCAC 57.272 37.500 0.00 0.00 32.56 4.16
3316 6829 4.994852 TCTGCTTATTATTATGCGACCACC 59.005 41.667 0.00 0.00 32.56 4.61
3317 6830 4.968259 TGCTTATTATTATGCGACCACCT 58.032 39.130 0.00 0.00 32.56 4.00
3318 6831 4.994852 TGCTTATTATTATGCGACCACCTC 59.005 41.667 0.00 0.00 32.56 3.85
3319 6832 5.221641 TGCTTATTATTATGCGACCACCTCT 60.222 40.000 0.00 0.00 32.56 3.69
3320 6833 5.348997 GCTTATTATTATGCGACCACCTCTC 59.651 44.000 0.00 0.00 0.00 3.20
3321 6834 6.665992 TTATTATTATGCGACCACCTCTCT 57.334 37.500 0.00 0.00 0.00 3.10
3322 6835 5.552870 ATTATTATGCGACCACCTCTCTT 57.447 39.130 0.00 0.00 0.00 2.85
3323 6836 6.665992 ATTATTATGCGACCACCTCTCTTA 57.334 37.500 0.00 0.00 0.00 2.10
3324 6837 6.474140 TTATTATGCGACCACCTCTCTTAA 57.526 37.500 0.00 0.00 0.00 1.85
3325 6838 5.552870 ATTATGCGACCACCTCTCTTAAT 57.447 39.130 0.00 0.00 0.00 1.40
3326 6839 2.672961 TGCGACCACCTCTCTTAATG 57.327 50.000 0.00 0.00 0.00 1.90
3327 6840 1.207089 TGCGACCACCTCTCTTAATGG 59.793 52.381 0.00 0.00 38.26 3.16
3329 6842 2.354805 GCGACCACCTCTCTTAATGGTT 60.355 50.000 0.00 0.00 45.55 3.67
3330 6843 3.118884 GCGACCACCTCTCTTAATGGTTA 60.119 47.826 0.00 0.00 45.55 2.85
3331 6844 4.683832 CGACCACCTCTCTTAATGGTTAG 58.316 47.826 0.00 0.00 45.55 2.34
3332 6845 4.159879 CGACCACCTCTCTTAATGGTTAGT 59.840 45.833 0.00 0.00 45.55 2.24
3333 6846 5.359009 CGACCACCTCTCTTAATGGTTAGTA 59.641 44.000 0.00 0.00 45.55 1.82
3334 6847 6.127535 CGACCACCTCTCTTAATGGTTAGTAA 60.128 42.308 0.00 0.00 45.55 2.24
3335 6848 7.184067 ACCACCTCTCTTAATGGTTAGTAAG 57.816 40.000 0.00 0.00 42.98 2.34
3336 6849 6.729569 ACCACCTCTCTTAATGGTTAGTAAGT 59.270 38.462 0.00 0.00 42.98 2.24
3337 6850 7.897565 ACCACCTCTCTTAATGGTTAGTAAGTA 59.102 37.037 0.00 0.00 42.98 2.24
3338 6851 8.196103 CCACCTCTCTTAATGGTTAGTAAGTAC 58.804 40.741 0.00 0.00 36.24 2.73
3339 6852 8.968969 CACCTCTCTTAATGGTTAGTAAGTACT 58.031 37.037 0.00 0.00 36.24 2.73
3340 6853 8.968969 ACCTCTCTTAATGGTTAGTAAGTACTG 58.031 37.037 0.00 0.00 36.24 2.74
3341 6854 8.968969 CCTCTCTTAATGGTTAGTAAGTACTGT 58.031 37.037 0.00 0.00 36.24 3.55
3370 6883 4.913376 CTGTAAGCCTGTTATTCACATGC 58.087 43.478 0.00 0.00 45.01 4.06
3371 6884 4.331108 TGTAAGCCTGTTATTCACATGCA 58.669 39.130 5.26 0.00 46.58 3.96
3372 6885 4.395854 TGTAAGCCTGTTATTCACATGCAG 59.604 41.667 0.00 0.00 46.58 4.41
3373 6886 3.077484 AGCCTGTTATTCACATGCAGT 57.923 42.857 0.00 0.00 46.58 4.40
3374 6887 2.751259 AGCCTGTTATTCACATGCAGTG 59.249 45.455 9.27 9.27 46.58 3.66
3375 6888 3.811810 AGCCTGTTATTCACATGCAGTGT 60.812 43.478 13.59 6.17 46.58 3.55
3376 6889 5.289894 AGCCTGTTATTCACATGCAGTGTT 61.290 41.667 13.59 7.52 46.58 3.32
3377 6890 7.055546 AGCCTGTTATTCACATGCAGTGTTC 62.056 44.000 13.59 5.02 46.58 3.18
3383 6896 2.693797 CACATGCAGTGTTCAACTCC 57.306 50.000 7.80 0.00 43.40 3.85
3384 6897 1.069703 CACATGCAGTGTTCAACTCCG 60.070 52.381 7.80 0.00 43.40 4.63
3385 6898 1.229428 CATGCAGTGTTCAACTCCGT 58.771 50.000 0.00 0.00 36.83 4.69
3386 6899 1.603802 CATGCAGTGTTCAACTCCGTT 59.396 47.619 0.00 0.00 36.83 4.44
3387 6900 2.605837 TGCAGTGTTCAACTCCGTTA 57.394 45.000 0.00 0.00 36.83 3.18
3388 6901 2.206750 TGCAGTGTTCAACTCCGTTAC 58.793 47.619 0.00 0.00 36.83 2.50
3389 6902 1.191647 GCAGTGTTCAACTCCGTTACG 59.808 52.381 0.00 0.00 36.83 3.18
3390 6903 2.466846 CAGTGTTCAACTCCGTTACGT 58.533 47.619 3.52 0.00 36.83 3.57
3391 6904 3.631144 CAGTGTTCAACTCCGTTACGTA 58.369 45.455 3.52 0.00 36.83 3.57
3392 6905 4.043750 CAGTGTTCAACTCCGTTACGTAA 58.956 43.478 3.29 3.29 36.83 3.18
3393 6906 4.044426 AGTGTTCAACTCCGTTACGTAAC 58.956 43.478 25.27 25.27 31.64 2.50
3394 6907 3.182372 GTGTTCAACTCCGTTACGTAACC 59.818 47.826 27.97 13.83 32.69 2.85
3395 6908 2.330231 TCAACTCCGTTACGTAACCG 57.670 50.000 27.97 22.55 40.83 4.44
3396 6909 0.710017 CAACTCCGTTACGTAACCGC 59.290 55.000 27.97 8.40 37.70 5.68
3397 6910 0.388520 AACTCCGTTACGTAACCGCC 60.389 55.000 27.97 8.06 37.70 6.13
3398 6911 1.244019 ACTCCGTTACGTAACCGCCT 61.244 55.000 27.97 9.58 37.70 5.52
3399 6912 0.109132 CTCCGTTACGTAACCGCCTT 60.109 55.000 27.97 0.00 37.70 4.35
3400 6913 0.109319 TCCGTTACGTAACCGCCTTC 60.109 55.000 27.97 6.35 37.70 3.46
3401 6914 1.078201 CCGTTACGTAACCGCCTTCC 61.078 60.000 27.97 5.67 37.70 3.46
3402 6915 0.109132 CGTTACGTAACCGCCTTCCT 60.109 55.000 27.97 0.00 37.70 3.36
3403 6916 1.353076 GTTACGTAACCGCCTTCCTG 58.647 55.000 24.84 0.00 37.70 3.86
3404 6917 0.390209 TTACGTAACCGCCTTCCTGC 60.390 55.000 3.29 0.00 37.70 4.85
3405 6918 1.534336 TACGTAACCGCCTTCCTGCA 61.534 55.000 0.00 0.00 37.70 4.41
3406 6919 2.100631 CGTAACCGCCTTCCTGCAG 61.101 63.158 6.78 6.78 0.00 4.41
3407 6920 1.295423 GTAACCGCCTTCCTGCAGA 59.705 57.895 17.39 0.00 0.00 4.26
3408 6921 0.741221 GTAACCGCCTTCCTGCAGAG 60.741 60.000 17.39 5.22 0.00 3.35
3409 6922 0.902984 TAACCGCCTTCCTGCAGAGA 60.903 55.000 17.39 8.13 0.00 3.10
3410 6923 2.177594 AACCGCCTTCCTGCAGAGAG 62.178 60.000 17.39 12.13 0.00 3.20
3411 6924 2.354401 CCGCCTTCCTGCAGAGAGA 61.354 63.158 17.39 0.20 0.00 3.10
3412 6925 1.141449 CGCCTTCCTGCAGAGAGAG 59.859 63.158 17.39 6.94 0.00 3.20
3413 6926 1.318886 CGCCTTCCTGCAGAGAGAGA 61.319 60.000 17.39 0.00 0.00 3.10
3414 6927 0.461135 GCCTTCCTGCAGAGAGAGAG 59.539 60.000 17.39 5.47 0.00 3.20
