Multiple sequence alignment - TraesCS1D01G356000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G356000 chr1D 100.000 4153 0 0 1 4153 440412405 440408253 0.000000e+00 7670.0
1 TraesCS1D01G356000 chr1D 92.164 587 32 4 1 584 458884817 458884242 0.000000e+00 817.0
2 TraesCS1D01G356000 chr1D 88.889 81 5 2 1895 1971 433017454 433017534 3.420000e-16 97.1
3 TraesCS1D01G356000 chr1B 91.897 975 44 18 2730 3688 597831448 597830493 0.000000e+00 1330.0
4 TraesCS1D01G356000 chr1B 90.228 1054 49 22 861 1889 597833426 597832402 0.000000e+00 1327.0
5 TraesCS1D01G356000 chr1B 89.169 674 54 11 1979 2640 597832121 597831455 0.000000e+00 822.0
6 TraesCS1D01G356000 chr1B 89.826 403 23 3 3769 4153 597830438 597830036 6.200000e-138 501.0
7 TraesCS1D01G356000 chr1B 84.932 219 28 4 583 799 236530371 236530586 2.510000e-52 217.0
8 TraesCS1D01G356000 chr1B 84.375 224 27 6 583 802 457697516 457697297 3.250000e-51 213.0
9 TraesCS1D01G356000 chr1A 89.128 1067 66 21 844 1879 537530665 537531712 0.000000e+00 1282.0
10 TraesCS1D01G356000 chr1A 89.300 729 65 5 2730 3445 537532826 537533554 0.000000e+00 902.0
11 TraesCS1D01G356000 chr1A 88.399 681 61 6 1971 2640 537532146 537532819 0.000000e+00 804.0
12 TraesCS1D01G356000 chr1A 92.523 535 22 6 1 519 507547591 507548123 0.000000e+00 750.0
13 TraesCS1D01G356000 chr1A 88.596 114 11 1 3477 3588 537536761 537536874 2.010000e-28 137.0
14 TraesCS1D01G356000 chr5D 95.230 587 24 3 1 584 557768918 557768333 0.000000e+00 926.0
15 TraesCS1D01G356000 chr5D 92.164 587 34 3 1 584 425018837 425018260 0.000000e+00 819.0
16 TraesCS1D01G356000 chr5D 88.889 81 5 2 1895 1971 390762879 390762799 3.420000e-16 97.1
17 TraesCS1D01G356000 chr4D 92.977 598 26 4 1 582 439788038 439788635 0.000000e+00 857.0
18 TraesCS1D01G356000 chr4D 92.833 586 29 4 1 583 503480096 503480671 0.000000e+00 837.0
19 TraesCS1D01G356000 chr4D 83.562 219 31 3 583 799 142879653 142879438 2.530000e-47 200.0
20 TraesCS1D01G356000 chr4D 92.308 78 5 1 1894 1970 21876132 21876055 4.390000e-20 110.0
21 TraesCS1D01G356000 chr3D 92.965 597 25 5 1 580 397772013 397771417 0.000000e+00 854.0
22 TraesCS1D01G356000 chr3D 91.267 584 38 8 1 580 428600467 428599893 0.000000e+00 784.0
23 TraesCS1D01G356000 chr3D 85.520 221 28 3 583 802 70476300 70476083 1.160000e-55 228.0
24 TraesCS1D01G356000 chr3D 97.872 94 2 0 2637 2730 65607220 65607313 3.320000e-36 163.0
25 TraesCS1D01G356000 chr2D 91.980 586 31 8 1 582 15786895 15786322 0.000000e+00 808.0
26 TraesCS1D01G356000 chr2D 88.527 584 54 6 1 580 139735434 139736008 0.000000e+00 695.0
27 TraesCS1D01G356000 chr2D 89.888 445 41 3 144 584 142436704 142436260 1.680000e-158 569.0
28 TraesCS1D01G356000 chr2D 91.379 116 5 5 2633 2744 434348752 434348638 2.000000e-33 154.0
29 TraesCS1D01G356000 chr2D 89.412 85 5 2 1886 1967 475093036 475092953 2.040000e-18 104.0
30 TraesCS1D01G356000 chr7A 89.420 586 43 7 1 580 78105858 78106430 0.000000e+00 721.0
31 TraesCS1D01G356000 chr7B 88.508 583 55 3 1 580 291553646 291554219 0.000000e+00 695.0
32 TraesCS1D01G356000 chr7B 84.444 225 30 3 580 802 161190961 161191182 2.510000e-52 217.0
33 TraesCS1D01G356000 chr7B 83.482 224 33 3 583 805 89696361 89696581 5.440000e-49 206.0
34 TraesCS1D01G356000 chr7D 85.135 222 28 3 583 802 180336281 180336063 5.400000e-54 222.0
35 TraesCS1D01G356000 chr7D 88.889 81 5 2 1895 1971 249443703 249443783 3.420000e-16 97.1
36 TraesCS1D01G356000 chr7D 88.608 79 6 2 1891 1969 392257742 392257817 4.420000e-15 93.5
37 TraesCS1D01G356000 chr4B 84.793 217 30 2 583 799 398968535 398968748 9.040000e-52 215.0
38 TraesCS1D01G356000 chr6D 83.784 222 31 4 583 802 300522917 300522699 5.440000e-49 206.0
39 TraesCS1D01G356000 chr6D 97.872 94 2 0 2640 2733 95714145 95714238 3.320000e-36 163.0
40 TraesCS1D01G356000 chr5A 97.917 96 2 0 2636 2731 27637145 27637050 2.570000e-37 167.0
41 TraesCS1D01G356000 chr5A 95.050 101 4 1 2633 2732 677007 676907 1.550000e-34 158.0
42 TraesCS1D01G356000 chr2B 97.872 94 2 0 2640 2733 653585438 653585345 3.320000e-36 163.0
43 TraesCS1D01G356000 chr2B 95.098 102 4 1 2630 2730 653585332 653585433 4.300000e-35 159.0
44 TraesCS1D01G356000 chr3A 97.849 93 2 0 2638 2730 86792943 86793035 1.190000e-35 161.0
45 TraesCS1D01G356000 chr2A 91.892 111 7 2 2637 2745 560782162 560782272 2.000000e-33 154.0
46 TraesCS1D01G356000 chr2A 88.889 81 5 2 1895 1971 117530139 117530059 3.420000e-16 97.1
47 TraesCS1D01G356000 chr5B 90.361 83 8 0 1884 1966 583296679 583296597 4.390000e-20 110.0
48 TraesCS1D01G356000 chr6A 90.541 74 4 2 1894 1967 114239040 114238970 1.230000e-15 95.3
49 TraesCS1D01G356000 chr4A 86.207 58 8 0 3713 3770 691306325 691306382 3.470000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G356000 chr1D 440408253 440412405 4152 True 7670.00 7670 100.00000 1 4153 1 chr1D.!!$R1 4152
1 TraesCS1D01G356000 chr1D 458884242 458884817 575 True 817.00 817 92.16400 1 584 1 chr1D.!!$R2 583
2 TraesCS1D01G356000 chr1B 597830036 597833426 3390 True 995.00 1330 90.28000 861 4153 4 chr1B.!!$R2 3292
3 TraesCS1D01G356000 chr1A 537530665 537536874 6209 False 781.25 1282 88.85575 844 3588 4 chr1A.!!$F2 2744
4 TraesCS1D01G356000 chr1A 507547591 507548123 532 False 750.00 750 92.52300 1 519 1 chr1A.!!$F1 518
5 TraesCS1D01G356000 chr5D 557768333 557768918 585 True 926.00 926 95.23000 1 584 1 chr5D.!!$R3 583
6 TraesCS1D01G356000 chr5D 425018260 425018837 577 True 819.00 819 92.16400 1 584 1 chr5D.!!$R2 583
7 TraesCS1D01G356000 chr4D 439788038 439788635 597 False 857.00 857 92.97700 1 582 1 chr4D.!!$F1 581
8 TraesCS1D01G356000 chr4D 503480096 503480671 575 False 837.00 837 92.83300 1 583 1 chr4D.!!$F2 582
9 TraesCS1D01G356000 chr3D 397771417 397772013 596 True 854.00 854 92.96500 1 580 1 chr3D.!!$R2 579
10 TraesCS1D01G356000 chr3D 428599893 428600467 574 True 784.00 784 91.26700 1 580 1 chr3D.!!$R3 579
11 TraesCS1D01G356000 chr2D 15786322 15786895 573 True 808.00 808 91.98000 1 582 1 chr2D.!!$R1 581
12 TraesCS1D01G356000 chr2D 139735434 139736008 574 False 695.00 695 88.52700 1 580 1 chr2D.!!$F1 579
13 TraesCS1D01G356000 chr7A 78105858 78106430 572 False 721.00 721 89.42000 1 580 1 chr7A.!!$F1 579
14 TraesCS1D01G356000 chr7B 291553646 291554219 573 False 695.00 695 88.50800 1 580 1 chr7B.!!$F3 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 819 0.041312 CTTTGACGAGGCAACGTTGG 60.041 55.0 28.33 14.7 46.52 3.77 F
1813 1893 0.179000 CTCAGCTGTATGGGGTGGAC 59.821 60.0 14.67 0.0 33.61 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1825 1905 0.453390 GAATTGCCTCCAAGAAGCGG 59.547 55.0 0.0 0.0 33.8 5.52 R
3473 6833 0.179163 GCAATGCGAACTACAAGGCC 60.179 55.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.891919 CCGGTATGGGACGCAATGG 60.892 63.158 0.00 0.00 0.00 3.16
293 298 8.705594 TCTTTTGGTAGAGGGATTTGATACTAG 58.294 37.037 0.00 0.00 0.00 2.57
337 342 6.856135 TGAAACTATGATGATGATGCACTC 57.144 37.500 0.00 0.00 0.00 3.51
345 351 6.535274 TGATGATGATGCACTCTATTTTCG 57.465 37.500 0.00 0.00 0.00 3.46
351 357 8.124823 TGATGATGCACTCTATTTTCGAATTTC 58.875 33.333 0.00 0.00 0.00 2.17
584 619 6.814506 CATCTATTGGAAATGCTCTAAGGG 57.185 41.667 0.00 0.00 0.00 3.95
585 620 5.975988 TCTATTGGAAATGCTCTAAGGGT 57.024 39.130 0.00 0.00 0.00 4.34
586 621 5.684704 TCTATTGGAAATGCTCTAAGGGTG 58.315 41.667 0.00 0.00 0.00 4.61
587 622 3.806949 TTGGAAATGCTCTAAGGGTGT 57.193 42.857 0.00 0.00 0.00 4.16
588 623 3.071874 TGGAAATGCTCTAAGGGTGTG 57.928 47.619 0.00 0.00 0.00 3.82
589 624 2.375174 TGGAAATGCTCTAAGGGTGTGT 59.625 45.455 0.00 0.00 0.00 3.72
590 625 3.181434 TGGAAATGCTCTAAGGGTGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
591 626 3.826729 GGAAATGCTCTAAGGGTGTGTTT 59.173 43.478 0.00 0.00 0.00 2.83
592 627 4.321230 GGAAATGCTCTAAGGGTGTGTTTG 60.321 45.833 0.00 0.00 0.00 2.93
593 628 3.788227 ATGCTCTAAGGGTGTGTTTGA 57.212 42.857 0.00 0.00 0.00 2.69
594 629 3.569194 TGCTCTAAGGGTGTGTTTGAA 57.431 42.857 0.00 0.00 0.00 2.69
595 630 4.098914 TGCTCTAAGGGTGTGTTTGAAT 57.901 40.909 0.00 0.00 0.00 2.57
596 631 4.469657 TGCTCTAAGGGTGTGTTTGAATT 58.530 39.130 0.00 0.00 0.00 2.17
597 632 5.626142 TGCTCTAAGGGTGTGTTTGAATTA 58.374 37.500 0.00 0.00 0.00 1.40
598 633 6.245408 TGCTCTAAGGGTGTGTTTGAATTAT 58.755 36.000 0.00 0.00 0.00 1.28
599 634 6.150976 TGCTCTAAGGGTGTGTTTGAATTATG 59.849 38.462 0.00 0.00 0.00 1.90
600 635 6.404734 GCTCTAAGGGTGTGTTTGAATTATGG 60.405 42.308 0.00 0.00 0.00 2.74
601 636 4.535526 AAGGGTGTGTTTGAATTATGGC 57.464 40.909 0.00 0.00 0.00 4.40
602 637 2.831526 AGGGTGTGTTTGAATTATGGCC 59.168 45.455 0.00 0.00 0.00 5.36
603 638 2.564947 GGGTGTGTTTGAATTATGGCCA 59.435 45.455 8.56 8.56 0.00 5.36
