Multiple sequence alignment - TraesCS1D01G356100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G356100 chr1D 100.000 4115 0 0 1 4115 440717431 440721545 0.000000e+00 7600
1 TraesCS1D01G356100 chr1D 93.207 736 46 3 1 735 67220446 67221178 0.000000e+00 1079
2 TraesCS1D01G356100 chr1B 93.524 3397 153 29 741 4115 598190397 598193748 0.000000e+00 4992
3 TraesCS1D01G356100 chr1A 94.833 3077 115 17 741 3803 537348067 537345021 0.000000e+00 4761
4 TraesCS1D01G356100 chr6D 87.890 2213 225 29 994 3177 36252664 36254862 0.000000e+00 2562
5 TraesCS1D01G356100 chr6B 87.008 2263 239 33 961 3182 75941493 75943741 0.000000e+00 2499
6 TraesCS1D01G356100 chr5D 87.506 2161 223 25 992 3138 406415451 406417578 0.000000e+00 2451
7 TraesCS1D01G356100 chr5D 92.806 556 32 6 186 738 558819974 558820524 0.000000e+00 798
8 TraesCS1D01G356100 chr5D 87.650 583 61 8 999 1580 417827102 417827674 0.000000e+00 667
9 TraesCS1D01G356100 chr5D 81.173 648 105 15 101 735 499443558 499444201 4.750000e-139 505
10 TraesCS1D01G356100 chr6A 86.751 2219 249 31 994 3182 40297969 40300172 0.000000e+00 2427
11 TraesCS1D01G356100 chr5B 87.082 2183 227 29 992 3151 487437651 487439801 0.000000e+00 2418
12 TraesCS1D01G356100 chr5B 88.316 582 59 5 999 1580 505378335 505378907 0.000000e+00 689
13 TraesCS1D01G356100 chr5A 87.007 2155 239 20 998 3138 512059558 512061685 0.000000e+00 2390
14 TraesCS1D01G356100 chr4A 90.636 1463 68 16 1379 2811 114527917 114529340 0.000000e+00 1879
15 TraesCS1D01G356100 chr4A 93.396 742 43 2 1 738 722270865 722271604 0.000000e+00 1094
16 TraesCS1D01G356100 chr4A 88.730 701 40 14 2802 3496 114529747 114530414 0.000000e+00 821
17 TraesCS1D01G356100 chr4A 87.668 373 11 14 3669 4029 114530418 114530767 6.410000e-108 401
18 TraesCS1D01G356100 chr7D 85.906 1710 208 13 1109 2809 509632416 509630731 0.000000e+00 1792
19 TraesCS1D01G356100 chr7D 94.332 741 38 2 1 738 575617323 575618062 0.000000e+00 1133
20 TraesCS1D01G356100 chr7D 93.387 741 43 3 1 738 216086735 216087472 0.000000e+00 1092
21 TraesCS1D01G356100 chr7D 93.042 733 45 5 1 731 263372989 263372261 0.000000e+00 1066
22 TraesCS1D01G356100 chr7D 86.686 676 69 16 980 1648 603583289 603583950 0.000000e+00 730
23 TraesCS1D01G356100 chr4B 88.956 833 37 13 2686 3496 9395913 9396712 0.000000e+00 977
24 TraesCS1D01G356100 chr4B 87.097 372 14 13 3669 4029 9396716 9397064 1.390000e-104 390
25 TraesCS1D01G356100 chr2A 83.039 737 108 13 9 738 712519415 712520141 0.000000e+00 652
26 TraesCS1D01G356100 chr2D 80.775 645 109 13 104 738 601985206 601984567 1.330000e-134 490
