Multiple sequence alignment - TraesCS1D01G355800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G355800 chr1D 100.000 4917 0 0 1 4917 440397040 440401956 0.000000e+00 9081.0
1 TraesCS1D01G355800 chr1D 100.000 361 0 0 5244 5604 440402283 440402643 0.000000e+00 667.0
2 TraesCS1D01G355800 chr1D 93.750 48 3 0 275 322 232509611 232509564 7.790000e-09 73.1
3 TraesCS1D01G355800 chr1A 91.779 4890 259 67 1 4810 537547659 537542833 0.000000e+00 6671.0
4 TraesCS1D01G355800 chr1A 82.738 168 20 6 458 620 394236676 394236513 2.100000e-29 141.0
5 TraesCS1D01G355800 chr1B 92.382 4332 205 57 651 4912 597800222 597804498 0.000000e+00 6056.0
6 TraesCS1D01G355800 chr1B 91.089 101 4 2 222 318 597800078 597800177 1.270000e-26 132.0
7 TraesCS1D01G355800 chr4B 83.714 350 42 13 286 625 99577807 99578151 3.260000e-82 316.0
8 TraesCS1D01G355800 chr4B 77.882 321 52 13 311 621 34875331 34875020 1.240000e-41 182.0
9 TraesCS1D01G355800 chr4A 82.006 339 45 10 275 606 593825852 593826181 1.990000e-69 274.0
10 TraesCS1D01G355800 chr4A 80.982 326 43 12 270 582 40284981 40285300 2.020000e-59 241.0
11 TraesCS1D01G355800 chr4A 92.857 70 5 0 3960 4029 638722997 638723066 9.930000e-18 102.0
12 TraesCS1D01G355800 chr2A 80.838 334 39 18 302 623 70662455 70662775 7.260000e-59 239.0
13 TraesCS1D01G355800 chr2A 93.151 73 5 0 3960 4032 429932469 429932541 2.130000e-19 108.0
14 TraesCS1D01G355800 chr2D 78.841 345 45 19 310 644 590031673 590031347 2.050000e-49 207.0
15 TraesCS1D01G355800 chr3A 80.727 275 39 9 354 621 57197622 57197889 9.520000e-48 202.0
16 TraesCS1D01G355800 chr3A 88.000 75 9 0 310 384 580643944 580644018 7.730000e-14 89.8
17 TraesCS1D01G355800 chr5A 95.775 71 3 0 3960 4030 569291031 569290961 1.280000e-21 115.0
18 TraesCS1D01G355800 chr6A 94.203 69 4 0 3959 4027 605322733 605322665 7.680000e-19 106.0
19 TraesCS1D01G355800 chr7B 92.754 69 5 0 3959 4027 740072377 740072309 3.570000e-17 100.0
20 TraesCS1D01G355800 chr5B 92.754 69 5 0 3959 4027 385597915 385597983 3.570000e-17 100.0
21 TraesCS1D01G355800 chr6B 89.474 76 8 0 3958 4033 552512851 552512776 4.620000e-16 97.1
22 TraesCS1D01G355800 chr5D 93.750 48 3 0 275 322 432003586 432003539 7.790000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G355800 chr1D 440397040 440402643 5603 False 4874 9081 100.0000 1 5604 2 chr1D.!!$F1 5603
1 TraesCS1D01G355800 chr1A 537542833 537547659 4826 True 6671 6671 91.7790 1 4810 1 chr1A.!!$R2 4809
2 TraesCS1D01G355800 chr1B 597800078 597804498 4420 False 3094 6056 91.7355 222 4912 2 chr1B.!!$F1 4690

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.323629 TGTTTCATCTCGGGGGACAC 59.676 55.000 0.00 0.00 0.00 3.67 F
708 751 0.461339 TAAAGCCACGATTCGGGAGC 60.461 55.000 10.51 11.49 28.17 4.70 F
1650 1715 0.109597 CATTGCTGCCGTGAAAGACC 60.110 55.000 0.00 0.00 0.00 3.85 F
2149 2215 2.041081 TGAAATGGGAGGTAACCTGTGG 59.959 50.000 0.00 0.00 31.76 4.17 F
3095 3168 1.885388 CGTGTTCGTGGTGGCTGAA 60.885 57.895 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1076 1126 0.384974 GAGGATTCGCGCGAGTCTAG 60.385 60.000 40.89 12.21 32.45 2.43 R
2149 2215 1.136110 CCCTGGTCACCAAAACAACAC 59.864 52.381 0.00 0.00 30.80 3.32 R
2706 2779 1.536766 TGCAAAAATCTCACTGGCTCG 59.463 47.619 0.00 0.00 0.00 5.03 R
4128 4245 0.821711 AAACTGGGCGCACTAAGCAA 60.822 50.000 12.74 0.00 46.13 3.91 R
4609 4727 0.035458 ACGGACAAAGGAAGGAGCAG 59.965 55.000 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.856126 TTTCTTTAGGTTCGTGCATACTG 57.144 39.130 0.00 0.00 0.00 2.74
33 34 5.276868 GGTTCGTGCATACTGTTACATGATC 60.277 44.000 0.00 0.00 0.00 2.92
34 35 5.262588 TCGTGCATACTGTTACATGATCT 57.737 39.130 0.00 0.00 0.00 2.75
38 39 6.142958 CGTGCATACTGTTACATGATCTAGTG 59.857 42.308 0.00 0.00 0.00 2.74
40 41 5.406780 GCATACTGTTACATGATCTAGTGGC 59.593 44.000 0.00 4.16 0.00 5.01
74 75 9.649167 ATTTGGCTATACACTTATACGTATTCC 57.351 33.333 14.33 1.40 31.02 3.01
78 79 8.950210 GGCTATACACTTATACGTATTCCTGTA 58.050 37.037 14.33 15.14 31.02 2.74
84 85 9.745880 ACACTTATACGTATTCCTGTAAGATTG 57.254 33.333 14.33 7.72 34.07 2.67
90 91 9.962783 ATACGTATTCCTGTAAGATTGTTCTAC 57.037 33.333 1.14 0.00 34.07 2.59
93 94 6.893020 ATTCCTGTAAGATTGTTCTACCCT 57.107 37.500 0.00 0.00 34.07 4.34
111 112 3.916989 ACCCTGGGAGAGTTAAGATTTGT 59.083 43.478 22.23 0.00 0.00 2.83
135 136 1.651737 TCTTGTTTCATCTCGGGGGA 58.348 50.000 0.00 0.00 0.00 4.81
136 137 1.278127 TCTTGTTTCATCTCGGGGGAC 59.722 52.381 0.00 0.00 0.00 4.46
137 138 1.003118 CTTGTTTCATCTCGGGGGACA 59.997 52.381 0.00 0.00 0.00 4.02
138 139 0.323629 TGTTTCATCTCGGGGGACAC 59.676 55.000 0.00 0.00 0.00 3.67
139 140 0.323629 GTTTCATCTCGGGGGACACA 59.676 55.000 0.00 0.00 0.00 3.72
140 141 1.060729 TTTCATCTCGGGGGACACAA 58.939 50.000 0.00 0.00 0.00 3.33
141 142 0.613260 TTCATCTCGGGGGACACAAG 59.387 55.000 0.00 0.00 0.00 3.16
143 144 1.080354 ATCTCGGGGGACACAAGGA 59.920 57.895 0.00 0.00 0.00 3.36
144 145 1.265454 ATCTCGGGGGACACAAGGAC 61.265 60.000 0.00 0.00 0.00 3.85
145 146 3.296709 CTCGGGGGACACAAGGACG 62.297 68.421 0.00 0.00 0.00 4.79
146 147 3.622826 CGGGGGACACAAGGACGT 61.623 66.667 0.00 0.00 0.00 4.34
147 148 2.346365 GGGGGACACAAGGACGTC 59.654 66.667 7.13 7.13 0.00 4.34
148 149 2.513259 GGGGGACACAAGGACGTCA 61.513 63.158 18.91 0.00 33.66 4.35
149 150 1.448497 GGGGACACAAGGACGTCAA 59.552 57.895 18.91 0.00 33.66 3.18
177 178 6.604735 AGAATCCTATCACATTTGTTACGC 57.395 37.500 0.00 0.00 0.00 4.42
195 196 6.041182 TGTTACGCCTTAGGATAATAAGCTCA 59.959 38.462 0.69 0.00 32.42 4.26
273 287 4.566907 GGGATGTTTTAGTGGCTAGAACCA 60.567 45.833 0.00 0.00 32.36 3.67
393 433 8.081633 ACAATGTACATGTGTGTAAATTTCCAG 58.918 33.333 9.63 0.00 43.19 3.86
400 440 7.069331 ACATGTGTGTAAATTTCCAGGAAGAAA 59.931 33.333 1.07 0.00 37.18 2.52
415 455 4.275936 AGGAAGAAACACGTTGAAATGAGG 59.724 41.667 0.00 0.00 0.00 3.86
423 463 1.662876 CGTTGAAATGAGGGTTGTGCG 60.663 52.381 0.00 0.00 0.00 5.34
522 562 5.066375 TCGCATTTCAAGGTATTTCATCCTG 59.934 40.000 0.00 0.00 33.97 3.86
565 605 6.658816 ACATTTCATCCTTGTACACTTGCATA 59.341 34.615 0.00 0.00 0.00 3.14
648 691 1.463553 CCTGGTCACCAAAACCCTGC 61.464 60.000 0.00 0.00 35.84 4.85
653 696 2.514803 GTCACCAAAACCCTGCAGTAT 58.485 47.619 13.81 0.00 0.00 2.12
704 747 5.924475 ATTAGATTAAAGCCACGATTCGG 57.076 39.130 11.29 0.00 0.00 4.30
708 751 0.461339 TAAAGCCACGATTCGGGAGC 60.461 55.000 10.51 11.49 28.17 4.70
1022 1072 4.675303 CACACCCCCTCTCCCCCA 62.675 72.222 0.00 0.00 0.00 4.96
1130 1180 3.257561 CGATGCAGAAGTCCGGCG 61.258 66.667 0.00 0.00 38.88 6.46
1149 1199 0.394625 GGGAGAGACTGGTAGCGAGT 60.395 60.000 0.00 0.00 0.00 4.18
1207 1258 4.427661 GCGAGCGCAGAGTGACCT 62.428 66.667 11.47 0.00 41.49 3.85
1217 1268 3.471680 GCAGAGTGACCTGACTTTTTCT 58.528 45.455 5.45 0.00 36.29 2.52
1221 1272 2.092429 AGTGACCTGACTTTTTCTGCCA 60.092 45.455 0.00 0.00 0.00 4.92
1480 1531 0.844660 GGATCTGGGGTTTAGGGTCC 59.155 60.000 0.00 0.00 0.00 4.46
1486 1537 3.393106 GGTTTAGGGTCCGCGGGA 61.393 66.667 27.83 9.51 0.00 5.14
1488 1539 1.449070 GTTTAGGGTCCGCGGGAAG 60.449 63.158 27.83 0.00 31.38 3.46
