Multiple sequence alignment - TraesCS1D01G358600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G358600 chr1D 100.000 6243 0 0 1 6243 442370159 442376401 0.000000e+00 11529.0
1 TraesCS1D01G358600 chr1D 96.296 81 1 1 3626 3704 479730168 479730248 1.410000e-26 132.0
2 TraesCS1D01G358600 chr1D 91.209 91 7 1 3999 4088 201495071 201494981 8.500000e-24 122.0
3 TraesCS1D01G358600 chr1D 90.805 87 7 1 4000 4085 201494983 201495069 1.420000e-21 115.0
4 TraesCS1D01G358600 chr1B 94.050 3647 164 29 1 3624 600969517 600973133 0.000000e+00 5483.0
5 TraesCS1D01G358600 chr1B 91.611 1645 64 25 3700 5285 600973126 600974755 0.000000e+00 2206.0
6 TraesCS1D01G358600 chr1B 93.652 961 26 9 5283 6243 600974858 600975783 0.000000e+00 1404.0
7 TraesCS1D01G358600 chr1B 91.209 91 7 1 3999 4088 289087380 289087290 8.500000e-24 122.0
8 TraesCS1D01G358600 chr1B 92.941 85 5 1 3626 3709 327481217 327481301 8.500000e-24 122.0
9 TraesCS1D01G358600 chr1B 93.023 86 3 2 3626 3709 392878984 392878900 8.500000e-24 122.0
10 TraesCS1D01G358600 chr1A 95.847 3251 118 8 390 3624 536349439 536346190 0.000000e+00 5240.0
11 TraesCS1D01G358600 chr1A 96.055 1749 52 10 4496 6243 536345214 536343482 0.000000e+00 2832.0
12 TraesCS1D01G358600 chr1A 89.116 441 22 9 4080 4499 536345885 536345450 5.540000e-145 525.0
13 TraesCS1D01G358600 chr1A 96.382 304 4 2 3708 4011 536346187 536345891 1.560000e-135 494.0
14 TraesCS1D01G358600 chr1A 83.969 262 36 4 4574 4832 169552703 169552445 4.830000e-61 246.0
15 TraesCS1D01G358600 chr1A 82.890 263 40 5 4574 4833 262601975 262602235 1.350000e-56 231.0
16 TraesCS1D01G358600 chr1A 77.778 216 30 8 5486 5687 536343633 536343422 3.950000e-22 117.0
17 TraesCS1D01G358600 chr1A 91.667 84 6 1 3999 4081 255486762 255486679 1.420000e-21 115.0
18 TraesCS1D01G358600 chr6D 84.871 271 33 7 4568 4833 472139049 472139316 3.710000e-67 267.0
19 TraesCS1D01G358600 chr6D 83.774 265 38 3 4572 4833 128074557 128074819 4.830000e-61 246.0
20 TraesCS1D01G358600 chr6D 85.849 106 11 3 3981 4085 441809293 441809395 6.620000e-20 110.0
21 TraesCS1D01G358600 chr6D 79.348 92 17 2 243 332 436712593 436712502 5.220000e-06 63.9
22 TraesCS1D01G358600 chr5D 84.962 266 35 4 4574 4836 546697715 546697978 1.330000e-66 265.0
23 TraesCS1D01G358600 chr5D 90.805 87 7 1 4001 4086 549028720 549028806 1.420000e-21 115.0
24 TraesCS1D01G358600 chr6A 84.411 263 38 3 4574 4833 456684867 456684605 8.030000e-64 255.0
25 TraesCS1D01G358600 chr6A 93.023 86 3 2 3626 3709 615393794 615393878 8.500000e-24 122.0
26 TraesCS1D01G358600 chr6A 86.792 106 12 2 3981 4085 591088363 591088467 3.950000e-22 117.0
27 TraesCS1D01G358600 chr2A 82.890 263 40 3 4573 4832 86652716 86652456 1.350000e-56 231.0
28 TraesCS1D01G358600 chr2B 79.808 208 33 9 2 201 410939029 410939235 6.520000e-30 143.0
29 TraesCS1D01G358600 chr7B 80.198 202 28 9 1 192 453040826 453040627 2.350000e-29 141.0
30 TraesCS1D01G358600 chr7A 77.966 236 39 9 1 227 144332151 144332382 1.090000e-27 135.0
31 TraesCS1D01G358600 chr3D 97.403 77 2 0 3627 3703 105212660 105212736 1.410000e-26 132.0
32 TraesCS1D01G358600 chr3D 92.391 92 4 3 3995 4085 373325062 373324973 1.830000e-25 128.0
33 TraesCS1D01G358600 chr3D 93.902 82 4 1 3626 3706 525726602 525726521 8.500000e-24 122.0
34 TraesCS1D01G358600 chr3D 84.706 85 10 3 3 85 4130693 4130776 1.440000e-11 82.4
35 TraesCS1D01G358600 chr4B 97.403 77 1 1 3626 3701 172508730 172508806 5.080000e-26 130.0
36 TraesCS1D01G358600 chr5B 93.103 87 5 1 4001 4086 700594942 700595028 6.570000e-25 126.0
37 TraesCS1D01G358600 chr5B 77.155 232 39 8 1 225 658182165 658181941 8.500000e-24 122.0
38 TraesCS1D01G358600 chr4A 96.154 78 1 1 3626 3701 18683387 18683310 6.570000e-25 126.0
39 TraesCS1D01G358600 chr4A 92.941 85 4 1 3626 3708 18683311 18683395 8.500000e-24 122.0
40 TraesCS1D01G358600 chr2D 95.238 42 2 0 1 42 358766198 358766239 4.040000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G358600 chr1D 442370159 442376401 6242 False 11529.0 11529 100.000000 1 6243 1 chr1D.!!$F2 6242
1 TraesCS1D01G358600 chr1B 600969517 600975783 6266 False 3031.0 5483 93.104333 1 6243 3 chr1B.!!$F2 6242
2 TraesCS1D01G358600 chr1A 536343422 536349439 6017 True 1841.6 5240 91.035600 390 6243 5 chr1A.!!$R3 5853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.035439 AGGTTGGCGTCATCCGATTT 60.035 50.0 11.33 0.0 39.56 2.17 F
1381 1398 0.035317 CTGTGTTGTGGAGGCTGCTA 59.965 55.0 7.74 0.0 0.00 3.49 F
1749 1766 0.108138 GGGATCTGGTCACCGTTCTG 60.108 60.0 0.00 0.0 0.00 3.02 F
3635 3662 0.333993 TAGTTAGCCACTCCCTCCGT 59.666 55.0 0.00 0.0 36.88 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 1724 0.676782 CCCTTAAACTGTGGCCCGAG 60.677 60.0 0.0 0.0 0.00 4.63 R
2308 2325 0.900182 TGATCAGGACGCAGACCAGT 60.900 55.0 0.0 0.0 46.86 4.00 R
3685 3712 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.0 0.0 0.0 0.00 4.37 R
5552 5980 0.039708 GCAACTGCTTGCCTTGACTC 60.040 55.0 0.0 0.0 46.27 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.474570 GAGAGAGGGCGCCATGGT 61.475 66.667 30.85 11.10 0.00 3.55
46 47 2.100631 GTGAGGTTGGCGTCATCCG 61.101 63.158 11.33 0.00 40.90 4.18
50 51 0.035439 AGGTTGGCGTCATCCGATTT 60.035 50.000 11.33 0.00 39.56 2.17
58 59 3.564225 GGCGTCATCCGATTTTAAAGGAT 59.436 43.478 2.39 2.39 44.91 3.24
62 63 5.989777 CGTCATCCGATTTTAAAGGATAGGT 59.010 40.000 7.05 0.00 42.40 3.08
63 64 6.482308 CGTCATCCGATTTTAAAGGATAGGTT 59.518 38.462 7.05 0.00 42.40 3.50
64 65 7.307219 CGTCATCCGATTTTAAAGGATAGGTTC 60.307 40.741 7.05 0.00 42.40 3.62