27 TraesCS1D01G356100 chr3B 92.199 141 5 3 3894 4029 66707822 66707961 1.170000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G356100 chr1D 440717431 440721545 4114 False 7600.000000 7600 100.000000 1 4115 1 chr1D.!!$F2 4114
1 TraesCS1D01G356100 chr1D 67220446 67221178 732 False 1079.000000 1079 93.207000 1 735 1 chr1D.!!$F1 734
2 TraesCS1D01G356100 chr1B 598190397 598193748 3351 False 4992.000000 4992 93.524000 741 4115 1 chr1B.!!$F1 3374
3 TraesCS1D01G356100 chr1A 537345021 537348067 3046 True 4761.000000 4761 94.833000 741 3803 1 chr1A.!!$R1 3062
4 TraesCS1D01G356100 chr6D 36252664 36254862 2198 False 2562.000000 2562 87.890000 994 3177 1 chr6D.!!$F1 2183
5 TraesCS1D01G356100 chr6B 75941493 75943741 2248 False 2499.000000 2499 87.008000 961 3182 1 chr6B.!!$F1 2221
6 TraesCS1D01G356100 chr5D 406415451 406417578 2127 False 2451.000000 2451 87.506000 992 3138 1 chr5D.!!$F1 2146
7 TraesCS1D01G356100 chr5D 558819974 558820524 550 False 798.000000 798 92.806000 186 738 1 chr5D.!!$F4 552
8 TraesCS1D01G356100 chr5D 417827102 417827674 572 False 667.000000 667 87.650000 999 1580 1 chr5D.!!$F2 581
9 TraesCS1D01G356100 chr5D 499443558 499444201 643 False 505.000000 505 81.173000 101 735 1 chr5D.!!$F3 634
10 TraesCS1D01G356100 chr6A 40297969 40300172 2203 False 2427.000000 2427 86.751000 994 3182 1 chr6A.!!$F1 2188
11 TraesCS1D01G356100 chr5B 487437651 487439801 2150 False 2418.000000 2418 87.082000 992 3151 1 chr5B.!!$F1 2159
12 TraesCS1D01G356100 chr5B 505378335 505378907 572 False 689.000000 689 88.316000 999 1580 1 chr5B.!!$F2 581
13 TraesCS1D01G356100 chr5A 512059558 512061685 2127 False 2390.000000 2390 87.007000 998 3138 1 chr5A.!!$F1 2140
14 TraesCS1D01G356100 chr4A 722270865 722271604 739 False 1094.000000 1094 93.396000 1 738 1 chr4A.!!$F1 737
15 TraesCS1D01G356100 chr4A 114527917 114530767 2850 False 1033.666667 1879 89.011333 1379 4029 3 chr4A.!!$F2 2650
16 TraesCS1D01G356100 chr7D 509630731 509632416 1685 True 1792.000000 1792 85.906000 1109 2809 1 chr7D.!!$R2 1700
17 TraesCS1D01G356100 chr7D 575617323 575618062 739 False 1133.000000 1133 94.332000 1 738 1 chr7D.!!$F2 737
18 TraesCS1D01G356100 chr7D 216086735 216087472 737 False 1092.000000 1092 93.387000 1 738 1 chr7D.!!$F1 737
19 TraesCS1D01G356100 chr7D 263372261 263372989 728 True 1066.000000 1066 93.042000 1 731 1 chr7D.!!$R1 730
20 TraesCS1D01G356100 chr7D 603583289 603583950 661 False 730.000000 730 86.686000 980 1648 1 chr7D.!!$F3 668
21 TraesCS1D01G356100 chr4B 9395913 9397064 1151 False 683.500000 977 88.026500 2686 4029 2 chr4B.!!$F1 1343
22 TraesCS1D01G356100 chr2A 712519415 712520141 726 False 652.000000 652 83.039000 9 738 1 chr2A.!!$F1 729