1517 1573 3.062466 GCGGAAAGGTGGCCTTCC 61.062 66.667 10.78 10.78 43.92 3.46
1519 1575 2.361230 GGAAAGGTGGCCTTCCGG 60.361 66.667 3.32 0.00 43.92 5.14
1530 1586 1.003839 CCTTCCGGCAACTGCTGTA 60.004 57.895 9.58 0.00 45.66 2.74
1531 1587 1.021390 CCTTCCGGCAACTGCTGTAG 61.021 60.000 9.58 6.39 45.66 2.74
1540 1603 3.452474 GCAACTGCTGTAGGATAGTCTG 58.548 50.000 0.00 0.00 38.21 3.51
1541 1604 3.118956 GCAACTGCTGTAGGATAGTCTGT 60.119 47.826 0.00 0.00 38.21 3.41
1543 1606 4.727507 ACTGCTGTAGGATAGTCTGTTG 57.272 45.455 0.00 0.00 0.00 3.33
1544 1607 3.118956 ACTGCTGTAGGATAGTCTGTTGC 60.119 47.826 0.00 0.00 0.00 4.17
1545 1608 3.099905 TGCTGTAGGATAGTCTGTTGCT 58.900 45.455 0.00 0.00 0.00 3.91
1546 1609 4.278310 TGCTGTAGGATAGTCTGTTGCTA 58.722 43.478 0.00 0.00 0.00 3.49
1547 1610 4.339530 TGCTGTAGGATAGTCTGTTGCTAG 59.660 45.833 0.00 0.00 0.00 3.42
1548 1611 4.339814 GCTGTAGGATAGTCTGTTGCTAGT 59.660 45.833 0.00 0.00 0.00 2.57
1549 1612 5.163499 GCTGTAGGATAGTCTGTTGCTAGTT 60.163 44.000 0.00 0.00 0.00 2.24
1550 1613 6.039493 GCTGTAGGATAGTCTGTTGCTAGTTA 59.961 42.308 0.00 0.00 0.00 2.24
1551 1614 7.330900 TGTAGGATAGTCTGTTGCTAGTTAC 57.669 40.000 0.00 0.00 0.00 2.50
1552 1615 7.117397 TGTAGGATAGTCTGTTGCTAGTTACT 58.883 38.462 0.00 0.00 0.00 2.24
1553 1616 8.270030 TGTAGGATAGTCTGTTGCTAGTTACTA 58.730 37.037 0.00 0.00 0.00 1.82
1554 1617 7.811117 AGGATAGTCTGTTGCTAGTTACTAG 57.189 40.000 14.56 14.56 37.16 2.57
1564 1627 7.928103 TGTTGCTAGTTACTAGTAGTATCTGC 58.072 38.462 22.92 21.97 36.53 4.26
1568 1631 9.132923 TGCTAGTTACTAGTAGTATCTGCAATT 57.867 33.333 24.54 10.13 34.95 2.32
1585 1649 8.565896 TCTGCAATTACACTAAAGATTCATGT 57.434 30.769 0.00 0.00 0.00 3.21
1610 1675 5.984926 TGATGAAGATTGTTTTGAAGTTGGC 59.015 36.000 0.00 0.00 0.00 4.52
1626 1691 4.798574 AGTTGGCGATTTTGATTCAGTTC 58.201 39.130 0.00 0.00 0.00 3.01
1650 1715 0.109597 CATTGCTGCCGTGAAAGACC 60.110 55.000 0.00 0.00 0.00 3.85
2091 2157 3.323115 TGCCCAGTAAGATATCTGCTCTG 59.677 47.826 5.86 13.81 0.00 3.35
2149 2215 2.041081 TGAAATGGGAGGTAACCTGTGG 59.959 50.000 0.00 0.00 31.76 4.17
2228 2294 4.704833 GAGAAGCAGGGCGCACCA 62.705 66.667 5.73 0.00 46.13 4.17
2626 2695 8.962884 TCATACACACTATTATGTCTTGCATT 57.037 30.769 0.00 0.00 38.94 3.56
2706 2779 5.177696 ACTTCGTAATCTTGTTGTCTTCTGC 59.822 40.000 0.00 0.00 0.00 4.26
2807 2880 1.997606 GTTTGGACTCGTAACATCCCG 59.002 52.381 0.00 0.00 0.00 5.14
2921 2994 5.163913 GCTCACTTCACTGATCATGTACAAC 60.164 44.000 0.00 0.00 0.00 3.32
3030 3103 3.386402 TCTGGTCGTGATATGCAATACCA 59.614 43.478 0.00 0.00 39.78 3.25
3032 3105 4.314961 TGGTCGTGATATGCAATACCATC 58.685 43.478 0.00 0.00 38.16 3.51
3095 3168 1.885388 CGTGTTCGTGGTGGCTGAA 60.885 57.895 0.00 0.00 0.00 3.02
3138 3211 6.748658 CACACATGTACATTTTATCAGGCAAG 59.251 38.462 5.37 0.00 0.00 4.01
3146 3219 5.048504 ACATTTTATCAGGCAAGTCACACAG 60.049 40.000 0.00 0.00 0.00 3.66
3503 3594 4.464008 CCATTATGCCTTGTACTCCATGT 58.536 43.478 0.00 0.00 0.00 3.21
3514 3605 5.916661 TGTACTCCATGTCTCTTAACTCC 57.083 43.478 0.00 0.00 0.00 3.85
3523 3614 2.424246 GTCTCTTAACTCCCTGGAGACG 59.576 54.545 19.85 5.12 44.53 4.18
3524 3615 2.041350 TCTCTTAACTCCCTGGAGACGT 59.959 50.000 19.85 7.05 44.53 4.34
3832 3923 4.341520 AGTTAGTCTTATCTTAGGCCACCG 59.658 45.833 5.01 0.00 0.00 4.94
3837 3928 3.635373 TCTTATCTTAGGCCACCGTGTAG 59.365 47.826 5.01 0.00 0.00 2.74
3902 3994 8.998277 TCTTAGCATAATCTCTAGTAACCAGT 57.002 34.615 0.00 0.00 0.00 4.00
3903 3995 9.422681 TCTTAGCATAATCTCTAGTAACCAGTT 57.577 33.333 0.00 0.00 0.00 3.16
3908 4000 8.613482 GCATAATCTCTAGTAACCAGTTTTTCC 58.387 37.037 0.00 0.00 0.00 3.13
3919 4011 9.582648 AGTAACCAGTTTTTCCTAAATATGTGT 57.417 29.630 0.00 0.00 0.00 3.72
3940 4032 9.851686 ATGTGTTTGGAGATATTATGCTAAGAA 57.148 29.630 0.00 0.00 0.00 2.52
3974 4066 3.850752 TCTTGTTTCTCTCTCCTCCACT 58.149 45.455 0.00 0.00 0.00 4.00
4128 4245 8.254508 TGTTGTTAAAACAGCAATTACCTTTCT 58.745 29.630 9.56 0.00 45.17 2.52
4193 4310 7.926555 TCCTGCTAGATAACAATTACTAACTGC 59.073 37.037 0.00 0.00 0.00 4.40
4270 4387 4.195416 CTGAAGGAGAAAGGTTCTATGGC 58.805 47.826 0.00 0.00 40.87 4.40
4430 4547 4.511527 AGATTGCTGTACCATCTCAAGTG 58.488 43.478 0.00 0.00 0.00 3.16
4438 4555 1.145738 ACCATCTCAAGTGCCACCTTT 59.854 47.619 0.00 0.00 0.00 3.11
4448 4565 4.584638 AGTGCCACCTTTACCAATATCA 57.415 40.909 0.00 0.00 0.00 2.15
4467 4584 3.242518 TCATCGACGCTGTCAAGTTTAG 58.757 45.455 8.91 0.00 32.09 1.85
4494 4611 9.812347 ATTTTCCTATCACCATATATTTCTGCA 57.188 29.630 0.00 0.00 0.00 4.41
4556 4674 2.026915 CCATTCATCCCTGTGTCTGTCA 60.027 50.000 0.00 0.00 0.00 3.58
4557 4675 3.371273 CCATTCATCCCTGTGTCTGTCAT 60.371 47.826 0.00 0.00 0.00 3.06
4574 4692 6.313905 GTCTGTCATGACTTTGTAAATCCGAT 59.686 38.462 25.55 0.00 34.39 4.18
4615 4733 3.543680 TTGTAGGCTATGAACTGCTCC 57.456 47.619 0.00 0.00 0.00 4.70
4645 4763 4.174762 GTCCGTCATCTTCAGGTTTCTAC 58.825 47.826 0.00 0.00 0.00 2.59
4676 4794 3.650070 TGCGAGTGATCCATCAGATAC 57.350 47.619 0.00 0.00 37.51 2.24
4725 4861 0.982704 ATCAGCTGGCTTGTGAGTCT 59.017 50.000 15.13 0.00 0.00 3.24
4726 4862 0.034476 TCAGCTGGCTTGTGAGTCTG 59.966 55.000 15.13 0.00 0.00 3.51
4734 4870 2.289945 GGCTTGTGAGTCTGTTGGATCT 60.290 50.000 0.00 0.00 0.00 2.75
4784 4920 0.110056 CGTTGCAGCAACACATCCTC 60.110 55.000 32.46 8.36 43.70 3.71
4789 4925 1.542915 GCAGCAACACATCCTCATGTT 59.457 47.619 0.00 0.00 40.66 2.71
4804 4940 1.205179 CATGTTATTGGGCTTGCAGCA 59.795 47.619 9.78 0.00 44.75 4.41
4820 4956 0.111061 AGCACTGCTGGGTTTCATCA 59.889 50.000 1.67 0.00 37.57 3.07
4832 4968 0.893270 TTTCATCAGGGGTGCCGTTG 60.893 55.000 0.00 0.00 0.00 4.10
4834 4970 1.195442 TCATCAGGGGTGCCGTTGTA 61.195 55.000 0.00 0.00 0.00 2.41
4841 4977 2.428622 GTGCCGTTGTACCCAGGT 59.571 61.111 0.00 0.00 0.00 4.00
4842 4978 1.672898 GTGCCGTTGTACCCAGGTA 59.327 57.895 0.00 0.00 0.00 3.08
4886 5022 2.267351 CCATGCAACAACGCTCCCA 61.267 57.895 0.00 0.00 0.00 4.37
4887 5023 1.081242 CATGCAACAACGCTCCCAC 60.081 57.895 0.00 0.00 0.00 4.61
4891 5027 1.724582 GCAACAACGCTCCCACTTGT 61.725 55.000 0.00 0.00 0.00 3.16
4896 5032 0.324943 AACGCTCCCACTTGTAGCAT 59.675 50.000 0.00 0.00 35.98 3.79
4901 5037 0.676466 TCCCACTTGTAGCATTGCCG 60.676 55.000 4.70 0.00 0.00 5.69
4912 5048 1.080569 CATTGCCGGGTGTTTGCTC 60.081 57.895 2.18 0.00 0.00 4.26
4913 5049 2.275380 ATTGCCGGGTGTTTGCTCC 61.275 57.895 2.18 0.00 0.00 4.70
4914 5050 2.713531 ATTGCCGGGTGTTTGCTCCT 62.714 55.000 2.18 0.00 0.00 3.69
4915 5051 2.597510 GCCGGGTGTTTGCTCCTT 60.598 61.111 2.18 0.00 0.00 3.36
4916 5052 2.919494 GCCGGGTGTTTGCTCCTTG 61.919 63.158 2.18 0.00 0.00 3.61
5260 5396 3.313874 CATGACGAGCCCCCTTCT 58.686 61.111 0.00 0.00 0.00 2.85
5261 5397 1.144936 CATGACGAGCCCCCTTCTC 59.855 63.158 0.00 0.00 0.00 2.87
5262 5398 2.066999 ATGACGAGCCCCCTTCTCC 61.067 63.158 0.00 0.00 0.00 3.71
5263 5399 3.471806 GACGAGCCCCCTTCTCCC 61.472 72.222 0.00 0.00 0.00 4.30
5265 5401 4.806339 CGAGCCCCCTTCTCCCCT 62.806 72.222 0.00 0.00 0.00 4.79
5266 5402 2.703430 GAGCCCCCTTCTCCCCTA 59.297 66.667 0.00 0.00 0.00 3.53
5267 5403 1.460497 GAGCCCCCTTCTCCCCTAG 60.460 68.421 0.00 0.00 0.00 3.02