3415 6928 1.113788 CCTTCCTGCAGAGAGAGAGG 58.886 60.000 17.39 10.60 0.00 3.69
3416 6929 1.113788 CTTCCTGCAGAGAGAGAGGG 58.886 60.000 17.39 0.00 0.00 4.30
3417 6930 0.707024 TTCCTGCAGAGAGAGAGGGA 59.293 55.000 17.39 0.00 0.00 4.20
3418 6931 0.258484 TCCTGCAGAGAGAGAGGGAG 59.742 60.000 17.39 0.00 0.00 4.30
3419 6932 0.756442 CCTGCAGAGAGAGAGGGAGG 60.756 65.000 17.39 0.00 32.45 4.30
3420 6933 0.756442 CTGCAGAGAGAGAGGGAGGG 60.756 65.000 8.42 0.00 0.00 4.30
3421 6934 1.217747 TGCAGAGAGAGAGGGAGGGA 61.218 60.000 0.00 0.00 0.00 4.20
3422 6935 0.468029 GCAGAGAGAGAGGGAGGGAG 60.468 65.000 0.00 0.00 0.00 4.30
3423 6936 0.185901 CAGAGAGAGAGGGAGGGAGG 59.814 65.000 0.00 0.00 0.00 4.30
3424 6937 0.998945 AGAGAGAGAGGGAGGGAGGG 60.999 65.000 0.00 0.00 0.00 4.30
3425 6938 0.996762 GAGAGAGAGGGAGGGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
3426 6939 0.998945 AGAGAGAGGGAGGGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
3427 6940 2.018086 AGAGAGGGAGGGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
3428 6941 3.039526 AGAGGGAGGGAGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
3429 6942 4.890306 GAGGGAGGGAGGGAGGGC 62.890 77.778 0.00 0.00 0.00 5.19
3431 6944 4.523282 GGGAGGGAGGGAGGGCAT 62.523 72.222 0.00 0.00 0.00 4.40
3432 6945 3.174265 GGAGGGAGGGAGGGCATG 61.174 72.222 0.00 0.00 0.00 4.06
3433 6946 3.883549 GAGGGAGGGAGGGCATGC 61.884 72.222 9.90 9.90 0.00 4.06
3436 6949 4.201122 GGAGGGAGGGCATGCCAG 62.201 72.222 36.56 0.00 43.31 4.85
3437 6950 4.891037 GAGGGAGGGCATGCCAGC 62.891 72.222 36.56 26.28 43.31 4.85
3459 6972 3.773630 CGTGGCGTGGCGTACTTG 61.774 66.667 0.00 0.00 0.00 3.16
3460 6973 4.084888 GTGGCGTGGCGTACTTGC 62.085 66.667 0.00 0.00 0.00 4.01
3461 6974 4.610714 TGGCGTGGCGTACTTGCA 62.611 61.111 0.00 0.00 36.28 4.08
3462 6975 3.124921 GGCGTGGCGTACTTGCAT 61.125 61.111 0.00 0.00 36.28 3.96
3463 6976 1.812093 GGCGTGGCGTACTTGCATA 60.812 57.895 0.00 0.00 36.28 3.14
3464 6977 1.363145 GGCGTGGCGTACTTGCATAA 61.363 55.000 0.00 0.00 36.28 1.90
3465 6978 0.026285 GCGTGGCGTACTTGCATAAG 59.974 55.000 0.00 0.00 39.86 1.73
3467 6980 2.532235 CGTGGCGTACTTGCATAAGTA 58.468 47.619 0.00 0.00 45.07 2.24
3474 6987 1.734163 ACTTGCATAAGTACACCGCC 58.266 50.000 0.00 0.00 45.07 6.13
3475 6988 1.278127 ACTTGCATAAGTACACCGCCT 59.722 47.619 0.00 0.00 45.07 5.52
3476 6989 2.290071 ACTTGCATAAGTACACCGCCTT 60.290 45.455 0.00 0.00 45.07 4.35
3477 6990 2.018542 TGCATAAGTACACCGCCTTC 57.981 50.000 0.00 0.00 0.00 3.46
3478 6991 1.296727 GCATAAGTACACCGCCTTCC 58.703 55.000 0.00 0.00 0.00 3.46
3479 6992 1.134491 GCATAAGTACACCGCCTTCCT 60.134 52.381 0.00 0.00 0.00 3.36
3480 6993 2.550978 CATAAGTACACCGCCTTCCTG 58.449 52.381 0.00 0.00 0.00 3.86
3481 6994 0.248289 TAAGTACACCGCCTTCCTGC 59.752 55.000 0.00 0.00 0.00 4.85
3482 6995 1.764571 AAGTACACCGCCTTCCTGCA 61.765 55.000 0.00 0.00 0.00 4.41
3483 6996 1.741770 GTACACCGCCTTCCTGCAG 60.742 63.158 6.78 6.78 0.00 4.41
3484 6997 1.911269 TACACCGCCTTCCTGCAGA 60.911 57.895 17.39 0.00 0.00 4.26
3485 6998 1.888436 TACACCGCCTTCCTGCAGAG 61.888 60.000 17.39 5.22 0.00 3.35
3486 6999 2.604686 ACCGCCTTCCTGCAGAGA 60.605 61.111 17.39 8.13 0.00 3.10
3487 7000 2.186384 CCGCCTTCCTGCAGAGAG 59.814 66.667 17.39 12.13 0.00 3.20
3488 7001 2.354401 CCGCCTTCCTGCAGAGAGA 61.354 63.158 17.39 0.20 0.00 3.10
3489 7002 1.153667 CGCCTTCCTGCAGAGAGAC 60.154 63.158 17.39 3.88 0.00 3.36
3490 7003 1.603236 CGCCTTCCTGCAGAGAGACT 61.603 60.000 17.39 0.00 0.00 3.24
3491 7004 0.612744 GCCTTCCTGCAGAGAGACTT 59.387 55.000 17.39 0.00 0.00 3.01
3492 7005 1.675415 GCCTTCCTGCAGAGAGACTTG 60.675 57.143 17.39 0.00 0.00 3.16
3493 7006 1.066286 CCTTCCTGCAGAGAGACTTGG 60.066 57.143 17.39 2.99 0.00 3.61
3494 7007 1.622811 CTTCCTGCAGAGAGACTTGGT 59.377 52.381 17.39 0.00 0.00 3.67
3495 7008 1.722034 TCCTGCAGAGAGACTTGGTT 58.278 50.000 17.39 0.00 0.00 3.67
3496 7009 1.620819 TCCTGCAGAGAGACTTGGTTC 59.379 52.381 17.39 0.00 0.00 3.62
3497 7010 1.671261 CCTGCAGAGAGACTTGGTTCG 60.671 57.143 17.39 0.00 0.00 3.95
3498 7011 1.000283 CTGCAGAGAGACTTGGTTCGT 60.000 52.381 8.42 0.00 0.00 3.85
3499 7012 1.000163 TGCAGAGAGACTTGGTTCGTC 60.000 52.381 0.00 0.00 0.00 4.20
3500 7013 1.670380 GCAGAGAGACTTGGTTCGTCC 60.670 57.143 0.00 0.00 31.83 4.79
3501 7014 1.067495 CAGAGAGACTTGGTTCGTCCC 60.067 57.143 0.00 0.00 34.77 4.46
3502 7015 0.246910 GAGAGACTTGGTTCGTCCCC 59.753 60.000 0.00 0.00 34.77 4.81
3503 7016 1.080025 GAGACTTGGTTCGTCCCCG 60.080 63.158 0.00 0.00 34.77 5.73
3504 7017 2.047560 GACTTGGTTCGTCCCCGG 60.048 66.667 0.00 0.00 34.77 5.73
3505 7018 4.324991 ACTTGGTTCGTCCCCGGC 62.325 66.667 0.00 0.00 34.77 6.13
3506 7019 4.323477 CTTGGTTCGTCCCCGGCA 62.323 66.667 0.00 0.00 34.77 5.69
3507 7020 3.835790 CTTGGTTCGTCCCCGGCAA 62.836 63.158 0.00 0.00 34.77 4.52
3508 7021 4.629523 TGGTTCGTCCCCGGCAAC 62.630 66.667 0.00 0.00 34.77 4.17
3528 7041 4.256278 CCCCGGCCTCCTCCCTAT 62.256 72.222 0.00 0.00 0.00 2.57
3529 7042 2.604991 CCCGGCCTCCTCCCTATC 60.605 72.222 0.00 0.00 0.00 2.08
3530 7043 2.201490 CCGGCCTCCTCCCTATCA 59.799 66.667 0.00 0.00 0.00 2.15
3531 7044 1.459539 CCGGCCTCCTCCCTATCAA 60.460 63.158 0.00 0.00 0.00 2.57
3532 7045 1.476007 CCGGCCTCCTCCCTATCAAG 61.476 65.000 0.00 0.00 0.00 3.02
