Multiple sequence alignment - TraesCS1D01G355500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G355500 chr1D 100.000 3554 0 0 1 3554 440047844 440044291 0.000000e+00 6564.0
1 TraesCS1D01G355500 chr1A 95.922 1643 62 3 962 2599 537824117 537825759 0.000000e+00 2658.0
2 TraesCS1D01G355500 chr1A 86.829 410 18 5 275 663 537822866 537823260 3.280000e-115 425.0
3 TraesCS1D01G355500 chr1A 88.502 287 23 3 651 937 537823848 537824124 4.390000e-89 339.0
4 TraesCS1D01G355500 chr1A 91.855 221 16 2 2728 2947 537826017 537826236 1.240000e-79 307.0
5 TraesCS1D01G355500 chr1A 89.928 139 7 2 2598 2729 537825838 537825976 4.720000e-39 172.0
6 TraesCS1D01G355500 chr1A 95.775 71 3 0 3442 3512 537826763 537826833 8.060000e-22 115.0
7 TraesCS1D01G355500 chr1B 94.054 1766 76 16 993 2729 597555115 597553350 0.000000e+00 2652.0
8 TraesCS1D01G355500 chr1B 90.378 291 26 2 2728 3018 597553309 597553021 7.200000e-102 381.0
9 TraesCS1D01G355500 chr4D 95.588 272 12 0 12 283 15611689 15611418 1.510000e-118 436.0
10 TraesCS1D01G355500 chr4D 95.880 267 11 0 11 277 20999728 20999994 1.960000e-117 433.0
11 TraesCS1D01G355500 chr4D 78.788 495 86 16 3023 3505 291965432 291964945 7.410000e-82 315.0
12 TraesCS1D01G355500 chr4B 96.255 267 9 1 13 279 555841931 555842196 1.510000e-118 436.0
13 TraesCS1D01G355500 chr4B 95.849 265 11 0 13 277 561248078 561247814 2.540000e-116 429.0
14 TraesCS1D01G355500 chr4B 78.454 427 78 13 3043 3461 416211636 416212056 2.100000e-67 267.0
15 TraesCS1D01G355500 chr3A 95.911 269 11 0 9 277 214725663 214725931 1.510000e-118 436.0
16 TraesCS1D01G355500 chr3A 96.226 265 9 1 14 277 682780092 682780356 1.960000e-117 433.0
17 TraesCS1D01G355500 chr2B 95.588 272 12 0 13 284 280239338 280239067 1.510000e-118 436.0
18 TraesCS1D01G355500 chr7A 95.896 268 11 0 10 277 15282640 15282907 5.450000e-118 435.0
19 TraesCS1D01G355500 chr7A 75.723 519 108 16 3017 3522 489357700 489358213 9.860000e-61 244.0
20 TraesCS1D01G355500 chr7A 75.654 497 97 21 3019 3500 217502825 217503312 3.570000e-55 226.0
21 TraesCS1D01G355500 chr3D 95.506 267 12 0 13 279 303360571 303360305 9.120000e-116 427.0
22 TraesCS1D01G355500 chr3D 78.251 423 82 8 3047 3461 388522452 388522032 2.720000e-66 263.0
23 TraesCS1D01G355500 chr4A 78.643 501 87 17 3023 3511 211391517 211391025 7.410000e-82 315.0
24 TraesCS1D01G355500 chr5B 76.829 492 86 19 3019 3500 128458375 128458848 5.890000e-63 252.0
25 TraesCS1D01G355500 chr5B 79.496 278 45 12 3019 3288 586192380 586192107 1.680000e-43 187.0
26 TraesCS1D01G355500 chr5B 97.368 38 0 1 3421 3457 676265622 676265585 2.960000e-06 63.9
27 TraesCS1D01G355500 chr3B 75.223 448 96 15 3019 3456 604279778 604280220 7.780000e-47 198.0
28 TraesCS1D01G355500 chr6A 82.707 133 17 5 2888 3018 502656282 502656410 2.900000e-21 113.0
29 TraesCS1D01G355500 chr7D 92.500 40 3 0 1690 1729 11429646 11429607 1.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G355500 chr1D 440044291 440047844 3553 True 6564.000000 6564 100.0000 1 3554 1 chr1D.!!$R1 3553
1 TraesCS1D01G355500 chr1A 537822866 537826833 3967 False 669.333333 2658 91.4685 275 3512 6 chr1A.!!$F1 3237
2 TraesCS1D01G355500 chr1B 597553021 597555115 2094 True 1516.500000 2652 92.2160 993 3018 2 chr1B.!!$R1 2025
3 TraesCS1D01G355500 chr7A 489357700 489358213 513 False 244.000000 244 75.7230 3017 3522 1 chr7A.!!$F3 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
212 213 0.179225 CGAGTGGTGCAACGCAATAC 60.179 55.000 19.16 0.00 41.47 1.89 F
217 218 0.240945 GGTGCAACGCAATACAGCTT 59.759 50.000 0.00 0.00 41.47 3.74 F
319 320 1.130561 CTAAAGCCGGCCTCTTTTTCG 59.869 52.381 26.15 9.04 35.58 3.46 F
712 1334 2.256306 TGAGTCAGTTCATACCCTGCA 58.744 47.619 0.00 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1205 1830 1.007038 TTGTAAAGAGCGGCGTCGT 60.007 52.632 12.58 0.0 38.89 4.34 R
1613 2241 1.071019 CATCGAGTTCCACGACACGG 61.071 60.000 0.00 0.0 42.37 4.94 R
2064 2692 1.446099 GGTGAAGATGACGAGCGCA 60.446 57.895 11.47 0.0 0.00 6.09 R
2576 3212 0.249073 CCGGATAAGTCAGTCAGCGG 60.249 60.000 0.00 0.0 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.514330 TGCTTTAATTTTATACTCCATCCGTT 57.486 30.769 0.00 0.00 0.00 4.44
26 27 8.617809 TGCTTTAATTTTATACTCCATCCGTTC 58.382 33.333 0.00 0.00 0.00 3.95
27 28 8.074370 GCTTTAATTTTATACTCCATCCGTTCC 58.926 37.037 0.00 0.00 0.00 3.62
28 29 9.338622 CTTTAATTTTATACTCCATCCGTTCCT 57.661 33.333 0.00 0.00 0.00 3.36
30 31 9.991906 TTAATTTTATACTCCATCCGTTCCTAG 57.008 33.333 0.00 0.00 0.00 3.02
31 32 7.850935 ATTTTATACTCCATCCGTTCCTAGA 57.149 36.000 0.00 0.00 0.00 2.43
32 33 7.850935 TTTTATACTCCATCCGTTCCTAGAT 57.149 36.000 0.00 0.00 0.00 1.98
33 34 8.945195 TTTTATACTCCATCCGTTCCTAGATA 57.055 34.615 0.00 0.00 0.00 1.98
34 35 9.543231 TTTTATACTCCATCCGTTCCTAGATAT 57.457 33.333 0.00 0.00 0.00 1.63
36 37 9.848710 TTATACTCCATCCGTTCCTAGATATAG 57.151 37.037 0.00 0.00 0.00 1.31
37 38 5.511363 ACTCCATCCGTTCCTAGATATAGG 58.489 45.833 7.11 7.11 38.58 2.57
38 39 5.253330 ACTCCATCCGTTCCTAGATATAGGA 59.747 44.000 12.21 12.21 44.04 2.94
39 40 6.068735 ACTCCATCCGTTCCTAGATATAGGAT 60.069 42.308 16.74 0.00 44.98 3.24
43 44 8.698973 CATCCGTTCCTAGATATAGGATGTAT 57.301 38.462 16.74 6.18 44.98 2.29
44 45 9.794719 CATCCGTTCCTAGATATAGGATGTATA 57.205 37.037 16.74 0.00 44.98 1.47
46 47 9.000978 TCCGTTCCTAGATATAGGATGTATAGT 57.999 37.037 16.74 0.00 44.98 2.12
47 48 9.629878 CCGTTCCTAGATATAGGATGTATAGTT 57.370 37.037 16.74 0.00 44.98 2.24