604 639 3.007398 GGGTGTGTTTGAATTATGGCCAA 59.993 43.478 10.96 0.00 0.00 4.52
605 640 4.503991 GGGTGTGTTTGAATTATGGCCAAA 60.504 41.667 10.96 6.13 0.00 3.28
606 641 5.059833 GGTGTGTTTGAATTATGGCCAAAA 58.940 37.500 10.96 0.66 32.44 2.44
607 642 5.704978 GGTGTGTTTGAATTATGGCCAAAAT 59.295 36.000 10.96 0.00 32.44 1.82
608 643 6.348376 GGTGTGTTTGAATTATGGCCAAAATG 60.348 38.462 10.96 0.00 32.44 2.32
609 644 5.180868 TGTGTTTGAATTATGGCCAAAATGC 59.819 36.000 10.96 0.00 32.44 3.56
610 645 5.180868 GTGTTTGAATTATGGCCAAAATGCA 59.819 36.000 10.96 2.75 32.44 3.96
611 646 5.180868 TGTTTGAATTATGGCCAAAATGCAC 59.819 36.000 10.96 0.60 32.44 4.57
612 647 3.871485 TGAATTATGGCCAAAATGCACC 58.129 40.909 10.96 0.00 0.00 5.01
613 648 3.205338 GAATTATGGCCAAAATGCACCC 58.795 45.455 10.96 0.00 0.00 4.61
614 649 1.949799 TTATGGCCAAAATGCACCCT 58.050 45.000 10.96 0.00 0.00 4.34
615 650 2.836636 TATGGCCAAAATGCACCCTA 57.163 45.000 10.96 0.00 0.00 3.53
616 651 2.179377 ATGGCCAAAATGCACCCTAT 57.821 45.000 10.96 0.00 0.00 2.57
617 652 1.484038 TGGCCAAAATGCACCCTATC 58.516 50.000 0.61 0.00 0.00 2.08
618 653 1.272928 TGGCCAAAATGCACCCTATCA 60.273 47.619 0.61 0.00 0.00 2.15
619 654 1.830477 GGCCAAAATGCACCCTATCAA 59.170 47.619 0.00 0.00 0.00 2.57
620 655 2.235898 GGCCAAAATGCACCCTATCAAA 59.764 45.455 0.00 0.00 0.00 2.69
621 656 3.307339 GGCCAAAATGCACCCTATCAAAA 60.307 43.478 0.00 0.00 0.00 2.44
622 657 4.516323 GCCAAAATGCACCCTATCAAAAT 58.484 39.130 0.00 0.00 0.00 1.82
623 658 4.943093 GCCAAAATGCACCCTATCAAAATT 59.057 37.500 0.00 0.00 0.00 1.82
624 659 5.415389 GCCAAAATGCACCCTATCAAAATTT 59.585 36.000 0.00 0.00 0.00 1.82
625 660 6.072008 GCCAAAATGCACCCTATCAAAATTTT 60.072 34.615 0.00 0.00 0.00 1.82
626 661 7.306953 CCAAAATGCACCCTATCAAAATTTTG 58.693 34.615 22.40 22.40 40.58 2.44
627 662 7.306953 CAAAATGCACCCTATCAAAATTTTGG 58.693 34.615 26.45 15.04 38.74 3.28
628 663 5.760484 ATGCACCCTATCAAAATTTTGGT 57.240 34.783 26.45 23.34 38.66 3.67
629 664 5.146010 TGCACCCTATCAAAATTTTGGTC 57.854 39.130 26.45 10.40 38.66 4.02
630 665 4.590647 TGCACCCTATCAAAATTTTGGTCA 59.409 37.500 26.45 12.63 38.66 4.02
631 666 5.248020 TGCACCCTATCAAAATTTTGGTCAT 59.752 36.000 26.45 16.87 38.66 3.06
632 667 5.581874 GCACCCTATCAAAATTTTGGTCATG 59.418 40.000 26.45 17.42 38.66 3.07
633 668 6.108015 CACCCTATCAAAATTTTGGTCATGG 58.892 40.000 26.45 21.75 38.66 3.66
634 669 5.784906 ACCCTATCAAAATTTTGGTCATGGT 59.215 36.000 26.45 22.28 38.66 3.55
635 670 6.070824 ACCCTATCAAAATTTTGGTCATGGTC 60.071 38.462 26.45 0.00 38.66 4.02
636 671 6.340522 CCTATCAAAATTTTGGTCATGGTCC 58.659 40.000 26.45 0.00 38.66 4.46
637 672 5.822132 ATCAAAATTTTGGTCATGGTCCA 57.178 34.783 26.45 7.43 38.66 4.02
638 673 5.620738 TCAAAATTTTGGTCATGGTCCAA 57.379 34.783 26.45 15.67 42.29 3.53
644 679 4.870123 TTTGGTCATGGTCCAAAGATTG 57.130 40.909 22.61 0.00 45.99 2.67
661 696 4.886579 AGATTGGTCTTTGTTTGGATTGC 58.113 39.130 0.00 0.00 0.00 3.56
662 697 4.590222 AGATTGGTCTTTGTTTGGATTGCT 59.410 37.500 0.00 0.00 0.00 3.91
663 698 3.731652 TGGTCTTTGTTTGGATTGCTG 57.268 42.857 0.00 0.00 0.00 4.41
664 699 2.224018 TGGTCTTTGTTTGGATTGCTGC 60.224 45.455 0.00 0.00 0.00 5.25
665 700 2.407090 GTCTTTGTTTGGATTGCTGCC 58.593 47.619 0.00 0.00 0.00 4.85
666 701 2.036346 GTCTTTGTTTGGATTGCTGCCT 59.964 45.455 0.00 0.00 0.00 4.75
667 702 2.699846 TCTTTGTTTGGATTGCTGCCTT 59.300 40.909 0.00 0.00 0.00 4.35
668 703 3.134442 TCTTTGTTTGGATTGCTGCCTTT 59.866 39.130 0.00 0.00 0.00 3.11
669 704 3.557228 TTGTTTGGATTGCTGCCTTTT 57.443 38.095 0.00 0.00 0.00 2.27
670 705 3.557228 TGTTTGGATTGCTGCCTTTTT 57.443 38.095 0.00 0.00 0.00 1.94
693 728 4.569943 TGACAAGTCAATGAACTCTAGCC 58.430 43.478 0.00 0.00 36.53 3.93
694 729 4.040339 TGACAAGTCAATGAACTCTAGCCA 59.960 41.667 0.00 0.00 36.53 4.75
695 730 4.973168 ACAAGTCAATGAACTCTAGCCAA 58.027 39.130 0.00 0.00 0.00 4.52
696 731 4.757149 ACAAGTCAATGAACTCTAGCCAAC 59.243 41.667 0.00 0.00 0.00 3.77
697 732 4.899352 AGTCAATGAACTCTAGCCAACT 57.101 40.909 0.00 0.00 0.00 3.16
698 733 5.234466 AGTCAATGAACTCTAGCCAACTT 57.766 39.130 0.00 0.00 0.00 2.66
699 734 5.241662 AGTCAATGAACTCTAGCCAACTTC 58.758 41.667 0.00 0.00 0.00 3.01
700 735 4.997395 GTCAATGAACTCTAGCCAACTTCA 59.003 41.667 0.00 0.00 0.00 3.02
701 736 5.121454 GTCAATGAACTCTAGCCAACTTCAG 59.879 44.000 0.00 0.00 0.00 3.02
702 737 4.899352 ATGAACTCTAGCCAACTTCAGT 57.101 40.909 0.00 0.00 0.00 3.41
703 738 4.689612 TGAACTCTAGCCAACTTCAGTT 57.310 40.909 0.00 0.00 39.12 3.16
704 739 5.036117 TGAACTCTAGCCAACTTCAGTTT 57.964 39.130 0.00 0.00 35.83 2.66
705 740 6.169557 TGAACTCTAGCCAACTTCAGTTTA 57.830 37.500 0.00 0.00 35.83 2.01
706 741 6.769512 TGAACTCTAGCCAACTTCAGTTTAT 58.230 36.000 0.00 0.00 35.83 1.40
707 742 7.224297 TGAACTCTAGCCAACTTCAGTTTATT 58.776 34.615 0.00 0.00 35.83 1.40
708 743 7.719633 TGAACTCTAGCCAACTTCAGTTTATTT 59.280 33.333 0.00 0.00 35.83 1.40
709 744 9.216117 GAACTCTAGCCAACTTCAGTTTATTTA 57.784 33.333 0.00 0.00 35.83 1.40
710 745 9.740710 AACTCTAGCCAACTTCAGTTTATTTAT 57.259 29.630 0.00 0.00 35.83 1.40
711 746 9.740710 ACTCTAGCCAACTTCAGTTTATTTATT 57.259 29.630 0.00 0.00 35.83 1.40
738 773 8.774890 TTTTACCAATGTTGATCAAATCATGG 57.225 30.769 20.67 20.67 40.10 3.66
739 774 5.347620 ACCAATGTTGATCAAATCATGGG 57.652 39.130 22.43 22.43 39.10 4.00
740 775 4.124238 CCAATGTTGATCAAATCATGGGC 58.876 43.478 15.89 1.55 39.39 5.36
741 776 4.383226 CCAATGTTGATCAAATCATGGGCA 60.383 41.667 15.89 6.56 39.39 5.36
742 777 5.179533 CAATGTTGATCAAATCATGGGCAA 58.820 37.500 10.35 0.00 39.39 4.52
743 778 4.191033 TGTTGATCAAATCATGGGCAAC 57.809 40.909 10.35 0.00 40.61 4.17
769 804 3.667087 TGGCTAGCCAACGCTTTG 58.333 55.556 34.27 0.00 45.55 2.77
770 805 1.072332 TGGCTAGCCAACGCTTTGA 59.928 52.632 34.27 7.32 45.55 2.69
771 806 1.234615 TGGCTAGCCAACGCTTTGAC 61.235 55.000 34.27 2.93 45.55 3.18
772 807 1.132640 GCTAGCCAACGCTTTGACG 59.867 57.895 2.29 0.00 45.55 4.35
773 808 1.289109 GCTAGCCAACGCTTTGACGA 61.289 55.000 2.29 0.00 45.55 4.20
774 809 0.716108 CTAGCCAACGCTTTGACGAG 59.284 55.000 4.19 0.00 45.55 4.18
775 810 0.669318 TAGCCAACGCTTTGACGAGG 60.669 55.000 4.19 0.00 45.55 4.63
776 811 2.556287 CCAACGCTTTGACGAGGC 59.444 61.111 4.19 0.00 34.24 4.70
777 812 2.250939 CCAACGCTTTGACGAGGCA 61.251 57.895 4.19 0.00 34.24 4.75
778 813 1.646540 CAACGCTTTGACGAGGCAA 59.353 52.632 0.00 0.00 34.24 4.52
779 814 0.657368 CAACGCTTTGACGAGGCAAC 60.657 55.000 0.00 0.00 34.24 4.17
780 815 2.101209 AACGCTTTGACGAGGCAACG 62.101 55.000 0.00 0.00 38.02 4.10
782 817 1.647084 GCTTTGACGAGGCAACGTT 59.353 52.632 10.59 0.00 46.52 3.99
783 818 0.657368 GCTTTGACGAGGCAACGTTG 60.657 55.000 23.90 23.90 46.52 4.10
784 819 0.041312 CTTTGACGAGGCAACGTTGG 60.041 55.000 28.33 14.70 46.52 3.77
785 820 1.440938 TTTGACGAGGCAACGTTGGG 61.441 55.000 28.33 5.81 46.52 4.12
786 821 3.723348 GACGAGGCAACGTTGGGC 61.723 66.667 28.33 20.26 46.52 5.36
787 822 4.555709 ACGAGGCAACGTTGGGCA 62.556 61.111 28.33 0.00 44.14 5.36
788 823 3.055719 CGAGGCAACGTTGGGCAT 61.056 61.111 28.33 13.88 46.39 4.40
789 824 1.743623 CGAGGCAACGTTGGGCATA 60.744 57.895 28.33 0.00 46.39 3.14
790 825 1.302383 CGAGGCAACGTTGGGCATAA 61.302 55.000 28.33 0.00 46.39 1.90
791 826 0.885196 GAGGCAACGTTGGGCATAAA 59.115 50.000 28.33 0.00 46.39 1.40
792 827 0.601057 AGGCAACGTTGGGCATAAAC 59.399 50.000 28.33 9.78 46.39 2.01
793 828 0.601057 GGCAACGTTGGGCATAAACT 59.399 50.000 28.33 0.00 0.00 2.66
794 829 1.813786 GGCAACGTTGGGCATAAACTA 59.186 47.619 28.33 0.00 0.00 2.24
795 830 2.229302 GGCAACGTTGGGCATAAACTAA 59.771 45.455 28.33 0.00 0.00 2.24
796 831 3.305471 GGCAACGTTGGGCATAAACTAAA 60.305 43.478 28.33 0.00 0.00 1.85
797 832 3.671459 GCAACGTTGGGCATAAACTAAAC 59.329 43.478 28.33 3.87 0.00 2.01
798 833 4.793353 GCAACGTTGGGCATAAACTAAACA 60.793 41.667 28.33 0.00 0.00 2.83
799 834 4.492791 ACGTTGGGCATAAACTAAACAC 57.507 40.909 0.00 0.00 0.00 3.32
800 835 3.884091 ACGTTGGGCATAAACTAAACACA 59.116 39.130 0.00 0.00 0.00 3.72
801 836 4.223659 CGTTGGGCATAAACTAAACACAC 58.776 43.478 0.00 0.00 0.00 3.82
802 837 4.552355 GTTGGGCATAAACTAAACACACC 58.448 43.478 0.00 0.00 0.00 4.16
803 838 3.158676 TGGGCATAAACTAAACACACCC 58.841 45.455 0.00 0.00 35.29 4.61
804 839 3.181427 TGGGCATAAACTAAACACACCCT 60.181 43.478 0.00 0.00 35.76 4.34
805 840 4.043059 TGGGCATAAACTAAACACACCCTA 59.957 41.667 0.00 0.00 35.76 3.53
806 841 5.011586 GGGCATAAACTAAACACACCCTAA 58.988 41.667 0.00 0.00 31.84 2.69
807 842 5.124936 GGGCATAAACTAAACACACCCTAAG 59.875 44.000 0.00 0.00 31.84 2.18
808 843 5.941647 GGCATAAACTAAACACACCCTAAGA 59.058 40.000 0.00 0.00 0.00 2.10
809 844 6.128090 GGCATAAACTAAACACACCCTAAGAC 60.128 42.308 0.00 0.00 0.00 3.01
810 845 6.653740 GCATAAACTAAACACACCCTAAGACT 59.346 38.462 0.00 0.00 0.00 3.24