65 66 6.996282 TCATCCGATTTTAAAGGATAGGTTCC 59.004 38.462 7.05 0.00 42.40 3.62
78 80 2.568623 AGGTTCCAGCGAGAAATGTT 57.431 45.000 0.00 0.00 0.00 2.71
79 81 2.427506 AGGTTCCAGCGAGAAATGTTC 58.572 47.619 0.00 0.00 0.00 3.18
80 82 1.468914 GGTTCCAGCGAGAAATGTTCC 59.531 52.381 0.00 0.00 0.00 3.62
107 109 1.590147 GGGAAACCGAGCGAGAAGA 59.410 57.895 0.00 0.00 43.64 2.87
108 110 0.037605 GGGAAACCGAGCGAGAAGAA 60.038 55.000 0.00 0.00 43.64 2.52
112 114 2.814280 AACCGAGCGAGAAGAAAAGA 57.186 45.000 0.00 0.00 0.00 2.52
122 124 3.058155 CGAGAAGAAAAGAGTCCGACAGA 60.058 47.826 0.40 0.00 0.00 3.41
123 125 4.556898 CGAGAAGAAAAGAGTCCGACAGAA 60.557 45.833 0.40 0.00 0.00 3.02
124 126 5.277857 AGAAGAAAAGAGTCCGACAGAAA 57.722 39.130 0.40 0.00 0.00 2.52
132 134 6.846325 AAGAGTCCGACAGAAAAAGTAAAG 57.154 37.500 0.40 0.00 0.00 1.85
133 135 6.158023 AGAGTCCGACAGAAAAAGTAAAGA 57.842 37.500 0.40 0.00 0.00 2.52
135 137 5.915175 AGTCCGACAGAAAAAGTAAAGAGT 58.085 37.500 0.40 0.00 0.00 3.24
136 138 5.753921 AGTCCGACAGAAAAAGTAAAGAGTG 59.246 40.000 0.40 0.00 0.00 3.51
137 139 4.510340 TCCGACAGAAAAAGTAAAGAGTGC 59.490 41.667 0.00 0.00 0.00 4.40
138 140 4.446234 CGACAGAAAAAGTAAAGAGTGCG 58.554 43.478 0.00 0.00 0.00 5.34
139 141 4.025979 CGACAGAAAAAGTAAAGAGTGCGT 60.026 41.667 0.00 0.00 0.00 5.24
140 142 5.156804 ACAGAAAAAGTAAAGAGTGCGTG 57.843 39.130 0.00 0.00 0.00 5.34
141 143 4.035208 ACAGAAAAAGTAAAGAGTGCGTGG 59.965 41.667 0.00 0.00 0.00 4.94
143 145 2.922740 AAAGTAAAGAGTGCGTGGGA 57.077 45.000 0.00 0.00 0.00 4.37
144 146 3.418684 AAAGTAAAGAGTGCGTGGGAT 57.581 42.857 0.00 0.00 0.00 3.85
150 157 0.606401 AGAGTGCGTGGGATGGTTTG 60.606 55.000 0.00 0.00 0.00 2.93
152 159 0.467290 AGTGCGTGGGATGGTTTGTT 60.467 50.000 0.00 0.00 0.00 2.83
158 165 1.765904 GTGGGATGGTTTGTTTTGGGT 59.234 47.619 0.00 0.00 0.00 4.51
166 173 3.385111 TGGTTTGTTTTGGGTCCATGTAC 59.615 43.478 0.00 0.00 0.00 2.90
167 174 3.639561 GGTTTGTTTTGGGTCCATGTACT 59.360 43.478 0.00 0.00 0.00 2.73
169 176 4.927978 TTGTTTTGGGTCCATGTACTTG 57.072 40.909 1.78 1.78 0.00 3.16
176 185 5.353394 TGGGTCCATGTACTTGAGATAAC 57.647 43.478 10.20 1.42 0.00 1.89
192 201 9.952188 CTTGAGATAACATTACAGATAGTTCGA 57.048 33.333 0.00 0.00 0.00 3.71
202 211 4.056050 ACAGATAGTTCGAACAACCACAC 58.944 43.478 28.78 12.71 0.00 3.82
207 216 2.681344 AGTTCGAACAACCACACTTTCC 59.319 45.455 28.78 0.00 0.00 3.13
208 217 1.292061 TCGAACAACCACACTTTCCG 58.708 50.000 0.00 0.00 0.00 4.30
209 218 1.011333 CGAACAACCACACTTTCCGT 58.989 50.000 0.00 0.00 0.00 4.69
224 233 2.041922 CGTGAGGGGAGGGGATCA 60.042 66.667 0.00 0.00 0.00 2.92
225 234 2.136878 CGTGAGGGGAGGGGATCAG 61.137 68.421 0.00 0.00 0.00 2.90
226 235 1.768077 GTGAGGGGAGGGGATCAGG 60.768 68.421 0.00 0.00 0.00 3.86
227 236 1.946707 TGAGGGGAGGGGATCAGGA 60.947 63.158 0.00 0.00 0.00 3.86
228 237 1.460497 GAGGGGAGGGGATCAGGAC 60.460 68.421 0.00 0.00 0.00 3.85
229 238 2.844839 GGGGAGGGGATCAGGACG 60.845 72.222 0.00 0.00 0.00 4.79
230 239 2.844839 GGGAGGGGATCAGGACGG 60.845 72.222 0.00 0.00 0.00 4.79
231 240 2.282446 GGAGGGGATCAGGACGGA 59.718 66.667 0.00 0.00 0.00 4.69
232 241 1.152226 GGAGGGGATCAGGACGGAT 60.152 63.158 0.00 0.00 0.00 4.18
233 242 0.114560 GGAGGGGATCAGGACGGATA 59.885 60.000 0.00 0.00 0.00 2.59
234 243 1.551452 GAGGGGATCAGGACGGATAG 58.449 60.000 0.00 0.00 0.00 2.08
235 244 0.861155 AGGGGATCAGGACGGATAGT 59.139 55.000 0.00 0.00 0.00 2.12
236 245 1.220750 AGGGGATCAGGACGGATAGTT 59.779 52.381 0.00 0.00 0.00 2.24
250 259 4.469945 ACGGATAGTTGGGATGAGAAAGAA 59.530 41.667 0.00 0.00 0.00 2.52
255 264 7.012799 GGATAGTTGGGATGAGAAAGAAATGAC 59.987 40.741 0.00 0.00 0.00 3.06
259 268 5.644188 TGGGATGAGAAAGAAATGACCTTT 58.356 37.500 0.00 0.00 36.63 3.11
260 269 5.477984 TGGGATGAGAAAGAAATGACCTTTG 59.522 40.000 0.00 0.00 34.33 2.77
262 271 6.379417 GGGATGAGAAAGAAATGACCTTTGAT 59.621 38.462 0.00 0.00 34.33 2.57
274 283 9.480053 GAAATGACCTTTGATTTTGAAGATCAA 57.520 29.630 7.00 7.00 40.65 2.57
304 315 9.462174 TCATTTGTTTGATTCAATTATATCCGC 57.538 29.630 0.00 0.00 0.00 5.54
312 323 6.923508 TGATTCAATTATATCCGCTATAGCCG 59.076 38.462 19.00 12.70 37.91 5.52
313 324 5.196341 TCAATTATATCCGCTATAGCCGG 57.804 43.478 19.00 20.84 37.91 6.13
314 325 4.647853 TCAATTATATCCGCTATAGCCGGT 59.352 41.667 24.99 16.57 37.91 5.28
315 326 5.829391 TCAATTATATCCGCTATAGCCGGTA 59.171 40.000 24.99 17.90 37.91 4.02
316 327 5.961396 ATTATATCCGCTATAGCCGGTAG 57.039 43.478 24.99 11.13 37.91 3.18
317 328 1.386533 TATCCGCTATAGCCGGTAGC 58.613 55.000 24.99 11.58 40.83 3.58
326 337 3.876198 GCCGGTAGCAATGCACGG 61.876 66.667 24.34 24.34 42.30 4.94
334 345 2.176546 CAATGCACGGGCGTTCTG 59.823 61.111 15.71 0.68 46.01 3.02
344 355 2.231964 ACGGGCGTTCTGATAGTAAACA 59.768 45.455 0.00 0.00 0.00 2.83
347 358 3.063588 GGGCGTTCTGATAGTAAACAAGC 59.936 47.826 0.00 0.00 0.00 4.01
363 374 0.037326 AAGCAAGATCGTTCGAGGCA 60.037 50.000 0.80 0.00 0.00 4.75
472 483 2.808543 CCAACAGTTCTTACAGCCAGTC 59.191 50.000 0.00 0.00 0.00 3.51
963 980 2.590114 GGACACCTACGCCAAGGGT 61.590 63.158 4.15 0.00 41.32 4.34
1044 1061 2.281139 TGCACCGTCATTTCCGCA 60.281 55.556 0.00 0.00 0.00 5.69
1212 1229 2.019984 GGATTGGTGATCAAGTCTGGC 58.980 52.381 0.00 0.00 38.95 4.85
1248 1265 3.492482 GGTTTGTGGAGGTTGGATTTGTG 60.492 47.826 0.00 0.00 0.00 3.33
1291 1308 4.517285 CAATGTAGGCTGCTCTTTTAGGA 58.483 43.478 3.77 0.00 0.00 2.94
1381 1398 0.035317 CTGTGTTGTGGAGGCTGCTA 59.965 55.000 7.74 0.00 0.00 3.49
1428 1445 1.755959 GGCATTGCAATGGATGTGGTA 59.244 47.619 34.23 0.00 36.90 3.25