55 56 9.726438 AGATATAGGATGTATAGTTTTTGGCAC 57.274 33.333 0.00 0.00 0.00 5.01
56 57 6.861065 ATAGGATGTATAGTTTTTGGCACG 57.139 37.500 0.00 0.00 0.00 5.34
57 58 3.945285 AGGATGTATAGTTTTTGGCACGG 59.055 43.478 0.00 0.00 0.00 4.94
58 59 3.942748 GGATGTATAGTTTTTGGCACGGA 59.057 43.478 0.00 0.00 0.00 4.69
59 60 4.396790 GGATGTATAGTTTTTGGCACGGAA 59.603 41.667 0.00 0.00 0.00 4.30
60 61 5.106078 GGATGTATAGTTTTTGGCACGGAAA 60.106 40.000 0.00 0.00 0.00 3.13
61 62 5.968528 TGTATAGTTTTTGGCACGGAAAT 57.031 34.783 0.00 0.00 0.00 2.17
62 63 6.334102 TGTATAGTTTTTGGCACGGAAATT 57.666 33.333 0.00 0.00 0.00 1.82
63 64 7.450124 TGTATAGTTTTTGGCACGGAAATTA 57.550 32.000 0.00 0.00 0.00 1.40
64 65 7.883217 TGTATAGTTTTTGGCACGGAAATTAA 58.117 30.769 0.00 0.00 0.00 1.40
65 66 8.358148 TGTATAGTTTTTGGCACGGAAATTAAA 58.642 29.630 0.00 0.00 0.00 1.52
66 67 7.883229 ATAGTTTTTGGCACGGAAATTAAAG 57.117 32.000 0.00 0.00 0.00 1.85
67 68 5.908341 AGTTTTTGGCACGGAAATTAAAGA 58.092 33.333 0.00 0.00 0.00 2.52
68 69 6.342111 AGTTTTTGGCACGGAAATTAAAGAA 58.658 32.000 0.00 0.00 0.00 2.52
69 70 6.256975 AGTTTTTGGCACGGAAATTAAAGAAC 59.743 34.615 0.00 0.00 0.00 3.01
70 71 3.546002 TGGCACGGAAATTAAAGAACG 57.454 42.857 0.00 0.00 0.00 3.95
71 72 2.247637 GGCACGGAAATTAAAGAACGC 58.752 47.619 0.00 0.00 0.00 4.84
72 73 2.350964 GGCACGGAAATTAAAGAACGCA 60.351 45.455 0.00 0.00 0.00 5.24
73 74 2.655001 GCACGGAAATTAAAGAACGCAC 59.345 45.455 0.00 0.00 0.00 5.34
74 75 2.900046 CACGGAAATTAAAGAACGCACG 59.100 45.455 0.00 0.00 0.00 5.34
75 76 2.545106 ACGGAAATTAAAGAACGCACGT 59.455 40.909 0.00 0.00 0.00 4.49
76 77 2.900046 CGGAAATTAAAGAACGCACGTG 59.100 45.455 12.28 12.28 0.00 4.49
77 78 3.231160 GGAAATTAAAGAACGCACGTGG 58.769 45.455 18.88 10.05 0.00 4.94
78 79 3.058777 GGAAATTAAAGAACGCACGTGGA 60.059 43.478 18.88 0.00 0.00 4.02
79 80 3.806316 AATTAAAGAACGCACGTGGAG 57.194 42.857 18.88 2.38 0.00 3.86
80 81 1.504359 TTAAAGAACGCACGTGGAGG 58.496 50.000 18.88 0.00 0.00 4.30
81 82 0.320073 TAAAGAACGCACGTGGAGGG 60.320 55.000 18.88 1.91 0.00 4.30
82 83 2.035237 AAAGAACGCACGTGGAGGGA 62.035 55.000 18.88 0.00 0.00 4.20
83 84 2.029964 GAACGCACGTGGAGGGAA 59.970 61.111 18.88 0.00 0.00 3.97
84 85 1.595929 GAACGCACGTGGAGGGAAA 60.596 57.895 18.88 0.00 0.00 3.13
85 86 1.153127 AACGCACGTGGAGGGAAAA 60.153 52.632 18.88 0.00 0.00 2.29
86 87 0.536460 AACGCACGTGGAGGGAAAAT 60.536 50.000 18.88 0.00 0.00 1.82
87 88 0.536460 ACGCACGTGGAGGGAAAATT 60.536 50.000 18.88 0.00 0.00 1.82
88 89 0.596082 CGCACGTGGAGGGAAAATTT 59.404 50.000 18.88 0.00 0.00 1.82
89 90 1.401018 CGCACGTGGAGGGAAAATTTC 60.401 52.381 18.88 0.00 0.00 2.17
90 91 1.611491 GCACGTGGAGGGAAAATTTCA 59.389 47.619 18.88 0.00 0.00 2.69
91 92 2.607038 GCACGTGGAGGGAAAATTTCAC 60.607 50.000 18.88 3.68 0.00 3.18
92 93 2.621055 CACGTGGAGGGAAAATTTCACA 59.379 45.455 10.88 0.00 34.83 3.58
93 94 3.067461 CACGTGGAGGGAAAATTTCACAA 59.933 43.478 10.88 0.00 34.83 3.33
94 95 3.317993 ACGTGGAGGGAAAATTTCACAAG 59.682 43.478 10.88 6.95 34.83 3.16
95 96 3.317993 CGTGGAGGGAAAATTTCACAAGT 59.682 43.478 10.88 0.00 34.83 3.16
96 97 4.202111 CGTGGAGGGAAAATTTCACAAGTT 60.202 41.667 10.88 0.00 34.83 2.66
97 98 5.670485 GTGGAGGGAAAATTTCACAAGTTT 58.330 37.500 10.88 0.00 34.83 2.66
98 99 6.112734 GTGGAGGGAAAATTTCACAAGTTTT 58.887 36.000 10.88 0.00 34.83 2.43
99 100 6.037062 GTGGAGGGAAAATTTCACAAGTTTTG 59.963 38.462 10.88 0.00 34.83 2.44
100 101 6.070538 TGGAGGGAAAATTTCACAAGTTTTGA 60.071 34.615 10.88 0.00 34.83 2.69
101 102 6.479990 GGAGGGAAAATTTCACAAGTTTTGAG 59.520 38.462 10.88 0.00 34.83 3.02
102 103 6.946340 AGGGAAAATTTCACAAGTTTTGAGT 58.054 32.000 10.88 0.00 34.83 3.41
103 104 6.818142 AGGGAAAATTTCACAAGTTTTGAGTG 59.182 34.615 10.88 0.00 34.83 3.51
104 105 6.816140 GGGAAAATTTCACAAGTTTTGAGTGA 59.184 34.615 8.09 0.00 40.24 3.41
105 106 7.010460 GGGAAAATTTCACAAGTTTTGAGTGAG 59.990 37.037 8.09 0.00 42.54 3.51
106 107 7.759433 GGAAAATTTCACAAGTTTTGAGTGAGA 59.241 33.333 8.09 0.00 42.54 3.27
107 108 9.305925 GAAAATTTCACAAGTTTTGAGTGAGAT 57.694 29.630 0.11 0.00 42.54 2.75
108 109 9.657419 AAAATTTCACAAGTTTTGAGTGAGATT 57.343 25.926 0.00 0.00 44.15 2.40
110 111 9.956720 AATTTCACAAGTTTTGAGTGAGATTAG 57.043 29.630 8.27 0.00 42.00 1.73
111 112 8.731275 TTTCACAAGTTTTGAGTGAGATTAGA 57.269 30.769 0.00 0.00 42.54 2.10
112 113 7.715265 TCACAAGTTTTGAGTGAGATTAGAC 57.285 36.000 0.00 0.00 37.36 2.59
113 114 7.272244 TCACAAGTTTTGAGTGAGATTAGACA 58.728 34.615 0.00 0.00 37.36 3.41
114 115 7.224753 TCACAAGTTTTGAGTGAGATTAGACAC 59.775 37.037 0.00 0.00 37.36 3.67
115 116 6.201044 ACAAGTTTTGAGTGAGATTAGACACG 59.799 38.462 0.00 0.00 41.22 4.49
116 117 6.085555 AGTTTTGAGTGAGATTAGACACGA 57.914 37.500 0.00 0.00 41.22 4.35
117 118 5.921408 AGTTTTGAGTGAGATTAGACACGAC 59.079 40.000 0.00 0.00 41.22 4.34
118 119 5.707242 TTTGAGTGAGATTAGACACGACT 57.293 39.130 0.00 0.00 41.22 4.18
119 120 6.812879 TTTGAGTGAGATTAGACACGACTA 57.187 37.500 0.00 0.00 41.22 2.59
120 121 6.812879 TTGAGTGAGATTAGACACGACTAA 57.187 37.500 0.00 0.00 41.22 2.24
121 122 7.392494 TTGAGTGAGATTAGACACGACTAAT 57.608 36.000 11.55 11.55 43.12 1.73
122 123 7.392494 TGAGTGAGATTAGACACGACTAATT 57.608 36.000 12.45 0.00 41.34 1.40
123 124 7.251281 TGAGTGAGATTAGACACGACTAATTG 58.749 38.462 12.45 0.00 41.34 2.32
124 125 7.120726 TGAGTGAGATTAGACACGACTAATTGA 59.879 37.037 12.45 2.56 41.34 2.57
125 126 7.251994 AGTGAGATTAGACACGACTAATTGAC 58.748 38.462 12.45 10.26 41.34 3.18
126 127 7.027760 GTGAGATTAGACACGACTAATTGACA 58.972 38.462 12.45 10.71 41.34 3.58