811 846 7.174426 GCATAAACTAAACACACCCTAAGACTT 59.826 37.037 0.00 0.00 0.00 3.01
812 847 9.715121 CATAAACTAAACACACCCTAAGACTTA 57.285 33.333 0.00 0.00 0.00 2.24
815 850 9.636789 AAACTAAACACACCCTAAGACTTAAAT 57.363 29.630 0.00 0.00 0.00 1.40
816 851 8.843885 ACTAAACACACCCTAAGACTTAAATC 57.156 34.615 0.00 0.00 0.00 2.17
817 852 7.881751 ACTAAACACACCCTAAGACTTAAATCC 59.118 37.037 0.00 0.00 0.00 3.01
818 853 6.449830 AACACACCCTAAGACTTAAATCCT 57.550 37.500 0.00 0.00 0.00 3.24
819 854 5.805728 ACACACCCTAAGACTTAAATCCTG 58.194 41.667 0.00 0.00 0.00 3.86
820 855 5.546499 ACACACCCTAAGACTTAAATCCTGA 59.454 40.000 0.00 0.00 0.00 3.86
821 856 5.875359 CACACCCTAAGACTTAAATCCTGAC 59.125 44.000 0.00 0.00 0.00 3.51
822 857 5.045797 ACACCCTAAGACTTAAATCCTGACC 60.046 44.000 0.00 0.00 0.00 4.02
823 858 5.045869 CACCCTAAGACTTAAATCCTGACCA 60.046 44.000 0.00 0.00 0.00 4.02
824 859 5.045797 ACCCTAAGACTTAAATCCTGACCAC 60.046 44.000 0.00 0.00 0.00 4.16
825 860 5.109903 CCTAAGACTTAAATCCTGACCACG 58.890 45.833 0.00 0.00 0.00 4.94
826 861 4.884668 AAGACTTAAATCCTGACCACGA 57.115 40.909 0.00 0.00 0.00 4.35
827 862 5.422214 AAGACTTAAATCCTGACCACGAT 57.578 39.130 0.00 0.00 0.00 3.73
828 863 6.540438 AAGACTTAAATCCTGACCACGATA 57.460 37.500 0.00 0.00 0.00 2.92
829 864 6.732896 AGACTTAAATCCTGACCACGATAT 57.267 37.500 0.00 0.00 0.00 1.63
830 865 6.750148 AGACTTAAATCCTGACCACGATATC 58.250 40.000 0.00 0.00 0.00 1.63
831 866 6.323996 AGACTTAAATCCTGACCACGATATCA 59.676 38.462 3.12 0.00 0.00 2.15
832 867 6.281405 ACTTAAATCCTGACCACGATATCAC 58.719 40.000 3.12 0.00 0.00 3.06
833 868 6.098409 ACTTAAATCCTGACCACGATATCACT 59.902 38.462 3.12 0.00 0.00 3.41
834 869 4.592485 AATCCTGACCACGATATCACTC 57.408 45.455 3.12 0.00 0.00 3.51
835 870 3.298686 TCCTGACCACGATATCACTCT 57.701 47.619 3.12 0.00 0.00 3.24
836 871 3.215151 TCCTGACCACGATATCACTCTC 58.785 50.000 3.12 0.00 0.00 3.20
837 872 2.294791 CCTGACCACGATATCACTCTCC 59.705 54.545 3.12 0.00 0.00 3.71
838 873 3.218453 CTGACCACGATATCACTCTCCT 58.782 50.000 3.12 0.00 0.00 3.69
839 874 3.215151 TGACCACGATATCACTCTCCTC 58.785 50.000 3.12 0.00 0.00 3.71
840 875 2.554893 GACCACGATATCACTCTCCTCC 59.445 54.545 3.12 0.00 0.00 4.30
841 876 2.175931 ACCACGATATCACTCTCCTCCT 59.824 50.000 3.12 0.00 0.00 3.69
842 877 2.817258 CCACGATATCACTCTCCTCCTC 59.183 54.545 3.12 0.00 0.00 3.71
848 883 1.680651 CACTCTCCTCCTCGGCACT 60.681 63.158 0.00 0.00 0.00 4.40
859 894 1.581934 CTCGGCACTGTTTCTCAACA 58.418 50.000 0.00 0.00 40.82 3.33
872 907 6.316319 TGTTTCTCAACAAGTAAAAACGACC 58.684 36.000 0.00 0.00 40.10 4.79
1009 1044 5.190132 TCATCAAATTCCAAAATGGCATCCT 59.810 36.000 0.00 0.00 37.47 3.24
1017 1052 4.021916 CCAAAATGGCATCCTCTTCTTCT 58.978 43.478 0.00 0.00 0.00 2.85
1269 1313 1.078567 CTTCCAGCAGGTCAGAGCC 60.079 63.158 0.00 0.00 35.89 4.70
1270 1314 2.849120 CTTCCAGCAGGTCAGAGCCG 62.849 65.000 0.00 0.00 35.89 5.52
1272 1316 4.383861 CAGCAGGTCAGAGCCGCA 62.384 66.667 10.42 0.00 33.01 5.69
1273 1317 4.079850 AGCAGGTCAGAGCCGCAG 62.080 66.667 10.42 0.00 33.01 5.18
1274 1318 4.074526 GCAGGTCAGAGCCGCAGA 62.075 66.667 2.80 0.00 0.00 4.26
1275 1319 2.183811 CAGGTCAGAGCCGCAGAG 59.816 66.667 0.00 0.00 0.00 3.35
1276 1320 3.073735 AGGTCAGAGCCGCAGAGG 61.074 66.667 0.00 0.00 44.97 3.69
1277 1321 3.071206 GGTCAGAGCCGCAGAGGA 61.071 66.667 0.00 0.00 45.00 3.71
1365 1433 4.598894 CCGCTCCCTCGCCTCATG 62.599 72.222 0.00 0.00 0.00 3.07
1381 1453 1.262950 TCATGTTCTTCCGTTGCGTTG 59.737 47.619 0.00 0.00 0.00 4.10
1493 1569 3.289407 TCCACCATTGTTGTCAGTTCA 57.711 42.857 0.00 0.00 0.00 3.18
1568 1646 1.074623 AGATCTCTGGCAGAGGGGG 60.075 63.158 36.81 18.29 42.54 5.40
1695 1775 6.951062 TCATTTTCGGACATTGGCATATTA 57.049 33.333 0.00 0.00 0.00 0.98
1696 1776 6.734137 TCATTTTCGGACATTGGCATATTAC 58.266 36.000 0.00 0.00 0.00 1.89
1697 1777 6.319911 TCATTTTCGGACATTGGCATATTACA 59.680 34.615 0.00 0.00 0.00 2.41
1698 1778 6.707440 TTTTCGGACATTGGCATATTACAT 57.293 33.333 0.00 0.00 0.00 2.29
1699 1779 7.809546 TTTTCGGACATTGGCATATTACATA 57.190 32.000 0.00 0.00 0.00 2.29
1700 1780 7.994425 TTTCGGACATTGGCATATTACATAT 57.006 32.000 0.00 0.00 0.00 1.78
1756 1836 2.421314 GTTGCTGCCAACCCCAAC 59.579 61.111 0.00 0.00 44.37 3.77
1765 1845 1.524165 CAACCCCAACGACACCGAA 60.524 57.895 0.00 0.00 39.50 4.30
1786 1866 4.657436 AGAGTCGATATGGTGTTTCCTC 57.343 45.455 0.00 0.00 37.07 3.71
1788 1868 4.339814 AGAGTCGATATGGTGTTTCCTCTC 59.660 45.833 0.00 0.00 37.07 3.20
1813 1893 0.179000 CTCAGCTGTATGGGGTGGAC 59.821 60.000 14.67 0.00 33.61 4.02
1815 1895 2.189521 GCTGTATGGGGTGGACGG 59.810 66.667 0.00 0.00 0.00 4.79
1816 1896 2.908015 CTGTATGGGGTGGACGGG 59.092 66.667 0.00 0.00 0.00 5.28
1825 1905 2.671963 GTGGACGGGGCAAGGAAC 60.672 66.667 0.00 0.00 0.00 3.62
1906 2161 4.307032 AACACATGCTCCCTCTGTAAAT 57.693 40.909 0.00 0.00 0.00 1.40
1907 2162 5.435686 AACACATGCTCCCTCTGTAAATA 57.564 39.130 0.00 0.00 0.00 1.40
1919 2174 9.360093 CTCCCTCTGTAAATAAATATAAGAGCG 57.640 37.037 0.00 0.00 0.00 5.03
1937 2327 5.169295 AGAGCGTTTAGTGGTGATCTAAAC 58.831 41.667 14.60 14.60 46.29 2.01
1998 2483 9.254133 TGTGTAATTTGTTGTATGAACCAAATG 57.746 29.630 0.00 0.00 0.00 2.32
2021 2506 5.071250 TGTGGTATGGACATAGGACATAACC 59.929 44.000 8.56 8.04 34.66 2.85
2027 2512 3.383825 GGACATAGGACATAACCGTGTCT 59.616 47.826 17.94 0.00 46.02 3.41
2036 2521 4.491676 ACATAACCGTGTCTGACATGTAC 58.508 43.478 24.11 7.51 33.37 2.90
2060 2545 8.080083 ACAACTTTTTGGTACTCTATACAACG 57.920 34.615 0.00 0.00 37.00 4.10
2066 2551 3.053395 TGGTACTCTATACAACGACCCCT 60.053 47.826 0.00 0.00 0.00 4.79
2138 2633 7.672983 TGGTAACTCATTCTGAATTTCACTC 57.327 36.000 0.00 0.00 37.61 3.51
2146 2641 7.000472 TCATTCTGAATTTCACTCTTCAGGTT 59.000 34.615 11.22 0.00 45.41 3.50
2259 2755 7.519168 GCAATGCATATATCTGATCTGATCTGC 60.519 40.741 23.35 23.35 32.24 4.26
2345 2842 3.611766 TTTTCTAGTAGCTCTGGTGGC 57.388 47.619 0.00 0.00 0.00 5.01
2425 2922 7.514784 TCAATTGAACAATCTCTGTGTTGAT 57.485 32.000 5.45 0.00 39.29 2.57
2440 2937 7.639039 TCTGTGTTGATATTTGTGTTCTTGTC 58.361 34.615 0.00 0.00 0.00 3.18
2441 2938 7.281999 TCTGTGTTGATATTTGTGTTCTTGTCA 59.718 33.333 0.00 0.00 0.00 3.58
2457 2954 2.639065 TGTCAAGGCCATTTACGGATC 58.361 47.619 5.01 0.00 0.00 3.36
2466 2963 5.995897 AGGCCATTTACGGATCTTGTAATAC 59.004 40.000 5.01 0.00 32.28 1.89
2484 2981 7.434492 TGTAATACTTGTAGCTGAGCTAATCC 58.566 38.462 16.82 4.64 43.07 3.01
2503 3000 0.721154 CGCGACAAGCTGCTATTTCA 59.279 50.000 0.00 0.00 45.59 2.69
2537 3034 7.141363 GTGCTGTTTCTTTGTAGAATGACATT 58.859 34.615 0.00 0.00 40.01 2.71
2571 3068 5.880054 ATTTTGTACAATCACCTTCCTCG 57.120 39.130 9.56 0.00 0.00 4.63
2580 3077 2.742372 CCTTCCTCGTTGCACCCG 60.742 66.667 0.00 0.00 0.00 5.28
2593 3090 1.279558 TGCACCCGCTTAAGTCCATAA 59.720 47.619 4.02 0.00 39.64 1.90
2594 3091 1.669265 GCACCCGCTTAAGTCCATAAC 59.331 52.381 4.02 0.00 34.30 1.89
2608 3105 7.938140 AAGTCCATAACTTGCAGCTATAAAA 57.062 32.000 0.00 0.00 46.61 1.52
2609 3106 7.938140 AGTCCATAACTTGCAGCTATAAAAA 57.062 32.000 0.00 0.00 33.03 1.94
2636 3133 1.603802 CAACACATCACCGCAGAAAGT 59.396 47.619 0.00 0.00 0.00 2.66
2640 3137 3.250040 ACACATCACCGCAGAAAGTAAAC 59.750 43.478 0.00 0.00 0.00 2.01
2642 3139 4.072131 ACATCACCGCAGAAAGTAAACAT 58.928 39.130 0.00 0.00 0.00 2.71
2643 3140 4.154195 ACATCACCGCAGAAAGTAAACATC 59.846 41.667 0.00 0.00 0.00 3.06
2644 3141 4.002906 TCACCGCAGAAAGTAAACATCT 57.997 40.909 0.00 0.00 0.00 2.90
2645 3142 5.142061 TCACCGCAGAAAGTAAACATCTA 57.858 39.130 0.00 0.00 0.00 1.98
2646 3143 4.927425 TCACCGCAGAAAGTAAACATCTAC 59.073 41.667 0.00 0.00 0.00 2.59
2647 3144 4.929808 CACCGCAGAAAGTAAACATCTACT 59.070 41.667 0.00 0.00 33.41 2.57
2648 3145 5.062308 CACCGCAGAAAGTAAACATCTACTC 59.938 44.000 0.00 0.00 30.67 2.59
2649 3146 4.567159 CCGCAGAAAGTAAACATCTACTCC 59.433 45.833 0.00 0.00 30.67 3.85
2650 3147 4.567159 CGCAGAAAGTAAACATCTACTCCC 59.433 45.833 0.00 0.00 30.67 4.30
2651 3148 5.624738 CGCAGAAAGTAAACATCTACTCCCT 60.625 44.000 0.00 0.00 30.67 4.20
2652 3149 5.813157 GCAGAAAGTAAACATCTACTCCCTC 59.187 44.000 0.00 0.00 30.67 4.30
2653 3150 6.342111 CAGAAAGTAAACATCTACTCCCTCC 58.658 44.000 0.00 0.00 30.67 4.30
2654 3151 5.127356 AGAAAGTAAACATCTACTCCCTCCG 59.873 44.000 0.00 0.00 30.67 4.63
2655 3152 3.978610 AGTAAACATCTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
2656 3153 4.351127 AGTAAACATCTACTCCCTCCGTT 58.649 43.478 0.00 0.00 0.00 4.44
2657 3154 3.889520 AAACATCTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
2658 3155 1.777941 ACATCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
2659 3156 1.006758 ACATCTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
2660 3157 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