1482 1499 5.596836 TTCTTGGAATGTTTGAGCTTTGT 57.403 34.783 0.00 0.00 0.00 2.83
1494 1511 5.689383 TTGAGCTTTGTAGGAATGTTCAC 57.311 39.130 0.00 0.00 0.00 3.18
1506 1523 4.083324 AGGAATGTTCACGTTTATGCACTG 60.083 41.667 0.00 0.00 0.00 3.66
1537 1554 5.105756 GGGTTGGGAAGAGATTGTTATGTTG 60.106 44.000 0.00 0.00 0.00 3.33
1551 1568 2.175878 ATGTTGTGTCTGAGCTGGTC 57.824 50.000 0.00 0.00 0.00 4.02
1668 1685 4.012374 CAGGCTATCACTCAAATGGTTGT 58.988 43.478 0.00 0.00 36.07 3.32
1692 1709 3.118811 AGGATGAAGCAGTGAAGCTAGTC 60.119 47.826 0.00 0.00 45.89 2.59
1695 1712 2.095008 TGAAGCAGTGAAGCTAGTCGAG 60.095 50.000 0.00 0.00 45.89 4.04
1710 1727 2.159310 AGTCGAGCATCTTCTTTCCTCG 60.159 50.000 0.00 0.00 44.76 4.63
1715 1732 0.253044 CATCTTCTTTCCTCGGGCCA 59.747 55.000 4.39 0.00 0.00 5.36
1749 1766 0.108138 GGGATCTGGTCACCGTTCTG 60.108 60.000 0.00 0.00 0.00 3.02
1753 1770 2.225382 TCTGGTCACCGTTCTGGATA 57.775 50.000 0.00 0.00 42.00 2.59
1755 1772 2.693591 TCTGGTCACCGTTCTGGATATC 59.306 50.000 0.00 0.00 42.00 1.63
1785 1802 5.290493 TCAAAGAGGAAGTTCAGCAAGTA 57.710 39.130 5.01 0.00 0.00 2.24
1816 1833 9.118300 CTTATACATTGAAATCTGGAAGCTTCT 57.882 33.333 25.05 4.81 0.00 2.85
1817 1834 5.893897 ACATTGAAATCTGGAAGCTTCTC 57.106 39.130 25.05 15.71 0.00 2.87
1915 1932 5.246307 TCAGAACTTCAGAGTCACGAGATA 58.754 41.667 0.00 0.00 34.21 1.98
2091 2108 4.237843 TGGATAAGGGAGAGCAGATTCAT 58.762 43.478 0.00 0.00 0.00 2.57
2119 2136 6.069673 TCTGGCTCTTAAAGTTGGGATATTGA 60.070 38.462 0.00 0.00 0.00 2.57
2139 2156 3.882288 TGATTGCTGACTTTGTTAGTGCA 59.118 39.130 0.00 0.00 37.17 4.57
2157 2174 3.871594 GTGCATCCCTAGTGAACATGTAC 59.128 47.826 0.00 0.00 0.00 2.90
2172 2189 2.627863 TGTACGCAAAATGCCATCAC 57.372 45.000 0.00 0.00 41.12 3.06
2176 2193 2.339418 ACGCAAAATGCCATCACATTG 58.661 42.857 0.00 0.00 41.12 2.82
2191 2208 1.202734 ACATTGAGTGTGCTGCTGAGT 60.203 47.619 0.00 0.00 40.28 3.41
2193 2210 2.908688 TTGAGTGTGCTGCTGAGTTA 57.091 45.000 0.00 0.00 0.00 2.24
2196 2213 3.743521 TGAGTGTGCTGCTGAGTTATTT 58.256 40.909 0.00 0.00 0.00 1.40
2207 2224 3.568007 GCTGAGTTATTTTCCCACACACA 59.432 43.478 0.00 0.00 0.00 3.72
2208 2225 4.320494 GCTGAGTTATTTTCCCACACACAG 60.320 45.833 0.00 0.00 0.00 3.66
2214 2231 2.516227 TTTCCCACACACAGTTTCCA 57.484 45.000 0.00 0.00 0.00 3.53
2247 2264 5.874810 AGTTTTAACTAATGCGATGCTCTCA 59.125 36.000 0.00 0.00 37.52 3.27
2308 2325 5.600696 TGCTCTTCTGCAATGAATATCGTA 58.399 37.500 0.00 0.00 40.29 3.43
2475 2492 7.095439 GCTATCATAGACCTTTATGTCAAGTGC 60.095 40.741 0.00 0.00 37.73 4.40
2577 2594 7.217200 TGGGTTATATTCAGAACAGATGTAGC 58.783 38.462 0.00 0.00 0.00 3.58
2628 2645 2.562912 CACAGTGGATTGCGTGCC 59.437 61.111 0.00 0.00 0.00 5.01
2782 2799 9.832445 TTGTAGGAATGTATAAAAGATCTGACC 57.168 33.333 0.00 0.00 0.00 4.02
2934 2951 6.305693 ACGTTGGAAGAAGAGAAAAATCAG 57.694 37.500 0.00 0.00 0.00 2.90
3111 3128 7.689446 TCTAGATACACGATATCAGGGAAAG 57.311 40.000 3.12 0.00 0.00 2.62
3129 3146 4.263068 GGAAAGAGAGGTGGATCTCACAAA 60.263 45.833 13.95 0.00 46.81 2.83
3148 3165 7.872881 TCACAAACTGTTTAACTTGTTACACA 58.127 30.769 5.31 10.72 29.70 3.72
3166 3183 2.169144 CACATGGACAGCACTGGATCTA 59.831 50.000 2.21 0.00 34.19 1.98
3184 3201 6.608405 TGGATCTAACCAATTCGTCCTAGTTA 59.392 38.462 0.00 0.00 36.96 2.24
3210 3227 8.442632 TCTTCATTGACAATAGCCTTAAGATG 57.557 34.615 3.36 0.00 0.00 2.90
3211 3228 8.267183 TCTTCATTGACAATAGCCTTAAGATGA 58.733 33.333 3.36 0.00 0.00 2.92
3332 3349 3.356529 ACTGGCCCTGTTATTTCTCAG 57.643 47.619 0.00 0.00 0.00 3.35
3478 3504 4.158209 CACACCATATGCCATGAAAACTCA 59.842 41.667 0.00 0.00 0.00 3.41
3598 3625 9.060347 GCATGGAAGAATAGATCAAGAATGTTA 57.940 33.333 0.00 0.00 0.00 2.41
3623 3650 4.868734 ACAGGTTAGCACGAAATAGTTAGC 59.131 41.667 0.00 0.00 0.00 3.09
3624 3651 4.270325 CAGGTTAGCACGAAATAGTTAGCC 59.730 45.833 0.00 0.00 0.00 3.93
3625 3652 4.081309 AGGTTAGCACGAAATAGTTAGCCA 60.081 41.667 0.00 0.00 0.00 4.75
3626 3653 4.033702 GGTTAGCACGAAATAGTTAGCCAC 59.966 45.833 0.00 0.00 0.00 5.01
3627 3654 3.611766 AGCACGAAATAGTTAGCCACT 57.388 42.857 0.00 0.00 39.87 4.00
3628 3655 3.522553 AGCACGAAATAGTTAGCCACTC 58.477 45.455 0.00 0.00 36.88 3.51
3629 3656 2.608090 GCACGAAATAGTTAGCCACTCC 59.392 50.000 0.00 0.00 36.88 3.85
3630 3657 3.195661 CACGAAATAGTTAGCCACTCCC 58.804 50.000 0.00 0.00 36.88 4.30
3631 3658 3.105283 ACGAAATAGTTAGCCACTCCCT 58.895 45.455 0.00 0.00 36.88 4.20
3632 3659 3.132467 ACGAAATAGTTAGCCACTCCCTC 59.868 47.826 0.00 0.00 36.88 4.30
3633 3660 3.492829 CGAAATAGTTAGCCACTCCCTCC 60.493 52.174 0.00 0.00 36.88 4.30
3634 3661 1.705873 ATAGTTAGCCACTCCCTCCG 58.294 55.000 0.00 0.00 36.88 4.63
3635 3662 0.333993 TAGTTAGCCACTCCCTCCGT 59.666 55.000 0.00 0.00 36.88 4.69
3636 3663 0.971447 AGTTAGCCACTCCCTCCGTC 60.971 60.000 0.00 0.00 0.00 4.79
3637 3664 1.684734 TTAGCCACTCCCTCCGTCC 60.685 63.158 0.00 0.00 0.00 4.79
3638 3665 3.674050 TAGCCACTCCCTCCGTCCC 62.674 68.421 0.00 0.00 0.00 4.46
3640 3667 2.365635 CCACTCCCTCCGTCCCAT 60.366 66.667 0.00 0.00 0.00 4.00
3641 3668 1.075525 CCACTCCCTCCGTCCCATA 60.076 63.158 0.00 0.00 0.00 2.74
3642 3669 0.689745 CCACTCCCTCCGTCCCATAA 60.690 60.000 0.00 0.00 0.00 1.90
3643 3670 1.424638 CACTCCCTCCGTCCCATAAT 58.575 55.000 0.00 0.00 0.00 1.28
3644 3671 2.605257 CACTCCCTCCGTCCCATAATA 58.395 52.381 0.00 0.00 0.00 0.98
3645 3672 3.173965 CACTCCCTCCGTCCCATAATAT 58.826 50.000 0.00 0.00 0.00 1.28
3646 3673 4.350245 CACTCCCTCCGTCCCATAATATA 58.650 47.826 0.00 0.00 0.00 0.86
3647 3674 4.775780 CACTCCCTCCGTCCCATAATATAA 59.224 45.833 0.00 0.00 0.00 0.98