127 128 7.702772 GTGAGATTAGACACGACTAATTGACAT 59.297 37.037 12.45 2.61 41.34 3.06
128 129 7.702348 TGAGATTAGACACGACTAATTGACATG 59.298 37.037 12.45 0.00 41.34 3.21
129 130 7.772166 AGATTAGACACGACTAATTGACATGA 58.228 34.615 0.00 0.00 41.34 3.07
130 131 7.918033 AGATTAGACACGACTAATTGACATGAG 59.082 37.037 0.00 0.00 41.34 2.90
131 132 5.644977 AGACACGACTAATTGACATGAGA 57.355 39.130 0.00 0.00 0.00 3.27
132 133 6.025749 AGACACGACTAATTGACATGAGAA 57.974 37.500 0.00 0.00 0.00 2.87
133 134 6.455647 AGACACGACTAATTGACATGAGAAA 58.544 36.000 0.00 0.00 0.00 2.52
134 135 6.929049 AGACACGACTAATTGACATGAGAAAA 59.071 34.615 0.00 0.00 0.00 2.29
135 136 7.604164 AGACACGACTAATTGACATGAGAAAAT 59.396 33.333 0.00 0.00 0.00 1.82
136 137 8.771920 ACACGACTAATTGACATGAGAAAATA 57.228 30.769 0.00 0.00 0.00 1.40
137 138 8.873830 ACACGACTAATTGACATGAGAAAATAG 58.126 33.333 0.00 0.49 0.00 1.73
138 139 9.087424 CACGACTAATTGACATGAGAAAATAGA 57.913 33.333 0.00 0.00 0.00 1.98
139 140 9.307121 ACGACTAATTGACATGAGAAAATAGAG 57.693 33.333 0.00 1.59 0.00 2.43
140 141 8.759641 CGACTAATTGACATGAGAAAATAGAGG 58.240 37.037 0.00 0.00 0.00 3.69
141 142 9.823647 GACTAATTGACATGAGAAAATAGAGGA 57.176 33.333 0.00 0.00 0.00 3.71
142 143 9.829507 ACTAATTGACATGAGAAAATAGAGGAG 57.170 33.333 0.00 0.00 0.00 3.69
143 144 7.565323 AATTGACATGAGAAAATAGAGGAGC 57.435 36.000 0.00 0.00 0.00 4.70
144 145 5.946942 TGACATGAGAAAATAGAGGAGCT 57.053 39.130 0.00 0.00 0.00 4.09
145 146 6.305272 TGACATGAGAAAATAGAGGAGCTT 57.695 37.500 0.00 0.00 0.00 3.74
146 147 7.423844 TGACATGAGAAAATAGAGGAGCTTA 57.576 36.000 0.00 0.00 0.00 3.09
147 148 7.268586 TGACATGAGAAAATAGAGGAGCTTAC 58.731 38.462 0.00 0.00 0.00 2.34
148 149 7.093333 TGACATGAGAAAATAGAGGAGCTTACA 60.093 37.037 0.00 0.00 0.00 2.41
149 150 7.800092 ACATGAGAAAATAGAGGAGCTTACAT 58.200 34.615 0.00 0.00 0.00 2.29
150 151 7.714377 ACATGAGAAAATAGAGGAGCTTACATG 59.286 37.037 0.00 0.00 36.18 3.21
151 152 7.423844 TGAGAAAATAGAGGAGCTTACATGA 57.576 36.000 0.00 0.00 0.00 3.07
152 153 8.027524 TGAGAAAATAGAGGAGCTTACATGAT 57.972 34.615 0.00 0.00 0.00 2.45
153 154 9.147732 TGAGAAAATAGAGGAGCTTACATGATA 57.852 33.333 0.00 0.00 0.00 2.15
154 155 9.418045 GAGAAAATAGAGGAGCTTACATGATAC 57.582 37.037 0.00 0.00 0.00 2.24
155 156 8.928448 AGAAAATAGAGGAGCTTACATGATACA 58.072 33.333 0.00 0.00 0.00 2.29
156 157 9.547753 GAAAATAGAGGAGCTTACATGATACAA 57.452 33.333 0.00 0.00 0.00 2.41
157 158 9.553064 AAAATAGAGGAGCTTACATGATACAAG 57.447 33.333 0.00 0.00 0.00 3.16
158 159 5.543507 AGAGGAGCTTACATGATACAAGG 57.456 43.478 0.00 0.00 0.00 3.61
159 160 5.211973 AGAGGAGCTTACATGATACAAGGA 58.788 41.667 0.00 0.00 0.00 3.36
160 161 5.663106 AGAGGAGCTTACATGATACAAGGAA 59.337 40.000 0.00 0.00 0.00 3.36
161 162 6.156949 AGAGGAGCTTACATGATACAAGGAAA 59.843 38.462 0.00 0.00 0.00 3.13
162 163 6.904626 AGGAGCTTACATGATACAAGGAAAT 58.095 36.000 0.00 0.00 0.00 2.17
163 164 6.769822 AGGAGCTTACATGATACAAGGAAATG 59.230 38.462 0.00 0.00 0.00 2.32
164 165 6.543831 GGAGCTTACATGATACAAGGAAATGT 59.456 38.462 0.00 0.00 37.32 2.71
165 166 7.715249 GGAGCTTACATGATACAAGGAAATGTA 59.285 37.037 0.00 0.00 39.91 2.29
166 167 9.109393 GAGCTTACATGATACAAGGAAATGTAA 57.891 33.333 0.00 6.43 39.91 2.41
167 168 9.632638 AGCTTACATGATACAAGGAAATGTAAT 57.367 29.630 0.00 0.00 40.81 1.89
168 169 9.884465 GCTTACATGATACAAGGAAATGTAATC 57.116 33.333 0.00 0.98 40.81 1.75
175 176 8.912988 TGATACAAGGAAATGTAATCAAATCCC 58.087 33.333 0.00 0.00 39.12 3.85
176 177 9.136323 GATACAAGGAAATGTAATCAAATCCCT 57.864 33.333 0.00 0.00 39.12 4.20
178 179 8.893563 ACAAGGAAATGTAATCAAATCCCTAA 57.106 30.769 0.00 0.00 34.79 2.69
179 180 9.320295 ACAAGGAAATGTAATCAAATCCCTAAA 57.680 29.630 0.00 0.00 34.79 1.85
202 203 4.434713 AAAATATCCAAACGAGTGGTGC 57.565 40.909 8.62 0.00 39.88 5.01
203 204 2.779755 ATATCCAAACGAGTGGTGCA 57.220 45.000 8.62 0.00 39.88 4.57
204 205 2.552599 TATCCAAACGAGTGGTGCAA 57.447 45.000 8.62 0.00 39.88 4.08
205 206 0.951558 ATCCAAACGAGTGGTGCAAC 59.048 50.000 0.00 0.00 39.88 4.17
206 207 1.010125 CCAAACGAGTGGTGCAACG 60.010 57.895 0.00 0.00 38.12 4.10
207 208 1.654137 CAAACGAGTGGTGCAACGC 60.654 57.895 7.36 7.36 38.12 4.84
208 209 2.109739 AAACGAGTGGTGCAACGCA 61.110 52.632 19.16 0.00 38.12 5.24
209 210 1.649390 AAACGAGTGGTGCAACGCAA 61.649 50.000 19.16 0.00 41.47 4.85
210 211 1.444119 AACGAGTGGTGCAACGCAAT 61.444 50.000 19.16 0.00 41.47 3.56
211 212 0.601576 ACGAGTGGTGCAACGCAATA 60.602 50.000 19.16 0.00 41.47 1.90
212 213 0.179225 CGAGTGGTGCAACGCAATAC 60.179 55.000 19.16 0.00 41.47 1.89
213 214 0.871722 GAGTGGTGCAACGCAATACA 59.128 50.000 19.16 0.00 41.47 2.29
214 215 0.874390 AGTGGTGCAACGCAATACAG 59.126 50.000 19.16 0.00 41.47 2.74
215 216 0.729140 GTGGTGCAACGCAATACAGC 60.729 55.000 11.22 0.00 41.47 4.40
216 217 0.888736 TGGTGCAACGCAATACAGCT 60.889 50.000 0.00 0.00 41.47 4.24
217 218 0.240945 GGTGCAACGCAATACAGCTT 59.759 50.000 0.00 0.00 41.47 3.74
218 219 1.466950 GGTGCAACGCAATACAGCTTA 59.533 47.619 0.00 0.00 41.47 3.09
219 220 2.097466 GGTGCAACGCAATACAGCTTAT 59.903 45.455 0.00 0.00 41.47 1.73
220 221 3.311322 GGTGCAACGCAATACAGCTTATA 59.689 43.478 0.00 0.00 41.47 0.98
221 222 4.024048 GGTGCAACGCAATACAGCTTATAT 60.024 41.667 0.00 0.00 41.47 0.86
222 223 5.505654 GGTGCAACGCAATACAGCTTATATT 60.506 40.000 0.00 0.00 41.47 1.28
223 224 5.971202 GTGCAACGCAATACAGCTTATATTT 59.029 36.000 0.00 0.00 41.47 1.40
224 225 6.140737 GTGCAACGCAATACAGCTTATATTTC 59.859 38.462 0.00 0.00 41.47 2.17
225 226 5.336990 GCAACGCAATACAGCTTATATTTCG 59.663 40.000 14.17 14.17 35.61 3.46