5268 5404 3.172106 GCCCCCTTCTCCCCTAGC 61.172 72.222 0.00 0.00 0.00 3.42
5269 5405 2.372688 CCCCCTTCTCCCCTAGCA 59.627 66.667 0.00 0.00 0.00 3.49
5270 5406 2.073101 CCCCCTTCTCCCCTAGCAC 61.073 68.421 0.00 0.00 0.00 4.40
5271 5407 1.306997 CCCCTTCTCCCCTAGCACA 60.307 63.158 0.00 0.00 0.00 4.57
5272 5408 0.695803 CCCCTTCTCCCCTAGCACAT 60.696 60.000 0.00 0.00 0.00 3.21
5273 5409 1.216990 CCCTTCTCCCCTAGCACATT 58.783 55.000 0.00 0.00 0.00 2.71
5274 5410 1.133976 CCCTTCTCCCCTAGCACATTG 60.134 57.143 0.00 0.00 0.00 2.82
5275 5411 1.673168 CTTCTCCCCTAGCACATTGC 58.327 55.000 0.00 0.00 45.46 3.56
5285 5421 3.324170 GCACATTGCTGCTCACATC 57.676 52.632 0.00 0.00 40.96 3.06
5286 5422 0.522705 GCACATTGCTGCTCACATCG 60.523 55.000 0.00 0.00 40.96 3.84
5287 5423 0.522705 CACATTGCTGCTCACATCGC 60.523 55.000 0.00 0.00 0.00 4.58
5288 5424 1.063649 CATTGCTGCTCACATCGCC 59.936 57.895 0.00 0.00 0.00 5.54
5289 5425 1.377594 ATTGCTGCTCACATCGCCA 60.378 52.632 0.00 0.00 0.00 5.69
5290 5426 1.651240 ATTGCTGCTCACATCGCCAC 61.651 55.000 0.00 0.00 0.00 5.01
5291 5427 2.743538 GCTGCTCACATCGCCACA 60.744 61.111 0.00 0.00 0.00 4.17
5292 5428 2.110967 GCTGCTCACATCGCCACAT 61.111 57.895 0.00 0.00 0.00 3.21
5293 5429 2.012237 CTGCTCACATCGCCACATC 58.988 57.895 0.00 0.00 0.00 3.06
5294 5430 1.434622 CTGCTCACATCGCCACATCC 61.435 60.000 0.00 0.00 0.00 3.51
5295 5431 1.153289 GCTCACATCGCCACATCCT 60.153 57.895 0.00 0.00 0.00 3.24
5296 5432 1.156645 GCTCACATCGCCACATCCTC 61.157 60.000 0.00 0.00 0.00 3.71
5297 5433 0.531532 CTCACATCGCCACATCCTCC 60.532 60.000 0.00 0.00 0.00 4.30
5298 5434 1.884464 CACATCGCCACATCCTCCG 60.884 63.158 0.00 0.00 0.00 4.63
5299 5435 2.969238 CATCGCCACATCCTCCGC 60.969 66.667 0.00 0.00 0.00 5.54
5300 5436 3.157252 ATCGCCACATCCTCCGCT 61.157 61.111 0.00 0.00 0.00 5.52
5301 5437 2.735772 ATCGCCACATCCTCCGCTT 61.736 57.895 0.00 0.00 0.00 4.68
5302 5438 2.930385 ATCGCCACATCCTCCGCTTG 62.930 60.000 0.00 0.00 0.00 4.01
5303 5439 3.512516 GCCACATCCTCCGCTTGC 61.513 66.667 0.00 0.00 0.00 4.01
5304 5440 2.046023 CCACATCCTCCGCTTGCA 60.046 61.111 0.00 0.00 0.00 4.08
5305 5441 1.675310 CCACATCCTCCGCTTGCAA 60.675 57.895 0.00 0.00 0.00 4.08
5306 5442 1.033746 CCACATCCTCCGCTTGCAAT 61.034 55.000 0.00 0.00 0.00 3.56
5307 5443 0.099968 CACATCCTCCGCTTGCAATG 59.900 55.000 0.00 0.00 0.00 2.82
5308 5444 0.322816 ACATCCTCCGCTTGCAATGT 60.323 50.000 0.00 0.00 0.00 2.71
5309 5445 0.813184 CATCCTCCGCTTGCAATGTT 59.187 50.000 0.00 0.00 0.00 2.71
5310 5446 0.813184 ATCCTCCGCTTGCAATGTTG 59.187 50.000 0.00 0.00 0.00 3.33
5311 5447 0.250684 TCCTCCGCTTGCAATGTTGA 60.251 50.000 0.00 0.00 0.00 3.18
5312 5448 0.813184 CCTCCGCTTGCAATGTTGAT 59.187 50.000 0.00 0.00 0.00 2.57
5313 5449 1.468565 CCTCCGCTTGCAATGTTGATG 60.469 52.381 0.00 0.00 0.00 3.07
5314 5450 0.527113 TCCGCTTGCAATGTTGATGG 59.473 50.000 0.00 0.00 0.00 3.51
5315 5451 0.244450 CCGCTTGCAATGTTGATGGT 59.756 50.000 0.00 0.00 0.00 3.55
5316 5452 1.621107 CGCTTGCAATGTTGATGGTC 58.379 50.000 0.00 0.00 0.00 4.02
5317 5453 1.068402 CGCTTGCAATGTTGATGGTCA 60.068 47.619 0.00 0.00 0.00 4.02
5318 5454 2.331194 GCTTGCAATGTTGATGGTCAC 58.669 47.619 0.00 0.00 0.00 3.67
5319 5455 2.029649 GCTTGCAATGTTGATGGTCACT 60.030 45.455 0.00 0.00 0.00 3.41
5320 5456 3.829948 CTTGCAATGTTGATGGTCACTC 58.170 45.455 0.00 0.00 0.00 3.51
5321 5457 2.161855 TGCAATGTTGATGGTCACTCC 58.838 47.619 0.00 0.00 0.00 3.85
5322 5458 2.224843 TGCAATGTTGATGGTCACTCCT 60.225 45.455 0.00 0.00 37.07 3.69
5323 5459 2.821969 GCAATGTTGATGGTCACTCCTT 59.178 45.455 0.00 0.00 37.07 3.36
5324 5460 3.256631 GCAATGTTGATGGTCACTCCTTT 59.743 43.478 0.00 0.00 37.07 3.11
5325 5461 4.458989 GCAATGTTGATGGTCACTCCTTTA 59.541 41.667 0.00 0.00 37.07 1.85
5326 5462 5.619981 GCAATGTTGATGGTCACTCCTTTAC 60.620 44.000 0.00 0.00 37.07 2.01
5327 5463 4.974645 TGTTGATGGTCACTCCTTTACT 57.025 40.909 0.00 0.00 37.07 2.24
5328 5464 4.641396 TGTTGATGGTCACTCCTTTACTG 58.359 43.478 0.00 0.00 37.07 2.74
5329 5465 3.334583 TGATGGTCACTCCTTTACTGC 57.665 47.619 0.00 0.00 37.07 4.40
5330 5466 2.906389 TGATGGTCACTCCTTTACTGCT 59.094 45.455 0.00 0.00 37.07 4.24
5331 5467 2.839486 TGGTCACTCCTTTACTGCTG 57.161 50.000 0.00 0.00 37.07 4.41
5332 5468 1.270839 TGGTCACTCCTTTACTGCTGC 60.271 52.381 0.00 0.00 37.07 5.25
5333 5469 1.270839 GGTCACTCCTTTACTGCTGCA 60.271 52.381 0.88 0.88 0.00 4.41
5334 5470 2.072298 GTCACTCCTTTACTGCTGCAG 58.928 52.381 27.02 27.02 37.52 4.41
5335 5471 0.801251 CACTCCTTTACTGCTGCAGC 59.199 55.000 31.89 31.89 42.50 5.25
5349 5485 2.807045 CAGCACCGACGAGCACTC 60.807 66.667 13.37 0.00 0.00 3.51
5350 5486 4.057428 AGCACCGACGAGCACTCC 62.057 66.667 13.37 0.00 0.00 3.85
5352 5488 3.374402 CACCGACGAGCACTCCCT 61.374 66.667 0.00 0.00 0.00 4.20
5353 5489 2.600769 ACCGACGAGCACTCCCTT 60.601 61.111 0.00 0.00 0.00 3.95
5354 5490 2.125912 CCGACGAGCACTCCCTTG 60.126 66.667 0.00 0.00 0.00 3.61
5355 5491 2.811317 CGACGAGCACTCCCTTGC 60.811 66.667 0.00 0.00 43.34 4.01
5356 5492 2.343758 GACGAGCACTCCCTTGCA 59.656 61.111 0.00 0.00 45.62 4.08
5357 5493 1.739562 GACGAGCACTCCCTTGCAG 60.740 63.158 0.00 0.00 45.62 4.41
5358 5494 3.123620 CGAGCACTCCCTTGCAGC 61.124 66.667 0.00 0.00 45.62 5.25
5359 5495 2.033141 GAGCACTCCCTTGCAGCA 59.967 61.111 0.00 0.00 45.62 4.41
5360 5496 2.033757 AGCACTCCCTTGCAGCAG 59.966 61.111 0.00 0.00 45.62 4.24
5361 5497 3.745803 GCACTCCCTTGCAGCAGC 61.746 66.667 0.00 0.00 42.49 5.25
5362 5498 3.429141 CACTCCCTTGCAGCAGCG 61.429 66.667 0.00 0.00 46.23 5.18
5383 5519 4.659172 CGGCCCTGACCCTTGCAA 62.659 66.667 0.00 0.00 0.00 4.08
5384 5520 2.991540 GGCCCTGACCCTTGCAAC 60.992 66.667 0.00 0.00 0.00 4.17
5385 5521 2.203480 GCCCTGACCCTTGCAACA 60.203 61.111 0.00 0.00 0.00 3.33
5386 5522 2.564721 GCCCTGACCCTTGCAACAC 61.565 63.158 0.00 0.00 0.00 3.32
5387 5523 1.903404 CCCTGACCCTTGCAACACC 60.903 63.158 0.00 0.00 0.00 4.16
5388 5524 1.152777 CCTGACCCTTGCAACACCA 60.153 57.895 0.00 0.00 0.00 4.17
5389 5525 1.174712 CCTGACCCTTGCAACACCAG 61.175 60.000 0.00 0.84 0.00 4.00
5390 5526 1.152777 TGACCCTTGCAACACCAGG 60.153 57.895 0.00 0.00 0.00 4.45
5391 5527 1.152756 GACCCTTGCAACACCAGGT 60.153 57.895 0.00 0.00 0.00 4.00
5392 5528 1.455383 GACCCTTGCAACACCAGGTG 61.455 60.000 18.93 18.93 39.75 4.00
5393 5529 2.202395 CCCTTGCAACACCAGGTGG 61.202 63.158 24.13 8.00 37.94 4.61
5395 5531 2.837291 TTGCAACACCAGGTGGCC 60.837 61.111 24.13 11.43 46.57 5.36
5396 5532 3.372422 TTGCAACACCAGGTGGCCT 62.372 57.895 24.13 4.91 46.57 5.19
5397 5533 2.000825 TTGCAACACCAGGTGGCCTA 62.001 55.000 24.13 6.60 46.57 3.93
5398 5534 1.228429 GCAACACCAGGTGGCCTAA 60.228 57.895 24.13 0.00 40.85 2.69
5399 5535 1.524008 GCAACACCAGGTGGCCTAAC 61.524 60.000 24.13 3.26 40.85 2.34
5400 5536 0.893727 CAACACCAGGTGGCCTAACC 60.894 60.000 24.13 3.70 37.94 2.85
5407 5543 1.222113 GGTGGCCTAACCTCTGAGC 59.778 63.158 3.32 0.00 40.22 4.26
5408 5544 1.553690 GGTGGCCTAACCTCTGAGCA 61.554 60.000 3.32 0.00 40.22 4.26
5409 5545 0.543749 GTGGCCTAACCTCTGAGCAT 59.456 55.000 3.32 0.00 40.22 3.79
5410 5546 0.833287 TGGCCTAACCTCTGAGCATC 59.167 55.000 3.32 0.00 40.22 3.91