3648 3675 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3649 3676 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3650 3677 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3651 3678 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
3652 3679 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
3653 3680 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
3654 3681 6.014499 CCTCCGTCCCATAATATAAGAGTGTT 60.014 42.308 0.00 0.00 0.00 3.32
3655 3682 7.369551 TCCGTCCCATAATATAAGAGTGTTT 57.630 36.000 0.00 0.00 0.00 2.83
3656 3683 7.798071 TCCGTCCCATAATATAAGAGTGTTTT 58.202 34.615 0.00 0.00 0.00 2.43
3657 3684 8.269317 TCCGTCCCATAATATAAGAGTGTTTTT 58.731 33.333 0.00 0.00 0.00 1.94
3658 3685 8.342634 CCGTCCCATAATATAAGAGTGTTTTTG 58.657 37.037 0.00 0.00 0.00 2.44
3659 3686 9.104965 CGTCCCATAATATAAGAGTGTTTTTGA 57.895 33.333 0.00 0.00 0.00 2.69
3661 3688 9.967451 TCCCATAATATAAGAGTGTTTTTGACA 57.033 29.630 0.00 0.00 35.42 3.58
3677 3704 2.627945 TGACACTGTCAAAAACGCTCT 58.372 42.857 9.54 0.00 39.78 4.09
3678 3705 3.006940 TGACACTGTCAAAAACGCTCTT 58.993 40.909 9.54 0.00 39.78 2.85
3679 3706 4.185394 TGACACTGTCAAAAACGCTCTTA 58.815 39.130 9.54 0.00 39.78 2.10
3680 3707 4.814234 TGACACTGTCAAAAACGCTCTTAT 59.186 37.500 9.54 0.00 39.78 1.73
3681 3708 5.986741 TGACACTGTCAAAAACGCTCTTATA 59.013 36.000 9.54 0.00 39.78 0.98
3682 3709 6.649141 TGACACTGTCAAAAACGCTCTTATAT 59.351 34.615 9.54 0.00 39.78 0.86
3683 3710 7.172532 TGACACTGTCAAAAACGCTCTTATATT 59.827 33.333 9.54 0.00 39.78 1.28
3684 3711 8.542497 ACACTGTCAAAAACGCTCTTATATTA 57.458 30.769 0.00 0.00 0.00 0.98
3685 3712 9.162764 ACACTGTCAAAAACGCTCTTATATTAT 57.837 29.630 0.00 0.00 0.00 1.28
3686 3713 9.425893 CACTGTCAAAAACGCTCTTATATTATG 57.574 33.333 0.00 0.00 0.00 1.90
3687 3714 8.612619 ACTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 0.00 2.74
3688 3715 7.925993 TGTCAAAAACGCTCTTATATTATGGG 58.074 34.615 0.00 0.00 0.00 4.00
3689 3716 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
3690 3717 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
3691 3718 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3692 3719 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3693 3720 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3694 3721 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3695 3722 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3696 3723 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
3697 3724 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
3698 3725 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3699 3726 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3700 3727 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3701 3728 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
3702 3729 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
3703 3730 1.229131 ATGGGACGGAGGGAGTAGTA 58.771 55.000 0.00 0.00 0.00 1.82
3706 3733 1.064091 GGGACGGAGGGAGTAGTACTT 60.064 57.143 0.00 0.00 0.00 2.24
3875 3902 4.035675 AGCTTTGTTCACTGCTGTAAGTTC 59.964 41.667 0.00 0.00 35.30 3.01
3898 3925 4.864247 CACAAACATTTATGGTGCTTAGGC 59.136 41.667 0.00 0.00 39.26 3.93
4021 4048 6.758806 AATACTACCTCCGTCCCAAAATAT 57.241 37.500 0.00 0.00 0.00 1.28
4022 4049 7.860649 AATACTACCTCCGTCCCAAAATATA 57.139 36.000 0.00 0.00 0.00 0.86
4023 4050 7.860649 ATACTACCTCCGTCCCAAAATATAA 57.139 36.000 0.00 0.00 0.00 0.98
4027 4054 4.472108 ACCTCCGTCCCAAAATATAAGACA 59.528 41.667 0.00 0.00 0.00 3.41
4029 4056 5.396436 CCTCCGTCCCAAAATATAAGACACT 60.396 44.000 0.00 0.00 0.00 3.55
4030 4057 6.057321 TCCGTCCCAAAATATAAGACACTT 57.943 37.500 0.00 0.00 0.00 3.16
4031 4058 6.478129 TCCGTCCCAAAATATAAGACACTTT 58.522 36.000 0.00 0.00 0.00 2.66
4033 4060 7.027161 CCGTCCCAAAATATAAGACACTTTTG 58.973 38.462 0.00 0.00 37.98 2.44
4034 4061 6.526674 CGTCCCAAAATATAAGACACTTTTGC 59.473 38.462 0.00 0.00 37.30 3.68
4035 4062 7.375053 GTCCCAAAATATAAGACACTTTTGCA 58.625 34.615 0.00 0.00 37.30 4.08
4036 4063 7.542130 GTCCCAAAATATAAGACACTTTTGCAG 59.458 37.037 0.00 0.00 37.30 4.41
4037 4064 7.232534 TCCCAAAATATAAGACACTTTTGCAGT 59.767 33.333 0.00 0.00 37.30 4.40
4038 4065 7.872483 CCCAAAATATAAGACACTTTTGCAGTT 59.128 33.333 0.00 0.00 37.30 3.16
4039 4066 8.915654 CCAAAATATAAGACACTTTTGCAGTTC 58.084 33.333 0.00 0.00 37.30 3.01
4047 4074 6.397272 AGACACTTTTGCAGTTCAAATTTGA 58.603 32.000 16.91 16.91 43.53 2.69
4125 4181 1.065926 TGGATGCTGTGACTTAGGCAG 60.066 52.381 0.00 0.00 38.11 4.85
4215 4271 4.202245 TGATTCCTACACTAACACCAGC 57.798 45.455 0.00 0.00 0.00 4.85
4218 4274 2.321719 TCCTACACTAACACCAGCACA 58.678 47.619 0.00 0.00 0.00 4.57
4227 4283 3.340814 AACACCAGCACATTAGAGGAG 57.659 47.619 0.00 0.00 0.00 3.69
4228 4284 1.556911 ACACCAGCACATTAGAGGAGG 59.443 52.381 0.00 0.00 0.00 4.30
4229 4285 1.833630 CACCAGCACATTAGAGGAGGA 59.166 52.381 0.00 0.00 0.00 3.71
4230 4286 2.114616 ACCAGCACATTAGAGGAGGAG 58.885 52.381 0.00 0.00 0.00 3.69
4265 4321 5.726980 AATAAATTGCAACTCCTCAAGCA 57.273 34.783 0.00 0.00 34.79 3.91
4268 4324 1.174712 TTGCAACTCCTCAAGCAGCC 61.175 55.000 0.00 0.00 38.35 4.85
4270 4326 0.964358 GCAACTCCTCAAGCAGCCAT 60.964 55.000 0.00 0.00 0.00 4.40
4271 4327 1.679944 GCAACTCCTCAAGCAGCCATA 60.680 52.381 0.00 0.00 0.00 2.74
4272 4328 2.286872 CAACTCCTCAAGCAGCCATAG 58.713 52.381 0.00 0.00 0.00 2.23
4285 4342 1.972660 GCCATAGTGCCCGTCTCCTT 61.973 60.000 0.00 0.00 0.00 3.36
4362 4421 2.818921 AGCCCAACCAATATTGCTTCA 58.181 42.857 10.11 0.00 0.00 3.02
4407 4466 7.961325 AATTTGCCGTTGAACATTAGAAATT 57.039 28.000 0.00 0.00 0.00 1.82