3533 7046 1.476007 CGGCCTCCTCCCTATCAAGG 61.476 65.000 0.00 0.00 43.25 3.61
3534 7047 0.400670 GGCCTCCTCCCTATCAAGGT 60.401 60.000 0.00 0.00 41.89 3.50
3535 7048 0.761802 GCCTCCTCCCTATCAAGGTG 59.238 60.000 0.00 0.00 41.89 4.00
3536 7049 0.761802 CCTCCTCCCTATCAAGGTGC 59.238 60.000 0.00 0.00 41.89 5.01
3537 7050 1.694048 CCTCCTCCCTATCAAGGTGCT 60.694 57.143 0.00 0.00 41.89 4.40
3538 7051 1.691434 CTCCTCCCTATCAAGGTGCTC 59.309 57.143 0.00 0.00 41.89 4.26
3539 7052 1.292242 TCCTCCCTATCAAGGTGCTCT 59.708 52.381 0.00 0.00 41.89 4.09
3540 7053 1.691434 CCTCCCTATCAAGGTGCTCTC 59.309 57.143 0.00 0.00 41.89 3.20
3541 7054 1.691434 CTCCCTATCAAGGTGCTCTCC 59.309 57.143 0.00 0.00 41.89 3.71
3542 7055 0.761802 CCCTATCAAGGTGCTCTCCC 59.238 60.000 0.00 0.00 41.89 4.30
3543 7056 1.694048 CCCTATCAAGGTGCTCTCCCT 60.694 57.143 0.00 0.00 41.89 4.20
3544 7057 1.691434 CCTATCAAGGTGCTCTCCCTC 59.309 57.143 0.00 0.00 38.19 4.30
3545 7058 2.676748 CTATCAAGGTGCTCTCCCTCT 58.323 52.381 0.00 0.00 0.00 3.69
3546 7059 1.494960 ATCAAGGTGCTCTCCCTCTC 58.505 55.000 0.00 0.00 0.00 3.20
3547 7060 0.411452 TCAAGGTGCTCTCCCTCTCT 59.589 55.000 0.00 0.00 0.00 3.10
3548 7061 0.823460 CAAGGTGCTCTCCCTCTCTC 59.177 60.000 0.00 0.00 0.00 3.20
3549 7062 0.325203 AAGGTGCTCTCCCTCTCTCC 60.325 60.000 0.00 0.00 0.00 3.71
3550 7063 1.221213 AGGTGCTCTCCCTCTCTCCT 61.221 60.000 0.00 0.00 0.00 3.69
3551 7064 0.755327 GGTGCTCTCCCTCTCTCCTC 60.755 65.000 0.00 0.00 0.00 3.71
3552 7065 0.258774 GTGCTCTCCCTCTCTCCTCT 59.741 60.000 0.00 0.00 0.00 3.69
3553 7066 1.006813 TGCTCTCCCTCTCTCCTCTT 58.993 55.000 0.00 0.00 0.00 2.85
3554 7067 1.064017 TGCTCTCCCTCTCTCCTCTTC 60.064 57.143 0.00 0.00 0.00 2.87
3555 7068 1.754201 GCTCTCCCTCTCTCCTCTTCC 60.754 61.905 0.00 0.00 0.00 3.46
3556 7069 1.852965 CTCTCCCTCTCTCCTCTTCCT 59.147 57.143 0.00 0.00 0.00 3.36
3557 7070 1.850345 TCTCCCTCTCTCCTCTTCCTC 59.150 57.143 0.00 0.00 0.00 3.71
3558 7071 1.852965 CTCCCTCTCTCCTCTTCCTCT 59.147 57.143 0.00 0.00 0.00 3.69
3559 7072 1.850345 TCCCTCTCTCCTCTTCCTCTC 59.150 57.143 0.00 0.00 0.00 3.20
3560 7073 1.133482 CCCTCTCTCCTCTTCCTCTCC 60.133 61.905 0.00 0.00 0.00 3.71
3561 7074 1.133482 CCTCTCTCCTCTTCCTCTCCC 60.133 61.905 0.00 0.00 0.00 4.30
3562 7075 1.852965 CTCTCTCCTCTTCCTCTCCCT 59.147 57.143 0.00 0.00 0.00 4.20
3563 7076 2.244769 CTCTCTCCTCTTCCTCTCCCTT 59.755 54.545 0.00 0.00 0.00 3.95
3564 7077 2.243736 TCTCTCCTCTTCCTCTCCCTTC 59.756 54.545 0.00 0.00 0.00 3.46
3565 7078 2.244769 CTCTCCTCTTCCTCTCCCTTCT 59.755 54.545 0.00 0.00 0.00 2.85
3566 7079 2.243736 TCTCCTCTTCCTCTCCCTTCTC 59.756 54.545 0.00 0.00 0.00 2.87
3567 7080 2.244769 CTCCTCTTCCTCTCCCTTCTCT 59.755 54.545 0.00 0.00 0.00 3.10
3568 7081 2.243736 TCCTCTTCCTCTCCCTTCTCTC 59.756 54.545 0.00 0.00 0.00 3.20
3569 7082 2.244769 CCTCTTCCTCTCCCTTCTCTCT 59.755 54.545 0.00 0.00 0.00 3.10
3570 7083 3.555966 CTCTTCCTCTCCCTTCTCTCTC 58.444 54.545 0.00 0.00 0.00 3.20
3571 7084 3.197983 TCTTCCTCTCCCTTCTCTCTCT 58.802 50.000 0.00 0.00 0.00 3.10
3572 7085 3.202151 TCTTCCTCTCCCTTCTCTCTCTC 59.798 52.174 0.00 0.00 0.00 3.20
3573 7086 1.850345 TCCTCTCCCTTCTCTCTCTCC 59.150 57.143 0.00 0.00 0.00 3.71
3574 7087 1.133482 CCTCTCCCTTCTCTCTCTCCC 60.133 61.905 0.00 0.00 0.00 4.30
3575 7088 0.930726 TCTCCCTTCTCTCTCTCCCC 59.069 60.000 0.00 0.00 0.00 4.81
3576 7089 0.105709 CTCCCTTCTCTCTCTCCCCC 60.106 65.000 0.00 0.00 0.00 5.40
3577 7090 0.855855 TCCCTTCTCTCTCTCCCCCA 60.856 60.000 0.00 0.00 0.00 4.96
3578 7091 0.043334 CCCTTCTCTCTCTCCCCCAA 59.957 60.000 0.00 0.00 0.00 4.12
3579 7092 1.199615 CCTTCTCTCTCTCCCCCAAC 58.800 60.000 0.00 0.00 0.00 3.77
3580 7093 1.199615 CTTCTCTCTCTCCCCCAACC 58.800 60.000 0.00 0.00 0.00 3.77
3581 7094 0.793617 TTCTCTCTCTCCCCCAACCT 59.206 55.000 0.00 0.00 0.00 3.50
3582 7095 0.041833 TCTCTCTCTCCCCCAACCTG 59.958 60.000 0.00 0.00 0.00 4.00
3583 7096 0.041833 CTCTCTCTCCCCCAACCTGA 59.958 60.000 0.00 0.00 0.00 3.86
3584 7097 0.252284 TCTCTCTCCCCCAACCTGAC 60.252 60.000 0.00 0.00 0.00 3.51
3585 7098 1.608717 CTCTCTCCCCCAACCTGACG 61.609 65.000 0.00 0.00 0.00 4.35
3586 7099 1.913762 CTCTCCCCCAACCTGACGT 60.914 63.158 0.00 0.00 0.00 4.34
3587 7100 0.613853 CTCTCCCCCAACCTGACGTA 60.614 60.000 0.00 0.00 0.00 3.57
3588 7101 0.901580 TCTCCCCCAACCTGACGTAC 60.902 60.000 0.00 0.00 0.00 3.67
3589 7102 1.896122 CTCCCCCAACCTGACGTACC 61.896 65.000 0.00 0.00 0.00 3.34
3590 7103 1.916777 CCCCCAACCTGACGTACCT 60.917 63.158 0.00 0.00 0.00 3.08
3591 7104 1.295423 CCCCAACCTGACGTACCTG 59.705 63.158 0.00 0.00 0.00 4.00
3592 7105 1.375523 CCCAACCTGACGTACCTGC 60.376 63.158 0.00 0.00 0.00 4.85
3593 7106 1.671742 CCAACCTGACGTACCTGCT 59.328 57.895 0.00 0.00 0.00 4.24
3594 7107 0.389948 CCAACCTGACGTACCTGCTC 60.390 60.000 0.00 0.00 0.00 4.26
3595 7108 0.389948 CAACCTGACGTACCTGCTCC 60.390 60.000 0.00 0.00 0.00 4.70
3596 7109 0.542232 AACCTGACGTACCTGCTCCT 60.542 55.000 0.00 0.00 0.00 3.69
3597 7110 0.966370 ACCTGACGTACCTGCTCCTC 60.966 60.000 0.00 0.00 0.00 3.71
3598 7111 1.429825 CTGACGTACCTGCTCCTCG 59.570 63.158 0.00 0.00 0.00 4.63
3599 7112 1.002990 TGACGTACCTGCTCCTCGA 60.003 57.895 0.00 0.00 0.00 4.04
3600 7113 0.393944 TGACGTACCTGCTCCTCGAT 60.394 55.000 0.00 0.00 0.00 3.59