5411 5547 0.249657 GGCCTAACCTCTGAGCATCG 60.250 60.000 0.00 0.00 33.89 3.84
5412 5548 0.878086 GCCTAACCTCTGAGCATCGC 60.878 60.000 0.00 0.00 38.61 4.58
5413 5549 0.596083 CCTAACCTCTGAGCATCGCG 60.596 60.000 0.00 0.00 38.61 5.87
5414 5550 1.211818 CTAACCTCTGAGCATCGCGC 61.212 60.000 0.00 0.00 38.61 6.86
5415 5551 2.629050 TAACCTCTGAGCATCGCGCC 62.629 60.000 0.00 0.00 44.04 6.53
5435 5571 2.831742 CCATCCGGCTTGCAGCAT 60.832 61.111 0.00 0.00 44.75 3.79
5436 5572 2.420568 CCATCCGGCTTGCAGCATT 61.421 57.895 0.00 0.00 44.75 3.56
5437 5573 1.065273 CATCCGGCTTGCAGCATTC 59.935 57.895 0.00 0.00 44.75 2.67
5438 5574 1.378911 ATCCGGCTTGCAGCATTCA 60.379 52.632 0.00 0.00 44.75 2.57
5439 5575 1.660560 ATCCGGCTTGCAGCATTCAC 61.661 55.000 0.00 0.00 44.75 3.18
5440 5576 2.202388 CGGCTTGCAGCATTCACG 60.202 61.111 0.00 0.00 44.75 4.35
5441 5577 2.505557 GGCTTGCAGCATTCACGC 60.506 61.111 0.00 0.00 44.75 5.34
5442 5578 2.872925 GCTTGCAGCATTCACGCG 60.873 61.111 3.53 3.53 41.89 6.01
5443 5579 2.202388 CTTGCAGCATTCACGCGG 60.202 61.111 12.47 0.00 36.85 6.46
5447 5583 4.465512 CAGCATTCACGCGGCCAC 62.466 66.667 12.47 0.00 36.85 5.01
5450 5586 3.803082 CATTCACGCGGCCACCAG 61.803 66.667 12.47 0.00 0.00 4.00
5451 5587 4.329545 ATTCACGCGGCCACCAGT 62.330 61.111 12.47 0.00 0.00 4.00
5452 5588 4.980805 TTCACGCGGCCACCAGTC 62.981 66.667 12.47 0.00 0.00 3.51
5461 5597 4.012895 CCACCAGTCGCGCAACAC 62.013 66.667 8.75 0.00 0.00 3.32
5462 5598 4.012895 CACCAGTCGCGCAACACC 62.013 66.667 8.75 0.00 0.00 4.16
5463 5599 4.539083 ACCAGTCGCGCAACACCA 62.539 61.111 8.75 0.00 0.00 4.17
5464 5600 4.012895 CCAGTCGCGCAACACCAC 62.013 66.667 8.75 0.00 0.00 4.16
5465 5601 3.268603 CAGTCGCGCAACACCACA 61.269 61.111 8.75 0.00 0.00 4.17
5466 5602 3.269347 AGTCGCGCAACACCACAC 61.269 61.111 8.75 0.00 0.00 3.82
5467 5603 4.643385 GTCGCGCAACACCACACG 62.643 66.667 8.75 0.00 0.00 4.49
5472 5608 4.605967 GCAACACCACACGGCGTG 62.606 66.667 35.89 35.89 45.92 5.34
5473 5609 4.605967 CAACACCACACGGCGTGC 62.606 66.667 37.21 0.00 44.91 5.34
5474 5610 4.849310 AACACCACACGGCGTGCT 62.849 61.111 37.21 22.41 44.91 4.40
5475 5611 4.849310 ACACCACACGGCGTGCTT 62.849 61.111 37.21 20.21 44.91 3.91
5476 5612 4.312231 CACCACACGGCGTGCTTG 62.312 66.667 37.21 27.92 44.91 4.01
5490 5626 4.077184 CTTGCGACACCGGCCCTA 62.077 66.667 0.00 0.00 36.06 3.53
5491 5627 4.077184 TTGCGACACCGGCCCTAG 62.077 66.667 0.00 0.00 36.06 3.02
5493 5629 3.537874 GCGACACCGGCCCTAGAT 61.538 66.667 0.00 0.00 36.06 1.98
5494 5630 2.728817 CGACACCGGCCCTAGATC 59.271 66.667 0.00 0.00 0.00 2.75
5495 5631 2.857744 CGACACCGGCCCTAGATCC 61.858 68.421 0.00 0.00 0.00 3.36
5496 5632 1.760875 GACACCGGCCCTAGATCCA 60.761 63.158 0.00 0.00 0.00 3.41
5497 5633 1.749334 GACACCGGCCCTAGATCCAG 61.749 65.000 0.00 0.00 0.00 3.86
5498 5634 1.762460 CACCGGCCCTAGATCCAGT 60.762 63.158 0.00 0.00 0.00 4.00
5499 5635 1.003051 ACCGGCCCTAGATCCAGTT 59.997 57.895 0.00 0.00 0.00 3.16
5500 5636 1.049289 ACCGGCCCTAGATCCAGTTC 61.049 60.000 0.00 0.00 0.00 3.01
5501 5637 0.760945 CCGGCCCTAGATCCAGTTCT 60.761 60.000 0.00 0.00 0.00 3.01
5502 5638 1.123928 CGGCCCTAGATCCAGTTCTT 58.876 55.000 0.00 0.00 0.00 2.52
5503 5639 1.069358 CGGCCCTAGATCCAGTTCTTC 59.931 57.143 0.00 0.00 0.00 2.87
5504 5640 2.403561 GGCCCTAGATCCAGTTCTTCT 58.596 52.381 0.00 0.00 0.00 2.85
5505 5641 2.103941 GGCCCTAGATCCAGTTCTTCTG 59.896 54.545 0.00 0.00 43.27 3.02
5506 5642 2.769095 GCCCTAGATCCAGTTCTTCTGT 59.231 50.000 0.00 0.00 42.19 3.41
5507 5643 3.198853 GCCCTAGATCCAGTTCTTCTGTT 59.801 47.826 0.00 0.00 42.19 3.16
5508 5644 4.764172 CCCTAGATCCAGTTCTTCTGTTG 58.236 47.826 0.00 0.00 42.19 3.33
5509 5645 4.467795 CCCTAGATCCAGTTCTTCTGTTGA 59.532 45.833 0.00 0.00 42.19 3.18
5510 5646 5.130145 CCCTAGATCCAGTTCTTCTGTTGAT 59.870 44.000 0.00 0.00 42.19 2.57
5511 5647 6.352565 CCCTAGATCCAGTTCTTCTGTTGATT 60.353 42.308 0.00 0.00 42.19 2.57
5512 5648 7.108847 CCTAGATCCAGTTCTTCTGTTGATTT 58.891 38.462 0.00 0.00 42.19 2.17
5513 5649 7.279758 CCTAGATCCAGTTCTTCTGTTGATTTC 59.720 40.741 0.00 0.00 42.19 2.17
5514 5650 6.777782 AGATCCAGTTCTTCTGTTGATTTCT 58.222 36.000 0.00 0.00 42.19 2.52
5515 5651 7.230027 AGATCCAGTTCTTCTGTTGATTTCTT 58.770 34.615 0.00 0.00 42.19 2.52
5516 5652 6.867662 TCCAGTTCTTCTGTTGATTTCTTC 57.132 37.500 0.00 0.00 42.19 2.87
5517 5653 5.765182 TCCAGTTCTTCTGTTGATTTCTTCC 59.235 40.000 0.00 0.00 42.19 3.46
5518 5654 5.532406 CCAGTTCTTCTGTTGATTTCTTCCA 59.468 40.000 0.00 0.00 42.19 3.53
5519 5655 6.208204 CCAGTTCTTCTGTTGATTTCTTCCAT 59.792 38.462 0.00 0.00 42.19 3.41
5520 5656 7.391554 CCAGTTCTTCTGTTGATTTCTTCCATA 59.608 37.037 0.00 0.00 42.19 2.74
5521 5657 8.786898 CAGTTCTTCTGTTGATTTCTTCCATAA 58.213 33.333 0.00 0.00 39.17 1.90
5522 5658 9.007901 AGTTCTTCTGTTGATTTCTTCCATAAG 57.992 33.333 0.00 0.00 0.00 1.73
5523 5659 7.383102 TCTTCTGTTGATTTCTTCCATAAGC 57.617 36.000 0.00 0.00 32.36 3.09
5524 5660 6.375455 TCTTCTGTTGATTTCTTCCATAAGCC 59.625 38.462 0.00 0.00 32.36 4.35
5525 5661 5.569355 TCTGTTGATTTCTTCCATAAGCCA 58.431 37.500 0.00 0.00 32.36 4.75
5526 5662 5.415701 TCTGTTGATTTCTTCCATAAGCCAC 59.584 40.000 0.00 0.00 32.36 5.01
5527 5663 5.324409 TGTTGATTTCTTCCATAAGCCACT 58.676 37.500 0.00 0.00 32.36 4.00
5528 5664 5.415701 TGTTGATTTCTTCCATAAGCCACTC 59.584 40.000 0.00 0.00 32.36 3.51
5529 5665 4.191544 TGATTTCTTCCATAAGCCACTCG 58.808 43.478 0.00 0.00 32.36 4.18
5530 5666 2.024176 TTCTTCCATAAGCCACTCGC 57.976 50.000 0.00 0.00 37.98 5.03
5531 5667 0.178068 TCTTCCATAAGCCACTCGCC 59.822 55.000 0.00 0.00 38.78 5.54
5532 5668 0.179000 CTTCCATAAGCCACTCGCCT 59.821 55.000 0.00 0.00 38.78 5.52
5533 5669 0.178068 TTCCATAAGCCACTCGCCTC 59.822 55.000 0.00 0.00 38.78 4.70
5534 5670 1.227674 CCATAAGCCACTCGCCTCC 60.228 63.158 0.00 0.00 38.78 4.30
5535 5671 1.690219 CCATAAGCCACTCGCCTCCT 61.690 60.000 0.00 0.00 38.78 3.69
5536 5672 0.249657 CATAAGCCACTCGCCTCCTC 60.250 60.000 0.00 0.00 38.78 3.71
5537 5673 1.403687 ATAAGCCACTCGCCTCCTCC 61.404 60.000 0.00 0.00 38.78 4.30
5540 5676 2.765807 CCACTCGCCTCCTCCCAT 60.766 66.667 0.00 0.00 0.00 4.00
5541 5677 2.370445 CCACTCGCCTCCTCCCATT 61.370 63.158 0.00 0.00 0.00 3.16
5542 5678 1.144936 CACTCGCCTCCTCCCATTC 59.855 63.158 0.00 0.00 0.00 2.67
5543 5679 2.066999 ACTCGCCTCCTCCCATTCC 61.067 63.158 0.00 0.00 0.00 3.01
5544 5680 2.040442 TCGCCTCCTCCCATTCCA 59.960 61.111 0.00 0.00 0.00 3.53
5545 5681 2.037620 CTCGCCTCCTCCCATTCCAG 62.038 65.000 0.00 0.00 0.00 3.86
5546 5682 2.066393 CGCCTCCTCCCATTCCAGA 61.066 63.158 0.00 0.00 0.00 3.86
5547 5683 1.626356 CGCCTCCTCCCATTCCAGAA 61.626 60.000 0.00 0.00 0.00 3.02
5548 5684 0.182299 GCCTCCTCCCATTCCAGAAG 59.818 60.000 0.00 0.00 0.00 2.85
5549 5685 0.182299 CCTCCTCCCATTCCAGAAGC 59.818 60.000 0.00 0.00 0.00 3.86
5550 5686 0.914644 CTCCTCCCATTCCAGAAGCA 59.085 55.000 0.00 0.00 0.00 3.91
5551 5687 0.620556 TCCTCCCATTCCAGAAGCAC 59.379 55.000 0.00 0.00 0.00 4.40
5552 5688 0.329261 CCTCCCATTCCAGAAGCACA 59.671 55.000 0.00 0.00 0.00 4.57
5553 5689 1.272092 CCTCCCATTCCAGAAGCACAA 60.272 52.381 0.00 0.00 0.00 3.33