23 TraesCS1D01G356100 chr2D 601984567 601985206 639 True 490.000000 490 80.775000 104 738 1 chr2D.!!$R1 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 548 0.519519 CGGTTTGCCAAACGCTGATA 59.480 50.000 13.75 0.0 42.29 2.15 F
674 687 1.382009 TATGCAGAGGCCGGGTGTA 60.382 57.895 2.18 0.0 40.13 2.90 F
1804 1915 0.037232 GGTGGACCAGAAGAAGACGG 60.037 60.000 0.00 0.0 35.64 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1735 1819 2.037367 CTCCTGGACCGGGACAGA 59.963 66.667 24.17 12.21 33.41 3.41 R
1857 1977 2.359850 TCCAACGACTGCATGGCC 60.360 61.111 0.00 0.00 34.13 5.36 R
3339 3933 1.005215 ACATGGGCAGCTAAGCTCTTT 59.995 47.619 0.00 0.00 36.40 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.776810 TGATTCCTTTGGGCCTGTCA 59.223 50.000 4.53 0.00 0.00 3.58
29 30 1.146774 TGATTCCTTTGGGCCTGTCAA 59.853 47.619 4.53 0.00 0.00 3.18
38 39 1.259840 GGGCCTGTCAATGGTTGCAT 61.260 55.000 0.84 0.00 0.00 3.96
277 282 2.438614 CCCTGTCTCGAGCTCCGA 60.439 66.667 7.81 8.06 46.35 4.55
517 525 3.880490 GGTTGGTGCGAATATGGTCATTA 59.120 43.478 0.00 0.00 0.00 1.90
522 530 4.151070 GTGCGAATATGGTCATTATTGCG 58.849 43.478 0.00 0.00 0.00 4.85
536 544 2.362329 ATTGCGGTTTGCCAAACGCT 62.362 50.000 29.75 11.37 45.60 5.07
540 548 0.519519 CGGTTTGCCAAACGCTGATA 59.480 50.000 13.75 0.00 42.29 2.15
618 627 5.378292 TGACTTTGCAATTTATTGGCGTA 57.622 34.783 0.00 0.00 38.21 4.42
633 646 4.895224 TGGCGTATTTTGTGTGTGTTAA 57.105 36.364 0.00 0.00 0.00 2.01
674 687 1.382009 TATGCAGAGGCCGGGTGTA 60.382 57.895 2.18 0.00 40.13 2.90
738 751 3.578282 CCAATAAAAGCCACCCTTTGTCT 59.422 43.478 0.00 0.00 42.82 3.41
739 752 4.040339 CCAATAAAAGCCACCCTTTGTCTT 59.960 41.667 0.00 0.00 42.82 3.01
753 766 7.337689 CACCCTTTGTCTTATCAATCAAGATGA 59.662 37.037 0.00 0.00 34.67 2.92
770 783 8.272545 TCAAGATGATCAAAACGAAGATTCAT 57.727 30.769 0.00 0.00 0.00 2.57
842 859 4.690719 AATCCGCGCCGTCAACCA 62.691 61.111 0.00 0.00 0.00 3.67
856 873 1.671054 AACCAGCCATGTCGGTTCG 60.671 57.895 5.15 0.00 38.69 3.95
877 894 2.501610 GACGGCTCAGATCCACCC 59.498 66.667 0.00 0.00 0.00 4.61
1736 1820 2.743928 CAGCAAGCCCGTGGAGTC 60.744 66.667 0.00 0.00 0.00 3.36
1804 1915 0.037232 GGTGGACCAGAAGAAGACGG 60.037 60.000 0.00 0.00 35.64 4.79
1806 1917 1.079057 GGACCAGAAGAAGACGGCC 60.079 63.158 0.00 0.00 0.00 6.13
1814 1925 4.440127 GAAGACGGCCGCGGGTAA 62.440 66.667 29.38 0.00 0.00 2.85
1815 1926 4.446413 AAGACGGCCGCGGGTAAG 62.446 66.667 29.38 0.00 0.00 2.34
1839 1959 1.084370 GGCGGATGTCGAAGAAGGTG 61.084 60.000 0.00 0.00 39.69 4.00
2013 2133 4.988598 CTCGCCGCCAAGTGGTGT 62.989 66.667 9.93 0.00 43.33 4.16
2049 2169 4.595538 TTCGACCGCACCACGCTT 62.596 61.111 0.00 0.00 41.76 4.68