2661 3158 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2662 3159 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
2663 3160 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
2664 3161 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
2665 3162 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2666 3163 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2667 3164 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2668 3165 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2669 3166 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2670 3167 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2671 3168 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2672 3169 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2673 3170 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2674 3171 2.471749 CGTTCCAAATTACTCGTCGTGC 60.472 50.000 0.00 0.00 0.00 5.34
2675 3172 2.735134 GTTCCAAATTACTCGTCGTGCT 59.265 45.455 0.00 0.00 0.00 4.40
2676 3173 3.034721 TCCAAATTACTCGTCGTGCTT 57.965 42.857 0.00 0.00 0.00 3.91
2677 3174 3.395639 TCCAAATTACTCGTCGTGCTTT 58.604 40.909 0.00 0.00 0.00 3.51
2678 3175 3.810941 TCCAAATTACTCGTCGTGCTTTT 59.189 39.130 0.00 0.00 0.00 2.27
2679 3176 4.989797 TCCAAATTACTCGTCGTGCTTTTA 59.010 37.500 0.00 0.00 0.00 1.52
2680 3177 5.119588 TCCAAATTACTCGTCGTGCTTTTAG 59.880 40.000 0.00 0.00 0.00 1.85
2681 3178 5.107220 CCAAATTACTCGTCGTGCTTTTAGT 60.107 40.000 0.00 0.00 0.00 2.24
2682 3179 6.360329 CAAATTACTCGTCGTGCTTTTAGTT 58.640 36.000 0.00 0.00 0.00 2.24
2683 3180 5.758570 ATTACTCGTCGTGCTTTTAGTTC 57.241 39.130 0.00 0.00 0.00 3.01
2684 3181 3.088194 ACTCGTCGTGCTTTTAGTTCA 57.912 42.857 0.00 0.00 0.00 3.18
2685 3182 3.450578 ACTCGTCGTGCTTTTAGTTCAA 58.549 40.909 0.00 0.00 0.00 2.69
2686 3183 3.866910 ACTCGTCGTGCTTTTAGTTCAAA 59.133 39.130 0.00 0.00 0.00 2.69
2687 3184 4.510340 ACTCGTCGTGCTTTTAGTTCAAAT 59.490 37.500 0.00 0.00 0.00 2.32
2688 3185 5.007332 ACTCGTCGTGCTTTTAGTTCAAATT 59.993 36.000 0.00 0.00 0.00 1.82
2689 3186 5.812652 TCGTCGTGCTTTTAGTTCAAATTT 58.187 33.333 0.00 0.00 0.00 1.82
2690 3187 5.679355 TCGTCGTGCTTTTAGTTCAAATTTG 59.321 36.000 12.15 12.15 0.00 2.32
2691 3188 5.679355 CGTCGTGCTTTTAGTTCAAATTTGA 59.321 36.000 16.91 16.91 34.92 2.69
2692 3189 6.195613 CGTCGTGCTTTTAGTTCAAATTTGAA 59.804 34.615 26.01 26.01 44.31 2.69
2705 3202 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2706 3203 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
2707 3204 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2708 3205 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2709 3206 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2710 3207 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2711 3208 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2712 3209 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2713 3210 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2714 3211 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2715 3212 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2716 3213 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2717 3214 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2718 3215 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2719 3216 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2720 3217 2.091588 CCACGACGAGTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2721 3218 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2722 3219 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2723 3220 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2724 3221 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2725 3222 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2726 3223 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2727 3224 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2728 3225 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2738 3235 2.467880 ACGGAGGGAGTACATCAACAT 58.532 47.619 0.00 0.00 0.00 2.71
2790 3287 6.640907 GCTTGTAATTTTGTGTTAGAACTGGG 59.359 38.462 0.00 0.00 0.00 4.45
2884 3386 5.837438 ACTTACCGCACTATAAACTCCCTAT 59.163 40.000 0.00 0.00 0.00 2.57
3019 3521 3.589735 TGCTTTCATTCCCCTTACACCTA 59.410 43.478 0.00 0.00 0.00 3.08
3031 3538 5.897824 CCCCTTACACCTAGTTCAGAGATAA 59.102 44.000 0.00 0.00 0.00 1.75
3057 3564 1.610522 GTGACAGCTGAGGCACATTTT 59.389 47.619 23.35 0.00 41.70 1.82
3067 3574 6.884295 AGCTGAGGCACATTTTACTAACATTA 59.116 34.615 0.00 0.00 41.70 1.90
3074 3581 9.946165 GGCACATTTTACTAACATTATACTTCC 57.054 33.333 0.00 0.00 0.00 3.46
3381 3891 8.757164 AAATTCGGTTCATTTGGTAAATTCTC 57.243 30.769 0.00 0.00 0.00 2.87
3382 3892 5.539582 TCGGTTCATTTGGTAAATTCTCG 57.460 39.130 0.00 0.00 0.00 4.04
3414 3924 2.665052 GGTTAACCGAACTAGCTGAACG 59.335 50.000 9.34 0.00 38.21 3.95
3422 3932 4.863131 CCGAACTAGCTGAACGTAAGAATT 59.137 41.667 0.00 0.00 43.62 2.17
3425 3935 7.859377 CCGAACTAGCTGAACGTAAGAATTATA 59.141 37.037 0.00 0.00 43.62 0.98
3473 6833 3.055094 ACCAACAGAGCAAGTATGGGTAG 60.055 47.826 0.00 0.00 32.21 3.18
3590 7277 4.090930 GTCGCACGTAATTTGTATGACTGT 59.909 41.667 0.00 0.00 0.00 3.55
3591 7278 4.325204 TCGCACGTAATTTGTATGACTGTC 59.675 41.667 0.00 0.00 0.00 3.51
3592 7279 4.090786 CGCACGTAATTTGTATGACTGTCA 59.909 41.667 13.60 13.60 0.00 3.58
3601 7288 2.095919 TGTATGACTGTCAGACGTCACG 60.096 50.000 25.13 8.57 41.18 4.35
3614 7301 1.134753 ACGTCACGTCAGGTTGTTACA 59.865 47.619 0.00 0.00 33.69 2.41
3616 7303 2.217847 CGTCACGTCAGGTTGTTACAAG 59.782 50.000 0.00 0.00 0.00 3.16
3617 7304 2.033151 GTCACGTCAGGTTGTTACAAGC 60.033 50.000 18.20 18.20 0.00 4.01
3638 7325 1.754803 TCTTCTATTCATGGCGGTCGT 59.245 47.619 0.00 0.00 0.00 4.34
3650 7337 1.009389 GCGGTCGTCTGGTTCTCTTG 61.009 60.000 0.00 0.00 0.00 3.02
3660 7348 4.513318 GTCTGGTTCTCTTGAAGGAAAGTG 59.487 45.833 0.00 0.00 32.15 3.16
3663 7351 2.554462 GTTCTCTTGAAGGAAAGTGGGC 59.446 50.000 0.00 0.00 32.15 5.36
3685 7373 2.816974 CGAAGTGTTTTTCGCAATGC 57.183 45.000 0.00 0.00 42.74 3.56
3688 7376 1.851658 AGTGTTTTTCGCAATGCACC 58.148 45.000 5.91 0.00 0.00 5.01
3689 7377 1.408702 AGTGTTTTTCGCAATGCACCT 59.591 42.857 5.91 0.00 0.00 4.00
3690 7378 2.621055 AGTGTTTTTCGCAATGCACCTA 59.379 40.909 5.91 0.00 0.00 3.08
3693 7381 3.815962 TGTTTTTCGCAATGCACCTACTA 59.184 39.130 5.91 0.00 0.00 1.82
3694 7382 4.276183 TGTTTTTCGCAATGCACCTACTAA 59.724 37.500 5.91 0.00 0.00 2.24
3695 7383 4.413495 TTTTCGCAATGCACCTACTAAC 57.587 40.909 5.91 0.00 0.00 2.34
3696 7384 2.753055 TCGCAATGCACCTACTAACA 57.247 45.000 5.91 0.00 0.00 2.41
3717 7429 9.365311 CTAACAGTGAAAACTACACGTAATTTG 57.635 33.333 0.00 0.00 42.25 2.32
3718 7430 7.311364 ACAGTGAAAACTACACGTAATTTGT 57.689 32.000 0.00 0.00 42.25 2.83
3719 7431 7.184106 ACAGTGAAAACTACACGTAATTTGTG 58.816 34.615 0.00 8.49 42.25 3.33
3720 7432 6.631238 CAGTGAAAACTACACGTAATTTGTGG 59.369 38.462 13.19 3.62 41.64 4.17
3721 7433 6.316890 AGTGAAAACTACACGTAATTTGTGGT 59.683 34.615 13.19 4.18 40.09 4.16
3722 7434 6.412653 GTGAAAACTACACGTAATTTGTGGTG 59.587 38.462 13.19 6.07 38.54 4.17
3723 7435 4.477302 AACTACACGTAATTTGTGGTGC 57.523 40.909 13.19 0.00 38.54 5.01
3724 7436 3.735591 ACTACACGTAATTTGTGGTGCT 58.264 40.909 13.19 0.00 41.64 4.40
3725 7437 4.885413 ACTACACGTAATTTGTGGTGCTA 58.115 39.130 13.19 0.00 41.64 3.49
3726 7438 4.927425 ACTACACGTAATTTGTGGTGCTAG 59.073 41.667 13.19 8.80 41.64 3.42
3727 7439 3.997762 ACACGTAATTTGTGGTGCTAGA 58.002 40.909 13.19 0.00 41.64 2.43
3728 7440 4.575885 ACACGTAATTTGTGGTGCTAGAT 58.424 39.130 13.19 0.00 41.64 1.98
3729 7441 5.726397 ACACGTAATTTGTGGTGCTAGATA 58.274 37.500 13.19 0.00 41.64 1.98
3730 7442 5.579511 ACACGTAATTTGTGGTGCTAGATAC 59.420 40.000 13.19 0.00 41.64 2.24
3731 7443 5.579119 CACGTAATTTGTGGTGCTAGATACA 59.421 40.000 0.00 0.00 33.69 2.29
3732 7444 6.257849 CACGTAATTTGTGGTGCTAGATACAT 59.742 38.462 0.00 0.00 33.69 2.29
3733 7445 6.479001 ACGTAATTTGTGGTGCTAGATACATC 59.521 38.462 0.00 0.00 0.00 3.06
3734 7446 6.073765 CGTAATTTGTGGTGCTAGATACATCC 60.074 42.308 0.00 0.00 0.00 3.51
3735 7447 4.835284 TTTGTGGTGCTAGATACATCCA 57.165 40.909 0.00 0.00 0.00 3.41
3736 7448 5.372343 TTTGTGGTGCTAGATACATCCAT 57.628 39.130 0.00 0.00 0.00 3.41
3737 7449 5.372343 TTGTGGTGCTAGATACATCCATT 57.628 39.130 0.00 0.00 0.00 3.16
3738 7450 5.372343 TGTGGTGCTAGATACATCCATTT 57.628 39.130 0.00 0.00 0.00 2.32
3739 7451 5.125356 TGTGGTGCTAGATACATCCATTTG 58.875 41.667 0.00 0.00 0.00 2.32
3740 7452 5.104569 TGTGGTGCTAGATACATCCATTTGA 60.105 40.000 0.00 0.00 0.00 2.69
3741 7453 5.468072 GTGGTGCTAGATACATCCATTTGAG 59.532 44.000 0.00 0.00 0.00 3.02
3742 7454 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
3743 7455 5.221722 GGTGCTAGATACATCCATTTGAGGA 60.222 44.000 0.00 0.00 43.01 3.71