226 227 5.591643 ACGCAATACAGCTTATATTTCGG 57.408 39.130 17.79 6.26 34.36 4.30
227 228 5.294356 ACGCAATACAGCTTATATTTCGGA 58.706 37.500 17.79 0.00 34.36 4.55
228 229 5.176958 ACGCAATACAGCTTATATTTCGGAC 59.823 40.000 17.79 0.93 34.36 4.79
229 230 5.405571 CGCAATACAGCTTATATTTCGGACT 59.594 40.000 10.07 0.00 28.90 3.85
230 231 6.073765 CGCAATACAGCTTATATTTCGGACTT 60.074 38.462 10.07 0.00 28.90 3.01
231 232 7.518370 CGCAATACAGCTTATATTTCGGACTTT 60.518 37.037 10.07 0.00 28.90 2.66
232 233 8.129211 GCAATACAGCTTATATTTCGGACTTTT 58.871 33.333 0.00 0.00 0.00 2.27
235 236 7.923414 ACAGCTTATATTTCGGACTTTTTCT 57.077 32.000 0.00 0.00 0.00 2.52
236 237 7.975750 ACAGCTTATATTTCGGACTTTTTCTC 58.024 34.615 0.00 0.00 0.00 2.87
237 238 7.606456 ACAGCTTATATTTCGGACTTTTTCTCA 59.394 33.333 0.00 0.00 0.00 3.27
238 239 8.450964 CAGCTTATATTTCGGACTTTTTCTCAA 58.549 33.333 0.00 0.00 0.00 3.02
239 240 9.010029 AGCTTATATTTCGGACTTTTTCTCAAA 57.990 29.630 0.00 0.00 0.00 2.69
240 241 9.620660 GCTTATATTTCGGACTTTTTCTCAAAA 57.379 29.630 0.00 0.00 0.00 2.44
249 250 9.496873 TCGGACTTTTTCTCAAAAATCTATACA 57.503 29.630 0.00 0.00 39.43 2.29
250 251 9.543018 CGGACTTTTTCTCAAAAATCTATACAC 57.457 33.333 0.00 0.00 39.43 2.90
251 252 9.841880 GGACTTTTTCTCAAAAATCTATACACC 57.158 33.333 0.00 0.00 39.43 4.16
267 268 8.118976 TCTATACACCTTATATCAAGGAACGG 57.881 38.462 9.96 0.05 39.81 4.44
268 269 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
269 270 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
270 271 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
271 272 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
272 273 3.901844 CCTTATATCAAGGAACGGAGGGA 59.098 47.826 0.00 0.00 39.81 4.20
273 274 4.021016 CCTTATATCAAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 39.81 4.30
304 305 1.728971 CTGACGTTGGCTCTGCTAAAG 59.271 52.381 0.00 0.94 35.14 1.85
319 320 1.130561 CTAAAGCCGGCCTCTTTTTCG 59.869 52.381 26.15 9.04 35.58 3.46
442 460 7.147897 CGGCTACTCCATCCATCTAATAATGTA 60.148 40.741 0.00 0.00 34.01 2.29
470 488 6.708949 ACGTTAATACATCCAATATGTGACCC 59.291 38.462 0.97 0.00 33.76 4.46
471 489 6.708502 CGTTAATACATCCAATATGTGACCCA 59.291 38.462 0.97 0.00 33.76 4.51
472 490 7.227711 CGTTAATACATCCAATATGTGACCCAA 59.772 37.037 0.97 0.00 33.76 4.12
473 491 9.077885 GTTAATACATCCAATATGTGACCCAAT 57.922 33.333 0.97 0.00 33.76 3.16
477 495 9.905713 ATACATCCAATATGTGACCCAATATAC 57.094 33.333 0.97 0.00 33.76 1.47
478 496 7.988937 ACATCCAATATGTGACCCAATATACT 58.011 34.615 0.00 0.00 0.00 2.12
479 497 8.448008 ACATCCAATATGTGACCCAATATACTT 58.552 33.333 0.00 0.00 0.00 2.24
480 498 9.958180 CATCCAATATGTGACCCAATATACTTA 57.042 33.333 0.00 0.00 0.00 2.24
481 499 9.959721 ATCCAATATGTGACCCAATATACTTAC 57.040 33.333 0.00 0.00 0.00 2.34
482 500 8.939932 TCCAATATGTGACCCAATATACTTACA 58.060 33.333 0.00 0.00 0.00 2.41
483 501 8.999431 CCAATATGTGACCCAATATACTTACAC 58.001 37.037 0.00 0.00 0.00 2.90
484 502 9.554395 CAATATGTGACCCAATATACTTACACA 57.446 33.333 0.00 0.00 40.35 3.72
508 526 5.733226 TGGATGTAATAACGTCTTGCATG 57.267 39.130 15.65 0.00 40.82 4.06
509 527 4.574421 TGGATGTAATAACGTCTTGCATGG 59.426 41.667 15.65 0.00 40.82 3.66
510 528 4.024048 GGATGTAATAACGTCTTGCATGGG 60.024 45.833 15.65 0.00 40.82 4.00
511 529 2.680841 TGTAATAACGTCTTGCATGGGC 59.319 45.455 0.00 0.00 41.68 5.36
658 680 7.710475 ACCTTTTTCATGATGTAACCAAACAAG 59.290 33.333 0.00 0.00 32.02 3.16
676 1298 4.084287 ACAAGCTTTGATCCATGACATGT 58.916 39.130 14.26 0.00 0.00 3.21
693 1315 3.887110 ACATGTCATGGCTCCACAATATG 59.113 43.478 17.08 0.00 33.60 1.78
704 1326 5.121811 GCTCCACAATATGAGTCAGTTCAT 58.878 41.667 0.00 0.00 40.70 2.57
706 1328 6.201806 GCTCCACAATATGAGTCAGTTCATAC 59.798 42.308 0.00 0.00 41.46 2.39
707 1329 6.582636 TCCACAATATGAGTCAGTTCATACC 58.417 40.000 0.00 0.00 41.46 2.73
708 1330 5.760253 CCACAATATGAGTCAGTTCATACCC 59.240 44.000 0.00 0.00 41.46 3.69
709 1331 6.408548 CCACAATATGAGTCAGTTCATACCCT 60.409 42.308 0.00 0.00 41.46 4.34
712 1334 2.256306 TGAGTCAGTTCATACCCTGCA 58.744 47.619 0.00 0.00 0.00 4.41
713 1335 2.637382 TGAGTCAGTTCATACCCTGCAA 59.363 45.455 0.00 0.00 0.00 4.08
714 1336 3.072330 TGAGTCAGTTCATACCCTGCAAA 59.928 43.478 0.00 0.00 0.00 3.68
715 1337 4.072131 GAGTCAGTTCATACCCTGCAAAA 58.928 43.478 0.00 0.00 0.00 2.44
716 1338 4.469657 AGTCAGTTCATACCCTGCAAAAA 58.530 39.130 0.00 0.00 0.00 1.94
800 1422 7.893824 TCAACATTTGCGAAAACATATAATGC 58.106 30.769 0.00 0.00 0.00 3.56
802 1424 5.458452 ACATTTGCGAAAACATATAATGCGG 59.542 36.000 0.00 0.00 0.00 5.69
807 1429 4.772434 CGAAAACATATAATGCGGGTCAG 58.228 43.478 0.00 0.00 0.00 3.51
808 1430 4.272504 CGAAAACATATAATGCGGGTCAGT 59.727 41.667 0.00 0.00 0.00 3.41
827 1449 7.256332 GGGTCAGTATATCTTCTTAGAATGGCA 60.256 40.741 0.00 0.00 33.20 4.92
829 1451 8.144478 GTCAGTATATCTTCTTAGAATGGCACA 58.856 37.037 0.00 0.00 35.51 4.57
894 1516 4.823157 TCCTCAAATGCCATGTCAAATTG 58.177 39.130 0.00 0.00 0.00 2.32
901 1523 6.489127 AATGCCATGTCAAATTGTCAAATG 57.511 33.333 0.00 0.00 0.00 2.32
911 1533 6.144402 GTCAAATTGTCAAATGTGCCTAACAG 59.856 38.462 0.00 0.00 43.64 3.16
920 1542 5.995565 AATGTGCCTAACAGACTACACTA 57.004 39.130 0.00 0.00 43.64 2.74
929 1551 6.824196 CCTAACAGACTACACTATCACTCTGA 59.176 42.308 0.00 0.00 31.47 3.27
930 1552 6.751514 AACAGACTACACTATCACTCTGAG 57.248 41.667 2.45 2.45 31.47 3.35
931 1553 6.056090 ACAGACTACACTATCACTCTGAGA 57.944 41.667 12.44 0.00 31.47 3.27
932 1554 6.477253 ACAGACTACACTATCACTCTGAGAA 58.523 40.000 12.44 0.00 31.47 2.87