3601 7114 0.308376 GACGTACCTGCTCCTCGATC 59.692 60.000 0.00 0.00 0.00 3.69
3602 7115 1.280142 CGTACCTGCTCCTCGATCG 59.720 63.158 9.36 9.36 0.00 3.69
3603 7116 1.008309 GTACCTGCTCCTCGATCGC 60.008 63.158 11.09 0.00 0.00 4.58
3604 7117 2.194212 TACCTGCTCCTCGATCGCC 61.194 63.158 11.09 0.00 0.00 5.54
3605 7118 2.904178 TACCTGCTCCTCGATCGCCA 62.904 60.000 11.09 1.46 0.00 5.69
3606 7119 2.027314 CTGCTCCTCGATCGCCAG 59.973 66.667 11.09 3.24 0.00 4.85
3607 7120 3.496875 CTGCTCCTCGATCGCCAGG 62.497 68.421 15.06 15.06 0.00 4.45
3608 7121 3.532155 GCTCCTCGATCGCCAGGT 61.532 66.667 19.18 0.00 0.00 4.00
3609 7122 3.082579 GCTCCTCGATCGCCAGGTT 62.083 63.158 19.18 0.00 0.00 3.50
3610 7123 1.227089 CTCCTCGATCGCCAGGTTG 60.227 63.158 19.18 11.54 0.00 3.77
3611 7124 2.892425 CCTCGATCGCCAGGTTGC 60.892 66.667 11.09 0.00 0.00 4.17
3612 7125 2.185350 CTCGATCGCCAGGTTGCT 59.815 61.111 11.09 0.00 0.00 3.91
3613 7126 1.448540 CTCGATCGCCAGGTTGCTT 60.449 57.895 11.09 0.00 0.00 3.91
3614 7127 1.699656 CTCGATCGCCAGGTTGCTTG 61.700 60.000 11.09 0.00 0.00 4.01
3615 7128 2.486966 GATCGCCAGGTTGCTTGC 59.513 61.111 0.00 0.00 0.00 4.01
3616 7129 2.034687 ATCGCCAGGTTGCTTGCT 59.965 55.556 0.00 0.00 0.00 3.91
3617 7130 1.986575 GATCGCCAGGTTGCTTGCTC 61.987 60.000 0.00 0.00 0.00 4.26
3618 7131 2.753009 ATCGCCAGGTTGCTTGCTCA 62.753 55.000 0.00 0.00 0.00 4.26
3619 7132 2.554636 CGCCAGGTTGCTTGCTCAA 61.555 57.895 0.00 0.00 0.00 3.02
3620 7133 1.006922 GCCAGGTTGCTTGCTCAAC 60.007 57.895 8.03 8.03 44.07 3.18
3621 7134 1.458639 GCCAGGTTGCTTGCTCAACT 61.459 55.000 13.70 2.20 44.19 3.16
3622 7135 0.595095 CCAGGTTGCTTGCTCAACTC 59.405 55.000 13.70 7.01 44.19 3.01
3623 7136 0.595095 CAGGTTGCTTGCTCAACTCC 59.405 55.000 13.70 2.78 44.19 3.85
3624 7137 0.183492 AGGTTGCTTGCTCAACTCCA 59.817 50.000 13.70 0.00 44.19 3.86
3625 7138 1.202976 AGGTTGCTTGCTCAACTCCAT 60.203 47.619 13.70 0.82 44.19 3.41
3626 7139 1.615392 GGTTGCTTGCTCAACTCCATT 59.385 47.619 13.70 0.00 44.19 3.16
3627 7140 2.352127 GGTTGCTTGCTCAACTCCATTC 60.352 50.000 13.70 0.00 44.19 2.67
3628 7141 1.538047 TGCTTGCTCAACTCCATTCC 58.462 50.000 0.00 0.00 0.00 3.01
3629 7142 0.813821 GCTTGCTCAACTCCATTCCC 59.186 55.000 0.00 0.00 0.00 3.97
3630 7143 1.089920 CTTGCTCAACTCCATTCCCG 58.910 55.000 0.00 0.00 0.00 5.14
3631 7144 0.690192 TTGCTCAACTCCATTCCCGA 59.310 50.000 0.00 0.00 0.00 5.14
3632 7145 0.036388 TGCTCAACTCCATTCCCGAC 60.036 55.000 0.00 0.00 0.00 4.79
3633 7146 0.744771 GCTCAACTCCATTCCCGACC 60.745 60.000 0.00 0.00 0.00 4.79
3634 7147 0.107654 CTCAACTCCATTCCCGACCC 60.108 60.000 0.00 0.00 0.00 4.46
3635 7148 0.838554 TCAACTCCATTCCCGACCCA 60.839 55.000 0.00 0.00 0.00 4.51
3636 7149 0.392998 CAACTCCATTCCCGACCCAG 60.393 60.000 0.00 0.00 0.00 4.45
3637 7150 1.562672 AACTCCATTCCCGACCCAGG 61.563 60.000 0.00 0.00 0.00 4.45
3638 7151 3.406595 CTCCATTCCCGACCCAGGC 62.407 68.421 0.00 0.00 0.00 4.85
3639 7152 4.856801 CCATTCCCGACCCAGGCG 62.857 72.222 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.691797 ACCTAACAAAATCTTCAAGTTTTAGCA 58.308 29.630 0.00 0.00 0.00 3.49
48 49 8.966868 AGACTGAAAACCTAACAAAATCTTCAA 58.033 29.630 0.00 0.00 0.00 2.69
197 198 2.125225 ACCCCCTGACCCTTCTCC 59.875 66.667 0.00 0.00 0.00 3.71
377 378 6.458232 TTCTAGAGTAGCAGGATCTTTGAC 57.542 41.667 0.00 0.00 0.00 3.18
406 407 4.961730 AGATCAAGACCATCTCTTACTGCT 59.038 41.667 0.00 0.00 37.08 4.24
418 419 2.502142 ATGCTGCAAGATCAAGACCA 57.498 45.000 6.36 0.00 34.07 4.02
681 688 8.218441 TCACGATGTTTACAAAGACGAATAAAG 58.782 33.333 0.00 0.00 0.00 1.85
745 752 4.216257 GCGACGTACATACCCTCCTATTTA 59.784 45.833 0.00 0.00 0.00 1.40
1053 4412 0.030773 GGCGACGATGAGTAGATGCA 59.969 55.000 0.00 0.00 0.00 3.96
2122 5572 1.153509 CGGTAATGTCCGGGGTGTC 60.154 63.158 0.00 0.00 45.88 3.67
2206 5665 1.143401 GCCGCCTCAGGTTAGGTAC 59.857 63.158 0.00 0.00 39.02 3.34
2342 5822 3.370953 CCAGGGTATTTCTTCACTGGGAG 60.371 52.174 5.64 0.00 41.28 4.30
2619 6117 2.032681 AGTTGAACCGGAGCTGCC 59.967 61.111 9.46 0.00 0.00 4.85
2775 6281 4.125703 GGTTCCATTGAAAAATGCACACA 58.874 39.130 0.00 0.00 30.79 3.72
2881 6387 0.958822 GCCATGACGTTTTCCCTTGT 59.041 50.000 0.00 0.00 0.00 3.16
2911 6417 1.202486 GGGATGACGTGGAAATAGCGA 60.202 52.381 0.00 0.00 0.00 4.93
2966 6472 7.305813 TCACAGTAAATGGGTAGTTTAGTCA 57.694 36.000 0.00 0.00 32.41 3.41
2967 6473 8.611654 TTTCACAGTAAATGGGTAGTTTAGTC 57.388 34.615 0.00 0.00 32.41 2.59
2977 6487 8.359642 TCTTCTTCATTTTTCACAGTAAATGGG 58.640 33.333 7.22 2.92 40.46 4.00
3022 6532 0.529378 CTGTTTTGGCCTCCTGATGC 59.471 55.000 3.32 0.00 0.00 3.91
3073 6584 9.364653 CCTAACCACCTAGTATACAGATAAAGT 57.635 37.037 5.50 0.00 0.00 2.66
3233 6746 1.989430 ACCAACAGCAAACAAACACG 58.011 45.000 0.00 0.00 0.00 4.49
3234 6747 4.490743 AGTTACCAACAGCAAACAAACAC 58.509 39.130 0.00 0.00 0.00 3.32
3235 6748 4.792521 AGTTACCAACAGCAAACAAACA 57.207 36.364 0.00 0.00 0.00 2.83
3236 6749 5.164954 TCAAGTTACCAACAGCAAACAAAC 58.835 37.500 0.00 0.00 0.00 2.93
3237 6750 5.392767 TCAAGTTACCAACAGCAAACAAA 57.607 34.783 0.00 0.00 0.00 2.83
3238 6751 5.590530 ATCAAGTTACCAACAGCAAACAA 57.409 34.783 0.00 0.00 0.00 2.83
3239 6752 5.825679 AGTATCAAGTTACCAACAGCAAACA 59.174 36.000 0.00 0.00 0.00 2.83