5554 5690 1.815003 CTCCCATTCCAGAAGCACAAC 59.185 52.381 0.00 0.00 0.00 3.32
5555 5691 0.523072 CCCATTCCAGAAGCACAACG 59.477 55.000 0.00 0.00 0.00 4.10
5556 5692 1.238439 CCATTCCAGAAGCACAACGT 58.762 50.000 0.00 0.00 0.00 3.99
5557 5693 1.608590 CCATTCCAGAAGCACAACGTT 59.391 47.619 0.00 0.00 0.00 3.99
5558 5694 2.350772 CCATTCCAGAAGCACAACGTTC 60.351 50.000 0.00 0.00 0.00 3.95
5559 5695 1.305201 TTCCAGAAGCACAACGTTCC 58.695 50.000 0.00 0.00 0.00 3.62
5560 5696 0.534203 TCCAGAAGCACAACGTTCCC 60.534 55.000 0.00 0.00 0.00 3.97
5561 5697 0.535102 CCAGAAGCACAACGTTCCCT 60.535 55.000 0.00 0.00 0.00 4.20
5562 5698 0.588252 CAGAAGCACAACGTTCCCTG 59.412 55.000 0.00 0.00 0.00 4.45
5563 5699 0.180406 AGAAGCACAACGTTCCCTGT 59.820 50.000 0.00 0.00 0.00 4.00
5564 5700 1.021968 GAAGCACAACGTTCCCTGTT 58.978 50.000 0.00 0.00 0.00 3.16
5565 5701 1.002792 GAAGCACAACGTTCCCTGTTC 60.003 52.381 0.00 0.00 0.00 3.18
5566 5702 0.107410 AGCACAACGTTCCCTGTTCA 60.107 50.000 0.00 0.00 0.00 3.18
5567 5703 0.307760 GCACAACGTTCCCTGTTCAG 59.692 55.000 0.00 0.00 0.00 3.02
5568 5704 0.944386 CACAACGTTCCCTGTTCAGG 59.056 55.000 11.52 11.52 0.00 3.86
5576 5712 4.569214 CCTGTTCAGGGAGGAGGT 57.431 61.111 10.71 0.00 0.00 3.85
5577 5713 1.986413 CCTGTTCAGGGAGGAGGTG 59.014 63.158 10.71 0.00 0.00 4.00
5578 5714 0.545309 CCTGTTCAGGGAGGAGGTGA 60.545 60.000 10.71 0.00 0.00 4.02
5579 5715 0.610687 CTGTTCAGGGAGGAGGTGAC 59.389 60.000 0.00 0.00 0.00 3.67
5581 5717 1.353091 GTTCAGGGAGGAGGTGACTT 58.647 55.000 0.00 0.00 44.43 3.01
5582 5718 2.158219 TGTTCAGGGAGGAGGTGACTTA 60.158 50.000 0.00 0.00 44.43 2.24
5583 5719 2.233305 TCAGGGAGGAGGTGACTTAC 57.767 55.000 0.00 0.00 44.43 2.34
5584 5720 0.818296 CAGGGAGGAGGTGACTTACG 59.182 60.000 0.00 0.00 44.43 3.18
5585 5721 0.702902 AGGGAGGAGGTGACTTACGA 59.297 55.000 0.00 0.00 44.43 3.43
5586 5722 1.076677 AGGGAGGAGGTGACTTACGAA 59.923 52.381 0.00 0.00 44.43 3.85
5587 5723 1.897802 GGGAGGAGGTGACTTACGAAA 59.102 52.381 0.00 0.00 44.43 3.46
5588 5724 2.094130 GGGAGGAGGTGACTTACGAAAG 60.094 54.545 0.00 0.00 44.43 2.62
5590 5726 3.760684 GGAGGAGGTGACTTACGAAAGTA 59.239 47.826 0.00 0.00 46.09 2.24
5601 5737 2.403252 ACGAAAGTAGGCATTCAGGG 57.597 50.000 0.00 0.00 46.88 4.45
5602 5738 1.906574 ACGAAAGTAGGCATTCAGGGA 59.093 47.619 0.00 0.00 46.88 4.20
5603 5739 2.093447 ACGAAAGTAGGCATTCAGGGAG 60.093 50.000 0.00 0.00 46.88 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.137116 TGTGGCCACTAGATCATGTAAC 57.863 45.455 34.75 5.32 0.00 2.50
58 59 9.745880 CAATCTTACAGGAATACGTATAAGTGT 57.254 33.333 8.83 13.72 0.00 3.55
67 68 6.700520 GGGTAGAACAATCTTACAGGAATACG 59.299 42.308 0.00 0.00 37.10 3.06
72 73 4.469945 CCAGGGTAGAACAATCTTACAGGA 59.530 45.833 0.00 0.00 37.10 3.86
74 75 4.469945 TCCCAGGGTAGAACAATCTTACAG 59.530 45.833 5.01 0.00 37.10 2.74
78 79 3.777522 CTCTCCCAGGGTAGAACAATCTT 59.222 47.826 5.01 0.00 37.10 2.40
83 84 2.715763 AACTCTCCCAGGGTAGAACA 57.284 50.000 15.34 0.00 0.00 3.18
84 85 4.351127 TCTTAACTCTCCCAGGGTAGAAC 58.649 47.826 15.34 0.00 0.00 3.01
86 87 4.901785 ATCTTAACTCTCCCAGGGTAGA 57.098 45.455 15.34 11.25 0.00 2.59
87 88 5.189934 ACAAATCTTAACTCTCCCAGGGTAG 59.810 44.000 5.01 7.22 0.00 3.18
88 89 5.098663 ACAAATCTTAACTCTCCCAGGGTA 58.901 41.667 5.01 0.00 0.00 3.69
89 90 3.916989 ACAAATCTTAACTCTCCCAGGGT 59.083 43.478 5.01 0.00 0.00 4.34
90 91 4.576330 ACAAATCTTAACTCTCCCAGGG 57.424 45.455 0.00 0.00 0.00 4.45
93 94 9.807921 AAGAAAATACAAATCTTAACTCTCCCA 57.192 29.630 0.00 0.00 31.88 4.37
111 112 4.947388 CCCCCGAGATGAAACAAGAAAATA 59.053 41.667 0.00 0.00 0.00 1.40
177 178 8.997323 CAAGTTCATGAGCTTATTATCCTAAGG 58.003 37.037 22.44 4.36 30.55 2.69
195 196 1.630878 GGAGACCCAGACCAAGTTCAT 59.369 52.381 0.00 0.00 0.00 2.57
273 287 3.743521 GAGGCCTCCAAAAGCAATTTTT 58.256 40.909 23.19 0.00 39.55 1.94
343 383 9.806448 TGTGCCTCCATGTATATATGTATTTTT 57.194 29.630 8.46 0.00 0.00 1.94
345 385 9.979897 ATTGTGCCTCCATGTATATATGTATTT 57.020 29.630 8.46 0.00 0.00 1.40
348 388 7.917003 ACATTGTGCCTCCATGTATATATGTA 58.083 34.615 8.46 0.00 0.00 2.29
349 389 6.782986 ACATTGTGCCTCCATGTATATATGT 58.217 36.000 8.46 0.00 0.00 2.29
351 391 7.917003 TGTACATTGTGCCTCCATGTATATAT 58.083 34.615 0.00 0.00 31.50 0.86
352 392 7.309770 TGTACATTGTGCCTCCATGTATATA 57.690 36.000 0.00 0.00 31.50 0.86
353 393 6.186420 TGTACATTGTGCCTCCATGTATAT 57.814 37.500 0.00 0.00 31.50 0.86
354 394 5.622346 TGTACATTGTGCCTCCATGTATA 57.378 39.130 0.00 2.67 31.50 1.47
355 395 4.502105 TGTACATTGTGCCTCCATGTAT 57.498 40.909 0.00 0.00 31.50 2.29
356 396 3.990959 TGTACATTGTGCCTCCATGTA 57.009 42.857 0.00 0.00 0.00 2.29
357 397 2.877097 TGTACATTGTGCCTCCATGT 57.123 45.000 0.00 0.00 0.00 3.21
358 398 3.018856 ACATGTACATTGTGCCTCCATG 58.981 45.455 5.37 6.62 35.52 3.66
393 433 4.537015 CCTCATTTCAACGTGTTTCTTCC 58.463 43.478 0.00 0.00 0.00 3.46
400 440 2.357637 CACAACCCTCATTTCAACGTGT 59.642 45.455 0.00 0.00 0.00 4.49
451 491 7.609097 TTCTTGAGGATGAATAGTAGCATCT 57.391 36.000 12.78 3.26 40.49 2.90
452 492 8.845413 AATTCTTGAGGATGAATAGTAGCATC 57.155 34.615 7.08 7.08 40.05 3.91
453 493 9.064706 CAAATTCTTGAGGATGAATAGTAGCAT 57.935 33.333 0.00 0.00 34.14 3.79
454 494 8.049117 ACAAATTCTTGAGGATGAATAGTAGCA 58.951 33.333 0.00 0.00 36.33 3.49
455 495 8.443953 ACAAATTCTTGAGGATGAATAGTAGC 57.556 34.615 0.00 0.00 36.33 3.58
487 527 5.645929 ACCTTGAAATGCGATATGTACACAA 59.354 36.000 0.00 0.00 0.00 3.33
489 529 5.734855 ACCTTGAAATGCGATATGTACAC 57.265 39.130 0.00 0.00 0.00 2.90
609 649 5.235516 CAGGCTGCAGAATTTTTGAAAGAT 58.764 37.500 20.43 0.00 0.00 2.40
611 651 3.744426 CCAGGCTGCAGAATTTTTGAAAG 59.256 43.478 20.43 0.00 0.00 2.62
615 655 2.036217 TGACCAGGCTGCAGAATTTTTG 59.964 45.455 20.43 5.31 0.00 2.44
616 656 2.036346 GTGACCAGGCTGCAGAATTTTT 59.964 45.455 20.43 0.00 0.00 1.94
617 657 1.615392 GTGACCAGGCTGCAGAATTTT 59.385 47.619 20.43 0.00 0.00 1.82
621 661 1.993701 TTGGTGACCAGGCTGCAGAA 61.994 55.000 20.43 0.00 33.81 3.02
622 662 1.993701 TTTGGTGACCAGGCTGCAGA 61.994 55.000 20.43 0.00 33.81 4.26
708 751 2.807045 GTGACTGCTCACTCGCGG 60.807 66.667 6.13 0.00 43.26 6.46
720 763 0.815734 CGGTATTCCTCGTGGTGACT 59.184 55.000 2.99 0.00 34.23 3.41
1022 1072 2.610859 ATGGGGACGGAGCAGGTT 60.611 61.111 0.00 0.00 0.00 3.50
1076 1126 0.384974 GAGGATTCGCGCGAGTCTAG 60.385 60.000 40.89 12.21 32.45 2.43
1130 1180 0.394625 ACTCGCTACCAGTCTCTCCC 60.395 60.000 0.00 0.00 0.00 4.30
1207 1258 2.827322 CCATGGATGGCAGAAAAAGTCA 59.173 45.455 5.56 0.00 41.75 3.41
1221 1272 1.449601 GTTCACGGTCGCCATGGAT 60.450 57.895 18.40 0.00 0.00 3.41
1369 1420 2.885644 CAGATTGGCGACCGTCCG 60.886 66.667 0.00 0.00 0.00 4.79
1370 1421 3.195698 GCAGATTGGCGACCGTCC 61.196 66.667 0.00 0.00 0.00 4.79
1501 1556 2.746277 CGGAAGGCCACCTTTCCG 60.746 66.667 24.35 24.35 44.82 4.30
1517 1573 1.137086 ACTATCCTACAGCAGTTGCCG 59.863 52.381 0.00 0.00 43.38 5.69
1519 1575 3.118956 ACAGACTATCCTACAGCAGTTGC 60.119 47.826 0.00 0.00 42.49 4.17
1530 1586 7.348033 ACTAGTAACTAGCAACAGACTATCCT 58.652 38.462 0.00 0.00 37.57 3.24
1531 1587 7.571080 ACTAGTAACTAGCAACAGACTATCC 57.429 40.000 0.00 0.00 37.57 2.59