933 1555 6.943146 ACAGACTACACTATCACTCTGAGAAA 59.057 38.462 12.44 0.00 31.47 2.52
934 1556 7.448777 ACAGACTACACTATCACTCTGAGAAAA 59.551 37.037 12.44 0.00 31.47 2.29
935 1557 8.300286 CAGACTACACTATCACTCTGAGAAAAA 58.700 37.037 12.44 0.00 0.00 1.94
936 1558 8.301002 AGACTACACTATCACTCTGAGAAAAAC 58.699 37.037 12.44 0.00 0.00 2.43
937 1559 7.952671 ACTACACTATCACTCTGAGAAAAACA 58.047 34.615 12.44 0.00 0.00 2.83
938 1560 7.868415 ACTACACTATCACTCTGAGAAAAACAC 59.132 37.037 12.44 0.00 0.00 3.32
939 1561 6.582636 ACACTATCACTCTGAGAAAAACACA 58.417 36.000 12.44 0.00 0.00 3.72
940 1562 7.220030 ACACTATCACTCTGAGAAAAACACAT 58.780 34.615 12.44 0.00 0.00 3.21
941 1563 7.716998 ACACTATCACTCTGAGAAAAACACATT 59.283 33.333 12.44 0.00 0.00 2.71
942 1564 8.562892 CACTATCACTCTGAGAAAAACACATTT 58.437 33.333 12.44 0.00 0.00 2.32
943 1565 9.125026 ACTATCACTCTGAGAAAAACACATTTT 57.875 29.630 12.44 0.00 43.85 1.82
988 1610 5.794894 ACACTAGTACACCAAAGATCTTGG 58.205 41.667 9.17 14.42 44.91 3.61
1460 2085 2.277120 CGCGTTCTACGTCTCCGG 60.277 66.667 0.00 0.00 44.73 5.14
1602 2230 3.315521 CTCTTCGACGCGATGCCG 61.316 66.667 15.93 10.89 35.23 5.69
1627 2255 3.836176 GACGCCGTGTCGTGGAACT 62.836 63.158 0.00 0.00 43.42 3.01
1777 2405 3.805267 GCATGAGGAGCCTGTTCG 58.195 61.111 0.00 0.00 0.00 3.95
2092 2720 3.556817 ATCTTCACCAAGATGCGCA 57.443 47.368 14.96 14.96 46.06 6.09
2576 3212 0.711670 TGCGAACGTAATTCAGACGC 59.288 50.000 0.00 0.00 44.14 5.19
2590 3226 1.211969 GACGCCGCTGACTGACTTA 59.788 57.895 0.00 0.00 0.00 2.24
2595 3231 0.249073 CCGCTGACTGACTTATCCGG 60.249 60.000 0.00 0.00 0.00 5.14
2607 3323 1.665264 TTATCCGGGCTCGCGTGTTA 61.665 55.000 5.77 0.00 34.56 2.41
2624 3340 0.172578 TTACCATGGCTGTCGACGAG 59.827 55.000 13.04 10.50 0.00 4.18
2716 3439 2.676471 GCCACCAAGACGCCCATT 60.676 61.111 0.00 0.00 0.00 3.16
2831 3596 6.176183 GCAGATTATTATGGGCTATGTCAGT 58.824 40.000 0.00 0.00 0.00 3.41
2841 3606 4.641541 TGGGCTATGTCAGTTTTCATGATG 59.358 41.667 0.00 0.00 0.00 3.07
2886 3651 4.649267 TCTGTTGATTGGGTGTTATGGA 57.351 40.909 0.00 0.00 0.00 3.41
2894 3660 1.004277 TGGGTGTTATGGACAAGAGGC 59.996 52.381 0.00 0.00 40.65 4.70
2898 3664 3.826729 GGTGTTATGGACAAGAGGCTTTT 59.173 43.478 0.00 0.00 40.65 2.27
2921 3687 3.063997 CAGGTATGCTCGGTTCAATTGAC 59.936 47.826 7.89 3.65 0.00 3.18
2927 3693 1.872952 CTCGGTTCAATTGACTGCACA 59.127 47.619 7.89 0.00 0.00 4.57
2937 3703 1.443802 TGACTGCACACGTTGACAAA 58.556 45.000 0.00 0.00 0.00 2.83
2938 3704 2.013400 TGACTGCACACGTTGACAAAT 58.987 42.857 0.00 0.00 0.00 2.32
2939 3705 2.223226 TGACTGCACACGTTGACAAATG 60.223 45.455 0.00 0.00 0.00 2.32
2946 3712 4.035017 CACACGTTGACAAATGGAAGAAC 58.965 43.478 5.85 0.00 0.00 3.01
2961 3727 4.079672 TGGAAGAACTGTCCCAAAGGTTTA 60.080 41.667 0.00 0.00 33.89 2.01
2964 3730 3.826729 AGAACTGTCCCAAAGGTTTATGC 59.173 43.478 0.00 0.00 0.00 3.14
2965 3731 2.525368 ACTGTCCCAAAGGTTTATGCC 58.475 47.619 0.00 0.00 0.00 4.40
2977 3743 2.356695 GGTTTATGCCGGATGTACCAAC 59.643 50.000 5.05 0.00 38.90 3.77
2978 3744 3.011119 GTTTATGCCGGATGTACCAACA 58.989 45.455 5.05 0.00 40.69 3.33
2996 3762 1.070758 ACATCACACCACAGAGGACAC 59.929 52.381 0.00 0.00 41.22 3.67
3007 3773 2.690497 ACAGAGGACACCATCATACTCG 59.310 50.000 0.00 0.00 0.00 4.18
3008 3774 2.952310 CAGAGGACACCATCATACTCGA 59.048 50.000 0.00 0.00 0.00 4.04
3009 3775 3.381590 CAGAGGACACCATCATACTCGAA 59.618 47.826 0.00 0.00 0.00 3.71
3010 3776 3.634448 AGAGGACACCATCATACTCGAAG 59.366 47.826 0.00 0.00 0.00 3.79
3012 3778 2.159099 GGACACCATCATACTCGAAGCA 60.159 50.000 0.00 0.00 0.00 3.91
3014 3780 2.497675 ACACCATCATACTCGAAGCAGT 59.502 45.455 0.00 0.00 0.00 4.40
3026 3924 1.152483 AAGCAGTGGCCAACATGGT 60.152 52.632 7.24 10.12 40.46 3.55
3083 3982 3.270877 GGCGTTTGTGAAGACCATATCT 58.729 45.455 0.00 0.00 40.46 1.98
3124 4023 6.709018 ACAAAGCCACTTTACAACAATACT 57.291 33.333 0.00 0.00 31.96 2.12
3125 4024 7.811117 ACAAAGCCACTTTACAACAATACTA 57.189 32.000 0.00 0.00 31.96 1.82
3126 4025 8.404107 ACAAAGCCACTTTACAACAATACTAT 57.596 30.769 0.00 0.00 31.96 2.12
3127 4026 9.509956 ACAAAGCCACTTTACAACAATACTATA 57.490 29.630 0.00 0.00 31.96 1.31
3130 4029 9.734984 AAGCCACTTTACAACAATACTATAAGT 57.265 29.630 0.00 0.00 0.00 2.24
3150 4053 6.936968 AAGTAACTAGGAAGGATGTGAAGT 57.063 37.500 0.00 0.00 0.00 3.01
3159 4062 1.106285 GGATGTGAAGTGGGCATTCC 58.894 55.000 0.00 0.00 0.00 3.01
3192 4095 2.225017 ACTCATTGGGGAATTGTCCGTT 60.225 45.455 0.00 0.00 46.04 4.44
3220 4123 3.801698 CAGTGATGTGGGAATCGAAGAT 58.198 45.455 0.00 0.00 45.12 2.40
3230 4133 3.056891 GGGAATCGAAGATTTTGTGGCAA 60.057 43.478 0.00 0.00 45.12 4.52
3232 4135 3.575965 ATCGAAGATTTTGTGGCAACC 57.424 42.857 0.00 0.00 45.12 3.77
3233 4136 2.302260 TCGAAGATTTTGTGGCAACCA 58.698 42.857 0.00 0.00 0.00 3.67
3258 4165 5.258685 GACATGTGTCATTTTGCACAATG 57.741 39.130 17.67 17.67 46.75 2.82
3361 4271 9.730705 AGAACAAGATGTAGATCAGATTCAAAA 57.269 29.630 2.30 0.00 0.00 2.44
3368 4278 9.448294 GATGTAGATCAGATTCAAAATTTCTGC 57.552 33.333 0.00 0.00 37.41 4.26
3370 4280 8.795513 TGTAGATCAGATTCAAAATTTCTGCAA 58.204 29.630 0.00 0.00 37.41 4.08
3407 4317 4.329392 TCAAGATCAACAGATGCATGTGT 58.671 39.130 22.84 22.84 35.62 3.72
3414 4324 4.935205 TCAACAGATGCATGTGTAACTACC 59.065 41.667 27.71 0.00 38.04 3.18
3417 4327 4.260985 CAGATGCATGTGTAACTACCCAA 58.739 43.478 15.45 0.00 38.04 4.12
3430 4341 6.821665 TGTAACTACCCAATAATCTTGTGAGC 59.178 38.462 0.00 0.00 0.00 4.26
3435 4346 8.880244 ACTACCCAATAATCTTGTGAGCATATA 58.120 33.333 0.00 0.00 0.00 0.86