3745 7457 6.593382 GTGCTAGATACATCCATTTGAGGATC 59.407 42.308 0.00 0.00 45.16 3.36
3746 7458 6.270695 TGCTAGATACATCCATTTGAGGATCA 59.729 38.462 0.00 0.00 45.16 2.92
3758 7470 3.417069 TGAGGATCAAGCTTTTTCGGA 57.583 42.857 0.00 0.00 45.97 4.55
3759 7471 3.074412 TGAGGATCAAGCTTTTTCGGAC 58.926 45.455 0.00 0.00 45.97 4.79
3760 7472 2.076863 AGGATCAAGCTTTTTCGGACG 58.923 47.619 0.00 0.00 0.00 4.79
3761 7473 1.130561 GGATCAAGCTTTTTCGGACGG 59.869 52.381 0.00 0.00 0.00 4.79
3762 7474 2.073816 GATCAAGCTTTTTCGGACGGA 58.926 47.619 0.00 0.00 0.00 4.69
3763 7475 1.508632 TCAAGCTTTTTCGGACGGAG 58.491 50.000 0.00 0.00 0.00 4.63
3764 7476 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
3765 7477 0.395312 AAGCTTTTTCGGACGGAGGA 59.605 50.000 0.00 0.00 0.00 3.71
3766 7478 0.395312 AGCTTTTTCGGACGGAGGAA 59.605 50.000 0.00 0.00 0.00 3.36
3767 7479 0.796927 GCTTTTTCGGACGGAGGAAG 59.203 55.000 0.00 0.00 0.00 3.46
3780 7492 2.417379 CGGAGGAAGTATGACAGTGTGG 60.417 54.545 0.00 0.00 0.00 4.17
3825 7537 4.043435 GGACATGGGGCCTAGATTTTATCT 59.957 45.833 0.84 0.00 43.33 1.98
3849 7561 4.809496 AGGCCCCTGCAATGCGAG 62.809 66.667 0.00 0.00 40.13 5.03
3870 7582 6.106673 CGAGTAACAATCCTGGTATCAAGTT 58.893 40.000 0.00 0.00 0.00 2.66
3871 7583 6.036083 CGAGTAACAATCCTGGTATCAAGTTG 59.964 42.308 0.00 0.00 0.00 3.16
3872 7584 5.648092 AGTAACAATCCTGGTATCAAGTTGC 59.352 40.000 0.00 0.00 0.00 4.17
3899 7629 1.235281 GGTGGCCTCTTGAACGGAAC 61.235 60.000 3.32 0.00 0.00 3.62
3906 7636 1.806542 CTCTTGAACGGAACCCACATG 59.193 52.381 0.00 0.00 0.00 3.21
3937 7667 3.057736 CACAGGGAACTTTCAGATTGCAG 60.058 47.826 0.00 0.00 40.21 4.41
3941 7671 5.416952 CAGGGAACTTTCAGATTGCAGTATT 59.583 40.000 0.00 0.00 40.21 1.89
4047 7777 8.294577 ACCCTTAAGCTAATAGTTTGAAAAACG 58.705 33.333 0.00 0.00 0.00 3.60
4065 7795 4.939509 AACGATTTTCTATTGTGGGACG 57.060 40.909 0.00 0.00 0.00 4.79
4070 7800 1.200519 TTCTATTGTGGGACGGAGGG 58.799 55.000 0.00 0.00 0.00 4.30
4084 7814 3.825014 GACGGAGGGAGTACATGCTAATA 59.175 47.826 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 2.109126 GCACCACCGGAAGCATCTC 61.109 63.158 9.46 0.00 0.00 2.75
117 118 2.325583 TCTCAACAAGCGGTGAACTT 57.674 45.000 0.00 0.00 0.00 2.66
293 298 4.082081 TCAATCAAAAGTGCATCACCATCC 60.082 41.667 0.00 0.00 34.49 3.51
345 351 7.997107 TGCATTGAAATAGCATCAGAAATTC 57.003 32.000 0.00 0.00 32.55 2.17
351 357 5.005012 CGGTTTTGCATTGAAATAGCATCAG 59.995 40.000 0.00 0.00 38.19 2.90
470 505 2.468532 AAAAACGCTCAACTCCAACG 57.531 45.000 0.00 0.00 0.00 4.10
490 525 4.405116 AAAAGTGCATTTTGGAGCTTCA 57.595 36.364 8.06 0.00 39.67 3.02
572 607 4.098914 TCAAACACACCCTTAGAGCATT 57.901 40.909 0.00 0.00 0.00 3.56
584 619 6.601264 CATTTTGGCCATAATTCAAACACAC 58.399 36.000 17.69 0.00 31.21 3.82
585 620 5.180868 GCATTTTGGCCATAATTCAAACACA 59.819 36.000 17.69 0.00 31.21 3.72
586 621 5.180868 TGCATTTTGGCCATAATTCAAACAC 59.819 36.000 17.69 5.76 31.21 3.32
587 622 5.180868 GTGCATTTTGGCCATAATTCAAACA 59.819 36.000 19.39 10.52 31.21 2.83
588 623 5.391843 GGTGCATTTTGGCCATAATTCAAAC 60.392 40.000 19.39 13.18 31.21 2.93
589 624 4.699257 GGTGCATTTTGGCCATAATTCAAA 59.301 37.500 19.39 10.99 0.00 2.69
590 625 4.260170 GGTGCATTTTGGCCATAATTCAA 58.740 39.130 19.39 2.11 0.00 2.69
591 626 3.370315 GGGTGCATTTTGGCCATAATTCA 60.370 43.478 17.69 16.36 0.00 2.57
592 627 3.118298 AGGGTGCATTTTGGCCATAATTC 60.118 43.478 17.69 14.04 0.00 2.17
593 628 2.845586 AGGGTGCATTTTGGCCATAATT 59.154 40.909 17.69 1.12 0.00 1.40
594 629 2.480390 AGGGTGCATTTTGGCCATAAT 58.520 42.857 14.94 14.94 0.00 1.28
595 630 1.949799 AGGGTGCATTTTGGCCATAA 58.050 45.000 6.09 9.16 0.00 1.90
596 631 2.836636 TAGGGTGCATTTTGGCCATA 57.163 45.000 6.09 0.00 0.00 2.74
597 632 2.041701 GATAGGGTGCATTTTGGCCAT 58.958 47.619 6.09 0.00 0.00 4.40
598 633 1.272928 TGATAGGGTGCATTTTGGCCA 60.273 47.619 0.00 0.00 0.00 5.36
599 634 1.484038 TGATAGGGTGCATTTTGGCC 58.516 50.000 0.00 0.00 0.00 5.36
600 635 3.608316 TTTGATAGGGTGCATTTTGGC 57.392 42.857 0.00 0.00 0.00 4.52
601 636 7.306953 CAAAATTTTGATAGGGTGCATTTTGG 58.693 34.615 23.72 0.00 40.55 3.28
602 637 7.040548 ACCAAAATTTTGATAGGGTGCATTTTG 60.041 33.333 28.44 10.74 40.55 2.44
603 638 7.003482 ACCAAAATTTTGATAGGGTGCATTTT 58.997 30.769 28.44 0.00 40.55 1.82
604 639 6.541907 ACCAAAATTTTGATAGGGTGCATTT 58.458 32.000 28.44 0.00 40.55 2.32
605 640 6.125589 ACCAAAATTTTGATAGGGTGCATT 57.874 33.333 28.44 0.00 40.55 3.56
606 641 5.248020 TGACCAAAATTTTGATAGGGTGCAT 59.752 36.000 28.44 0.00 40.55 3.96
607 642 4.590647 TGACCAAAATTTTGATAGGGTGCA 59.409 37.500 28.44 15.17 40.55 4.57
608 643 5.146010 TGACCAAAATTTTGATAGGGTGC 57.854 39.130 28.44 13.30 40.55 5.01
609 644 6.108015 CCATGACCAAAATTTTGATAGGGTG 58.892 40.000 28.44 18.13 40.55 4.61
610 645 5.784906 ACCATGACCAAAATTTTGATAGGGT 59.215 36.000 28.44 24.37 40.55 4.34
611 646 6.298441 ACCATGACCAAAATTTTGATAGGG 57.702 37.500 28.44 23.86 40.55 3.53
612 647 6.070881 TGGACCATGACCAAAATTTTGATAGG 60.071 38.462 28.44 22.26 40.55 2.57
613 648 6.934056 TGGACCATGACCAAAATTTTGATAG 58.066 36.000 28.44 16.09 40.55 2.08
614 649 6.924913 TGGACCATGACCAAAATTTTGATA 57.075 33.333 28.44 15.75 40.55 2.15
615 650 5.822132 TGGACCATGACCAAAATTTTGAT 57.178 34.783 28.44 15.21 40.55 2.57
616 651 5.620738 TTGGACCATGACCAAAATTTTGA 57.379 34.783 28.44 12.13 43.22 2.69
639 674 4.590222 AGCAATCCAAACAAAGACCAATCT 59.410 37.500 0.00 0.00 36.42 2.40
640 675 4.687483 CAGCAATCCAAACAAAGACCAATC 59.313 41.667 0.00 0.00 0.00 2.67
641 676 4.634199 CAGCAATCCAAACAAAGACCAAT 58.366 39.130 0.00 0.00 0.00 3.16
642 677 3.740764 GCAGCAATCCAAACAAAGACCAA 60.741 43.478 0.00 0.00 0.00 3.67
643 678 2.224018 GCAGCAATCCAAACAAAGACCA 60.224 45.455 0.00 0.00 0.00 4.02
644 679 2.407090 GCAGCAATCCAAACAAAGACC 58.593 47.619 0.00 0.00 0.00 3.85
645 680 2.036346 AGGCAGCAATCCAAACAAAGAC 59.964 45.455 0.00 0.00 0.00 3.01
646 681 2.318908 AGGCAGCAATCCAAACAAAGA 58.681 42.857 0.00 0.00 0.00 2.52
647 682 2.825861 AGGCAGCAATCCAAACAAAG 57.174 45.000 0.00 0.00 0.00 2.77
648 683 3.557228 AAAGGCAGCAATCCAAACAAA 57.443 38.095 0.00 0.00 0.00 2.83
649 684 3.557228 AAAAGGCAGCAATCCAAACAA 57.443 38.095 0.00 0.00 0.00 2.83
650 685 3.557228 AAAAAGGCAGCAATCCAAACA 57.443 38.095 0.00 0.00 0.00 2.83
667 702 7.417612 GCTAGAGTTCATTGACTTGTCAAAAA 58.582 34.615 18.31 13.19 32.94 1.94
668 703 6.017109 GGCTAGAGTTCATTGACTTGTCAAAA 60.017 38.462 18.31 8.09 32.94 2.44
669 704 5.470098 GGCTAGAGTTCATTGACTTGTCAAA 59.530 40.000 18.31 2.51 32.94 2.69
670 705 4.997395 GGCTAGAGTTCATTGACTTGTCAA 59.003 41.667 17.00 17.00 0.00 3.18
671 706 4.040339 TGGCTAGAGTTCATTGACTTGTCA 59.960 41.667 0.00 0.00 0.00 3.58
672 707 4.569943 TGGCTAGAGTTCATTGACTTGTC 58.430 43.478 0.00 0.00 0.00 3.18
673 708 4.623932 TGGCTAGAGTTCATTGACTTGT 57.376 40.909 0.00 0.00 0.00 3.16
674 709 4.999950 AGTTGGCTAGAGTTCATTGACTTG 59.000 41.667 0.00 0.00 0.00 3.16
675 710 5.234466 AGTTGGCTAGAGTTCATTGACTT 57.766 39.130 0.00 0.00 0.00 3.01
676 711 4.899352 AGTTGGCTAGAGTTCATTGACT 57.101 40.909 0.00 0.00 0.00 3.41
677 712 4.997395 TGAAGTTGGCTAGAGTTCATTGAC 59.003 41.667 0.00 0.00 32.93 3.18
678 713 5.221722 ACTGAAGTTGGCTAGAGTTCATTGA 60.222 40.000 0.00 0.00 36.26 2.57
679 714 4.999950 ACTGAAGTTGGCTAGAGTTCATTG 59.000 41.667 0.00 0.00 36.26 2.82
680 715 5.234466 ACTGAAGTTGGCTAGAGTTCATT 57.766 39.130 0.00 0.00 36.26 2.57
681 716 4.899352 ACTGAAGTTGGCTAGAGTTCAT 57.101 40.909 0.00 0.00 36.26 2.57
682 717 4.689612 AACTGAAGTTGGCTAGAGTTCA 57.310 40.909 0.00 0.00 36.80 3.18
683 718 7.674471 AATAAACTGAAGTTGGCTAGAGTTC 57.326 36.000 0.00 0.00 38.44 3.01
684 719 9.740710 ATAAATAAACTGAAGTTGGCTAGAGTT 57.259 29.630 0.00 0.00 38.44 3.01
685 720 9.740710 AATAAATAAACTGAAGTTGGCTAGAGT 57.259 29.630 0.00 0.00 38.44 3.24
712 747 9.217278 CCATGATTTGATCAACATTGGTAAAAA 57.783 29.630 7.89 0.00 43.50 1.94
713 748 7.823310 CCCATGATTTGATCAACATTGGTAAAA 59.177 33.333 7.89 0.00 43.50 1.52
714 749 7.329499 CCCATGATTTGATCAACATTGGTAAA 58.671 34.615 7.89 0.00 43.50 2.01
715 750 6.629963 GCCCATGATTTGATCAACATTGGTAA 60.630 38.462 21.00 3.65 43.50 2.85
716 751 5.163426 GCCCATGATTTGATCAACATTGGTA 60.163 40.000 21.00 4.25 43.50 3.25
717 752 4.383335 GCCCATGATTTGATCAACATTGGT 60.383 41.667 21.00 3.05 43.50 3.67
718 753 4.124238 GCCCATGATTTGATCAACATTGG 58.876 43.478 18.08 18.08 43.50 3.16
719 754 4.760878 TGCCCATGATTTGATCAACATTG 58.239 39.130 7.89 5.51 43.50 2.82
720 755 5.180271 GTTGCCCATGATTTGATCAACATT 58.820 37.500 7.89 0.00 43.50 2.71
721 756 4.383335 GGTTGCCCATGATTTGATCAACAT 60.383 41.667 7.89 6.68 43.50 2.71
722 757 3.055963 GGTTGCCCATGATTTGATCAACA 60.056 43.478 7.89 4.30 43.50 3.33
723 758 3.055963 TGGTTGCCCATGATTTGATCAAC 60.056 43.478 7.89 0.00 43.50 3.18
724 759 3.171528 TGGTTGCCCATGATTTGATCAA 58.828 40.909 3.38 3.38 43.50 2.57