3240 6753 6.313744 AGTATCAAGTTACCAACAGCAAAC 57.686 37.500 0.00 0.00 0.00 2.93
3241 6754 9.899661 ATATAGTATCAAGTTACCAACAGCAAA 57.100 29.630 0.00 0.00 0.00 3.68
3242 6755 9.325198 CATATAGTATCAAGTTACCAACAGCAA 57.675 33.333 0.00 0.00 0.00 3.91
3243 6756 7.441157 GCATATAGTATCAAGTTACCAACAGCA 59.559 37.037 0.00 0.00 0.00 4.41
3244 6757 7.441157 TGCATATAGTATCAAGTTACCAACAGC 59.559 37.037 0.00 0.00 0.00 4.40
3245 6758 8.765219 GTGCATATAGTATCAAGTTACCAACAG 58.235 37.037 0.00 0.00 0.00 3.16
3246 6759 8.482943 AGTGCATATAGTATCAAGTTACCAACA 58.517 33.333 0.00 0.00 0.00 3.33
3247 6760 8.888579 AGTGCATATAGTATCAAGTTACCAAC 57.111 34.615 0.00 0.00 0.00 3.77
3249 6762 9.363401 ACTAGTGCATATAGTATCAAGTTACCA 57.637 33.333 11.64 0.00 31.71 3.25
3253 6766 9.064706 ACGTACTAGTGCATATAGTATCAAGTT 57.935 33.333 19.03 4.41 37.87 2.66
3254 6767 8.618702 ACGTACTAGTGCATATAGTATCAAGT 57.381 34.615 19.03 14.89 37.87 3.16
3256 6769 8.663025 GCTACGTACTAGTGCATATAGTATCAA 58.337 37.037 19.03 10.25 37.87 2.57
3257 6770 7.820872 TGCTACGTACTAGTGCATATAGTATCA 59.179 37.037 19.03 4.11 37.87 2.15
3258 6771 8.194433 TGCTACGTACTAGTGCATATAGTATC 57.806 38.462 19.03 13.59 37.87 2.24
3259 6772 8.734218 ATGCTACGTACTAGTGCATATAGTAT 57.266 34.615 19.03 11.69 41.75 2.12
3260 6773 8.557592 AATGCTACGTACTAGTGCATATAGTA 57.442 34.615 16.67 14.49 42.57 1.82
3261 6774 7.450124 AATGCTACGTACTAGTGCATATAGT 57.550 36.000 16.67 16.10 42.57 2.12
3264 6777 9.706691 AAATAAATGCTACGTACTAGTGCATAT 57.293 29.630 16.67 7.59 42.57 1.78
3266 6779 9.537192 TTAAATAAATGCTACGTACTAGTGCAT 57.463 29.630 11.70 12.08 44.86 3.96
3267 6780 8.929827 TTAAATAAATGCTACGTACTAGTGCA 57.070 30.769 11.70 9.37 38.05 4.57
3272 6785 9.976511 AGCAGATTAAATAAATGCTACGTACTA 57.023 29.630 12.08 0.00 39.20 1.82
3273 6786 8.888579 AGCAGATTAAATAAATGCTACGTACT 57.111 30.769 12.08 0.00 39.20 2.73
3288 6801 9.278978 TGGTCGCATAATAATAAGCAGATTAAA 57.721 29.630 0.00 0.00 0.00 1.52
3289 6802 8.717821 GTGGTCGCATAATAATAAGCAGATTAA 58.282 33.333 0.00 0.00 0.00 1.40
3290 6803 7.333423 GGTGGTCGCATAATAATAAGCAGATTA 59.667 37.037 0.00 0.00 0.00 1.75
3291 6804 6.149474 GGTGGTCGCATAATAATAAGCAGATT 59.851 38.462 0.00 0.00 0.00 2.40
3292 6805 5.643777 GGTGGTCGCATAATAATAAGCAGAT 59.356 40.000 0.00 0.00 0.00 2.90
3293 6806 4.994852 GGTGGTCGCATAATAATAAGCAGA 59.005 41.667 0.00 0.00 0.00 4.26
3294 6807 4.997395 AGGTGGTCGCATAATAATAAGCAG 59.003 41.667 0.00 0.00 0.00 4.24
3295 6808 4.968259 AGGTGGTCGCATAATAATAAGCA 58.032 39.130 0.00 0.00 0.00 3.91
3296 6809 5.238583 AGAGGTGGTCGCATAATAATAAGC 58.761 41.667 0.00 0.00 0.00 3.09
3297 6810 6.692486 AGAGAGGTGGTCGCATAATAATAAG 58.308 40.000 0.00 0.00 0.00 1.73
3298 6811 6.665992 AGAGAGGTGGTCGCATAATAATAA 57.334 37.500 0.00 0.00 0.00 1.40
3299 6812 6.665992 AAGAGAGGTGGTCGCATAATAATA 57.334 37.500 0.00 0.00 0.00 0.98
3300 6813 5.552870 AAGAGAGGTGGTCGCATAATAAT 57.447 39.130 0.00 0.00 0.00 1.28
3301 6814 6.474140 TTAAGAGAGGTGGTCGCATAATAA 57.526 37.500 0.00 0.00 0.00 1.40
3302 6815 6.455647 CATTAAGAGAGGTGGTCGCATAATA 58.544 40.000 0.00 0.00 30.11 0.98
3303 6816 5.300752 CATTAAGAGAGGTGGTCGCATAAT 58.699 41.667 0.00 0.00 31.45 1.28
3304 6817 4.442893 CCATTAAGAGAGGTGGTCGCATAA 60.443 45.833 0.00 0.00 0.00 1.90
3305 6818 3.069586 CCATTAAGAGAGGTGGTCGCATA 59.930 47.826 0.00 0.00 0.00 3.14
3306 6819 2.158900 CCATTAAGAGAGGTGGTCGCAT 60.159 50.000 0.00 0.00 0.00 4.73
3307 6820 1.207089 CCATTAAGAGAGGTGGTCGCA 59.793 52.381 0.00 0.00 0.00 5.10
3308 6821 1.207329 ACCATTAAGAGAGGTGGTCGC 59.793 52.381 0.00 0.00 40.85 5.19
3309 6822 3.611766 AACCATTAAGAGAGGTGGTCG 57.388 47.619 0.00 0.00 43.82 4.79
3310 6823 5.678955 ACTAACCATTAAGAGAGGTGGTC 57.321 43.478 0.00 0.00 43.82 4.02
3311 6824 6.729569 ACTTACTAACCATTAAGAGAGGTGGT 59.270 38.462 0.00 0.00 46.41 4.16
3312 6825 7.184067 ACTTACTAACCATTAAGAGAGGTGG 57.816 40.000 0.00 0.00 35.42 4.61
3313 6826 8.968969 AGTACTTACTAACCATTAAGAGAGGTG 58.031 37.037 0.00 0.00 35.42 4.00
3314 6827 8.968969 CAGTACTTACTAACCATTAAGAGAGGT 58.031 37.037 0.00 0.00 34.13 3.85
3315 6828 8.968969 ACAGTACTTACTAACCATTAAGAGAGG 58.031 37.037 0.00 0.00 34.13 3.69
3323 6836 9.252635 AGCTTAGTACAGTACTTACTAACCATT 57.747 33.333 18.56 11.83 37.19 3.16
3324 6837 8.684520 CAGCTTAGTACAGTACTTACTAACCAT 58.315 37.037 18.56 13.46 37.19 3.55
3325 6838 7.667219 ACAGCTTAGTACAGTACTTACTAACCA 59.333 37.037 18.56 10.90 37.19 3.67
3326 6839 8.049655 ACAGCTTAGTACAGTACTTACTAACC 57.950 38.462 18.56 17.84 37.19 2.85
3329 6842 8.887717 GCTTACAGCTTAGTACAGTACTTACTA 58.112 37.037 18.56 15.27 37.99 1.82
3330 6843 7.148103 GGCTTACAGCTTAGTACAGTACTTACT 60.148 40.741 18.56 10.57 41.99 2.24
3331 6844 6.971756 GGCTTACAGCTTAGTACAGTACTTAC 59.028 42.308 18.56 8.57 41.99 2.34
3332 6845 6.888632 AGGCTTACAGCTTAGTACAGTACTTA 59.111 38.462 18.56 8.84 41.99 2.24
3333 6846 5.715753 AGGCTTACAGCTTAGTACAGTACTT 59.284 40.000 18.56 2.22 41.99 2.24
3334 6847 5.125739 CAGGCTTACAGCTTAGTACAGTACT 59.874 44.000 17.51 17.51 41.99 2.73
3335 6848 5.105837 ACAGGCTTACAGCTTAGTACAGTAC 60.106 44.000 2.05 2.05 41.99 2.73
3336 6849 5.014858 ACAGGCTTACAGCTTAGTACAGTA 58.985 41.667 0.00 0.00 41.99 2.74
3337 6850 3.833070 ACAGGCTTACAGCTTAGTACAGT 59.167 43.478 0.00 0.00 41.99 3.55