3480 4391 8.598075 CAAAGAGCTTAATGTTTGAATTATGCC 58.402 33.333 9.77 4.42 41.02 4.40
3483 4394 8.139989 AGAGCTTAATGTTTGAATTATGCCATC 58.860 33.333 9.77 4.62 41.02 3.51
3485 4396 8.259411 AGCTTAATGTTTGAATTATGCCATCAA 58.741 29.630 9.77 0.00 41.02 2.57
3538 4449 9.662947 CATGTGATATTCATGTGTATGGTAGAT 57.337 33.333 11.32 0.00 38.17 1.98
3551 4462 9.802039 TGTGTATGGTAGATATAGTGTATGACA 57.198 33.333 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.514330 AACGGATGGAGTATAAAATTAAAGCA 57.486 30.769 0.00 0.00 0.00 3.91
1 2 8.074370 GGAACGGATGGAGTATAAAATTAAAGC 58.926 37.037 0.00 0.00 0.00 3.51
2 3 9.338622 AGGAACGGATGGAGTATAAAATTAAAG 57.661 33.333 0.00 0.00 0.00 1.85
4 5 9.991906 CTAGGAACGGATGGAGTATAAAATTAA 57.008 33.333 0.00 0.00 0.00 1.40
5 6 9.370930 TCTAGGAACGGATGGAGTATAAAATTA 57.629 33.333 0.00 0.00 0.00 1.40
6 7 8.258850 TCTAGGAACGGATGGAGTATAAAATT 57.741 34.615 0.00 0.00 0.00 1.82
7 8 7.850935 TCTAGGAACGGATGGAGTATAAAAT 57.149 36.000 0.00 0.00 0.00 1.82
8 9 7.850935 ATCTAGGAACGGATGGAGTATAAAA 57.149 36.000 0.00 0.00 0.00 1.52
10 11 9.848710 CTATATCTAGGAACGGATGGAGTATAA 57.151 37.037 0.00 0.00 0.00 0.98
11 12 8.438373 CCTATATCTAGGAACGGATGGAGTATA 58.562 40.741 0.00 0.00 46.66 1.47
12 13 7.291566 CCTATATCTAGGAACGGATGGAGTAT 58.708 42.308 0.00 0.00 46.66 2.12
13 14 6.660800 CCTATATCTAGGAACGGATGGAGTA 58.339 44.000 0.00 0.00 46.66 2.59
14 15 5.511363 CCTATATCTAGGAACGGATGGAGT 58.489 45.833 0.00 0.00 46.66 3.85
29 30 9.726438 GTGCCAAAAACTATACATCCTATATCT 57.274 33.333 0.00 0.00 0.00 1.98
30 31 8.656849 CGTGCCAAAAACTATACATCCTATATC 58.343 37.037 0.00 0.00 0.00 1.63
31 32 7.606456 CCGTGCCAAAAACTATACATCCTATAT 59.394 37.037 0.00 0.00 0.00 0.86
32 33 6.932400 CCGTGCCAAAAACTATACATCCTATA 59.068 38.462 0.00 0.00 0.00 1.31
33 34 5.763204 CCGTGCCAAAAACTATACATCCTAT 59.237 40.000 0.00 0.00 0.00 2.57
34 35 5.104859 TCCGTGCCAAAAACTATACATCCTA 60.105 40.000 0.00 0.00 0.00 2.94
35 36 3.945285 CCGTGCCAAAAACTATACATCCT 59.055 43.478 0.00 0.00 0.00 3.24
36 37 3.942748 TCCGTGCCAAAAACTATACATCC 59.057 43.478 0.00 0.00 0.00 3.51
37 38 5.554822 TTCCGTGCCAAAAACTATACATC 57.445 39.130 0.00 0.00 0.00 3.06
38 39 5.968528 TTTCCGTGCCAAAAACTATACAT 57.031 34.783 0.00 0.00 0.00 2.29
39 40 5.968528 ATTTCCGTGCCAAAAACTATACA 57.031 34.783 0.00 0.00 0.00 2.29
40 41 8.745464 TTTAATTTCCGTGCCAAAAACTATAC 57.255 30.769 0.00 0.00 0.00 1.47
41 42 8.794553 TCTTTAATTTCCGTGCCAAAAACTATA 58.205 29.630 0.00 0.00 0.00 1.31
42 43 7.662897 TCTTTAATTTCCGTGCCAAAAACTAT 58.337 30.769 0.00 0.00 0.00 2.12
43 44 7.040473 TCTTTAATTTCCGTGCCAAAAACTA 57.960 32.000 0.00 0.00 0.00 2.24
44 45 5.908341 TCTTTAATTTCCGTGCCAAAAACT 58.092 33.333 0.00 0.00 0.00 2.66
45 46 6.415702 GTTCTTTAATTTCCGTGCCAAAAAC 58.584 36.000 0.00 0.00 0.00 2.43
46 47 5.232414 CGTTCTTTAATTTCCGTGCCAAAAA 59.768 36.000 0.00 0.00 0.00 1.94
47 48 4.740695 CGTTCTTTAATTTCCGTGCCAAAA 59.259 37.500 0.00 0.00 0.00 2.44
48 49 4.291783 CGTTCTTTAATTTCCGTGCCAAA 58.708 39.130 0.00 0.00 0.00 3.28
49 50 3.854045 GCGTTCTTTAATTTCCGTGCCAA 60.854 43.478 0.00 0.00 0.00 4.52
50 51 2.350964 GCGTTCTTTAATTTCCGTGCCA 60.351 45.455 0.00 0.00 0.00 4.92
51 52 2.247637 GCGTTCTTTAATTTCCGTGCC 58.752 47.619 0.00 0.00 0.00 5.01
52 53 2.655001 GTGCGTTCTTTAATTTCCGTGC 59.345 45.455 0.00 0.00 0.00 5.34
53 54 2.900046 CGTGCGTTCTTTAATTTCCGTG 59.100 45.455 0.00 0.00 0.00 4.94
54 55 2.545106 ACGTGCGTTCTTTAATTTCCGT 59.455 40.909 0.00 0.00 0.00 4.69
55 56 2.900046 CACGTGCGTTCTTTAATTTCCG 59.100 45.455 0.82 0.00 0.00 4.30
56 57 3.058777 TCCACGTGCGTTCTTTAATTTCC 60.059 43.478 10.91 0.00 0.00 3.13
57 58 4.136517 TCCACGTGCGTTCTTTAATTTC 57.863 40.909 10.91 0.00 0.00 2.17
58 59 3.058501 CCTCCACGTGCGTTCTTTAATTT 60.059 43.478 10.91 0.00 0.00 1.82
59 60 2.482721 CCTCCACGTGCGTTCTTTAATT 59.517 45.455 10.91 0.00 0.00 1.40
60 61 2.073816 CCTCCACGTGCGTTCTTTAAT 58.926 47.619 10.91 0.00 0.00 1.40
61 62 1.504359 CCTCCACGTGCGTTCTTTAA 58.496 50.000 10.91 0.00 0.00 1.52
62 63 0.320073 CCCTCCACGTGCGTTCTTTA 60.320 55.000 10.91 0.00 0.00 1.85
63 64 1.597027 CCCTCCACGTGCGTTCTTT 60.597 57.895 10.91 0.00 0.00 2.52
64 65 2.030562 CCCTCCACGTGCGTTCTT 59.969 61.111 10.91 0.00 0.00 2.52
65 66 2.035237 TTTCCCTCCACGTGCGTTCT 62.035 55.000 10.91 0.00 0.00 3.01
66 67 1.161563 TTTTCCCTCCACGTGCGTTC 61.162 55.000 10.91 0.00 0.00 3.95
67 68 0.536460 ATTTTCCCTCCACGTGCGTT 60.536 50.000 10.91 0.00 0.00 4.84
68 69 0.536460 AATTTTCCCTCCACGTGCGT 60.536 50.000 10.91 0.00 0.00 5.24
69 70 0.596082 AAATTTTCCCTCCACGTGCG 59.404 50.000 10.91 3.66 0.00 5.34
70 71 1.611491 TGAAATTTTCCCTCCACGTGC 59.389 47.619 10.91 0.00 0.00 5.34
71 72 2.621055 TGTGAAATTTTCCCTCCACGTG 59.379 45.455 9.08 9.08 0.00 4.49
72 73 2.938838 TGTGAAATTTTCCCTCCACGT 58.061 42.857 6.68 0.00 0.00 4.49
73 74 3.317993 ACTTGTGAAATTTTCCCTCCACG 59.682 43.478 6.68 0.00 0.00 4.94
74 75 4.937201 ACTTGTGAAATTTTCCCTCCAC 57.063 40.909 6.68 0.00 0.00 4.02
75 76 5.948742 AAACTTGTGAAATTTTCCCTCCA 57.051 34.783 6.68 0.00 0.00 3.86
76 77 6.345298 TCAAAACTTGTGAAATTTTCCCTCC 58.655 36.000 6.68 0.00 0.00 4.30
77 78 7.010460 CACTCAAAACTTGTGAAATTTTCCCTC 59.990 37.037 6.68 0.00 33.95 4.30
78 79 6.818142 CACTCAAAACTTGTGAAATTTTCCCT 59.182 34.615 6.68 0.00 33.95 4.20
79 80 6.816140 TCACTCAAAACTTGTGAAATTTTCCC 59.184 34.615 6.68 0.00 37.71 3.97
80 81 7.759433 TCTCACTCAAAACTTGTGAAATTTTCC 59.241 33.333 6.68 0.00 39.74 3.13
81 82 8.687824 TCTCACTCAAAACTTGTGAAATTTTC 57.312 30.769 2.05 2.05 39.74 2.29