4408 4467 6.761731 TTTGCCGTTGAACATTAGAAATTG 57.238 33.333 0.00 0.00 0.00 2.32
4409 4468 5.446143 TGCCGTTGAACATTAGAAATTGT 57.554 34.783 0.00 0.00 0.00 2.71
4411 4470 4.621034 GCCGTTGAACATTAGAAATTGTGG 59.379 41.667 0.00 0.00 0.00 4.17
4413 4472 6.212955 CCGTTGAACATTAGAAATTGTGGTT 58.787 36.000 0.00 0.00 0.00 3.67
4435 4512 6.884836 GGTTTATGTAGGTGAGATGTTTTCCT 59.115 38.462 0.00 0.00 0.00 3.36
4452 4529 9.918630 ATGTTTTCCTTTGTAATGAAATGAGAG 57.081 29.630 0.00 0.00 0.00 3.20
4506 4822 9.383519 ACTGACATTGTTGAATACTATGTAAGG 57.616 33.333 16.09 8.38 46.95 2.69
4511 4827 8.822855 CATTGTTGAATACTATGTAAGGCGTTA 58.177 33.333 0.00 0.00 35.90 3.18
4521 4837 7.144000 ACTATGTAAGGCGTTAGTAGTTATGC 58.856 38.462 14.01 0.00 0.00 3.14
4548 4864 3.819368 TGGTTCAGCTCATTCTTGAACA 58.181 40.909 15.75 3.04 40.18 3.18
4605 4921 6.766944 TCCGGTCCTTTTTATTTCGCATATAA 59.233 34.615 0.00 0.00 0.00 0.98
4651 4967 6.959639 AGAAAGTTTGACCAGCTTTATTGA 57.040 33.333 0.00 0.00 33.22 2.57
4656 4972 7.770801 AGTTTGACCAGCTTTATTGAAAAAC 57.229 32.000 0.00 0.00 0.00 2.43
4848 5164 8.376270 GGAGGAAGTACATAATAAACCTAGCAT 58.624 37.037 0.00 0.00 0.00 3.79
4892 5208 5.823045 AGAATTCTTCCGTCCATTCCATTAC 59.177 40.000 0.88 0.00 0.00 1.89
4941 5257 6.595716 GCCTTCTAATGTTATCAGTCAACACT 59.404 38.462 0.00 0.00 38.63 3.55
5097 5413 4.772624 TGTTGTGACTACTCCTAAGCATCT 59.227 41.667 0.00 0.00 0.00 2.90
5208 5530 6.442513 ACAGTGCTATTTCCTTGCTAAATC 57.557 37.500 0.00 0.00 0.00 2.17
5470 5898 2.550208 CGTCCAACTTCAGCCCTAGTTT 60.550 50.000 0.00 0.00 32.50 2.66
5475 5903 3.983044 ACTTCAGCCCTAGTTTGTAGG 57.017 47.619 0.00 0.00 34.52 3.18
5765 6193 7.589221 GCATAAAAGGAATAAAGAAGATGAGCG 59.411 37.037 0.00 0.00 0.00 5.03
6013 6441 2.167398 TTTCTCCCCAAGCGAGACGG 62.167 60.000 0.00 0.00 36.11 4.79
6014 6442 3.068691 CTCCCCAAGCGAGACGGA 61.069 66.667 0.00 0.00 0.00 4.69
6193 6621 1.228644 AAGCAGTGCCATCCAGCAA 60.229 52.632 12.58 0.00 46.19 3.91
6194 6622 0.613853 AAGCAGTGCCATCCAGCAAT 60.614 50.000 12.58 0.00 46.19 3.56
6195 6623 1.035932 AGCAGTGCCATCCAGCAATC 61.036 55.000 12.58 0.00 46.19 2.67
6196 6624 1.317431 GCAGTGCCATCCAGCAATCA 61.317 55.000 2.85 0.00 46.19 2.57
6197 6625 0.738975 CAGTGCCATCCAGCAATCAG 59.261 55.000 0.00 0.00 46.19 2.90
6198 6626 1.035932 AGTGCCATCCAGCAATCAGC 61.036 55.000 0.00 0.00 46.19 4.26
6199 6627 1.317431 GTGCCATCCAGCAATCAGCA 61.317 55.000 0.00 0.00 46.19 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.746615 CCTCACCTTCACCATGGCG 60.747 63.158 13.04 1.26 0.00 5.69
23 24 1.070786 GACGCCAACCTCACCTTCA 59.929 57.895 0.00 0.00 0.00 3.02
58 59 3.596214 GAACATTTCTCGCTGGAACCTA 58.404 45.455 0.00 0.00 0.00 3.08
62 63 1.438651 CGGAACATTTCTCGCTGGAA 58.561 50.000 0.00 0.00 0.00 3.53
63 64 1.019278 GCGGAACATTTCTCGCTGGA 61.019 55.000 11.88 0.00 42.23 3.86
64 65 1.425428 GCGGAACATTTCTCGCTGG 59.575 57.895 11.88 0.00 42.23 4.85
89 91 0.037605 TTCTTCTCGCTCGGTTTCCC 60.038 55.000 0.00 0.00 0.00 3.97
101 103 4.506886 TCTGTCGGACTCTTTTCTTCTC 57.493 45.455 9.88 0.00 0.00 2.87
102 104 4.939052 TTCTGTCGGACTCTTTTCTTCT 57.061 40.909 9.88 0.00 0.00 2.85
107 109 7.551617 TCTTTACTTTTTCTGTCGGACTCTTTT 59.448 33.333 9.88 0.00 0.00 2.27
108 110 7.046033 TCTTTACTTTTTCTGTCGGACTCTTT 58.954 34.615 9.88 0.00 0.00 2.52
112 114 5.753921 CACTCTTTACTTTTTCTGTCGGACT 59.246 40.000 9.88 0.00 0.00 3.85
122 124 3.547746 TCCCACGCACTCTTTACTTTTT 58.452 40.909 0.00 0.00 0.00 1.94
123 125 3.202829 TCCCACGCACTCTTTACTTTT 57.797 42.857 0.00 0.00 0.00 2.27
124 126 2.922740 TCCCACGCACTCTTTACTTT 57.077 45.000 0.00 0.00 0.00 2.66
132 134 0.889186 ACAAACCATCCCACGCACTC 60.889 55.000 0.00 0.00 0.00 3.51
133 135 0.467290 AACAAACCATCCCACGCACT 60.467 50.000 0.00 0.00 0.00 4.40
135 137 1.115467 AAAACAAACCATCCCACGCA 58.885 45.000 0.00 0.00 0.00 5.24
136 138 1.496934 CAAAACAAACCATCCCACGC 58.503 50.000 0.00 0.00 0.00 5.34
137 139 1.270041 CCCAAAACAAACCATCCCACG 60.270 52.381 0.00 0.00 0.00 4.94
138 140 1.765904 ACCCAAAACAAACCATCCCAC 59.234 47.619 0.00 0.00 0.00 4.61
139 141 2.043227 GACCCAAAACAAACCATCCCA 58.957 47.619 0.00 0.00 0.00 4.37
140 142 1.346395 GGACCCAAAACAAACCATCCC 59.654 52.381 0.00 0.00 0.00 3.85
141 143 2.043227 TGGACCCAAAACAAACCATCC 58.957 47.619 0.00 0.00 0.00 3.51
143 145 3.044894 ACATGGACCCAAAACAAACCAT 58.955 40.909 0.00 0.00 38.44 3.55
144 146 2.472029 ACATGGACCCAAAACAAACCA 58.528 42.857 0.00 0.00 0.00 3.67
150 157 4.394729 TCTCAAGTACATGGACCCAAAAC 58.605 43.478 3.84 0.00 0.00 2.43
152 159 4.927267 ATCTCAAGTACATGGACCCAAA 57.073 40.909 3.84 0.00 0.00 3.28
158 165 8.977412 TCTGTAATGTTATCTCAAGTACATGGA 58.023 33.333 0.00 0.00 31.98 3.41
166 173 9.952188 TCGAACTATCTGTAATGTTATCTCAAG 57.048 33.333 0.00 0.00 0.00 3.02
169 176 9.731819 TGTTCGAACTATCTGTAATGTTATCTC 57.268 33.333 27.32 0.00 0.00 2.75
176 185 6.367695 TGTGGTTGTTCGAACTATCTGTAATG 59.632 38.462 27.32 0.00 0.00 1.90
187 196 2.538132 CGGAAAGTGTGGTTGTTCGAAC 60.538 50.000 21.42 21.42 0.00 3.95
189 198 1.292061 CGGAAAGTGTGGTTGTTCGA 58.708 50.000 0.00 0.00 0.00 3.71
190 199 1.011333 ACGGAAAGTGTGGTTGTTCG 58.989 50.000 0.00 0.00 0.00 3.95
202 211 2.670148 CCCCTCCCCTCACGGAAAG 61.670 68.421 0.00 0.00 0.00 2.62
207 216 2.041922 TGATCCCCTCCCCTCACG 60.042 66.667 0.00 0.00 0.00 4.35
208 217 1.768077 CCTGATCCCCTCCCCTCAC 60.768 68.421 0.00 0.00 0.00 3.51
209 218 1.946707 TCCTGATCCCCTCCCCTCA 60.947 63.158 0.00 0.00 0.00 3.86
218 227 1.344763 CCAACTATCCGTCCTGATCCC 59.655 57.143 0.00 0.00 0.00 3.85
220 229 2.317040 TCCCAACTATCCGTCCTGATC 58.683 52.381 0.00 0.00 0.00 2.92