3338 6851 4.457834 ACAGGCTTACAGCTTAGTACAG 57.542 45.455 0.00 0.00 41.99 2.74
3339 6852 4.884668 AACAGGCTTACAGCTTAGTACA 57.115 40.909 0.00 0.00 41.99 2.90
3340 6853 7.010275 GTGAATAACAGGCTTACAGCTTAGTAC 59.990 40.741 0.00 0.00 41.99 2.73
3341 6854 7.039882 GTGAATAACAGGCTTACAGCTTAGTA 58.960 38.462 0.00 0.00 41.99 1.82
3342 6855 5.875359 GTGAATAACAGGCTTACAGCTTAGT 59.125 40.000 0.00 0.00 41.99 2.24
3343 6856 5.874810 TGTGAATAACAGGCTTACAGCTTAG 59.125 40.000 0.00 0.00 36.07 2.18
3344 6857 5.800296 TGTGAATAACAGGCTTACAGCTTA 58.200 37.500 0.00 0.00 36.07 3.09
3345 6858 4.651778 TGTGAATAACAGGCTTACAGCTT 58.348 39.130 0.00 0.00 36.07 3.74
3346 6859 4.286297 TGTGAATAACAGGCTTACAGCT 57.714 40.909 0.00 0.00 36.07 4.24
3347 6860 4.913376 CATGTGAATAACAGGCTTACAGC 58.087 43.478 0.00 0.00 43.64 4.40
3363 6876 5.857092 ACGGAGTTGAACACTGCATGTGA 62.857 47.826 19.01 1.74 44.90 3.58
3364 6877 3.634502 ACGGAGTTGAACACTGCATGTG 61.635 50.000 12.81 12.81 46.87 3.21
3365 6878 1.229428 CGGAGTTGAACACTGCATGT 58.771 50.000 0.00 0.00 44.09 3.21
3366 6879 1.229428 ACGGAGTTGAACACTGCATG 58.771 50.000 1.40 0.00 44.09 4.06
3367 6880 3.706055 ACGGAGTTGAACACTGCAT 57.294 47.368 1.40 0.00 44.09 3.96
3374 6887 5.219540 GCGGTTACGTAACGGAGTTGAAC 62.220 52.174 36.01 19.88 46.92 3.18
3375 6888 3.173366 GCGGTTACGTAACGGAGTTGAA 61.173 50.000 36.01 3.28 46.92 2.69
3376 6889 1.665735 GCGGTTACGTAACGGAGTTGA 60.666 52.381 36.01 2.18 46.92 3.18
3377 6890 0.710017 GCGGTTACGTAACGGAGTTG 59.290 55.000 36.01 20.64 46.92 3.16
3379 6892 1.212751 GGCGGTTACGTAACGGAGT 59.787 57.895 36.01 0.00 43.87 3.85
3380 6893 0.109132 AAGGCGGTTACGTAACGGAG 60.109 55.000 36.01 26.55 43.45 4.63
3381 6894 0.109319 GAAGGCGGTTACGTAACGGA 60.109 55.000 36.01 5.44 43.45 4.69
3382 6895 1.078201 GGAAGGCGGTTACGTAACGG 61.078 60.000 30.78 30.78 43.45 4.44
3383 6896 0.109132 AGGAAGGCGGTTACGTAACG 60.109 55.000 27.27 22.84 43.45 3.18
3384 6897 1.353076 CAGGAAGGCGGTTACGTAAC 58.647 55.000 26.72 26.72 43.45 2.50
3385 6898 0.390209 GCAGGAAGGCGGTTACGTAA 60.390 55.000 3.29 3.29 43.45 3.18
3386 6899 1.216178 GCAGGAAGGCGGTTACGTA 59.784 57.895 0.00 0.00 43.45 3.57
3387 6900 2.047560 GCAGGAAGGCGGTTACGT 60.048 61.111 0.00 0.00 43.45 3.57
3388 6901 2.047655 TGCAGGAAGGCGGTTACG 60.048 61.111 0.00 0.00 44.63 3.18
3389 6902 0.741221 CTCTGCAGGAAGGCGGTTAC 60.741 60.000 15.13 0.00 41.03 2.50
3390 6903 0.902984 TCTCTGCAGGAAGGCGGTTA 60.903 55.000 15.13 0.00 41.03 2.85
3391 6904 2.177594 CTCTCTGCAGGAAGGCGGTT 62.178 60.000 15.13 0.00 41.03 4.44
3392 6905 2.604686 TCTCTGCAGGAAGGCGGT 60.605 61.111 15.13 0.00 41.03 5.68
3393 6906 2.186384 CTCTCTGCAGGAAGGCGG 59.814 66.667 15.13 0.00 41.61 6.13
3394 6907 1.141449 CTCTCTCTGCAGGAAGGCG 59.859 63.158 15.13 3.49 36.28 5.52
3395 6908 0.461135 CTCTCTCTCTGCAGGAAGGC 59.539 60.000 15.13 0.00 0.00 4.35
3396 6909 1.113788 CCTCTCTCTCTGCAGGAAGG 58.886 60.000 15.13 9.91 0.00 3.46
3397 6910 1.113788 CCCTCTCTCTCTGCAGGAAG 58.886 60.000 15.13 11.67 0.00 3.46
3398 6911 0.707024 TCCCTCTCTCTCTGCAGGAA 59.293 55.000 15.13 0.95 0.00 3.36
3399 6912 0.258484 CTCCCTCTCTCTCTGCAGGA 59.742 60.000 15.13 9.24 0.00 3.86
3400 6913 0.756442 CCTCCCTCTCTCTCTGCAGG 60.756 65.000 15.13 4.77 0.00 4.85
3401 6914 0.756442 CCCTCCCTCTCTCTCTGCAG 60.756 65.000 7.63 7.63 0.00 4.41
3402 6915 1.217747 TCCCTCCCTCTCTCTCTGCA 61.218 60.000 0.00 0.00 0.00 4.41
3403 6916 0.468029 CTCCCTCCCTCTCTCTCTGC 60.468 65.000 0.00 0.00 0.00 4.26
3404 6917 0.185901 CCTCCCTCCCTCTCTCTCTG 59.814 65.000 0.00 0.00 0.00 3.35
3405 6918 0.998945 CCCTCCCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3406 6919 0.996762 TCCCTCCCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
3407 6920 0.998945 CTCCCTCCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
3408 6921 1.541672 CTCCCTCCCTCCCTCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
3409 6922 2.018086 CCTCCCTCCCTCCCTCTCT 61.018 68.421 0.00 0.00 0.00 3.10
3410 6923 2.612251 CCTCCCTCCCTCCCTCTC 59.388 72.222 0.00 0.00 0.00 3.20
3411 6924 3.039526 CCCTCCCTCCCTCCCTCT 61.040 72.222 0.00 0.00 0.00 3.69
3412 6925 4.890306 GCCCTCCCTCCCTCCCTC 62.890 77.778 0.00 0.00 0.00 4.30
3414 6927 4.523282 ATGCCCTCCCTCCCTCCC 62.523 72.222 0.00 0.00 0.00 4.30
3415 6928 3.174265 CATGCCCTCCCTCCCTCC 61.174 72.222 0.00 0.00 0.00 4.30
3416 6929 3.883549 GCATGCCCTCCCTCCCTC 61.884 72.222 6.36 0.00 0.00 4.30
3419 6932 4.201122 CTGGCATGCCCTCCCTCC 62.201 72.222 33.44 6.83 34.56 4.30
3420 6933 4.891037 GCTGGCATGCCCTCCCTC 62.891 72.222 33.44 12.10 34.56 4.30
3442 6955 3.773630 CAAGTACGCCACGCCACG 61.774 66.667 0.00 0.00 0.00 4.94
3443 6956 4.084888 GCAAGTACGCCACGCCAC 62.085 66.667 0.00 0.00 0.00 5.01
3444 6957 2.508586 TATGCAAGTACGCCACGCCA 62.509 55.000 0.00 0.00 0.00 5.69
3445 6958 1.363145 TTATGCAAGTACGCCACGCC 61.363 55.000 0.00 0.00 0.00 5.68
3446 6959 0.026285 CTTATGCAAGTACGCCACGC 59.974 55.000 0.00 0.00 0.00 5.34
3447 6960 1.355971 ACTTATGCAAGTACGCCACG 58.644 50.000 0.00 0.00 43.33 4.94
3454 6967 2.498481 AGGCGGTGTACTTATGCAAGTA 59.502 45.455 0.00 0.00 43.33 2.24
3455 6968 1.278127 AGGCGGTGTACTTATGCAAGT 59.722 47.619 0.00 0.00 46.77 3.16
3456 6969 2.024176 AGGCGGTGTACTTATGCAAG 57.976 50.000 0.00 0.00 37.81 4.01