1540 1603 7.928103 TGCAGATACTACTAGTAACTAGCAAC 58.072 38.462 17.98 0.00 36.17 4.17
1541 1604 8.515695 TTGCAGATACTACTAGTAACTAGCAA 57.484 34.615 22.31 22.31 40.51 3.91
1568 1631 9.942850 TCTTCATCAACATGAATCTTTAGTGTA 57.057 29.630 0.00 0.00 46.01 2.90
1577 1640 9.414295 TCAAAACAATCTTCATCAACATGAATC 57.586 29.630 0.00 0.00 46.01 2.52
1584 1648 7.517259 GCCAACTTCAAAACAATCTTCATCAAC 60.517 37.037 0.00 0.00 0.00 3.18
1585 1649 6.479660 GCCAACTTCAAAACAATCTTCATCAA 59.520 34.615 0.00 0.00 0.00 2.57
1590 1654 4.606961 TCGCCAACTTCAAAACAATCTTC 58.393 39.130 0.00 0.00 0.00 2.87
1596 1661 4.748892 TCAAAATCGCCAACTTCAAAACA 58.251 34.783 0.00 0.00 0.00 2.83
1600 1665 5.193663 TGAATCAAAATCGCCAACTTCAA 57.806 34.783 0.00 0.00 0.00 2.69
1610 1675 7.427606 GCAATGTCTAGAACTGAATCAAAATCG 59.572 37.037 0.00 0.00 0.00 3.34
1626 1691 1.725641 TTCACGGCAGCAATGTCTAG 58.274 50.000 0.00 0.00 0.00 2.43
1662 1727 2.806244 CACAGAACAGGAGTTAAACCCG 59.194 50.000 0.00 0.00 38.30 5.28
1804 1870 2.233271 AGCCATTTGTGTCTTCACTGG 58.767 47.619 0.00 0.00 44.14 4.00
2091 2157 4.734398 ATAGCCTACATCATAGAGCAGC 57.266 45.455 0.00 0.00 0.00 5.25
2149 2215 1.136110 CCCTGGTCACCAAAACAACAC 59.864 52.381 0.00 0.00 30.80 3.32
2228 2294 2.194388 CTGCCTGTGGTGCATCCTCT 62.194 60.000 0.00 0.00 38.22 3.69
2419 2485 6.369890 TGAGAAGAGAACTAAATGTGCATGTC 59.630 38.462 0.00 0.00 0.00 3.06
2505 2574 5.617528 TGGGGCGAGATAAGTAAAATACA 57.382 39.130 0.00 0.00 0.00 2.29
2546 2615 1.872952 TGACTGACAAACCATGAAGCG 59.127 47.619 0.00 0.00 0.00 4.68
2626 2695 7.933033 AGAATGAAAATTCCAAGCTAGCAAAAA 59.067 29.630 18.83 5.92 0.00 1.94
2686 2759 3.673338 TCGCAGAAGACAACAAGATTACG 59.327 43.478 0.00 0.00 0.00 3.18
2706 2779 1.536766 TGCAAAAATCTCACTGGCTCG 59.463 47.619 0.00 0.00 0.00 5.03
2776 2849 8.286800 TGTTACGAGTCCAAACAAATCAATTAG 58.713 33.333 0.00 0.00 30.54 1.73
2865 2938 2.954318 CCTATGGCAAACTGCTATGCTT 59.046 45.455 7.65 0.00 44.46 3.91
2888 2961 2.223611 CAGTGAAGTGAGCAGAGCAAAG 59.776 50.000 0.00 0.00 0.00 2.77
2921 2994 3.571401 AGCAAGTCCTTCCAAAACAGATG 59.429 43.478 0.00 0.00 0.00 2.90
2997 3070 1.860950 CACGACCAGACTGACAAACTG 59.139 52.381 3.32 0.00 0.00 3.16
3138 3211 5.679734 AAATCATGTCTGAACTGTGTGAC 57.320 39.130 0.00 0.00 34.37 3.67
3146 3219 4.096833 TGGCTGCATAAATCATGTCTGAAC 59.903 41.667 0.50 0.00 36.95 3.18
3503 3594 2.041350 ACGTCTCCAGGGAGTTAAGAGA 59.959 50.000 14.70 0.00 42.49 3.10
3514 3605 2.680312 ATCAATCACACGTCTCCAGG 57.320 50.000 0.00 0.00 0.00 4.45
3669 3760 9.542462 CATTACTGTTAGTATTTAGGCAGCTTA 57.458 33.333 0.00 0.00 29.64 3.09
3825 3916 2.685850 ATCTAAACTACACGGTGGCC 57.314 50.000 13.48 0.00 0.00 5.36
3859 3950 6.611642 TGCTAAGAGATAACCCTTGTACATCT 59.388 38.462 0.00 0.00 32.12 2.90
3974 4066 8.375506 GGAGTACCACATAGGATAAATGATGAA 58.624 37.037 0.00 0.00 41.22 2.57
4128 4245 0.821711 AAACTGGGCGCACTAAGCAA 60.822 50.000 12.74 0.00 46.13 3.91
4136 4253 1.745232 CAGGTATAAAACTGGGCGCA 58.255 50.000 10.83 2.47 0.00 6.09
4193 4310 5.639506 ACTACAAACATCAGAGAACAATCCG 59.360 40.000 0.00 0.00 0.00 4.18
4231 4348 1.018226 CAGCAGGCTTCAGGAACTCG 61.018 60.000 0.00 0.00 34.60 4.18
4357 4474 2.745884 TCCTGAATTGCCGGTGCG 60.746 61.111 1.90 0.00 41.78 5.34
4360 4477 1.002134 CTGGTCCTGAATTGCCGGT 60.002 57.895 1.90 0.00 0.00 5.28
4430 4547 4.213482 GTCGATGATATTGGTAAAGGTGGC 59.787 45.833 0.00 0.00 0.00 5.01
4438 4555 3.316868 TGACAGCGTCGATGATATTGGTA 59.683 43.478 18.74 0.00 34.95 3.25
4448 4565 3.570926 TCTAAACTTGACAGCGTCGAT 57.429 42.857 0.00 0.00 34.95 3.59
4494 4611 9.847224 AGTTATTTGTTTCAATATAGGATCCGT 57.153 29.630 5.98 1.68 0.00 4.69
4556 4674 5.710099 ACAACCATCGGATTTACAAAGTCAT 59.290 36.000 0.00 0.00 0.00 3.06
4557 4675 5.067273 ACAACCATCGGATTTACAAAGTCA 58.933 37.500 0.00 0.00 0.00 3.41
4574 4692 5.240623 ACAAAATTCTGATAAGCGACAACCA 59.759 36.000 0.00 0.00 0.00 3.67
4609 4727 0.035458 ACGGACAAAGGAAGGAGCAG 59.965 55.000 0.00 0.00 0.00 4.24
4615 4733 3.664107 TGAAGATGACGGACAAAGGAAG 58.336 45.455 0.00 0.00 0.00 3.46
4645 4763 0.813821 TCACTCGCATCAGAGGACAG 59.186 55.000 0.00 0.00 42.31 3.51
4676 4794 2.337583 CCCATATTATCACTCGCACCG 58.662 52.381 0.00 0.00 0.00 4.94
4725 4861 2.008543 GCTGCATCGACAGATCCAACA 61.009 52.381 7.19 0.00 40.25 3.33
4726 4862 0.654683 GCTGCATCGACAGATCCAAC 59.345 55.000 7.19 0.00 40.25 3.77
4749 4885 2.263077 CAACGAGAGGAGAAATGACGG 58.737 52.381 0.00 0.00 0.00 4.79
4750 4886 1.656095 GCAACGAGAGGAGAAATGACG 59.344 52.381 0.00 0.00 0.00 4.35
4754 4890 1.002430 TGCTGCAACGAGAGGAGAAAT 59.998 47.619 0.00 0.00 0.00 2.17
4810 4946 1.682344 GGCACCCCTGATGAAACCC 60.682 63.158 0.00 0.00 0.00 4.11
4811 4947 2.046285 CGGCACCCCTGATGAAACC 61.046 63.158 0.00 0.00 0.00 3.27
4812 4948 0.893727 AACGGCACCCCTGATGAAAC 60.894 55.000 0.00 0.00 0.00 2.78
4813 4949 0.893270 CAACGGCACCCCTGATGAAA 60.893 55.000 0.00 0.00 0.00 2.69
4837 4973 1.660560 GCTGCTGCAATGGGTACCTG 61.661 60.000 12.72 3.31 44.92 4.00
4839 4975 3.200522 GCTGCTGCAATGGGTACC 58.799 61.111 11.11 2.17 44.90 3.34
4841 4977 0.961857 CACAGCTGCTGCAATGGGTA 60.962 55.000 28.39 0.00 42.74 3.69
4842 4978 2.116772 ACAGCTGCTGCAATGGGT 59.883 55.556 28.39 5.17 42.74 4.51
4864 5000 2.216750 GAGCGTTGTTGCATGGCCAT 62.217 55.000 14.09 14.09 37.31 4.40
4886 5022 0.960364 CACCCGGCAATGCTACAAGT 60.960 55.000 4.82 0.00 0.00 3.16
4887 5023 0.960364 ACACCCGGCAATGCTACAAG 60.960 55.000 4.82 0.00 0.00 3.16
4891 5027 1.872197 GCAAACACCCGGCAATGCTA 61.872 55.000 4.82 0.00 0.00 3.49
4896 5032 2.909965 GGAGCAAACACCCGGCAA 60.910 61.111 0.00 0.00 0.00 4.52
5243 5379 1.144936 GAGAAGGGGGCTCGTCATG 59.855 63.158 0.00 0.00 0.00 3.07
5244 5380 2.066999 GGAGAAGGGGGCTCGTCAT 61.067 63.158 0.00 0.00 33.19 3.06
5245 5381 2.683933 GGAGAAGGGGGCTCGTCA 60.684 66.667 0.00 0.00 33.19 4.35
5246 5382 3.471806 GGGAGAAGGGGGCTCGTC 61.472 72.222 0.00 0.00 33.19 4.20
5248 5384 3.390671 TAGGGGAGAAGGGGGCTCG 62.391 68.421 0.00 0.00 33.19 5.03
5249 5385 1.460497 CTAGGGGAGAAGGGGGCTC 60.460 68.421 0.00 0.00 0.00 4.70
5250 5386 2.706071 CTAGGGGAGAAGGGGGCT 59.294 66.667 0.00 0.00 0.00 5.19
5251 5387 3.172106 GCTAGGGGAGAAGGGGGC 61.172 72.222 0.00 0.00 0.00 5.80
5252 5388 2.073101 GTGCTAGGGGAGAAGGGGG 61.073 68.421 0.00 0.00 0.00 5.40
5253 5389 0.695803 ATGTGCTAGGGGAGAAGGGG 60.696 60.000 0.00 0.00 0.00 4.79
5254 5390 1.133976 CAATGTGCTAGGGGAGAAGGG 60.134 57.143 0.00 0.00 0.00 3.95
5255 5391 1.748591 GCAATGTGCTAGGGGAGAAGG 60.749 57.143 0.00 0.00 40.96 3.46
5256 5392 1.673168 GCAATGTGCTAGGGGAGAAG 58.327 55.000 0.00 0.00 40.96 2.85
5257 5393 3.882131 GCAATGTGCTAGGGGAGAA 57.118 52.632 0.00 0.00 40.96 2.87
5267 5403 0.522705 CGATGTGAGCAGCAATGTGC 60.523 55.000 0.00 0.00 45.46 4.57
5268 5404 0.522705 GCGATGTGAGCAGCAATGTG 60.523 55.000 0.00 0.00 34.19 3.21
5269 5405 1.651240 GGCGATGTGAGCAGCAATGT 61.651 55.000 0.00 0.00 36.08 2.71
5270 5406 1.063649 GGCGATGTGAGCAGCAATG 59.936 57.895 0.00 0.00 36.08 2.82
5271 5407 1.377594 TGGCGATGTGAGCAGCAAT 60.378 52.632 0.00 0.00 36.08 3.56
5272 5408 2.032376 TGGCGATGTGAGCAGCAA 59.968 55.556 0.00 0.00 36.08 3.91