221 230 2.471815 TCCCAACTATCCGTCCTGAT 57.528 50.000 0.00 0.00 0.00 2.90
222 231 2.039418 CATCCCAACTATCCGTCCTGA 58.961 52.381 0.00 0.00 0.00 3.86
223 232 2.036475 CTCATCCCAACTATCCGTCCTG 59.964 54.545 0.00 0.00 0.00 3.86
224 233 2.091278 TCTCATCCCAACTATCCGTCCT 60.091 50.000 0.00 0.00 0.00 3.85
225 234 2.317040 TCTCATCCCAACTATCCGTCC 58.683 52.381 0.00 0.00 0.00 4.79
226 235 4.099573 TCTTTCTCATCCCAACTATCCGTC 59.900 45.833 0.00 0.00 0.00 4.79
227 236 4.030913 TCTTTCTCATCCCAACTATCCGT 58.969 43.478 0.00 0.00 0.00 4.69
228 237 4.672587 TCTTTCTCATCCCAACTATCCG 57.327 45.455 0.00 0.00 0.00 4.18
229 238 7.012799 GTCATTTCTTTCTCATCCCAACTATCC 59.987 40.741 0.00 0.00 0.00 2.59
230 239 7.012799 GGTCATTTCTTTCTCATCCCAACTATC 59.987 40.741 0.00 0.00 0.00 2.08
231 240 6.830838 GGTCATTTCTTTCTCATCCCAACTAT 59.169 38.462 0.00 0.00 0.00 2.12
232 241 6.012508 AGGTCATTTCTTTCTCATCCCAACTA 60.013 38.462 0.00 0.00 0.00 2.24
233 242 5.012893 GGTCATTTCTTTCTCATCCCAACT 58.987 41.667 0.00 0.00 0.00 3.16
234 243 5.012893 AGGTCATTTCTTTCTCATCCCAAC 58.987 41.667 0.00 0.00 0.00 3.77
235 244 5.261040 AGGTCATTTCTTTCTCATCCCAA 57.739 39.130 0.00 0.00 0.00 4.12
236 245 4.934797 AGGTCATTTCTTTCTCATCCCA 57.065 40.909 0.00 0.00 0.00 4.37
250 259 8.423349 TGTTGATCTTCAAAATCAAAGGTCATT 58.577 29.630 0.00 0.00 41.09 2.57
255 264 8.821147 TGATTGTTGATCTTCAAAATCAAAGG 57.179 30.769 16.49 0.00 42.92 3.11
286 297 7.438160 CGGCTATAGCGGATATAATTGAATCAA 59.562 37.037 23.91 0.00 43.02 2.57
288 299 6.366332 CCGGCTATAGCGGATATAATTGAATC 59.634 42.308 28.35 5.35 43.02 2.52
303 314 1.079503 GCATTGCTACCGGCTATAGC 58.920 55.000 16.78 16.78 44.48 2.97
304 315 2.069273 GTGCATTGCTACCGGCTATAG 58.931 52.381 10.49 0.00 42.39 1.31
306 317 0.880278 CGTGCATTGCTACCGGCTAT 60.880 55.000 10.49 0.00 42.39 2.97
307 318 1.520564 CGTGCATTGCTACCGGCTA 60.521 57.895 10.49 0.00 42.39 3.93
312 323 3.876198 CGCCCGTGCATTGCTACC 61.876 66.667 10.49 0.00 37.32 3.18
313 324 2.577763 GAACGCCCGTGCATTGCTAC 62.578 60.000 10.49 5.76 37.32 3.58
314 325 2.359354 AACGCCCGTGCATTGCTA 60.359 55.556 10.49 0.00 37.32 3.49
315 326 3.737172 GAACGCCCGTGCATTGCT 61.737 61.111 10.49 0.00 37.32 3.91
316 327 3.737172 AGAACGCCCGTGCATTGC 61.737 61.111 0.46 0.46 37.32 3.56
317 328 1.647545 ATCAGAACGCCCGTGCATTG 61.648 55.000 1.17 0.00 37.32 2.82
318 329 0.107897 TATCAGAACGCCCGTGCATT 60.108 50.000 1.17 0.00 37.32 3.56
319 330 0.530650 CTATCAGAACGCCCGTGCAT 60.531 55.000 1.17 0.00 37.32 3.96
320 331 1.153647 CTATCAGAACGCCCGTGCA 60.154 57.895 1.17 0.00 37.32 4.57
321 332 0.101759 TACTATCAGAACGCCCGTGC 59.898 55.000 0.00 0.00 0.00 5.34
322 333 2.572191 TTACTATCAGAACGCCCGTG 57.428 50.000 0.00 0.00 0.00 4.94
323 334 2.231964 TGTTTACTATCAGAACGCCCGT 59.768 45.455 0.00 0.00 0.00 5.28
324 335 2.883574 TGTTTACTATCAGAACGCCCG 58.116 47.619 0.00 0.00 0.00 6.13
325 336 3.063588 GCTTGTTTACTATCAGAACGCCC 59.936 47.826 0.00 0.00 0.00 6.13
326 337 3.682858 TGCTTGTTTACTATCAGAACGCC 59.317 43.478 0.00 0.00 0.00 5.68
334 345 6.252869 TCGAACGATCTTGCTTGTTTACTATC 59.747 38.462 0.00 0.00 0.00 2.08
344 355 0.037326 TGCCTCGAACGATCTTGCTT 60.037 50.000 0.00 0.00 0.00 3.91
347 358 1.714794 AAGTGCCTCGAACGATCTTG 58.285 50.000 0.00 0.00 0.00 3.02
370 381 2.594131 TGAGAGTTTCACCGAAGAGGA 58.406 47.619 0.00 0.00 45.00 3.71
517 528 2.941616 GCCGGCAAAATGGGCTTGA 61.942 57.895 24.80 0.00 43.52 3.02
608 619 0.818938 TAACATAAGCGAGGTGGCGA 59.181 50.000 0.00 0.00 38.18 5.54
987 1004 1.000394 TGAGGCATTTCGTCGAACAGA 60.000 47.619 7.29 0.00 32.48 3.41
1212 1229 3.255642 CCACAAACCTATCAACACCCAAG 59.744 47.826 0.00 0.00 0.00 3.61
1248 1265 3.501828 TGCCACATTTCGCATACATATCC 59.498 43.478 0.00 0.00 0.00 2.59
1291 1308 4.286297 TCACCGGAATTTCACTGAAGAT 57.714 40.909 9.46 0.00 0.00 2.40
1361 1378 1.526917 GCAGCCTCCACAACACAGT 60.527 57.895 0.00 0.00 0.00 3.55
1428 1445 2.440409 CCAGCAGCTAACCTCAATGTT 58.560 47.619 0.00 0.00 0.00 2.71
1482 1499 5.121611 CAGTGCATAAACGTGAACATTCCTA 59.878 40.000 0.00 0.00 29.48 2.94
1494 1511 2.095263 CCCCACTTTCAGTGCATAAACG 60.095 50.000 0.00 0.00 44.63 3.60
1506 1523 1.423921 TCTCTTCCCAACCCCACTTTC 59.576 52.381 0.00 0.00 0.00 2.62
1537 1554 1.069204 TGACTTGACCAGCTCAGACAC 59.931 52.381 0.00 0.00 0.00 3.67
1551 1568 1.961180 CTACCCTCCCGGCTGACTTG 61.961 65.000 0.00 0.00 33.26 3.16
1573 1590 5.683876 AGCTGTCCAATGTACTGAGTATT 57.316 39.130 0.00 0.00 0.00 1.89
1668 1685 1.627329 AGCTTCACTGCTTCATCCTGA 59.373 47.619 0.00 0.00 40.93 3.86
1695 1712 1.098129 GGCCCGAGGAAAGAAGATGC 61.098 60.000 0.00 0.00 0.00 3.91
1707 1724 0.676782 CCCTTAAACTGTGGCCCGAG 60.677 60.000 0.00 0.00 0.00 4.63
1710 1727 1.545841 CTTCCCTTAAACTGTGGCCC 58.454 55.000 0.00 0.00 0.00 5.80
1715 1732 3.267031 CAGATCCCCTTCCCTTAAACTGT 59.733 47.826 0.00 0.00 0.00 3.55
1749 1766 8.592809 ACTTCCTCTTTGATATGACAGATATCC 58.407 37.037 0.00 0.00 31.69 2.59
1753 1770 7.855375 TGAACTTCCTCTTTGATATGACAGAT 58.145 34.615 0.00 0.00 0.00 2.90
1755 1772 6.036953 GCTGAACTTCCTCTTTGATATGACAG 59.963 42.308 0.00 0.00 0.00 3.51
1785 1802 8.523915 TTCCAGATTTCAATGTATAAGCATGT 57.476 30.769 0.00 0.00 0.00 3.21
1863 1880 2.891936 GCGTGCATCAGCGATCCA 60.892 61.111 0.00 0.00 46.23 3.41
1895 1912 6.326375 ACAATATCTCGTGACTCTGAAGTTC 58.674 40.000 0.00 0.00 35.28 3.01
1915 1932 2.092267 TGACTGCAGCCCATGATACAAT 60.092 45.455 15.27 0.00 0.00 2.71
2001 2018 4.038522 TGCTGATCTAATAGTGCTCCAGAC 59.961 45.833 0.00 0.00 0.00 3.51
2091 2108 2.553028 CCCAACTTTAAGAGCCAGAGCA 60.553 50.000 0.00 0.00 43.56 4.26
2119 2136 4.082571 GGATGCACTAACAAAGTCAGCAAT 60.083 41.667 0.00 0.00 39.68 3.56