725 760 2.817665 TGGTTGCCCATGATTTGATCA 58.182 42.857 0.00 0.00 44.55 2.92
726 761 3.891422 TTGGTTGCCCATGATTTGATC 57.109 42.857 0.00 0.00 41.49 2.92
727 762 4.637387 TTTTGGTTGCCCATGATTTGAT 57.363 36.364 0.00 0.00 41.49 2.57
728 763 4.637387 ATTTTGGTTGCCCATGATTTGA 57.363 36.364 0.00 0.00 41.49 2.69
729 764 5.708877 AAATTTTGGTTGCCCATGATTTG 57.291 34.783 0.00 0.00 41.49 2.32
730 765 6.086785 CAAAATTTTGGTTGCCCATGATTT 57.913 33.333 21.00 0.00 41.49 2.17
731 766 5.708877 CAAAATTTTGGTTGCCCATGATT 57.291 34.783 21.00 0.00 41.49 2.57
758 793 2.556287 CCTCGTCAAAGCGTTGGC 59.444 61.111 12.54 9.83 35.92 4.52
759 794 1.781025 TTGCCTCGTCAAAGCGTTGG 61.781 55.000 12.54 0.00 35.29 3.77
760 795 0.657368 GTTGCCTCGTCAAAGCGTTG 60.657 55.000 5.98 5.98 35.95 4.10
761 796 1.647084 GTTGCCTCGTCAAAGCGTT 59.353 52.632 0.00 0.00 0.00 4.84
762 797 2.594962 CGTTGCCTCGTCAAAGCGT 61.595 57.895 0.00 0.00 0.00 5.07
763 798 2.101209 AACGTTGCCTCGTCAAAGCG 62.101 55.000 0.00 0.00 43.38 4.68
764 799 0.657368 CAACGTTGCCTCGTCAAAGC 60.657 55.000 16.51 0.00 43.38 3.51
765 800 0.041312 CCAACGTTGCCTCGTCAAAG 60.041 55.000 22.93 1.10 43.38 2.77
766 801 1.440938 CCCAACGTTGCCTCGTCAAA 61.441 55.000 22.93 0.00 43.38 2.69
767 802 1.890041 CCCAACGTTGCCTCGTCAA 60.890 57.895 22.93 0.00 43.38 3.18
768 803 2.280524 CCCAACGTTGCCTCGTCA 60.281 61.111 22.93 0.00 43.38 4.35
769 804 3.723348 GCCCAACGTTGCCTCGTC 61.723 66.667 22.93 3.70 43.38 4.20
770 805 2.457743 TATGCCCAACGTTGCCTCGT 62.458 55.000 22.93 15.52 46.19 4.18
771 806 1.302383 TTATGCCCAACGTTGCCTCG 61.302 55.000 22.93 8.95 0.00 4.63
772 807 0.885196 TTTATGCCCAACGTTGCCTC 59.115 50.000 22.93 13.20 0.00 4.70
773 808 0.601057 GTTTATGCCCAACGTTGCCT 59.399 50.000 22.93 8.11 0.00 4.75
774 809 0.601057 AGTTTATGCCCAACGTTGCC 59.399 50.000 22.93 15.32 0.00 4.52
775 810 3.562567 TTAGTTTATGCCCAACGTTGC 57.437 42.857 22.93 13.12 0.00 4.17
776 811 4.677832 GTGTTTAGTTTATGCCCAACGTTG 59.322 41.667 21.47 21.47 0.00 4.10
777 812 4.338682 TGTGTTTAGTTTATGCCCAACGTT 59.661 37.500 0.00 0.00 0.00 3.99
778 813 3.884091 TGTGTTTAGTTTATGCCCAACGT 59.116 39.130 0.00 0.00 0.00 3.99
779 814 4.223659 GTGTGTTTAGTTTATGCCCAACG 58.776 43.478 0.00 0.00 0.00 4.10
780 815 4.552355 GGTGTGTTTAGTTTATGCCCAAC 58.448 43.478 0.00 0.00 0.00 3.77
781 816 3.574826 GGGTGTGTTTAGTTTATGCCCAA 59.425 43.478 0.00 0.00 34.03 4.12
782 817 3.158676 GGGTGTGTTTAGTTTATGCCCA 58.841 45.455 0.00 0.00 34.03 5.36
783 818 3.427573 AGGGTGTGTTTAGTTTATGCCC 58.572 45.455 0.00 0.00 0.00 5.36
784 819 5.941647 TCTTAGGGTGTGTTTAGTTTATGCC 59.058 40.000 0.00 0.00 0.00 4.40
785 820 6.653740 AGTCTTAGGGTGTGTTTAGTTTATGC 59.346 38.462 0.00 0.00 0.00 3.14
786 821 8.617290 AAGTCTTAGGGTGTGTTTAGTTTATG 57.383 34.615 0.00 0.00 0.00 1.90
789 824 9.636789 ATTTAAGTCTTAGGGTGTGTTTAGTTT 57.363 29.630 0.00 0.00 0.00 2.66
790 825 9.281371 GATTTAAGTCTTAGGGTGTGTTTAGTT 57.719 33.333 0.00 0.00 0.00 2.24
791 826 7.881751 GGATTTAAGTCTTAGGGTGTGTTTAGT 59.118 37.037 0.00 0.00 0.00 2.24
792 827 8.101419 AGGATTTAAGTCTTAGGGTGTGTTTAG 58.899 37.037 0.00 0.00 0.00 1.85
793 828 7.881232 CAGGATTTAAGTCTTAGGGTGTGTTTA 59.119 37.037 0.00 0.00 0.00 2.01
794 829 6.715264 CAGGATTTAAGTCTTAGGGTGTGTTT 59.285 38.462 0.00 0.00 0.00 2.83
795 830 6.043938 TCAGGATTTAAGTCTTAGGGTGTGTT 59.956 38.462 0.00 0.00 0.00 3.32
796 831 5.546499 TCAGGATTTAAGTCTTAGGGTGTGT 59.454 40.000 0.00 0.00 0.00 3.72
797 832 5.875359 GTCAGGATTTAAGTCTTAGGGTGTG 59.125 44.000 0.00 0.00 0.00 3.82
798 833 5.045797 GGTCAGGATTTAAGTCTTAGGGTGT 60.046 44.000 0.00 0.00 0.00 4.16
799 834 5.045869 TGGTCAGGATTTAAGTCTTAGGGTG 60.046 44.000 0.00 0.00 0.00 4.61
800 835 5.045797 GTGGTCAGGATTTAAGTCTTAGGGT 60.046 44.000 0.00 0.00 0.00 4.34
801 836 5.429130 GTGGTCAGGATTTAAGTCTTAGGG 58.571 45.833 0.00 0.00 0.00 3.53
802 837 5.105473 TCGTGGTCAGGATTTAAGTCTTAGG 60.105 44.000 0.00 0.00 0.00 2.69
803 838 5.962433 TCGTGGTCAGGATTTAAGTCTTAG 58.038 41.667 0.00 0.00 0.00 2.18
804 839 5.988310 TCGTGGTCAGGATTTAAGTCTTA 57.012 39.130 0.00 0.00 0.00 2.10
805 840 4.884668 TCGTGGTCAGGATTTAAGTCTT 57.115 40.909 0.00 0.00 0.00 3.01
806 841 6.323996 TGATATCGTGGTCAGGATTTAAGTCT 59.676 38.462 10.76 0.00 37.20 3.24
807 842 6.421202 GTGATATCGTGGTCAGGATTTAAGTC 59.579 42.308 10.76 0.00 37.20 3.01
808 843 6.098409 AGTGATATCGTGGTCAGGATTTAAGT 59.902 38.462 10.76 0.00 37.20 2.24
809 844 6.516718 AGTGATATCGTGGTCAGGATTTAAG 58.483 40.000 10.76 0.00 37.20 1.85
810 845 6.323996 AGAGTGATATCGTGGTCAGGATTTAA 59.676 38.462 10.76 0.00 37.20 1.52
811 846 5.833667 AGAGTGATATCGTGGTCAGGATTTA 59.166 40.000 10.76 0.00 37.20 1.40
812 847 4.651503 AGAGTGATATCGTGGTCAGGATTT 59.348 41.667 10.76 4.33 37.20 2.17
813 848 4.219115 AGAGTGATATCGTGGTCAGGATT 58.781 43.478 10.76 1.30 37.20 3.01
814 849 3.823873 GAGAGTGATATCGTGGTCAGGAT 59.176 47.826 10.40 10.40 39.09 3.24
815 850 3.215151 GAGAGTGATATCGTGGTCAGGA 58.785 50.000 0.00 0.00 0.00 3.86
816 851 2.294791 GGAGAGTGATATCGTGGTCAGG 59.705 54.545 0.00 0.00 0.00 3.86
817 852 3.218453 AGGAGAGTGATATCGTGGTCAG 58.782 50.000 0.00 0.00 0.00 3.51
818 853 3.215151 GAGGAGAGTGATATCGTGGTCA 58.785 50.000 0.00 0.00 0.00 4.02
819 854 2.554893 GGAGGAGAGTGATATCGTGGTC 59.445 54.545 0.00 0.00 0.00 4.02
820 855 2.175931 AGGAGGAGAGTGATATCGTGGT 59.824 50.000 0.00 0.00 0.00 4.16
821 856 2.817258 GAGGAGGAGAGTGATATCGTGG 59.183 54.545 0.00 0.00 0.00 4.94
822 857 2.482336 CGAGGAGGAGAGTGATATCGTG 59.518 54.545 0.00 0.00 0.00 4.35
823 858 2.551287 CCGAGGAGGAGAGTGATATCGT 60.551 54.545 0.00 0.00 45.00 3.73
824 859 2.080693 CCGAGGAGGAGAGTGATATCG 58.919 57.143 0.00 0.00 45.00 2.92
825 860 1.816224 GCCGAGGAGGAGAGTGATATC 59.184 57.143 0.00 0.00 45.00 1.63
826 861 1.145945 TGCCGAGGAGGAGAGTGATAT 59.854 52.381 0.00 0.00 45.00 1.63
827 862 0.551396 TGCCGAGGAGGAGAGTGATA 59.449 55.000 0.00 0.00 45.00 2.15
828 863 1.040339 GTGCCGAGGAGGAGAGTGAT 61.040 60.000 0.00 0.00 45.00 3.06
829 864 1.679305 GTGCCGAGGAGGAGAGTGA 60.679 63.158 0.00 0.00 45.00 3.41
830 865 1.680651 AGTGCCGAGGAGGAGAGTG 60.681 63.158 0.00 0.00 45.00 3.51
831 866 1.680651 CAGTGCCGAGGAGGAGAGT 60.681 63.158 0.00 0.00 45.00 3.24
832 867 1.254284 AACAGTGCCGAGGAGGAGAG 61.254 60.000 0.00 0.00 45.00 3.20
833 868 0.832135 AAACAGTGCCGAGGAGGAGA 60.832 55.000 0.00 0.00 45.00 3.71
834 869 0.390472 GAAACAGTGCCGAGGAGGAG 60.390 60.000 0.00 0.00 45.00 3.69
835 870 0.832135 AGAAACAGTGCCGAGGAGGA 60.832 55.000 0.00 0.00 45.00 3.71
836 871 0.390472 GAGAAACAGTGCCGAGGAGG 60.390 60.000 0.00 0.00 44.97 4.30
837 872 0.318441 TGAGAAACAGTGCCGAGGAG 59.682 55.000 0.00 0.00 0.00 3.69
838 873 0.756294 TTGAGAAACAGTGCCGAGGA 59.244 50.000 0.00 0.00 0.00 3.71
839 874 0.868406 GTTGAGAAACAGTGCCGAGG 59.132 55.000 0.00 0.00 0.00 4.63
840 875 1.581934 TGTTGAGAAACAGTGCCGAG 58.418 50.000 0.00 0.00 0.00 4.63
841 876 1.939934 CTTGTTGAGAAACAGTGCCGA 59.060 47.619 0.00 0.00 33.73 5.54
842 877 1.670811 ACTTGTTGAGAAACAGTGCCG 59.329 47.619 0.00 0.00 33.73 5.69
848 883 6.316319 GGTCGTTTTTACTTGTTGAGAAACA 58.684 36.000 0.00 0.00 0.00 2.83
859 894 1.071228 AGCCTCCGGTCGTTTTTACTT 59.929 47.619 0.00 0.00 0.00 2.24
872 907 1.841450 GTTGAGACGATAAGCCTCCG 58.159 55.000 0.00 0.00 0.00 4.63
886 921 1.517257 CTAGCGAGGGCACGTTGAG 60.517 63.158 5.38 0.00 43.41 3.02
896 931 0.249657 GTGGATGGAAGCTAGCGAGG 60.250 60.000 9.55 0.00 0.00 4.63
1009 1044 3.258622 GGAGAACGGAGGAAAGAAGAAGA 59.741 47.826 0.00 0.00 0.00 2.87
1267 1311 3.126000 GCTTATATTTGATCCTCTGCGGC 59.874 47.826 0.00 0.00 0.00 6.53
1269 1313 4.573900 AGGCTTATATTTGATCCTCTGCG 58.426 43.478 0.00 0.00 0.00 5.18
1270 1314 4.940654 GGAGGCTTATATTTGATCCTCTGC 59.059 45.833 6.12 0.00 39.85 4.26
1271 1315 6.371595 AGGAGGCTTATATTTGATCCTCTG 57.628 41.667 6.12 0.00 39.85 3.35
1272 1316 6.012945 GGAAGGAGGCTTATATTTGATCCTCT 60.013 42.308 6.12 0.00 39.85 3.69
1273 1317 6.176896 GGAAGGAGGCTTATATTTGATCCTC 58.823 44.000 0.00 0.00 39.38 3.71
1274 1318 5.612688 TGGAAGGAGGCTTATATTTGATCCT 59.387 40.000 0.00 0.00 37.29 3.24
1275 1319 5.707764 GTGGAAGGAGGCTTATATTTGATCC 59.292 44.000 0.00 0.00 0.00 3.36
1276 1320 5.409826 CGTGGAAGGAGGCTTATATTTGATC 59.590 44.000 0.00 0.00 0.00 2.92
1277 1321 5.308825 CGTGGAAGGAGGCTTATATTTGAT 58.691 41.667 0.00 0.00 0.00 2.57
1350 1418 1.522580 GAACATGAGGCGAGGGAGC 60.523 63.158 0.00 0.00 0.00 4.70
1362 1430 1.673760 CAACGCAACGGAAGAACATG 58.326 50.000 0.00 0.00 0.00 3.21
1365 1433 0.657368 CTGCAACGCAACGGAAGAAC 60.657 55.000 0.00 0.00 38.41 3.01
1381 1453 2.124403 CCAGCCACATCTCCCTGC 60.124 66.667 0.00 0.00 0.00 4.85
1493 1569 4.276926 GCTGGTGATCTTGTTTCTTTGACT 59.723 41.667 0.00 0.00 0.00 3.41
1568 1646 1.065102 TCGAGGTAATACAGCGACAGC 59.935 52.381 3.39 0.00 45.58 4.40