2244 2369 3.391382 GAGCTGCCCTACACCCGT 61.391 66.667 0.00 0.00 0.00 5.28
2415 2540 0.463654 GCGGCCAGGATGACAATGTA 60.464 55.000 2.24 0.00 39.69 2.29
2500 2625 4.039357 CGGTCTGCGACGTGTCCT 62.039 66.667 0.00 0.00 32.65 3.85
2501 2626 2.338984 GGTCTGCGACGTGTCCTT 59.661 61.111 0.00 0.00 32.65 3.36
2946 3508 3.573772 CTGGAACCTGCGCGACTCA 62.574 63.158 12.10 0.00 0.00 3.41
3134 3696 5.757320 ACTAGATCTATGCATTGTCAGTTGC 59.243 40.000 3.54 3.53 39.33 4.17
3269 3859 5.701750 TCATGCTTGATTGGAATTGTTTTGG 59.298 36.000 0.00 0.00 0.00 3.28
3302 3893 3.465742 ACTGATCGATCATCACTTGGG 57.534 47.619 27.43 15.61 36.51 4.12
3303 3894 3.033909 ACTGATCGATCATCACTTGGGA 58.966 45.455 27.43 1.65 36.51 4.37
3304 3895 3.069300 ACTGATCGATCATCACTTGGGAG 59.931 47.826 27.43 14.25 36.51 4.30
3314 3908 2.933495 CACTTGGGAGTGCATGAATG 57.067 50.000 0.00 0.00 46.08 2.67
3339 3933 0.961019 GCTGTGCCTTGTGAATTCCA 59.039 50.000 2.27 0.00 0.00 3.53
3361 3956 1.005215 AGAGCTTAGCTGCCCATGTTT 59.995 47.619 13.01 0.00 39.88 2.83
3362 3957 1.821136 GAGCTTAGCTGCCCATGTTTT 59.179 47.619 13.01 0.00 39.88 2.43
3421 4018 5.422012 CCTTATTACCTTGGTTGCTTTCCAT 59.578 40.000 0.00 0.00 34.75 3.41
3429 4026 2.364970 TGGTTGCTTTCCATTGTCCTTG 59.635 45.455 0.00 0.00 0.00 3.61
3431 4028 2.627699 GTTGCTTTCCATTGTCCTTGGA 59.372 45.455 0.00 0.00 41.50 3.53
3456 4053 9.495754 GAAATTCTCTTGATTGCAACTGTATAC 57.504 33.333 0.00 0.00 0.00 1.47
3560 4158 7.420800 CAAGAATGCAGAAACTTACTTGAACT 58.579 34.615 0.00 0.00 36.59 3.01
3574 4172 9.516314 ACTTACTTGAACTTATTGCTTTTTGAC 57.484 29.630 0.00 0.00 0.00 3.18
3594 4192 4.646945 TGACTTCCCATCATCAGAGAGTAC 59.353 45.833 0.00 0.00 0.00 2.73
3595 4193 4.877773 ACTTCCCATCATCAGAGAGTACT 58.122 43.478 0.00 0.00 0.00 2.73
3596 4194 4.892934 ACTTCCCATCATCAGAGAGTACTC 59.107 45.833 15.41 15.41 42.90 2.59
3597 4195 3.838565 TCCCATCATCAGAGAGTACTCC 58.161 50.000 19.38 10.83 43.53 3.85
3598 4196 3.465210 TCCCATCATCAGAGAGTACTCCT 59.535 47.826 19.38 12.90 43.53 3.69
3599 4197 4.665483 TCCCATCATCAGAGAGTACTCCTA 59.335 45.833 19.38 3.05 43.53 2.94
3654 4252 2.073816 CTGTCATGGGTGTTCGGTTAC 58.926 52.381 0.00 0.00 0.00 2.50
3759 4363 4.022935 ACTCATCGTTCATGTGTGCATTTT 60.023 37.500 0.00 0.00 37.73 1.82
3792 4396 2.945447 TATCATGCAGCTTTGGCAAC 57.055 45.000 0.00 0.00 45.60 4.17
3852 4458 2.101783 CTTAAATGGCCTGCACATCCA 58.898 47.619 3.32 0.00 0.00 3.41
3862 4469 2.713863 TGCACATCCACTATGCATCA 57.286 45.000 0.19 0.00 44.17 3.07
3863 4470 2.567985 TGCACATCCACTATGCATCAG 58.432 47.619 0.19 1.88 44.17 2.90
3883 4490 9.254133 GCATCAGCATTATATAGTAGTATGTGG 57.746 37.037 0.00 0.00 41.58 4.17