2139 2156 2.764010 TGCGTACATGTTCACTAGGGAT 59.236 45.455 2.30 0.00 0.00 3.85
2157 2174 2.601314 CTCAATGTGATGGCATTTTGCG 59.399 45.455 0.00 0.00 46.21 4.85
2172 2189 1.520494 ACTCAGCAGCACACTCAATG 58.480 50.000 0.00 0.00 0.00 2.82
2176 2193 4.378874 GGAAAATAACTCAGCAGCACACTC 60.379 45.833 0.00 0.00 0.00 3.51
2191 2208 4.956700 TGGAAACTGTGTGTGGGAAAATAA 59.043 37.500 0.00 0.00 0.00 1.40
2193 2210 3.370104 TGGAAACTGTGTGTGGGAAAAT 58.630 40.909 0.00 0.00 0.00 1.82
2196 2213 2.025793 TCTTGGAAACTGTGTGTGGGAA 60.026 45.455 0.00 0.00 0.00 3.97
2247 2264 3.635591 CAGGAAATTCCAGCAATACCCT 58.364 45.455 15.21 0.00 39.61 4.34
2308 2325 0.900182 TGATCAGGACGCAGACCAGT 60.900 55.000 0.00 0.00 46.86 4.00
2358 2375 3.326006 CCTCCTTTGCTCCTATATCAGCA 59.674 47.826 2.32 2.32 44.02 4.41
2475 2492 1.940883 AAGCACTGGCAATGCATCCG 61.941 55.000 23.87 0.00 45.92 4.18
2628 2645 2.356382 TCTTGCAAAGGTAACACGGTTG 59.644 45.455 0.00 0.00 46.24 3.77
2782 2799 4.065088 TCTCTTCTTGGTTCCATCAAACG 58.935 43.478 0.00 0.00 0.00 3.60
2934 2951 2.223340 CCGCACATCAGCATAAGTTTCC 60.223 50.000 0.00 0.00 0.00 3.13
3019 3036 7.113658 TGATAGTGTTCATCCTAAGTTCCTC 57.886 40.000 0.00 0.00 0.00 3.71
3111 3128 3.007398 ACAGTTTGTGAGATCCACCTCTC 59.993 47.826 10.60 0.00 45.09 3.20
3148 3165 2.171448 GGTTAGATCCAGTGCTGTCCAT 59.829 50.000 0.00 0.00 0.00 3.41
3166 3183 6.942976 TGAAGATAACTAGGACGAATTGGTT 58.057 36.000 0.00 0.00 0.00 3.67
3184 3201 9.064706 CATCTTAAGGCTATTGTCAATGAAGAT 57.935 33.333 8.39 9.11 31.75 2.40
3210 3227 9.321562 TCGGTATTAACAAATCTTGTATCCTTC 57.678 33.333 0.00 0.00 44.59 3.46
3211 3228 9.326413 CTCGGTATTAACAAATCTTGTATCCTT 57.674 33.333 0.00 0.00 44.59 3.36
3332 3349 4.813027 ACATGATGATTCAGTTTGTTGCC 58.187 39.130 0.00 0.00 34.73 4.52
3478 3504 8.974238 TCTCCATGAAAATGCAAAGAGATATTT 58.026 29.630 0.00 0.00 30.02 1.40
3598 3625 6.128363 GCTAACTATTTCGTGCTAACCTGTTT 60.128 38.462 0.00 0.00 0.00 2.83
3623 3650 0.689745 TTATGGGACGGAGGGAGTGG 60.690 60.000 0.00 0.00 0.00 4.00
3624 3651 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
3625 3652 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3626 3653 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3627 3654 5.222484 ACTCTTATATTATGGGACGGAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
3628 3655 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
3629 3656 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
3630 3657 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
3631 3658 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
3632 3659 8.342634 CAAAAACACTCTTATATTATGGGACGG 58.657 37.037 0.00 0.00 0.00 4.79
3633 3660 9.104965 TCAAAAACACTCTTATATTATGGGACG 57.895 33.333 0.00 0.00 0.00 4.79
3635 3662 9.967451 TGTCAAAAACACTCTTATATTATGGGA 57.033 29.630 0.00 0.00 31.20 4.37
3657 3684 2.627945 AGAGCGTTTTTGACAGTGTCA 58.372 42.857 22.06 22.06 41.09 3.58
3658 3685 3.675467 AAGAGCGTTTTTGACAGTGTC 57.325 42.857 16.68 16.68 0.00 3.67
3659 3686 7.435068 AATATAAGAGCGTTTTTGACAGTGT 57.565 32.000 0.00 0.00 0.00 3.55
3660 3687 9.425893 CATAATATAAGAGCGTTTTTGACAGTG 57.574 33.333 0.00 0.00 0.00 3.66
3661 3688 8.612619 CCATAATATAAGAGCGTTTTTGACAGT 58.387 33.333 0.00 0.00 0.00 3.55
3662 3689 8.070171 CCCATAATATAAGAGCGTTTTTGACAG 58.930 37.037 0.00 0.00 0.00 3.51
3663 3690 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
3664 3691 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
3665 3692 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
3666 3693 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
3667 3694 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3668 3695 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3669 3696 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3670 3697 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3671 3698 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3672 3699 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3673 3700 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
3674 3701 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
3675 3702 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3676 3703 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3677 3704 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3678 3705 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3679 3706 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3680 3707 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3681 3708 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3682 3709 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3683 3710 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3684 3711 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
3685 3712 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
3686 3713 0.550432 AGTACTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
3687 3714 2.433662 AAGTACTACTCCCTCCGTCC 57.566 55.000 0.00 0.00 0.00 4.79
3688 3715 3.629855 GGTAAAGTACTACTCCCTCCGTC 59.370 52.174 0.00 0.00 0.00 4.79
3689 3716 3.268072 AGGTAAAGTACTACTCCCTCCGT 59.732 47.826 0.00 0.00 0.00 4.69
3690 3717 3.895998 AGGTAAAGTACTACTCCCTCCG 58.104 50.000 0.00 0.00 0.00 4.63
3691 3718 7.911130 AATAAGGTAAAGTACTACTCCCTCC 57.089 40.000 0.00 0.00 0.00 4.30
3703 3730 8.663167 ACAGGTACCAACTAAATAAGGTAAAGT 58.337 33.333 15.94 0.00 38.27 2.66
3706 3733 8.883302 AGAACAGGTACCAACTAAATAAGGTAA 58.117 33.333 15.94 0.00 38.27 2.85
3875 3902 4.864247 GCCTAAGCACCATAAATGTTTGTG 59.136 41.667 0.00 0.00 39.53 3.33
3898 3925 2.143122 AGTAAGAATGTGTGCGGTGTG 58.857 47.619 0.00 0.00 0.00 3.82