5273 5409 2.743538 GTGGCGATGTGAGCAGCA 60.744 61.111 0.00 0.00 36.08 4.41
5274 5410 2.044832 GATGTGGCGATGTGAGCAGC 62.045 60.000 0.00 0.00 36.08 5.25
5275 5411 1.434622 GGATGTGGCGATGTGAGCAG 61.435 60.000 0.00 0.00 36.08 4.24
5276 5412 1.450134 GGATGTGGCGATGTGAGCA 60.450 57.895 0.00 0.00 36.08 4.26
5277 5413 1.153289 AGGATGTGGCGATGTGAGC 60.153 57.895 0.00 0.00 0.00 4.26
5278 5414 0.531532 GGAGGATGTGGCGATGTGAG 60.532 60.000 0.00 0.00 0.00 3.51
5279 5415 1.522092 GGAGGATGTGGCGATGTGA 59.478 57.895 0.00 0.00 0.00 3.58
5280 5416 1.884464 CGGAGGATGTGGCGATGTG 60.884 63.158 0.00 0.00 0.00 3.21
5281 5417 2.501128 CGGAGGATGTGGCGATGT 59.499 61.111 0.00 0.00 0.00 3.06
5282 5418 2.930385 AAGCGGAGGATGTGGCGATG 62.930 60.000 0.00 0.00 0.00 3.84
5283 5419 2.735772 AAGCGGAGGATGTGGCGAT 61.736 57.895 0.00 0.00 0.00 4.58
5284 5420 3.390521 AAGCGGAGGATGTGGCGA 61.391 61.111 0.00 0.00 0.00 5.54
5285 5421 3.197790 CAAGCGGAGGATGTGGCG 61.198 66.667 0.00 0.00 0.00 5.69
5286 5422 3.512516 GCAAGCGGAGGATGTGGC 61.513 66.667 0.00 0.00 0.00 5.01
5287 5423 1.033746 ATTGCAAGCGGAGGATGTGG 61.034 55.000 4.94 0.00 0.00 4.17
5288 5424 0.099968 CATTGCAAGCGGAGGATGTG 59.900 55.000 4.94 0.00 0.00 3.21
5289 5425 0.322816 ACATTGCAAGCGGAGGATGT 60.323 50.000 4.94 0.00 0.00 3.06
5290 5426 0.813184 AACATTGCAAGCGGAGGATG 59.187 50.000 4.94 0.00 0.00 3.51
5291 5427 0.813184 CAACATTGCAAGCGGAGGAT 59.187 50.000 4.94 0.00 0.00 3.24
5292 5428 0.250684 TCAACATTGCAAGCGGAGGA 60.251 50.000 4.94 0.00 0.00 3.71
5293 5429 0.813184 ATCAACATTGCAAGCGGAGG 59.187 50.000 4.94 0.00 0.00 4.30
5294 5430 1.468565 CCATCAACATTGCAAGCGGAG 60.469 52.381 4.94 0.00 0.00 4.63
5295 5431 0.527113 CCATCAACATTGCAAGCGGA 59.473 50.000 4.94 0.11 0.00 5.54
5296 5432 0.244450 ACCATCAACATTGCAAGCGG 59.756 50.000 4.94 0.00 0.00 5.52
5297 5433 1.068402 TGACCATCAACATTGCAAGCG 60.068 47.619 4.94 0.64 0.00 4.68
5298 5434 2.029649 AGTGACCATCAACATTGCAAGC 60.030 45.455 4.94 0.00 0.00 4.01
5299 5435 3.366679 GGAGTGACCATCAACATTGCAAG 60.367 47.826 4.94 0.00 38.79 4.01
5300 5436 2.557924 GGAGTGACCATCAACATTGCAA 59.442 45.455 0.00 0.00 38.79 4.08
5301 5437 2.161855 GGAGTGACCATCAACATTGCA 58.838 47.619 0.00 0.00 38.79 4.08
5302 5438 2.440409 AGGAGTGACCATCAACATTGC 58.560 47.619 0.00 0.00 42.04 3.56
5303 5439 5.707298 AGTAAAGGAGTGACCATCAACATTG 59.293 40.000 0.00 0.00 42.04 2.82
5304 5440 5.707298 CAGTAAAGGAGTGACCATCAACATT 59.293 40.000 0.00 0.00 42.04 2.71
5305 5441 5.248640 CAGTAAAGGAGTGACCATCAACAT 58.751 41.667 0.00 0.00 42.04 2.71
5306 5442 4.641396 CAGTAAAGGAGTGACCATCAACA 58.359 43.478 0.00 0.00 42.04 3.33
5307 5443 3.437049 GCAGTAAAGGAGTGACCATCAAC 59.563 47.826 0.00 0.00 42.04 3.18
5308 5444 3.327757 AGCAGTAAAGGAGTGACCATCAA 59.672 43.478 0.00 0.00 42.04 2.57
5309 5445 2.906389 AGCAGTAAAGGAGTGACCATCA 59.094 45.455 0.00 0.00 42.04 3.07
5310 5446 3.265791 CAGCAGTAAAGGAGTGACCATC 58.734 50.000 0.00 0.00 42.04 3.51
5311 5447 2.616510 GCAGCAGTAAAGGAGTGACCAT 60.617 50.000 0.00 0.00 42.04 3.55
5312 5448 1.270839 GCAGCAGTAAAGGAGTGACCA 60.271 52.381 0.00 0.00 42.04 4.02
5313 5449 1.270839 TGCAGCAGTAAAGGAGTGACC 60.271 52.381 0.00 0.00 39.35 4.02
5314 5450 2.072298 CTGCAGCAGTAAAGGAGTGAC 58.928 52.381 14.90 0.00 0.00 3.67
5315 5451 1.609061 GCTGCAGCAGTAAAGGAGTGA 60.609 52.381 33.36 0.00 41.59 3.41
5316 5452 0.801251 GCTGCAGCAGTAAAGGAGTG 59.199 55.000 33.36 0.00 41.59 3.51
5317 5453 3.239861 GCTGCAGCAGTAAAGGAGT 57.760 52.632 33.36 0.00 41.59 3.85
5332 5468 2.807045 GAGTGCTCGTCGGTGCTG 60.807 66.667 11.21 0.00 33.89 4.41
5333 5469 4.057428 GGAGTGCTCGTCGGTGCT 62.057 66.667 11.21 0.00 33.89 4.40
5335 5471 2.932234 AAGGGAGTGCTCGTCGGTG 61.932 63.158 0.00 0.00 0.00 4.94
5336 5472 2.600769 AAGGGAGTGCTCGTCGGT 60.601 61.111 0.00 0.00 0.00 4.69
5337 5473 2.125912 CAAGGGAGTGCTCGTCGG 60.126 66.667 0.00 0.00 0.00 4.79
5338 5474 2.811317 GCAAGGGAGTGCTCGTCG 60.811 66.667 0.00 0.00 41.51 5.12
5339 5475 1.739562 CTGCAAGGGAGTGCTCGTC 60.740 63.158 0.00 0.00 45.17 4.20
5340 5476 2.345244 CTGCAAGGGAGTGCTCGT 59.655 61.111 0.00 0.00 45.17 4.18
5341 5477 3.123620 GCTGCAAGGGAGTGCTCG 61.124 66.667 0.00 0.00 45.17 5.03
5342 5478 2.033141 TGCTGCAAGGGAGTGCTC 59.967 61.111 0.00 0.00 45.17 4.26
5343 5479 2.033757 CTGCTGCAAGGGAGTGCT 59.966 61.111 3.02 0.00 45.17 4.40
5344 5480 3.745803 GCTGCTGCAAGGGAGTGC 61.746 66.667 11.11 0.00 45.15 4.40
5345 5481 3.429141 CGCTGCTGCAAGGGAGTG 61.429 66.667 16.29 0.00 39.64 3.51
5366 5502 4.659172 TTGCAAGGGTCAGGGCCG 62.659 66.667 0.00 0.00 0.00 6.13
5367 5503 2.991540 GTTGCAAGGGTCAGGGCC 60.992 66.667 0.00 0.00 0.00 5.80
5368 5504 2.203480 TGTTGCAAGGGTCAGGGC 60.203 61.111 0.00 0.00 0.00 5.19
5369 5505 1.903404 GGTGTTGCAAGGGTCAGGG 60.903 63.158 0.00 0.00 0.00 4.45
5370 5506 1.152777 TGGTGTTGCAAGGGTCAGG 60.153 57.895 0.00 0.00 0.00 3.86
5371 5507 1.174712 CCTGGTGTTGCAAGGGTCAG 61.175 60.000 0.00 5.75 34.49 3.51
5372 5508 1.152777 CCTGGTGTTGCAAGGGTCA 60.153 57.895 0.00 0.00 34.49 4.02
5373 5509 1.152756 ACCTGGTGTTGCAAGGGTC 60.153 57.895 0.00 0.00 42.90 4.46
5374 5510 1.455587 CACCTGGTGTTGCAAGGGT 60.456 57.895 18.76 0.64 42.90 4.34
5375 5511 2.202395 CCACCTGGTGTTGCAAGGG 61.202 63.158 24.32 3.65 42.90 3.95
5376 5512 2.859981 GCCACCTGGTGTTGCAAGG 61.860 63.158 24.32 9.25 44.25 3.61
5377 5513 2.730094 GCCACCTGGTGTTGCAAG 59.270 61.111 24.32 9.80 37.57 4.01
5378 5514 2.000825 TAGGCCACCTGGTGTTGCAA 62.001 55.000 24.32 11.14 34.61 4.08
5379 5515 2.000825 TTAGGCCACCTGGTGTTGCA 62.001 55.000 24.32 5.22 34.61 4.08
5380 5516 1.228429 TTAGGCCACCTGGTGTTGC 60.228 57.895 24.32 20.27 34.61 4.17
5381 5517 0.893727 GGTTAGGCCACCTGGTGTTG 60.894 60.000 24.32 11.91 34.61 3.33
5382 5518 1.065997 AGGTTAGGCCACCTGGTGTT 61.066 55.000 24.32 12.49 46.22 3.32
5383 5519 1.463410 AGGTTAGGCCACCTGGTGT 60.463 57.895 24.32 9.68 46.22 4.16
5384 5520 3.495729 AGGTTAGGCCACCTGGTG 58.504 61.111 20.01 20.01 46.22 4.17
5389 5525 1.222113 GCTCAGAGGTTAGGCCACC 59.778 63.158 5.01 4.42 40.61 4.61
5390 5526 0.543749 ATGCTCAGAGGTTAGGCCAC 59.456 55.000 5.01 0.00 40.61 5.01
5391 5527 0.833287 GATGCTCAGAGGTTAGGCCA 59.167 55.000 5.01 0.00 40.61 5.36
5392 5528 0.249657 CGATGCTCAGAGGTTAGGCC 60.250 60.000 0.00 0.00 37.58 5.19
5393 5529 0.878086 GCGATGCTCAGAGGTTAGGC 60.878 60.000 0.00 0.00 0.00 3.93
5394 5530 0.596083 CGCGATGCTCAGAGGTTAGG 60.596 60.000 0.00 0.00 0.00 2.69
5395 5531 1.211818 GCGCGATGCTCAGAGGTTAG 61.212 60.000 12.10 0.00 41.73 2.34
5396 5532 1.226974 GCGCGATGCTCAGAGGTTA 60.227 57.895 12.10 0.00 41.73 2.85
5397 5533 2.510238 GCGCGATGCTCAGAGGTT 60.510 61.111 12.10 0.00 41.73 3.50
5398 5534 4.521062 GGCGCGATGCTCAGAGGT 62.521 66.667 12.10 0.00 45.43 3.85
5426 5562 2.202388 CCGCGTGAATGCTGCAAG 60.202 61.111 6.36 0.00 0.00 4.01
5427 5563 4.403137 GCCGCGTGAATGCTGCAA 62.403 61.111 6.36 0.00 43.52 4.08
5430 5566 4.465512 GTGGCCGCGTGAATGCTG 62.466 66.667 4.92 0.00 0.00 4.41
5433 5569 3.803082 CTGGTGGCCGCGTGAATG 61.803 66.667 10.86 0.00 0.00 2.67
5434 5570 4.329545 ACTGGTGGCCGCGTGAAT 62.330 61.111 10.86 0.00 0.00 2.57
5435 5571 4.980805 GACTGGTGGCCGCGTGAA 62.981 66.667 10.86 0.00 0.00 3.18