4087 4702 2.385803 TCTGCAGATGCTGATCTCTCA 58.614 47.619 13.74 0.00 42.71 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.713967 GCTGGCCGATGCAACCATT 61.714 57.895 9.84 0.00 40.13 3.16
29 30 3.142838 GCTGGCCGATGCAACCAT 61.143 61.111 9.84 0.00 40.13 3.55
38 39 4.722700 GCTCCAAAGGCTGGCCGA 62.723 66.667 5.93 0.00 45.98 5.54
181 183 1.734137 CCATGTAGCTACGACGGCT 59.266 57.895 18.74 1.38 43.02 5.52
277 282 4.593634 GGTATCATACCTAGGCTTTCACCT 59.406 45.833 9.30 0.00 45.52 4.00
517 525 1.953642 GCGTTTGGCAAACCGCAAT 60.954 52.632 33.64 0.00 45.17 3.56
610 619 4.314740 AACACACACAAAATACGCCAAT 57.685 36.364 0.00 0.00 0.00 3.16
618 627 5.580297 CAGCCAACTTTAACACACACAAAAT 59.420 36.000 0.00 0.00 0.00 1.82
674 687 4.517285 AGGATACAAAACACGATGAGCAT 58.483 39.130 0.00 0.00 41.41 3.79
738 751 9.992910 CTTCGTTTTGATCATCTTGATTGATAA 57.007 29.630 0.00 0.00 37.20 1.75
739 752 9.382275 TCTTCGTTTTGATCATCTTGATTGATA 57.618 29.630 0.00 0.00 37.20 2.15
753 766 5.808540 CCAATGCATGAATCTTCGTTTTGAT 59.191 36.000 0.00 0.00 0.00 2.57
842 859 2.047274 CACCGAACCGACATGGCT 60.047 61.111 0.00 0.00 43.94 4.75
856 873 2.359169 TGGATCTGAGCCGTCCACC 61.359 63.158 7.54 0.00 37.12 4.61
877 894 3.450115 GGACGACGGAGGGGTGAG 61.450 72.222 0.00 0.00 0.00 3.51
895 912 5.343593 GGCTCGTTCTTTCGATATATCTGTG 59.656 44.000 10.93 0.00 39.12 3.66
896 913 5.462405 GGCTCGTTCTTTCGATATATCTGT 58.538 41.667 10.93 0.00 39.12 3.41
1107 1180 3.296836 TCGAGGAACGGGTGCGAA 61.297 61.111 0.00 0.00 42.82 4.70
1735 1819 2.037367 CTCCTGGACCGGGACAGA 59.963 66.667 24.17 12.21 33.41 3.41
1736 1820 3.775654 GCTCCTGGACCGGGACAG 61.776 72.222 18.94 17.82 33.41 3.51
1857 1977 2.359850 TCCAACGACTGCATGGCC 60.360 61.111 0.00 0.00 34.13 5.36
2013 2133 2.680352 GACGAGCCTGGAGTGGGA 60.680 66.667 0.00 0.00 0.00 4.37
2391 2516 3.845259 TCATCCTGGCCGCGGTAC 61.845 66.667 28.70 20.54 0.00 3.34
2415 2540 4.827087 CGCCACTGCAGCTCCGAT 62.827 66.667 15.27 0.00 37.32 4.18
2500 2625 2.747460 GGTGCCGCTCATGCTCAA 60.747 61.111 0.00 0.00 36.97 3.02
2501 2626 4.783621 GGGTGCCGCTCATGCTCA 62.784 66.667 0.00 0.00 36.97 4.26
2946 3508 2.355481 GTCACCGGCGTCGACTTT 60.355 61.111 12.93 0.00 39.00 2.66
3118 3680 3.623703 AGATGGCAACTGACAATGCATA 58.376 40.909 0.00 4.18 44.32 3.14
3134 3696 3.937706 CAGACCAACTAAGCTGAAGATGG 59.062 47.826 18.70 18.70 41.39 3.51
3269 3859 7.946655 TGATCGATCAGTACATTGGATAAAC 57.053 36.000 23.99 0.00 32.11 2.01
3302 3893 3.379372 ACAGCCAATACATTCATGCACTC 59.621 43.478 0.00 0.00 0.00 3.51
3303 3894 3.129813 CACAGCCAATACATTCATGCACT 59.870 43.478 0.00 0.00 0.00 4.40
3304 3895 3.441163 CACAGCCAATACATTCATGCAC 58.559 45.455 0.00 0.00 0.00 4.57
3339 3933 1.005215 ACATGGGCAGCTAAGCTCTTT 59.995 47.619 0.00 0.00 36.40 2.52