3899 3926 2.543777 AGTAAGAATGTGTGCGGTGT 57.456 45.000 0.00 0.00 0.00 4.16
3900 3927 5.006358 GGTATTAGTAAGAATGTGTGCGGTG 59.994 44.000 0.00 0.00 0.00 4.94
3901 3928 5.105064 AGGTATTAGTAAGAATGTGTGCGGT 60.105 40.000 0.00 0.00 0.00 5.68
3902 3929 5.357257 AGGTATTAGTAAGAATGTGTGCGG 58.643 41.667 0.00 0.00 0.00 5.69
3903 3930 6.273825 AGAGGTATTAGTAAGAATGTGTGCG 58.726 40.000 0.00 0.00 0.00 5.34
3945 3972 6.545508 TCTTTGTCAACTCGATGCAATAATG 58.454 36.000 0.00 0.00 0.00 1.90
4037 4064 6.473397 ACGTTTTTGCAGTTCAAATTTGAA 57.527 29.167 26.01 26.01 43.53 2.69
4038 4065 7.763172 ATACGTTTTTGCAGTTCAAATTTGA 57.237 28.000 16.91 16.91 43.53 2.69
4047 4074 7.711339 TCCCAAAAATAATACGTTTTTGCAGTT 59.289 29.630 14.17 0.00 47.00 3.16
4051 4078 6.400197 CCGTCCCAAAAATAATACGTTTTTGC 60.400 38.462 14.17 3.78 47.00 3.68
4054 4081 6.349528 CCTCCGTCCCAAAAATAATACGTTTT 60.350 38.462 0.00 0.00 0.00 2.43
4055 4082 5.124297 CCTCCGTCCCAAAAATAATACGTTT 59.876 40.000 0.00 0.00 0.00 3.60
4056 4083 4.637091 CCTCCGTCCCAAAAATAATACGTT 59.363 41.667 0.00 0.00 0.00 3.99
4058 4085 4.193865 ACCTCCGTCCCAAAAATAATACG 58.806 43.478 0.00 0.00 0.00 3.06
4059 4086 6.351711 ACTACCTCCGTCCCAAAAATAATAC 58.648 40.000 0.00 0.00 0.00 1.89
4060 4087 6.564557 ACTACCTCCGTCCCAAAAATAATA 57.435 37.500 0.00 0.00 0.00 0.98
4061 4088 5.446260 ACTACCTCCGTCCCAAAAATAAT 57.554 39.130 0.00 0.00 0.00 1.28
4062 4089 4.914177 ACTACCTCCGTCCCAAAAATAA 57.086 40.909 0.00 0.00 0.00 1.40
4063 4090 4.776837 TGTACTACCTCCGTCCCAAAAATA 59.223 41.667 0.00 0.00 0.00 1.40
4065 4092 2.971330 TGTACTACCTCCGTCCCAAAAA 59.029 45.455 0.00 0.00 0.00 1.94
4125 4181 7.064728 CAGCAAGGAGGTATTAGTAAAAGTGTC 59.935 40.741 0.00 0.00 0.00 3.67
4215 4271 3.055530 AGTTGCACTCCTCCTCTAATGTG 60.056 47.826 0.00 0.00 0.00 3.21
4218 4274 3.054802 CCAAGTTGCACTCCTCCTCTAAT 60.055 47.826 0.00 0.00 0.00 1.73
4227 4283 6.347644 GCAATTTATTTTCCAAGTTGCACTCC 60.348 38.462 9.52 0.00 43.85 3.85
4228 4284 6.202570 TGCAATTTATTTTCCAAGTTGCACTC 59.797 34.615 12.17 0.00 46.83 3.51
4229 4285 6.054295 TGCAATTTATTTTCCAAGTTGCACT 58.946 32.000 12.17 0.00 46.83 4.40
4230 4286 6.297694 TGCAATTTATTTTCCAAGTTGCAC 57.702 33.333 12.17 0.00 46.83 4.57
4245 4301 3.057315 GCTGCTTGAGGAGTTGCAATTTA 60.057 43.478 0.59 0.00 35.78 1.40
4246 4302 2.288640 GCTGCTTGAGGAGTTGCAATTT 60.289 45.455 0.59 0.00 35.78 1.82
4265 4321 2.435693 GGAGACGGGCACTATGGCT 61.436 63.158 2.17 0.00 43.20 4.75
4268 4324 2.894126 AGATAAGGAGACGGGCACTATG 59.106 50.000 0.00 0.00 0.00 2.23
4270 4326 2.584236 GAGATAAGGAGACGGGCACTA 58.416 52.381 0.00 0.00 0.00 2.74
4271 4327 1.404843 GAGATAAGGAGACGGGCACT 58.595 55.000 0.00 0.00 0.00 4.40
4272 4328 0.389757 GGAGATAAGGAGACGGGCAC 59.610 60.000 0.00 0.00 0.00 5.01
4407 4466 5.755409 ACATCTCACCTACATAAACCACA 57.245 39.130 0.00 0.00 0.00 4.17
4408 4467 7.361799 GGAAAACATCTCACCTACATAAACCAC 60.362 40.741 0.00 0.00 0.00 4.16
4409 4468 6.657541 GGAAAACATCTCACCTACATAAACCA 59.342 38.462 0.00 0.00 0.00 3.67
4411 4470 7.923414 AGGAAAACATCTCACCTACATAAAC 57.077 36.000 0.00 0.00 0.00 2.01
4413 4472 7.942341 ACAAAGGAAAACATCTCACCTACATAA 59.058 33.333 0.00 0.00 0.00 1.90
4435 4512 6.270156 TGCATGCTCTCATTTCATTACAAA 57.730 33.333 20.33 0.00 0.00 2.83
4452 4529 3.698029 AACAATATCGAACCTGCATGC 57.302 42.857 11.82 11.82 0.00 4.06
4506 4822 4.209288 CCATCAGTGCATAACTACTAACGC 59.791 45.833 0.00 0.00 36.83 4.84
4507 4823 5.348986 ACCATCAGTGCATAACTACTAACG 58.651 41.667 0.00 0.00 36.83 3.18
4511 4827 5.420725 TGAACCATCAGTGCATAACTACT 57.579 39.130 0.00 0.00 36.83 2.57
4535 4851 7.171848 TGCAATTCCATTTTGTTCAAGAATGAG 59.828 33.333 15.10 9.56 36.78 2.90
4605 4921 8.908786 TCTAAAGTTTGATGTCAGACAAATCT 57.091 30.769 7.50 0.28 38.09 2.40
4627 4943 8.458573 TTCAATAAAGCTGGTCAAACTTTCTA 57.541 30.769 0.00 0.00 35.38 2.10
4651 4967 9.352784 CGTATTGTGAATGTGGATATTGTTTTT 57.647 29.630 0.00 0.00 0.00 1.94
4656 4972 9.385902 GATTTCGTATTGTGAATGTGGATATTG 57.614 33.333 0.00 0.00 0.00 1.90
4747 5063 9.723601 AAGTTTGACCATATTTGTATGCAAAAT 57.276 25.926 13.11 5.76 46.23 1.82
4892 5208 6.263344 CACAACATAGCCAGAAGATTTCATG 58.737 40.000 0.00 0.00 0.00 3.07
4941 5257 3.895998 TGACCAGCCATGCAATTATACA 58.104 40.909 0.00 0.00 0.00 2.29
5097 5413 5.350504 TTGAAGTTGCTGAATTGGGAAAA 57.649 34.783 0.00 0.00 0.00 2.29
5208 5530 6.998968 ATGAACTTCTGCAAATAAGAGAGG 57.001 37.500 9.43 0.00 0.00 3.69
5380 5807 9.655769 GATGTCATTTTATACAACAGCTATGTG 57.344 33.333 13.15 2.27 40.39 3.21
5470 5898 1.777878 TGTTTGAGAAAGGGGCCTACA 59.222 47.619 0.84 0.00 0.00 2.74
5475 5903 1.821136 CCATCTGTTTGAGAAAGGGGC 59.179 52.381 0.00 0.00 33.12 5.80
5552 5980 0.039708 GCAACTGCTTGCCTTGACTC 60.040 55.000 0.00 0.00 46.27 3.36
5717 6145 4.564821 GCTAGGAACCCAACAGTGTTGATA 60.565 45.833 32.72 15.58 0.00 2.15
5751 6179 6.385843 GCTCTATCATCGCTCATCTTCTTTA 58.614 40.000 0.00 0.00 0.00 1.85
5755 6183 3.120025 TCGCTCTATCATCGCTCATCTTC 60.120 47.826 0.00 0.00 0.00 2.87
5756 6184 2.816672 TCGCTCTATCATCGCTCATCTT 59.183 45.455 0.00 0.00 0.00 2.40
5760 6188 1.268079 CCTTCGCTCTATCATCGCTCA 59.732 52.381 0.00 0.00 0.00 4.26
5765 6193 1.069204 TGCACCCTTCGCTCTATCATC 59.931 52.381 0.00 0.00 0.00 2.92
6013 6441 0.887933 TGATTGGCCGGCTTTCTTTC 59.112 50.000 28.56 14.79 0.00 2.62
6014 6442 1.337118 TTGATTGGCCGGCTTTCTTT 58.663 45.000 28.56 5.43 0.00 2.52
6057 6485 4.954092 ATTTTGGAGACTCTCAAATCGC 57.046 40.909 15.46 0.00 31.08 4.58
6150 6578 0.811281 GCCTTGCCTGTGGTTATCAC 59.189 55.000 0.00 0.00 46.23 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.