5444 5580 4.012895 GTGTTGCGCGACTGGTGG 62.013 66.667 27.33 0.00 0.00 4.61
5445 5581 4.012895 GGTGTTGCGCGACTGGTG 62.013 66.667 27.33 0.00 0.00 4.17
5446 5582 4.539083 TGGTGTTGCGCGACTGGT 62.539 61.111 27.33 0.00 0.00 4.00
5447 5583 4.012895 GTGGTGTTGCGCGACTGG 62.013 66.667 27.33 0.00 0.00 4.00
5448 5584 3.268603 TGTGGTGTTGCGCGACTG 61.269 61.111 27.33 0.00 0.00 3.51
5449 5585 3.269347 GTGTGGTGTTGCGCGACT 61.269 61.111 27.33 0.00 0.00 4.18
5450 5586 4.643385 CGTGTGGTGTTGCGCGAC 62.643 66.667 21.27 21.27 40.54 5.19
5473 5609 4.077184 TAGGGCCGGTGTCGCAAG 62.077 66.667 1.90 0.00 34.56 4.01
5474 5610 4.077184 CTAGGGCCGGTGTCGCAA 62.077 66.667 1.90 0.00 34.56 4.85
5476 5612 3.501458 GATCTAGGGCCGGTGTCGC 62.501 68.421 1.90 0.00 34.56 5.19
5477 5613 2.728817 GATCTAGGGCCGGTGTCG 59.271 66.667 1.90 0.00 0.00 4.35
5478 5614 1.749334 CTGGATCTAGGGCCGGTGTC 61.749 65.000 1.90 0.00 0.00 3.67
5479 5615 1.762460 CTGGATCTAGGGCCGGTGT 60.762 63.158 1.90 0.00 0.00 4.16
5480 5616 1.338136 AACTGGATCTAGGGCCGGTG 61.338 60.000 11.17 0.00 42.81 4.94
5481 5617 1.003051 AACTGGATCTAGGGCCGGT 59.997 57.895 11.17 9.63 45.47 5.28
5482 5618 0.760945 AGAACTGGATCTAGGGCCGG 60.761 60.000 11.17 0.00 36.60 6.13
5483 5619 1.069358 GAAGAACTGGATCTAGGGCCG 59.931 57.143 11.17 0.00 0.00 6.13
5484 5620 2.103941 CAGAAGAACTGGATCTAGGGCC 59.896 54.545 11.17 0.00 42.39 5.80
5485 5621 3.467374 CAGAAGAACTGGATCTAGGGC 57.533 52.381 11.17 1.88 42.39 5.19
5496 5632 8.924511 TTATGGAAGAAATCAACAGAAGAACT 57.075 30.769 0.00 0.00 0.00 3.01
5497 5633 7.752686 GCTTATGGAAGAAATCAACAGAAGAAC 59.247 37.037 0.00 0.00 33.54 3.01
5498 5634 7.094205 GGCTTATGGAAGAAATCAACAGAAGAA 60.094 37.037 0.00 0.00 33.54 2.52
5499 5635 6.375455 GGCTTATGGAAGAAATCAACAGAAGA 59.625 38.462 0.00 0.00 33.54 2.87
5500 5636 6.151648 TGGCTTATGGAAGAAATCAACAGAAG 59.848 38.462 0.00 0.00 34.25 2.85
5501 5637 6.009589 TGGCTTATGGAAGAAATCAACAGAA 58.990 36.000 0.00 0.00 34.25 3.02
5502 5638 5.415701 GTGGCTTATGGAAGAAATCAACAGA 59.584 40.000 0.00 0.00 34.25 3.41
5503 5639 5.416952 AGTGGCTTATGGAAGAAATCAACAG 59.583 40.000 0.00 0.00 34.25 3.16
5504 5640 5.324409 AGTGGCTTATGGAAGAAATCAACA 58.676 37.500 0.00 0.00 34.25 3.33
5505 5641 5.447818 CGAGTGGCTTATGGAAGAAATCAAC 60.448 44.000 0.00 0.00 34.25 3.18
5506 5642 4.635765 CGAGTGGCTTATGGAAGAAATCAA 59.364 41.667 0.00 0.00 34.25 2.57
5507 5643 4.191544 CGAGTGGCTTATGGAAGAAATCA 58.808 43.478 0.00 0.00 34.25 2.57
5508 5644 3.002759 GCGAGTGGCTTATGGAAGAAATC 59.997 47.826 0.00 0.00 39.11 2.17
5509 5645 2.945668 GCGAGTGGCTTATGGAAGAAAT 59.054 45.455 0.00 0.00 39.11 2.17
5510 5646 2.356135 GCGAGTGGCTTATGGAAGAAA 58.644 47.619 0.00 0.00 39.11 2.52
5511 5647 1.406887 GGCGAGTGGCTTATGGAAGAA 60.407 52.381 0.00 0.00 42.94 2.52
5512 5648 0.178068 GGCGAGTGGCTTATGGAAGA 59.822 55.000 0.00 0.00 42.94 2.87
5513 5649 2.695314 GGCGAGTGGCTTATGGAAG 58.305 57.895 0.00 0.00 42.94 3.46
5514 5650 4.954933 GGCGAGTGGCTTATGGAA 57.045 55.556 0.00 0.00 42.94 3.53
5523 5659 2.317149 GAATGGGAGGAGGCGAGTGG 62.317 65.000 0.00 0.00 0.00 4.00
5524 5660 1.144936 GAATGGGAGGAGGCGAGTG 59.855 63.158 0.00 0.00 0.00 3.51
5525 5661 2.066999 GGAATGGGAGGAGGCGAGT 61.067 63.158 0.00 0.00 0.00 4.18
5526 5662 2.037620 CTGGAATGGGAGGAGGCGAG 62.038 65.000 0.00 0.00 0.00 5.03
5527 5663 2.040442 TGGAATGGGAGGAGGCGA 59.960 61.111 0.00 0.00 0.00 5.54
5528 5664 1.626356 TTCTGGAATGGGAGGAGGCG 61.626 60.000 0.00 0.00 0.00 5.52
5529 5665 0.182299 CTTCTGGAATGGGAGGAGGC 59.818 60.000 0.00 0.00 0.00 4.70
5530 5666 0.182299 GCTTCTGGAATGGGAGGAGG 59.818 60.000 0.00 0.00 0.00 4.30
5531 5667 0.914644 TGCTTCTGGAATGGGAGGAG 59.085 55.000 0.00 0.00 0.00 3.69
5532 5668 0.620556 GTGCTTCTGGAATGGGAGGA 59.379 55.000 0.00 0.00 0.00 3.71
5533 5669 0.329261 TGTGCTTCTGGAATGGGAGG 59.671 55.000 0.00 0.00 0.00 4.30
5534 5670 1.815003 GTTGTGCTTCTGGAATGGGAG 59.185 52.381 0.00 0.00 0.00 4.30
5535 5671 1.881925 CGTTGTGCTTCTGGAATGGGA 60.882 52.381 0.00 0.00 0.00 4.37
5536 5672 0.523072 CGTTGTGCTTCTGGAATGGG 59.477 55.000 0.00 0.00 0.00 4.00
5537 5673 1.238439 ACGTTGTGCTTCTGGAATGG 58.762 50.000 0.00 0.00 0.00 3.16
5538 5674 2.350772 GGAACGTTGTGCTTCTGGAATG 60.351 50.000 5.00 0.00 0.00 2.67
5539 5675 1.880027 GGAACGTTGTGCTTCTGGAAT 59.120 47.619 5.00 0.00 0.00 3.01
5540 5676 1.305201 GGAACGTTGTGCTTCTGGAA 58.695 50.000 5.00 0.00 0.00 3.53
5541 5677 0.534203 GGGAACGTTGTGCTTCTGGA 60.534 55.000 5.00 0.00 0.00 3.86
5542 5678 0.535102 AGGGAACGTTGTGCTTCTGG 60.535 55.000 5.00 0.00 0.00 3.86
5543 5679 0.588252 CAGGGAACGTTGTGCTTCTG 59.412 55.000 5.00 0.33 0.00 3.02
5544 5680 0.180406 ACAGGGAACGTTGTGCTTCT 59.820 50.000 5.00 0.00 0.00 2.85
5545 5681 1.002792 GAACAGGGAACGTTGTGCTTC 60.003 52.381 5.00 4.02 0.00 3.86
5546 5682 1.021968 GAACAGGGAACGTTGTGCTT 58.978 50.000 5.00 0.00 0.00 3.91
5547 5683 0.107410 TGAACAGGGAACGTTGTGCT 60.107 50.000 5.00 0.00 0.00 4.40
5548 5684 0.307760 CTGAACAGGGAACGTTGTGC 59.692 55.000 5.00 0.00 0.00 4.57
5549 5685 0.944386 CCTGAACAGGGAACGTTGTG 59.056 55.000 5.00 2.66 44.87 3.33
5550 5686 3.396951 CCTGAACAGGGAACGTTGT 57.603 52.632 5.00 0.00 44.87 3.32
5560 5696 0.610687 GTCACCTCCTCCCTGAACAG 59.389 60.000 0.00 0.00 0.00 3.16
5561 5697 0.191064 AGTCACCTCCTCCCTGAACA 59.809 55.000 0.00 0.00 0.00 3.18
5562 5698 1.353091 AAGTCACCTCCTCCCTGAAC 58.647 55.000 0.00 0.00 0.00 3.18
5563 5699 2.537143 GTAAGTCACCTCCTCCCTGAA 58.463 52.381 0.00 0.00 0.00 3.02
5564 5700 1.616187 CGTAAGTCACCTCCTCCCTGA 60.616 57.143 0.00 0.00 0.00 3.86
5565 5701 0.818296 CGTAAGTCACCTCCTCCCTG 59.182 60.000 0.00 0.00 0.00 4.45
5566 5702 0.702902 TCGTAAGTCACCTCCTCCCT 59.297 55.000 0.00 0.00 39.48 4.20
5567 5703 1.553706 TTCGTAAGTCACCTCCTCCC 58.446 55.000 0.00 0.00 39.48 4.30
5568 5704 2.561858 ACTTTCGTAAGTCACCTCCTCC 59.438 50.000 1.05 0.00 40.60 4.30
5569 5705 3.938289 ACTTTCGTAAGTCACCTCCTC 57.062 47.619 1.05 0.00 40.60 3.71
5570 5706 3.762823 CCTACTTTCGTAAGTCACCTCCT 59.237 47.826 10.95 0.00 43.45 3.69
5571 5707 3.675502 GCCTACTTTCGTAAGTCACCTCC 60.676 52.174 10.95 0.00 43.45 4.30
5572 5708 3.057033 TGCCTACTTTCGTAAGTCACCTC 60.057 47.826 10.95 0.00 43.45 3.85
5573 5709 2.895404 TGCCTACTTTCGTAAGTCACCT 59.105 45.455 10.95 0.00 43.45 4.00
5574 5710 3.308438 TGCCTACTTTCGTAAGTCACC 57.692 47.619 10.95 1.87 43.45 4.02
5575 5711 4.927425 TGAATGCCTACTTTCGTAAGTCAC 59.073 41.667 10.95 3.19 43.45 3.67
5576 5712 5.142061 TGAATGCCTACTTTCGTAAGTCA 57.858 39.130 10.95 4.15 43.45 3.41
5577 5713 4.567159 CCTGAATGCCTACTTTCGTAAGTC 59.433 45.833 10.95 0.00 43.45 3.01
5578 5714 4.504858 CCTGAATGCCTACTTTCGTAAGT 58.495 43.478 12.28 12.28 46.18 2.24
5579 5715 3.871594 CCCTGAATGCCTACTTTCGTAAG 59.128 47.826 0.00 0.00 37.40 2.34
5580 5716 3.516300 TCCCTGAATGCCTACTTTCGTAA 59.484 43.478 0.00 0.00 33.69 3.18
5581 5717 3.101437 TCCCTGAATGCCTACTTTCGTA 58.899 45.455 0.00 0.00 33.69 3.43
5582 5718 1.906574 TCCCTGAATGCCTACTTTCGT 59.093 47.619 0.00 0.00 33.69 3.85
5583 5719 2.555199 CTCCCTGAATGCCTACTTTCG 58.445 52.381 0.00 0.00 33.69 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.