3361 3956 7.286775 ACAAAAGACCTATGCTAACCAAGAAAA 59.713 33.333 0.00 0.00 0.00 2.29
3362 3957 6.775629 ACAAAAGACCTATGCTAACCAAGAAA 59.224 34.615 0.00 0.00 0.00 2.52
3379 3974 4.483476 AAGGTACGAATGCACAAAAGAC 57.517 40.909 0.00 0.00 0.00 3.01
3421 4018 6.517194 GCAATCAAGAGAATTTCCAAGGACAA 60.517 38.462 0.00 0.00 0.00 3.18
3429 4026 5.776744 ACAGTTGCAATCAAGAGAATTTCC 58.223 37.500 0.59 0.00 31.93 3.13
3431 4028 9.013229 TGTATACAGTTGCAATCAAGAGAATTT 57.987 29.630 0.59 0.00 31.93 1.82
3456 4053 1.539929 GCAGCTCTACCTATGCCAGTG 60.540 57.143 0.00 0.00 32.49 3.66
3560 4158 6.662865 TGATGGGAAGTCAAAAAGCAATAA 57.337 33.333 0.00 0.00 0.00 1.40
3574 4172 4.280677 GGAGTACTCTCTGATGATGGGAAG 59.719 50.000 21.88 0.00 40.29 3.46
3596 4194 7.174599 GGAATTCAGTGATCATTCCTTCATAGG 59.825 40.741 21.88 0.00 41.94 2.57
3597 4195 7.095313 CGGAATTCAGTGATCATTCCTTCATAG 60.095 40.741 24.49 11.30 42.70 2.23
3598 4196 6.707608 CGGAATTCAGTGATCATTCCTTCATA 59.292 38.462 24.49 0.00 42.70 2.15
3599 4197 5.530171 CGGAATTCAGTGATCATTCCTTCAT 59.470 40.000 24.49 0.00 42.70 2.57
3654 4252 7.989826 AGTCCGAATTCATTCAGAAAATAAGG 58.010 34.615 6.22 0.00 40.22 2.69
3679 4277 6.616947 CAACAGTTCAGACAACTTTTACCAA 58.383 36.000 0.00 0.00 0.00 3.67
3759 4363 5.335897 GCTGCATGATAAAACAGAGAAACCA 60.336 40.000 0.00 0.00 31.67 3.67
3870 4477 9.484806 ACCAAACTACTAACCACATACTACTAT 57.515 33.333 0.00 0.00 0.00 2.12
3871 4478 8.884124 ACCAAACTACTAACCACATACTACTA 57.116 34.615 0.00 0.00 0.00 1.82
3872 4479 7.787623 ACCAAACTACTAACCACATACTACT 57.212 36.000 0.00 0.00 0.00 2.57
3873 4480 8.743714 AGTACCAAACTACTAACCACATACTAC 58.256 37.037 0.00 0.00 36.36 2.73
3874 4481 8.742777 CAGTACCAAACTACTAACCACATACTA 58.257 37.037 0.00 0.00 35.76 1.82
3875 4482 7.234166 ACAGTACCAAACTACTAACCACATACT 59.766 37.037 0.00 0.00 35.76 2.12
3876 4483 7.381323 ACAGTACCAAACTACTAACCACATAC 58.619 38.462 0.00 0.00 35.76 2.39
3877 4484 7.543359 ACAGTACCAAACTACTAACCACATA 57.457 36.000 0.00 0.00 35.76 2.29
3878 4485 6.429521 ACAGTACCAAACTACTAACCACAT 57.570 37.500 0.00 0.00 35.76 3.21
3879 4486 5.874897 ACAGTACCAAACTACTAACCACA 57.125 39.130 0.00 0.00 35.76 4.17
3880 4487 8.837788 AATAACAGTACCAAACTACTAACCAC 57.162 34.615 0.00 0.00 35.76 4.16
3976 4591 6.588204 TCAGTAACTCCACTGTTAAATGTGT 58.412 36.000 3.41 0.00 45.11 3.72
3999 4614 5.174943 CCACTGTTCGCCAAAATTTAGTTTC 59.825 40.000 0.00 0.00 0.00 2.78
4087 4702 2.421424 GCGGATGAGAGCAATTTGTTCT 59.579 45.455 14.68 14.68 40.72 3.01
4088 4703 2.478539 GGCGGATGAGAGCAATTTGTTC 60.479 50.000 5.20 5.20 34.54 3.18
4094 4709 1.449353 GAGGGCGGATGAGAGCAAT 59.551 57.895 0.00 0.00 34.54 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.