3457 6970 2.352388 GAAGGCGGTGTACTTATGCAA 58.648 47.619 0.00 0.00 0.00 4.08
3458 6971 1.406341 GGAAGGCGGTGTACTTATGCA 60.406 52.381 0.00 0.00 0.00 3.96
3459 6972 1.134491 AGGAAGGCGGTGTACTTATGC 60.134 52.381 0.00 0.00 0.00 3.14
3460 6973 2.550978 CAGGAAGGCGGTGTACTTATG 58.449 52.381 0.00 0.00 0.00 1.90
3461 6974 1.134491 GCAGGAAGGCGGTGTACTTAT 60.134 52.381 0.00 0.00 0.00 1.73
3462 6975 0.248289 GCAGGAAGGCGGTGTACTTA 59.752 55.000 0.00 0.00 0.00 2.24
3463 6976 1.003718 GCAGGAAGGCGGTGTACTT 60.004 57.895 0.00 0.00 0.00 2.24
3464 6977 2.172483 CTGCAGGAAGGCGGTGTACT 62.172 60.000 5.57 0.00 35.41 2.73
3465 6978 1.741770 CTGCAGGAAGGCGGTGTAC 60.742 63.158 5.57 0.00 35.41 2.90
3466 6979 1.888436 CTCTGCAGGAAGGCGGTGTA 61.888 60.000 15.13 0.00 41.03 2.90
3467 6980 3.241530 TCTGCAGGAAGGCGGTGT 61.242 61.111 15.13 0.00 41.03 4.16
3468 6981 2.435586 CTCTGCAGGAAGGCGGTG 60.436 66.667 15.13 0.00 41.03 4.94
3469 6982 2.604686 TCTCTGCAGGAAGGCGGT 60.605 61.111 15.13 0.00 41.03 5.68
3470 6983 2.186384 CTCTCTGCAGGAAGGCGG 59.814 66.667 15.13 0.00 41.61 6.13
3471 6984 1.153667 GTCTCTCTGCAGGAAGGCG 60.154 63.158 15.13 0.53 36.28 5.52
3472 6985 0.612744 AAGTCTCTCTGCAGGAAGGC 59.387 55.000 15.13 12.98 0.00 4.35
3473 6986 1.066286 CCAAGTCTCTCTGCAGGAAGG 60.066 57.143 15.13 3.06 0.00 3.46
3474 6987 1.622811 ACCAAGTCTCTCTGCAGGAAG 59.377 52.381 15.13 11.67 0.00 3.46
3475 6988 1.722034 ACCAAGTCTCTCTGCAGGAA 58.278 50.000 15.13 0.95 0.00 3.36
3476 6989 1.620819 GAACCAAGTCTCTCTGCAGGA 59.379 52.381 15.13 9.24 0.00 3.86
3477 6990 1.671261 CGAACCAAGTCTCTCTGCAGG 60.671 57.143 15.13 4.77 0.00 4.85
3478 6991 1.000283 ACGAACCAAGTCTCTCTGCAG 60.000 52.381 7.63 7.63 0.00 4.41
3479 6992 1.000163 GACGAACCAAGTCTCTCTGCA 60.000 52.381 0.00 0.00 35.84 4.41
3480 6993 1.670380 GGACGAACCAAGTCTCTCTGC 60.670 57.143 0.00 0.00 38.58 4.26
3481 6994 1.067495 GGGACGAACCAAGTCTCTCTG 60.067 57.143 0.00 0.00 41.20 3.35
3482 6995 1.258676 GGGACGAACCAAGTCTCTCT 58.741 55.000 0.00 0.00 41.20 3.10
3483 6996 0.246910 GGGGACGAACCAAGTCTCTC 59.753 60.000 0.00 0.00 39.02 3.20
3484 6997 2.363297 GGGGACGAACCAAGTCTCT 58.637 57.895 0.00 0.00 39.02 3.10
3511 7024 4.256278 ATAGGGAGGAGGCCGGGG 62.256 72.222 2.18 0.00 0.00 5.73
3512 7025 2.604991 GATAGGGAGGAGGCCGGG 60.605 72.222 2.18 0.00 0.00 5.73
3513 7026 1.459539 TTGATAGGGAGGAGGCCGG 60.460 63.158 0.00 0.00 0.00 6.13
3514 7027 1.476007 CCTTGATAGGGAGGAGGCCG 61.476 65.000 0.00 0.00 37.94 6.13
3515 7028 0.400670 ACCTTGATAGGGAGGAGGCC 60.401 60.000 0.00 0.00 46.58 5.19
3516 7029 0.761802 CACCTTGATAGGGAGGAGGC 59.238 60.000 0.00 0.00 46.58 4.70
3517 7030 0.761802 GCACCTTGATAGGGAGGAGG 59.238 60.000 0.00 0.00 46.58 4.30
3518 7031 1.691434 GAGCACCTTGATAGGGAGGAG 59.309 57.143 0.00 0.00 46.58 3.69
3519 7032 1.292242 AGAGCACCTTGATAGGGAGGA 59.708 52.381 0.00 0.00 46.58 3.71
3520 7033 1.691434 GAGAGCACCTTGATAGGGAGG 59.309 57.143 0.00 0.00 46.58 4.30
3521 7034 1.691434 GGAGAGCACCTTGATAGGGAG 59.309 57.143 0.00 0.00 46.58 4.30
3522 7035 1.692762 GGGAGAGCACCTTGATAGGGA 60.693 57.143 0.00 0.00 46.58 4.20
3523 7036 0.761802 GGGAGAGCACCTTGATAGGG 59.238 60.000 0.00 0.00 46.58 3.53
3525 7038 2.627699 GAGAGGGAGAGCACCTTGATAG 59.372 54.545 0.00 0.00 38.79 2.08
3526 7039 2.246067 AGAGAGGGAGAGCACCTTGATA 59.754 50.000 0.00 0.00 38.79 2.15
3527 7040 1.008206 AGAGAGGGAGAGCACCTTGAT 59.992 52.381 0.00 0.00 38.79 2.57
3528 7041 0.411452 AGAGAGGGAGAGCACCTTGA 59.589 55.000 0.00 0.00 38.79 3.02
3529 7042 0.823460 GAGAGAGGGAGAGCACCTTG 59.177 60.000 0.00 0.00 38.79 3.61
3530 7043 0.325203 GGAGAGAGGGAGAGCACCTT 60.325 60.000 0.00 0.00 38.79 3.50
3531 7044 1.221213 AGGAGAGAGGGAGAGCACCT 61.221 60.000 0.00 0.00 42.18 4.00
3532 7045 0.755327 GAGGAGAGAGGGAGAGCACC 60.755 65.000 0.00 0.00 0.00 5.01
3533 7046 0.258774 AGAGGAGAGAGGGAGAGCAC 59.741 60.000 0.00 0.00 0.00 4.40
3534 7047 1.006813 AAGAGGAGAGAGGGAGAGCA 58.993 55.000 0.00 0.00 0.00 4.26
3535 7048 1.692411 GAAGAGGAGAGAGGGAGAGC 58.308 60.000 0.00 0.00 0.00 4.09
3536 7049 1.852965 AGGAAGAGGAGAGAGGGAGAG 59.147 57.143 0.00 0.00 0.00 3.20
3537 7050 1.850345 GAGGAAGAGGAGAGAGGGAGA 59.150 57.143 0.00 0.00 0.00 3.71
3538 7051 1.852965 AGAGGAAGAGGAGAGAGGGAG 59.147 57.143 0.00 0.00 0.00 4.30
3539 7052 1.850345 GAGAGGAAGAGGAGAGAGGGA 59.150 57.143 0.00 0.00 0.00 4.20
3540 7053 1.133482 GGAGAGGAAGAGGAGAGAGGG 60.133 61.905 0.00 0.00 0.00 4.30
3541 7054 1.133482 GGGAGAGGAAGAGGAGAGAGG 60.133 61.905 0.00 0.00 0.00 3.69
3542 7055 1.852965 AGGGAGAGGAAGAGGAGAGAG 59.147 57.143 0.00 0.00 0.00 3.20
3543 7056 1.994399 AGGGAGAGGAAGAGGAGAGA 58.006 55.000 0.00 0.00 0.00 3.10
3544 7057 2.244769 AGAAGGGAGAGGAAGAGGAGAG 59.755 54.545 0.00 0.00 0.00 3.20
3545 7058 2.243736 GAGAAGGGAGAGGAAGAGGAGA 59.756 54.545 0.00 0.00 0.00 3.71
3546 7059 2.244769 AGAGAAGGGAGAGGAAGAGGAG 59.755 54.545 0.00 0.00 0.00 3.69
3547 7060 2.243736 GAGAGAAGGGAGAGGAAGAGGA 59.756 54.545 0.00 0.00 0.00 3.71
3548 7061 2.244769 AGAGAGAAGGGAGAGGAAGAGG 59.755 54.545 0.00 0.00 0.00 3.69
3549 7062 3.203040 AGAGAGAGAAGGGAGAGGAAGAG 59.797 52.174 0.00 0.00 0.00 2.85
3550 7063 3.197983 AGAGAGAGAAGGGAGAGGAAGA 58.802 50.000 0.00 0.00 0.00 2.87