1695 1775 2.034305 GCGTCCTCGAACCTGTATATGT 59.966 50.000 0.00 0.00 39.71 2.29
1696 1776 2.607282 GGCGTCCTCGAACCTGTATATG 60.607 54.545 0.00 0.00 39.71 1.78
1697 1777 1.612463 GGCGTCCTCGAACCTGTATAT 59.388 52.381 0.00 0.00 39.71 0.86
1698 1778 1.027357 GGCGTCCTCGAACCTGTATA 58.973 55.000 0.00 0.00 39.71 1.47
1699 1779 1.814527 GGCGTCCTCGAACCTGTAT 59.185 57.895 0.00 0.00 39.71 2.29
1700 1780 2.693762 CGGCGTCCTCGAACCTGTA 61.694 63.158 0.00 0.00 39.71 2.74
1765 1845 4.282496 AGAGGAAACACCATATCGACTCT 58.718 43.478 0.00 0.00 42.04 3.24
1788 1868 1.474677 CCCCATACAGCTGAGCTTCAG 60.475 57.143 23.35 0.00 46.90 3.02
1815 1895 1.603739 AAGAAGCGGTTCCTTGCCC 60.604 57.895 22.91 0.00 32.48 5.36
1816 1896 1.581447 CAAGAAGCGGTTCCTTGCC 59.419 57.895 22.91 0.00 32.48 4.52
1825 1905 0.453390 GAATTGCCTCCAAGAAGCGG 59.547 55.000 0.00 0.00 33.80 5.52
1880 1961 2.027745 CAGAGGGAGCATGTGTTAGTGT 60.028 50.000 0.00 0.00 0.00 3.55
1884 1965 4.901197 TTTACAGAGGGAGCATGTGTTA 57.099 40.909 0.00 0.00 0.00 2.41
1885 1966 3.788227 TTTACAGAGGGAGCATGTGTT 57.212 42.857 0.00 0.00 0.00 3.32
1887 1968 6.949352 ATTTATTTACAGAGGGAGCATGTG 57.051 37.500 0.00 0.00 0.00 3.21
1892 1973 9.157104 GCTCTTATATTTATTTACAGAGGGAGC 57.843 37.037 0.00 0.00 33.61 4.70
1906 2161 9.472361 GATCACCACTAAACGCTCTTATATTTA 57.528 33.333 0.00 0.00 0.00 1.40
1907 2162 8.204836 AGATCACCACTAAACGCTCTTATATTT 58.795 33.333 0.00 0.00 0.00 1.40
1949 2339 8.304596 CACACATAAGTACTCCTTCTGTAAAGA 58.695 37.037 0.00 0.00 38.14 2.52
1950 2340 8.088981 ACACACATAAGTACTCCTTCTGTAAAG 58.911 37.037 0.00 0.00 38.14 1.85
1956 2346 9.436957 CAAATTACACACATAAGTACTCCTTCT 57.563 33.333 0.00 0.00 34.46 2.85
1959 2349 8.999431 CAACAAATTACACACATAAGTACTCCT 58.001 33.333 0.00 0.00 0.00 3.69
1967 2357 9.900710 GGTTCATACAACAAATTACACACATAA 57.099 29.630 0.00 0.00 0.00 1.90
1977 2409 7.727331 CCACATTTGGTTCATACAACAAATT 57.273 32.000 0.00 0.00 40.43 1.82
1998 2483 5.548406 GGTTATGTCCTATGTCCATACCAC 58.452 45.833 0.00 0.00 0.00 4.16
2021 2506 5.403897 AAAAGTTGTACATGTCAGACACG 57.596 39.130 5.05 0.00 0.00 4.49
2027 2512 7.051623 AGAGTACCAAAAAGTTGTACATGTCA 58.948 34.615 0.00 0.00 32.40 3.58
2036 2521 8.219105 GTCGTTGTATAGAGTACCAAAAAGTTG 58.781 37.037 0.00 0.00 34.25 3.16
2055 2540 2.953648 CCTTTTTGTTAGGGGTCGTTGT 59.046 45.455 0.00 0.00 0.00 3.32
2066 2551 2.683768 ACATGGTGGCCCTTTTTGTTA 58.316 42.857 0.00 0.00 0.00 2.41
2138 2633 5.348997 GTCTTCGATCTAAACCAACCTGAAG 59.651 44.000 0.00 0.00 33.42 3.02
2146 2641 2.094390 CACGGGTCTTCGATCTAAACCA 60.094 50.000 10.99 0.00 0.00 3.67
2233 2728 7.519168 GCAGATCAGATCAGATATATGCATTGC 60.519 40.741 19.15 0.46 34.63 3.56
2259 2755 2.739913 TCTGCGGAAATTTACAAGGACG 59.260 45.455 0.39 0.00 0.00 4.79
2345 2842 7.462069 GCGTATAATGATGCATAGAAGAGTTCG 60.462 40.741 0.00 0.00 34.02 3.95
2402 2899 9.850628 AATATCAACACAGAGATTGTTCAATTG 57.149 29.630 0.00 0.00 38.16 2.32
2425 2922 4.211125 TGGCCTTGACAAGAACACAAATA 58.789 39.130 16.99 0.00 0.00 1.40
2440 2937 3.016736 ACAAGATCCGTAAATGGCCTTG 58.983 45.455 3.32 15.53 41.25 3.61
2441 2938 3.366052 ACAAGATCCGTAAATGGCCTT 57.634 42.857 3.32 0.00 0.00 4.35
2457 2954 8.879342 ATTAGCTCAGCTACAAGTATTACAAG 57.121 34.615 5.66 0.00 41.12 3.16
2466 2963 2.131183 GCGGATTAGCTCAGCTACAAG 58.869 52.381 5.66 0.00 41.12 3.16
2484 2981 0.721154 TGAAATAGCAGCTTGTCGCG 59.279 50.000 0.00 0.00 45.59 5.87
2503 3000 3.586100 AAGAAACAGCACACGGTTTTT 57.414 38.095 0.00 0.00 43.04 1.94
2571 3068 0.887387 TGGACTTAAGCGGGTGCAAC 60.887 55.000 1.29 0.00 46.23 4.17
2580 3077 3.691609 AGCTGCAAGTTATGGACTTAAGC 59.308 43.478 1.29 15.50 46.75 3.09
2608 3105 5.182950 TCTGCGGTGATGTGTTGATAAATTT 59.817 36.000 0.00 0.00 0.00 1.82
2609 3106 4.699735 TCTGCGGTGATGTGTTGATAAATT 59.300 37.500 0.00 0.00 0.00 1.82
2610 3107 4.260985 TCTGCGGTGATGTGTTGATAAAT 58.739 39.130 0.00 0.00 0.00 1.40
2612 3109 3.326836 TCTGCGGTGATGTGTTGATAA 57.673 42.857 0.00 0.00 0.00 1.75
2613 3110 3.326836 TTCTGCGGTGATGTGTTGATA 57.673 42.857 0.00 0.00 0.00 2.15
2636 3133 3.703052 GGAACGGAGGGAGTAGATGTTTA 59.297 47.826 0.00 0.00 0.00 2.01
2640 3137 1.776662 TGGAACGGAGGGAGTAGATG 58.223 55.000 0.00 0.00 0.00 2.90
2642 3139 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
2643 3140 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2644 3141 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2645 3142 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2646 3143 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2647 3144 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2648 3145 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2649 3146 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2650 3147 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2651 3148 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2652 3149 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2653 3150 2.471749 GCACGACGAGTAATTTGGAACG 60.472 50.000 0.00 0.00 0.00 3.95
2654 3151 2.735134 AGCACGACGAGTAATTTGGAAC 59.265 45.455 0.00 0.00 0.00 3.62
2655 3152 3.034721 AGCACGACGAGTAATTTGGAA 57.965 42.857 0.00 0.00 0.00 3.53
2656 3153 2.736144 AGCACGACGAGTAATTTGGA 57.264 45.000 0.00 0.00 0.00 3.53
2657 3154 3.806316 AAAGCACGACGAGTAATTTGG 57.194 42.857 0.00 0.00 0.00 3.28
2658 3155 5.912528 ACTAAAAGCACGACGAGTAATTTG 58.087 37.500 0.00 0.00 0.00 2.32
2659 3156 6.201425 TGAACTAAAAGCACGACGAGTAATTT 59.799 34.615 0.00 0.00 0.00 1.82
2660 3157 5.693104 TGAACTAAAAGCACGACGAGTAATT 59.307 36.000 0.00 0.00 0.00 1.40
2661 3158 5.224888 TGAACTAAAAGCACGACGAGTAAT 58.775 37.500 0.00 0.00 0.00 1.89
2662 3159 4.609947 TGAACTAAAAGCACGACGAGTAA 58.390 39.130 0.00 0.00 0.00 2.24
2663 3160 4.227512 TGAACTAAAAGCACGACGAGTA 57.772 40.909 0.00 0.00 0.00 2.59
2664 3161 3.088194 TGAACTAAAAGCACGACGAGT 57.912 42.857 0.00 0.00 0.00 4.18
2665 3162 4.446857 TTTGAACTAAAAGCACGACGAG 57.553 40.909 0.00 0.00 0.00 4.18
2666 3163 5.412526 AATTTGAACTAAAAGCACGACGA 57.587 34.783 0.00 0.00 0.00 4.20
2667 3164 5.679355 TCAAATTTGAACTAAAAGCACGACG 59.321 36.000 18.45 0.00 33.55 5.12
2668 3165 7.444558 TTCAAATTTGAACTAAAAGCACGAC 57.555 32.000 26.01 0.00 41.88 4.34
2681 3178 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
2682 3179 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
2683 3180 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
2684 3181 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2685 3182 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2686 3183 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2687 3184 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2688 3185 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2689 3186 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2690 3187 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2691 3188 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2692 3189 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2693 3190 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2694 3191 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2695 3192 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2696 3193 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2697 3194 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2698 3195 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2699 3196 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2700 3197 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2701 3198 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2702 3199 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2703 3200 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2704 3201 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2705 3202 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2706 3203 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2707 3204 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2708 3205 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2709 3206 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
2710 3207 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
2711 3208 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
2712 3209 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
2713 3210 1.829222 GATGTACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
2714 3211 1.272816 TGATGTACTCCCTCCGTTCCA 60.273 52.381 0.00 0.00 0.00 3.53
2715 3212 1.481871 TGATGTACTCCCTCCGTTCC 58.518 55.000 0.00 0.00 0.00 3.62
2716 3213 2.232941 TGTTGATGTACTCCCTCCGTTC 59.767 50.000 0.00 0.00 0.00 3.95
2717 3214 2.253610 TGTTGATGTACTCCCTCCGTT 58.746 47.619 0.00 0.00 0.00 4.44
2718 3215 1.933021 TGTTGATGTACTCCCTCCGT 58.067 50.000 0.00 0.00 0.00 4.69
2719 3216 2.168521 ACATGTTGATGTACTCCCTCCG 59.831 50.000 0.00 0.00 41.27 4.63