82 83 9.657419 AATCTCACTCAAAACTTGTGAAATTTT 57.343 25.926 0.00 0.00 39.74 1.82
84 85 9.956720 CTAATCTCACTCAAAACTTGTGAAATT 57.043 29.630 0.00 0.00 39.74 1.82
85 86 9.342308 TCTAATCTCACTCAAAACTTGTGAAAT 57.658 29.630 0.00 0.00 39.74 2.17
86 87 8.612619 GTCTAATCTCACTCAAAACTTGTGAAA 58.387 33.333 0.00 0.00 39.74 2.69
87 88 7.768582 TGTCTAATCTCACTCAAAACTTGTGAA 59.231 33.333 0.00 0.00 39.74 3.18
88 89 7.224753 GTGTCTAATCTCACTCAAAACTTGTGA 59.775 37.037 0.00 0.00 38.24 3.58
89 90 7.348201 GTGTCTAATCTCACTCAAAACTTGTG 58.652 38.462 0.00 0.00 0.00 3.33
90 91 6.201044 CGTGTCTAATCTCACTCAAAACTTGT 59.799 38.462 0.00 0.00 33.07 3.16
91 92 6.420903 TCGTGTCTAATCTCACTCAAAACTTG 59.579 38.462 0.00 0.00 33.07 3.16
92 93 6.421202 GTCGTGTCTAATCTCACTCAAAACTT 59.579 38.462 0.00 0.00 33.07 2.66
93 94 5.921408 GTCGTGTCTAATCTCACTCAAAACT 59.079 40.000 0.00 0.00 33.07 2.66
94 95 5.921408 AGTCGTGTCTAATCTCACTCAAAAC 59.079 40.000 0.00 0.00 33.07 2.43
95 96 6.085555 AGTCGTGTCTAATCTCACTCAAAA 57.914 37.500 0.00 0.00 33.07 2.44
96 97 5.707242 AGTCGTGTCTAATCTCACTCAAA 57.293 39.130 0.00 0.00 33.07 2.69
97 98 6.812879 TTAGTCGTGTCTAATCTCACTCAA 57.187 37.500 0.00 0.00 33.07 3.02
98 99 7.120726 TCAATTAGTCGTGTCTAATCTCACTCA 59.879 37.037 9.33 0.00 38.98 3.41
99 100 7.429920 GTCAATTAGTCGTGTCTAATCTCACTC 59.570 40.741 9.33 0.00 38.98 3.51
100 101 7.094334 TGTCAATTAGTCGTGTCTAATCTCACT 60.094 37.037 9.33 0.00 38.98 3.41
101 102 7.027760 TGTCAATTAGTCGTGTCTAATCTCAC 58.972 38.462 9.33 0.00 38.98 3.51
102 103 7.153217 TGTCAATTAGTCGTGTCTAATCTCA 57.847 36.000 9.33 7.44 38.98 3.27
103 104 7.915923 TCATGTCAATTAGTCGTGTCTAATCTC 59.084 37.037 0.00 5.86 38.98 2.75
104 105 7.772166 TCATGTCAATTAGTCGTGTCTAATCT 58.228 34.615 0.00 0.00 38.98 2.40
105 106 7.915923 TCTCATGTCAATTAGTCGTGTCTAATC 59.084 37.037 0.00 2.06 38.98 1.75
106 107 7.772166 TCTCATGTCAATTAGTCGTGTCTAAT 58.228 34.615 0.00 0.00 40.84 1.73
107 108 7.153217 TCTCATGTCAATTAGTCGTGTCTAA 57.847 36.000 0.00 0.00 34.94 2.10
108 109 6.753107 TCTCATGTCAATTAGTCGTGTCTA 57.247 37.500 0.00 0.00 0.00 2.59
109 110 5.644977 TCTCATGTCAATTAGTCGTGTCT 57.355 39.130 0.00 0.00 0.00 3.41
110 111 6.706055 TTTCTCATGTCAATTAGTCGTGTC 57.294 37.500 0.00 0.00 0.00 3.67
111 112 7.672983 ATTTTCTCATGTCAATTAGTCGTGT 57.327 32.000 0.00 0.00 0.00 4.49
112 113 9.087424 TCTATTTTCTCATGTCAATTAGTCGTG 57.913 33.333 0.00 0.00 0.00 4.35
113 114 9.307121 CTCTATTTTCTCATGTCAATTAGTCGT 57.693 33.333 0.00 0.00 0.00 4.34
114 115 8.759641 CCTCTATTTTCTCATGTCAATTAGTCG 58.240 37.037 0.00 0.00 0.00 4.18
115 116 9.823647 TCCTCTATTTTCTCATGTCAATTAGTC 57.176 33.333 0.00 0.00 0.00 2.59
116 117 9.829507 CTCCTCTATTTTCTCATGTCAATTAGT 57.170 33.333 0.00 0.00 0.00 2.24
117 118 8.772705 GCTCCTCTATTTTCTCATGTCAATTAG 58.227 37.037 0.00 0.00 0.00 1.73
118 119 8.489489 AGCTCCTCTATTTTCTCATGTCAATTA 58.511 33.333 0.00 0.00 0.00 1.40
119 120 7.344913 AGCTCCTCTATTTTCTCATGTCAATT 58.655 34.615 0.00 0.00 0.00 2.32
120 121 6.897986 AGCTCCTCTATTTTCTCATGTCAAT 58.102 36.000 0.00 0.00 0.00 2.57
121 122 6.305272 AGCTCCTCTATTTTCTCATGTCAA 57.695 37.500 0.00 0.00 0.00 3.18
122 123 5.946942 AGCTCCTCTATTTTCTCATGTCA 57.053 39.130 0.00 0.00 0.00 3.58
123 124 7.268586 TGTAAGCTCCTCTATTTTCTCATGTC 58.731 38.462 0.00 0.00 0.00 3.06
124 125 7.187824 TGTAAGCTCCTCTATTTTCTCATGT 57.812 36.000 0.00 0.00 0.00 3.21
125 126 7.930325 TCATGTAAGCTCCTCTATTTTCTCATG 59.070 37.037 0.00 0.00 0.00 3.07
126 127 8.027524 TCATGTAAGCTCCTCTATTTTCTCAT 57.972 34.615 0.00 0.00 0.00 2.90
127 128 7.423844 TCATGTAAGCTCCTCTATTTTCTCA 57.576 36.000 0.00 0.00 0.00 3.27
128 129 9.418045 GTATCATGTAAGCTCCTCTATTTTCTC 57.582 37.037 0.00 0.00 0.00 2.87
129 130 8.928448 TGTATCATGTAAGCTCCTCTATTTTCT 58.072 33.333 0.00 0.00 0.00 2.52
130 131 9.547753 TTGTATCATGTAAGCTCCTCTATTTTC 57.452 33.333 0.00 0.00 0.00 2.29
131 132 9.553064 CTTGTATCATGTAAGCTCCTCTATTTT 57.447 33.333 0.00 0.00 0.00 1.82
132 133 8.153550 CCTTGTATCATGTAAGCTCCTCTATTT 58.846 37.037 0.00 0.00 0.00 1.40
133 134 7.510685 TCCTTGTATCATGTAAGCTCCTCTATT 59.489 37.037 0.00 0.00 0.00 1.73
134 135 7.013220 TCCTTGTATCATGTAAGCTCCTCTAT 58.987 38.462 0.00 0.00 0.00 1.98
135 136 6.373759 TCCTTGTATCATGTAAGCTCCTCTA 58.626 40.000 0.00 0.00 0.00 2.43
136 137 5.211973 TCCTTGTATCATGTAAGCTCCTCT 58.788 41.667 0.00 0.00 0.00 3.69
137 138 5.537300 TCCTTGTATCATGTAAGCTCCTC 57.463 43.478 0.00 0.00 0.00 3.71
138 139 5.957771 TTCCTTGTATCATGTAAGCTCCT 57.042 39.130 0.00 0.00 0.00 3.69
139 140 6.543831 ACATTTCCTTGTATCATGTAAGCTCC 59.456 38.462 0.00 0.00 0.00 4.70
140 141 7.559590 ACATTTCCTTGTATCATGTAAGCTC 57.440 36.000 0.00 0.00 0.00 4.09
141 142 9.632638 ATTACATTTCCTTGTATCATGTAAGCT 57.367 29.630 8.54 0.00 41.36 3.74
142 143 9.884465 GATTACATTTCCTTGTATCATGTAAGC 57.116 33.333 8.54 6.16 41.36 3.09
149 150 8.912988 GGGATTTGATTACATTTCCTTGTATCA 58.087 33.333 0.00 0.00 32.39 2.15
150 151 9.136323 AGGGATTTGATTACATTTCCTTGTATC 57.864 33.333 0.00 0.00 32.39 2.24
152 153 9.983024 TTAGGGATTTGATTACATTTCCTTGTA 57.017 29.630 0.00 0.00 31.95 2.41
153 154 8.893563 TTAGGGATTTGATTACATTTCCTTGT 57.106 30.769 0.00 0.00 31.95 3.16
180 181 4.279671 TGCACCACTCGTTTGGATATTTTT 59.720 37.500 11.38 0.00 39.24 1.94
181 182 3.823873 TGCACCACTCGTTTGGATATTTT 59.176 39.130 11.38 0.00 39.24 1.82
182 183 3.417101 TGCACCACTCGTTTGGATATTT 58.583 40.909 11.38 0.00 39.24 1.40
183 184 3.066291 TGCACCACTCGTTTGGATATT 57.934 42.857 11.38 0.00 39.24 1.28
184 185 2.747446 GTTGCACCACTCGTTTGGATAT 59.253 45.455 11.38 0.00 39.24 1.63