3551 7064 3.555966 GAGAGAGAGAAGGGAGAGGAAG 58.444 54.545 0.00 0.00 0.00 3.46
3552 7065 2.243736 GGAGAGAGAGAAGGGAGAGGAA 59.756 54.545 0.00 0.00 0.00 3.36
3553 7066 1.850345 GGAGAGAGAGAAGGGAGAGGA 59.150 57.143 0.00 0.00 0.00 3.71
3554 7067 1.133482 GGGAGAGAGAGAAGGGAGAGG 60.133 61.905 0.00 0.00 0.00 3.69
3555 7068 1.133482 GGGGAGAGAGAGAAGGGAGAG 60.133 61.905 0.00 0.00 0.00 3.20
3556 7069 0.930726 GGGGAGAGAGAGAAGGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
3557 7070 0.105709 GGGGGAGAGAGAGAAGGGAG 60.106 65.000 0.00 0.00 0.00 4.30
3558 7071 0.855855 TGGGGGAGAGAGAGAAGGGA 60.856 60.000 0.00 0.00 0.00 4.20
3559 7072 0.043334 TTGGGGGAGAGAGAGAAGGG 59.957 60.000 0.00 0.00 0.00 3.95
3560 7073 1.199615 GTTGGGGGAGAGAGAGAAGG 58.800 60.000 0.00 0.00 0.00 3.46
3561 7074 1.199615 GGTTGGGGGAGAGAGAGAAG 58.800 60.000 0.00 0.00 0.00 2.85
3562 7075 0.793617 AGGTTGGGGGAGAGAGAGAA 59.206 55.000 0.00 0.00 0.00 2.87
3563 7076 0.041833 CAGGTTGGGGGAGAGAGAGA 59.958 60.000 0.00 0.00 0.00 3.10
3564 7077 0.041833 TCAGGTTGGGGGAGAGAGAG 59.958 60.000 0.00 0.00 0.00 3.20
3565 7078 0.252284 GTCAGGTTGGGGGAGAGAGA 60.252 60.000 0.00 0.00 0.00 3.10
3566 7079 1.608717 CGTCAGGTTGGGGGAGAGAG 61.609 65.000 0.00 0.00 0.00 3.20
3567 7080 1.609501 CGTCAGGTTGGGGGAGAGA 60.610 63.158 0.00 0.00 0.00 3.10
3568 7081 0.613853 TACGTCAGGTTGGGGGAGAG 60.614 60.000 0.00 0.00 0.00 3.20
3569 7082 0.901580 GTACGTCAGGTTGGGGGAGA 60.902 60.000 0.00 0.00 0.00 3.71
3570 7083 1.595357 GTACGTCAGGTTGGGGGAG 59.405 63.158 0.00 0.00 0.00 4.30
3571 7084 1.914764 GGTACGTCAGGTTGGGGGA 60.915 63.158 0.00 0.00 0.00 4.81
3572 7085 1.916777 AGGTACGTCAGGTTGGGGG 60.917 63.158 0.00 0.00 0.00 5.40
3573 7086 1.295423 CAGGTACGTCAGGTTGGGG 59.705 63.158 0.00 0.00 0.00 4.96
3574 7087 1.375523 GCAGGTACGTCAGGTTGGG 60.376 63.158 0.00 0.00 0.00 4.12
3575 7088 0.389948 GAGCAGGTACGTCAGGTTGG 60.390 60.000 0.00 0.00 0.00 3.77
3576 7089 0.389948 GGAGCAGGTACGTCAGGTTG 60.390 60.000 0.00 0.00 0.00 3.77
3577 7090 0.542232 AGGAGCAGGTACGTCAGGTT 60.542 55.000 0.00 0.00 0.00 3.50
3578 7091 0.966370 GAGGAGCAGGTACGTCAGGT 60.966 60.000 0.00 0.00 0.00 4.00
3579 7092 1.810532 GAGGAGCAGGTACGTCAGG 59.189 63.158 0.00 0.00 0.00 3.86
3580 7093 1.025113 TCGAGGAGCAGGTACGTCAG 61.025 60.000 0.00 0.00 0.00 3.51
3581 7094 0.393944 ATCGAGGAGCAGGTACGTCA 60.394 55.000 0.00 0.00 0.00 4.35
3582 7095 0.308376 GATCGAGGAGCAGGTACGTC 59.692 60.000 0.00 0.00 0.00 4.34
3583 7096 1.437772 CGATCGAGGAGCAGGTACGT 61.438 60.000 10.26 0.00 0.00 3.57
3584 7097 1.280142 CGATCGAGGAGCAGGTACG 59.720 63.158 10.26 0.00 0.00 3.67
3585 7098 1.008309 GCGATCGAGGAGCAGGTAC 60.008 63.158 21.57 0.00 0.00 3.34
3586 7099 2.194212 GGCGATCGAGGAGCAGGTA 61.194 63.158 21.57 0.00 0.00 3.08
3587 7100 3.532155 GGCGATCGAGGAGCAGGT 61.532 66.667 21.57 0.00 0.00 4.00
3588 7101 3.496875 CTGGCGATCGAGGAGCAGG 62.497 68.421 21.57 0.00 0.00 4.85
3589 7102 2.027314 CTGGCGATCGAGGAGCAG 59.973 66.667 21.57 0.00 0.00 4.24
3590 7103 3.531207 CCTGGCGATCGAGGAGCA 61.531 66.667 21.57 0.00 0.00 4.26
3591 7104 3.082579 AACCTGGCGATCGAGGAGC 62.083 63.158 25.08 5.49 33.16 4.70
3592 7105 1.227089 CAACCTGGCGATCGAGGAG 60.227 63.158 25.08 14.81 33.16 3.69
3593 7106 2.892640 CAACCTGGCGATCGAGGA 59.107 61.111 25.08 5.55 33.16 3.71
3594 7107 2.859273 AAGCAACCTGGCGATCGAGG 62.859 60.000 21.57 19.82 39.27 4.63
3595 7108 1.448540 AAGCAACCTGGCGATCGAG 60.449 57.895 21.57 8.18 39.27 4.04
3596 7109 1.741401 CAAGCAACCTGGCGATCGA 60.741 57.895 21.57 0.00 39.27 3.59
3597 7110 2.787249 CAAGCAACCTGGCGATCG 59.213 61.111 11.69 11.69 39.27 3.69
3598 7111 1.986575 GAGCAAGCAACCTGGCGATC 61.987 60.000 0.00 0.00 43.13 3.69
3599 7112 2.034687 AGCAAGCAACCTGGCGAT 59.965 55.556 0.00 0.00 43.13 4.58
3600 7113 2.669569 GAGCAAGCAACCTGGCGA 60.670 61.111 0.00 0.00 43.13 5.54
3601 7114 2.554636 TTGAGCAAGCAACCTGGCG 61.555 57.895 0.00 0.00 43.13 5.69
3602 7115 1.006922 GTTGAGCAAGCAACCTGGC 60.007 57.895 0.00 0.00 41.69 4.85
3607 7120 2.352127 GGAATGGAGTTGAGCAAGCAAC 60.352 50.000 8.51 8.51 46.47 4.17
3608 7121 1.888512 GGAATGGAGTTGAGCAAGCAA 59.111 47.619 0.00 0.00 0.00 3.91
3609 7122 1.538047 GGAATGGAGTTGAGCAAGCA 58.462 50.000 0.00 0.00 0.00 3.91
3610 7123 0.813821 GGGAATGGAGTTGAGCAAGC 59.186 55.000 0.00 0.00 0.00 4.01
3611 7124 1.089920 CGGGAATGGAGTTGAGCAAG 58.910 55.000 0.00 0.00 0.00 4.01
3612 7125 0.690192 TCGGGAATGGAGTTGAGCAA 59.310 50.000 0.00 0.00 0.00 3.91
3613 7126 0.036388 GTCGGGAATGGAGTTGAGCA 60.036 55.000 0.00 0.00 0.00 4.26
3614 7127 0.744771 GGTCGGGAATGGAGTTGAGC 60.745 60.000 0.00 0.00 0.00 4.26
3615 7128 0.107654 GGGTCGGGAATGGAGTTGAG 60.108 60.000 0.00 0.00 0.00 3.02
3616 7129 0.838554 TGGGTCGGGAATGGAGTTGA 60.839 55.000 0.00 0.00 0.00 3.18
3617 7130 0.392998 CTGGGTCGGGAATGGAGTTG 60.393 60.000 0.00 0.00 0.00 3.16
3618 7131 1.562672 CCTGGGTCGGGAATGGAGTT 61.563 60.000 0.00 0.00 29.82 3.01
3619 7132 1.995626 CCTGGGTCGGGAATGGAGT 60.996 63.158 0.00 0.00 29.82 3.85
3620 7133 2.911143 CCTGGGTCGGGAATGGAG 59.089 66.667 0.00 0.00 29.82 3.86
3621 7134 3.407967 GCCTGGGTCGGGAATGGA 61.408 66.667 0.00 0.00 29.82 3.41
3622 7135 4.856801 CGCCTGGGTCGGGAATGG 62.857 72.222 0.00 0.00 29.82 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.