2720 3217 3.914426 ACATGTTGATGTACTCCCTCC 57.086 47.619 0.00 0.00 41.27 4.30
2721 3218 5.978814 AGTTACATGTTGATGTACTCCCTC 58.021 41.667 2.30 0.00 43.41 4.30
2722 3219 5.483937 TGAGTTACATGTTGATGTACTCCCT 59.516 40.000 2.30 4.07 43.41 4.20
2723 3220 5.730550 TGAGTTACATGTTGATGTACTCCC 58.269 41.667 2.30 0.00 43.41 4.30
2724 3221 7.041721 TGATGAGTTACATGTTGATGTACTCC 58.958 38.462 2.30 0.00 43.41 3.85
2725 3222 7.976175 TCTGATGAGTTACATGTTGATGTACTC 59.024 37.037 2.30 8.48 43.41 2.59
2726 3223 7.840931 TCTGATGAGTTACATGTTGATGTACT 58.159 34.615 2.30 0.00 43.41 2.73
2727 3224 8.654230 ATCTGATGAGTTACATGTTGATGTAC 57.346 34.615 2.30 0.00 43.41 2.90
2738 3235 9.230122 TGCAAGAAAATAATCTGATGAGTTACA 57.770 29.630 0.00 0.00 0.00 2.41
2854 3356 6.746120 AGTTTATAGTGCGGTAAGTCCATAG 58.254 40.000 0.00 0.00 35.57 2.23
3019 3521 7.039363 AGCTGTCACTTAGTTTATCTCTGAACT 60.039 37.037 0.00 0.00 39.32 3.01
3031 3538 1.694150 TGCCTCAGCTGTCACTTAGTT 59.306 47.619 14.67 0.00 40.80 2.24
3074 3581 5.614324 TGTAATCACCAGACCTATTCCAG 57.386 43.478 0.00 0.00 0.00 3.86
3183 3690 1.268896 GCTCCAATGCAATCCATGACG 60.269 52.381 0.00 0.00 33.49 4.35
3347 3857 9.150348 ACCAAATGAACCGAATTTAAAATGATC 57.850 29.630 0.00 0.00 0.00 2.92
3349 3859 9.982651 TTACCAAATGAACCGAATTTAAAATGA 57.017 25.926 0.00 0.00 0.00 2.57
3381 3891 3.011119 TCGGTTAACCATTGATTTCCCG 58.989 45.455 24.14 5.96 35.14 5.14
3382 3892 4.461431 AGTTCGGTTAACCATTGATTTCCC 59.539 41.667 24.14 0.33 39.03 3.97
3422 3932 8.816894 ACAACTCTGAGAAAGATCAAGGTTATA 58.183 33.333 12.44 0.00 33.29 0.98
3425 3935 5.762218 CACAACTCTGAGAAAGATCAAGGTT 59.238 40.000 12.44 0.00 33.29 3.50
3473 6833 0.179163 GCAATGCGAACTACAAGGCC 60.179 55.000 0.00 0.00 0.00 5.19
3528 7213 4.525487 AGGTACATTACGAGAAACACCTCA 59.475 41.667 0.00 0.00 29.11 3.86
3601 7288 4.381411 AGAAGAGCTTGTAACAACCTGAC 58.619 43.478 0.00 0.00 0.00 3.51
3612 7299 3.201290 CGCCATGAATAGAAGAGCTTGT 58.799 45.455 0.00 0.00 0.00 3.16
3614 7301 2.171448 ACCGCCATGAATAGAAGAGCTT 59.829 45.455 0.00 0.00 0.00 3.74
3616 7303 2.139118 GACCGCCATGAATAGAAGAGC 58.861 52.381 0.00 0.00 0.00 4.09
3617 7304 2.223829 ACGACCGCCATGAATAGAAGAG 60.224 50.000 0.00 0.00 0.00 2.85
3638 7325 4.444876 CCACTTTCCTTCAAGAGAACCAGA 60.445 45.833 0.00 0.00 0.00 3.86
3650 7337 0.601841 TTCGACGCCCACTTTCCTTC 60.602 55.000 0.00 0.00 0.00 3.46
3660 7348 3.449789 GAAAAACACTTCGACGCCC 57.550 52.632 0.00 0.00 0.00 6.13
3679 7367 3.334691 TCACTGTTAGTAGGTGCATTGC 58.665 45.455 0.46 0.46 0.00 3.56
3685 7373 6.143438 CGTGTAGTTTTCACTGTTAGTAGGTG 59.857 42.308 0.00 0.00 34.06 4.00
3688 7376 8.786937 TTACGTGTAGTTTTCACTGTTAGTAG 57.213 34.615 0.00 0.00 34.06 2.57
3689 7377 9.748708 AATTACGTGTAGTTTTCACTGTTAGTA 57.251 29.630 0.00 0.00 34.06 1.82
3690 7378 8.652810 AATTACGTGTAGTTTTCACTGTTAGT 57.347 30.769 0.00 0.00 34.06 2.24
3693 7381 7.694784 CACAAATTACGTGTAGTTTTCACTGTT 59.305 33.333 0.00 0.00 34.06 3.16
3694 7382 7.184106 CACAAATTACGTGTAGTTTTCACTGT 58.816 34.615 0.00 0.00 34.06 3.55
3695 7383 6.631238 CCACAAATTACGTGTAGTTTTCACTG 59.369 38.462 0.00 0.00 34.06 3.66
3696 7384 6.316890 ACCACAAATTACGTGTAGTTTTCACT 59.683 34.615 0.00 0.00 36.99 3.41
3717 7429 5.368145 TCAAATGGATGTATCTAGCACCAC 58.632 41.667 0.00 0.00 0.00 4.16
3718 7430 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
3719 7431 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
3720 7432 5.858381 TCCTCAAATGGATGTATCTAGCAC 58.142 41.667 0.00 0.00 0.00 4.40
3721 7433 6.270695 TGATCCTCAAATGGATGTATCTAGCA 59.729 38.462 0.31 0.00 46.00 3.49
3722 7434 6.705302 TGATCCTCAAATGGATGTATCTAGC 58.295 40.000 0.31 0.00 46.00 3.42
3723 7435 7.333921 GCTTGATCCTCAAATGGATGTATCTAG 59.666 40.741 0.31 0.00 46.00 2.43
3724 7436 7.016957 AGCTTGATCCTCAAATGGATGTATCTA 59.983 37.037 0.31 0.00 46.00 1.98
3725 7437 6.002704 GCTTGATCCTCAAATGGATGTATCT 58.997 40.000 0.31 0.00 46.00 1.98
3726 7438 6.002704 AGCTTGATCCTCAAATGGATGTATC 58.997 40.000 0.31 0.00 46.00 2.24
3727 7439 5.950023 AGCTTGATCCTCAAATGGATGTAT 58.050 37.500 0.31 0.00 46.00 2.29
3728 7440 5.378230 AGCTTGATCCTCAAATGGATGTA 57.622 39.130 0.31 0.00 46.00 2.29
3729 7441 4.246712 AGCTTGATCCTCAAATGGATGT 57.753 40.909 0.31 0.00 46.00 3.06
3730 7442 5.593679 AAAGCTTGATCCTCAAATGGATG 57.406 39.130 0.00 0.00 46.00 3.51
3732 7444 5.335897 CGAAAAAGCTTGATCCTCAAATGGA 60.336 40.000 0.00 0.00 35.73 3.41
3733 7445 4.860907 CGAAAAAGCTTGATCCTCAAATGG 59.139 41.667 0.00 0.00 35.73 3.16
3734 7446 4.860907 CCGAAAAAGCTTGATCCTCAAATG 59.139 41.667 0.00 0.00 35.73 2.32
3735 7447 4.766891 TCCGAAAAAGCTTGATCCTCAAAT 59.233 37.500 0.00 0.00 35.73 2.32
3736 7448 4.023193 GTCCGAAAAAGCTTGATCCTCAAA 60.023 41.667 0.00 0.00 35.73 2.69
3737 7449 3.502211 GTCCGAAAAAGCTTGATCCTCAA 59.498 43.478 0.00 0.00 34.79 3.02
3738 7450 3.074412 GTCCGAAAAAGCTTGATCCTCA 58.926 45.455 0.00 0.00 0.00 3.86
3739 7451 2.094417 CGTCCGAAAAAGCTTGATCCTC 59.906 50.000 0.00 0.00 0.00 3.71
3740 7452 2.076863 CGTCCGAAAAAGCTTGATCCT 58.923 47.619 0.00 0.00 0.00 3.24
3741 7453 1.130561 CCGTCCGAAAAAGCTTGATCC 59.869 52.381 0.00 0.00 0.00 3.36
3742 7454 2.073816 TCCGTCCGAAAAAGCTTGATC 58.926 47.619 0.00 0.14 0.00 2.92
3743 7455 2.076863 CTCCGTCCGAAAAAGCTTGAT 58.923 47.619 0.00 0.00 0.00 2.57
3744 7456 1.508632 CTCCGTCCGAAAAAGCTTGA 58.491 50.000 0.00 0.00 0.00 3.02
3745 7457 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
3746 7458 0.395312 TCCTCCGTCCGAAAAAGCTT 59.605 50.000 0.00 0.00 0.00 3.74
3747 7459 0.395312 TTCCTCCGTCCGAAAAAGCT 59.605 50.000 0.00 0.00 0.00 3.74
3748 7460 0.796927 CTTCCTCCGTCCGAAAAAGC 59.203 55.000 0.00 0.00 0.00 3.51
3749 7461 2.165319 ACTTCCTCCGTCCGAAAAAG 57.835 50.000 0.00 0.00 0.00 2.27
3750 7462 3.258872 TCATACTTCCTCCGTCCGAAAAA 59.741 43.478 0.00 0.00 0.00 1.94
3751 7463 2.827322 TCATACTTCCTCCGTCCGAAAA 59.173 45.455 0.00 0.00 0.00 2.29
3752 7464 2.165030 GTCATACTTCCTCCGTCCGAAA 59.835 50.000 0.00 0.00 0.00 3.46
3753 7465 1.747355 GTCATACTTCCTCCGTCCGAA 59.253 52.381 0.00 0.00 0.00 4.30
3754 7466 1.340308 TGTCATACTTCCTCCGTCCGA 60.340 52.381 0.00 0.00 0.00 4.55
3755 7467 1.065701 CTGTCATACTTCCTCCGTCCG 59.934 57.143 0.00 0.00 0.00 4.79
3756 7468 2.100989 ACTGTCATACTTCCTCCGTCC 58.899 52.381 0.00 0.00 0.00 4.79
3757 7469 2.492484 ACACTGTCATACTTCCTCCGTC 59.508 50.000 0.00 0.00 0.00 4.79
3758 7470 2.231478 CACACTGTCATACTTCCTCCGT 59.769 50.000 0.00 0.00 0.00 4.69
3759 7471 2.417379 CCACACTGTCATACTTCCTCCG 60.417 54.545 0.00 0.00 0.00 4.63
3760 7472 2.678190 GCCACACTGTCATACTTCCTCC 60.678 54.545 0.00 0.00 0.00 4.30
3761 7473 2.028112 TGCCACACTGTCATACTTCCTC 60.028 50.000 0.00 0.00 0.00 3.71
3762 7474 1.977854 TGCCACACTGTCATACTTCCT 59.022 47.619 0.00 0.00 0.00 3.36
3763 7475 2.472695 TGCCACACTGTCATACTTCC 57.527 50.000 0.00 0.00 0.00 3.46
3764 7476 3.372206 GTGATGCCACACTGTCATACTTC 59.628 47.826 3.62 0.00 42.72 3.01
3765 7477 3.338249 GTGATGCCACACTGTCATACTT 58.662 45.455 3.62 0.00 42.72 2.24
3766 7478 2.355108 GGTGATGCCACACTGTCATACT 60.355 50.000 9.56 0.00 44.93 2.12
3767 7479 2.009774 GGTGATGCCACACTGTCATAC 58.990 52.381 9.56 0.00 44.93 2.39
3780 7492 0.682209 ATGGCAACCTGAGGTGATGC 60.682 55.000 17.81 17.81 38.35 3.91
3825 7537 1.214305 ATTGCAGGGGCCTGAACCTA 61.214 55.000 0.84 0.00 46.30 3.08
3849 7561 5.648092 AGCAACTTGATACCAGGATTGTTAC 59.352 40.000 0.00 0.00 0.00 2.50
3870 7582 1.228245 GAGGCCACCACTCAAAGCA 60.228 57.895 5.01 0.00 35.09 3.91
3871 7583 0.538287 AAGAGGCCACCACTCAAAGC 60.538 55.000 5.01 0.00 37.43 3.51
3872 7584 1.202806 TCAAGAGGCCACCACTCAAAG 60.203 52.381 5.01 0.00 37.43 2.77
3899 7629 0.822944 TGTGCAACTCCACATGTGGG 60.823 55.000 38.12 30.35 42.83 4.61
3906 7636 0.179018 AGTTCCCTGTGCAACTCCAC 60.179 55.000 0.00 0.00 38.04 4.02
3912 7642 2.727123 TCTGAAAGTTCCCTGTGCAA 57.273 45.000 0.00 0.00 33.76 4.08
3937 7667 6.998673 ACCAACTCTATAGCATTTCCCAATAC 59.001 38.462 0.00 0.00 0.00 1.89
3941 7671 5.045213 TCAACCAACTCTATAGCATTTCCCA 60.045 40.000 0.00 0.00 0.00 4.37
3991 7721 7.176515 TCACCCACATTTACATAATGCATATCC 59.823 37.037 0.00 0.00 0.00 2.59
3993 7723 7.505248 TGTCACCCACATTTACATAATGCATAT 59.495 33.333 0.00 0.00 0.00 1.78
4047 7777 3.877508 CCTCCGTCCCACAATAGAAAATC 59.122 47.826 0.00 0.00 0.00 2.17
4050 7780 1.557832 CCCTCCGTCCCACAATAGAAA 59.442 52.381 0.00 0.00 0.00 2.52
4053 7783 0.753262 CTCCCTCCGTCCCACAATAG 59.247 60.000 0.00 0.00 0.00 1.73
4061 7791 1.043673 AGCATGTACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
4062 7792 1.688772 TAGCATGTACTCCCTCCGTC 58.311 55.000 0.00 0.00 0.00 4.79
4065 7795 4.195225 GCTATTAGCATGTACTCCCTCC 57.805 50.000 10.83 0.00 41.89 4.30
4084 7814 2.455983 CGTACACGTGAAGCAACTGCT 61.456 52.381 25.01 0.00 43.53 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.