185 186 2.147958 GTTGCACCACTCGTTTGGATA 58.852 47.619 11.38 0.00 39.24 2.59
186 187 0.951558 GTTGCACCACTCGTTTGGAT 59.048 50.000 11.38 0.00 39.24 3.41
187 188 1.433053 CGTTGCACCACTCGTTTGGA 61.433 55.000 11.38 0.00 39.24 3.53
188 189 1.010125 CGTTGCACCACTCGTTTGG 60.010 57.895 3.82 3.82 43.04 3.28
189 190 1.654137 GCGTTGCACCACTCGTTTG 60.654 57.895 0.00 0.00 0.00 2.93
190 191 1.649390 TTGCGTTGCACCACTCGTTT 61.649 50.000 0.00 0.00 38.71 3.60
191 192 1.444119 ATTGCGTTGCACCACTCGTT 61.444 50.000 0.00 0.00 38.71 3.85
192 193 0.601576 TATTGCGTTGCACCACTCGT 60.602 50.000 0.00 0.00 38.71 4.18
193 194 0.179225 GTATTGCGTTGCACCACTCG 60.179 55.000 0.00 0.00 38.71 4.18
194 195 0.871722 TGTATTGCGTTGCACCACTC 59.128 50.000 0.00 0.00 38.71 3.51
195 196 0.874390 CTGTATTGCGTTGCACCACT 59.126 50.000 0.00 0.00 38.71 4.00
196 197 0.729140 GCTGTATTGCGTTGCACCAC 60.729 55.000 0.00 0.00 38.71 4.16
197 198 0.888736 AGCTGTATTGCGTTGCACCA 60.889 50.000 0.00 0.00 38.71 4.17
198 199 0.240945 AAGCTGTATTGCGTTGCACC 59.759 50.000 0.00 0.00 38.71 5.01
199 200 2.892373 TAAGCTGTATTGCGTTGCAC 57.108 45.000 0.00 0.00 38.71 4.57
200 201 5.749596 AATATAAGCTGTATTGCGTTGCA 57.250 34.783 4.34 0.00 38.13 4.08
201 202 5.336990 CGAAATATAAGCTGTATTGCGTTGC 59.663 40.000 18.02 0.00 36.36 4.17
202 203 5.845953 CCGAAATATAAGCTGTATTGCGTTG 59.154 40.000 21.75 10.65 38.38 4.10
203 204 5.756347 TCCGAAATATAAGCTGTATTGCGTT 59.244 36.000 21.75 3.90 38.38 4.84
204 205 5.176958 GTCCGAAATATAAGCTGTATTGCGT 59.823 40.000 21.75 4.16 38.38 5.24
205 206 5.405571 AGTCCGAAATATAAGCTGTATTGCG 59.594 40.000 18.81 18.81 39.29 4.85
206 207 6.787085 AGTCCGAAATATAAGCTGTATTGC 57.213 37.500 5.63 3.55 0.00 3.56
209 210 9.614792 AGAAAAAGTCCGAAATATAAGCTGTAT 57.385 29.630 0.00 0.00 0.00 2.29
210 211 9.095065 GAGAAAAAGTCCGAAATATAAGCTGTA 57.905 33.333 0.00 0.00 0.00 2.74
211 212 7.606456 TGAGAAAAAGTCCGAAATATAAGCTGT 59.394 33.333 0.00 0.00 0.00 4.40
212 213 7.974675 TGAGAAAAAGTCCGAAATATAAGCTG 58.025 34.615 0.00 0.00 0.00 4.24
213 214 8.561738 TTGAGAAAAAGTCCGAAATATAAGCT 57.438 30.769 0.00 0.00 0.00 3.74
214 215 9.620660 TTTTGAGAAAAAGTCCGAAATATAAGC 57.379 29.630 0.00 0.00 0.00 3.09
223 224 9.496873 TGTATAGATTTTTGAGAAAAAGTCCGA 57.503 29.630 0.00 0.00 42.97 4.55
224 225 9.543018 GTGTATAGATTTTTGAGAAAAAGTCCG 57.457 33.333 0.00 0.00 42.97 4.79
225 226 9.841880 GGTGTATAGATTTTTGAGAAAAAGTCC 57.158 33.333 0.00 0.00 42.97 3.85
241 242 8.750298 CCGTTCCTTGATATAAGGTGTATAGAT 58.250 37.037 5.67 0.00 38.55 1.98
242 243 7.946219 TCCGTTCCTTGATATAAGGTGTATAGA 59.054 37.037 5.67 0.00 38.55 1.98
243 244 8.118976 TCCGTTCCTTGATATAAGGTGTATAG 57.881 38.462 5.67 0.00 38.55 1.31
244 245 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
245 246 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
246 247 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
247 248 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
248 249 4.503296 CCCTCCGTTCCTTGATATAAGGTG 60.503 50.000 5.67 0.00 38.55 4.00
249 250 3.646637 CCCTCCGTTCCTTGATATAAGGT 59.353 47.826 5.67 0.00 38.55 3.50
250 251 3.901844 TCCCTCCGTTCCTTGATATAAGG 59.098 47.826 0.00 0.00 38.78 2.69
251 252 4.589374 ACTCCCTCCGTTCCTTGATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
252 253 4.553678 ACTCCCTCCGTTCCTTGATATAA 58.446 43.478 0.00 0.00 0.00 0.98
253 254 4.194678 ACTCCCTCCGTTCCTTGATATA 57.805 45.455 0.00 0.00 0.00 0.86
254 255 3.047695 ACTCCCTCCGTTCCTTGATAT 57.952 47.619 0.00 0.00 0.00 1.63
255 256 2.544844 ACTCCCTCCGTTCCTTGATA 57.455 50.000 0.00 0.00 0.00 2.15
256 257 2.544844 TACTCCCTCCGTTCCTTGAT 57.455 50.000 0.00 0.00 0.00 2.57
257 258 2.544844 ATACTCCCTCCGTTCCTTGA 57.455 50.000 0.00 0.00 0.00 3.02
258 259 3.705072 ACTTATACTCCCTCCGTTCCTTG 59.295 47.826 0.00 0.00 0.00 3.61
259 260 3.991683 ACTTATACTCCCTCCGTTCCTT 58.008 45.455 0.00 0.00 0.00 3.36
260 261 3.684408 ACTTATACTCCCTCCGTTCCT 57.316 47.619 0.00 0.00 0.00 3.36
261 262 4.261952 GCTAACTTATACTCCCTCCGTTCC 60.262 50.000 0.00 0.00 0.00 3.62
262 263 4.583907 AGCTAACTTATACTCCCTCCGTTC 59.416 45.833 0.00 0.00 0.00 3.95
263 264 4.341520 CAGCTAACTTATACTCCCTCCGTT 59.658 45.833 0.00 0.00 0.00 4.44
264 265 3.890147 CAGCTAACTTATACTCCCTCCGT 59.110 47.826 0.00 0.00 0.00 4.69
265 266 4.023021 GTCAGCTAACTTATACTCCCTCCG 60.023 50.000 0.00 0.00 0.00 4.63
266 267 4.023021 CGTCAGCTAACTTATACTCCCTCC 60.023 50.000 0.00 0.00 0.00 4.30
267 268 4.579753 ACGTCAGCTAACTTATACTCCCTC 59.420 45.833 0.00 0.00 0.00 4.30
268 269 4.534797 ACGTCAGCTAACTTATACTCCCT 58.465 43.478 0.00 0.00 0.00 4.20
269 270 4.915158 ACGTCAGCTAACTTATACTCCC 57.085 45.455 0.00 0.00 0.00 4.30
270 271 5.041940 CCAACGTCAGCTAACTTATACTCC 58.958 45.833 0.00 0.00 0.00 3.85
271 272 4.503370 GCCAACGTCAGCTAACTTATACTC 59.497 45.833 2.69 0.00 0.00 2.59
272 273 4.159879 AGCCAACGTCAGCTAACTTATACT 59.840 41.667 10.31 0.00 37.64 2.12
273 274 4.430908 AGCCAACGTCAGCTAACTTATAC 58.569 43.478 10.31 0.00 37.64 1.47
304 305 0.876399 TTTACGAAAAAGAGGCCGGC 59.124 50.000 21.18 21.18 0.00 6.13
308 309 9.170584 GCTCATATTATTTTACGAAAAAGAGGC 57.829 33.333 0.00 0.00 37.97 4.70
384 402 8.638685 ACTAAACATATGTTAACTCGCGTATT 57.361 30.769 21.07 4.26 37.25 1.89
389 407 9.298774 ACTTCTACTAAACATATGTTAACTCGC 57.701 33.333 21.07 0.00 37.25 5.03
442 460 9.997482 GTCACATATTGGATGTATTAACGTTTT 57.003 29.630 5.91 0.00 0.00 2.43
451 469 9.905713 GTATATTGGGTCACATATTGGATGTAT 57.094 33.333 0.00 0.00 0.00 2.29
474 492 9.826574 ACGTTATTACATCCAATGTGTAAGTAT 57.173 29.630 2.88 0.00 43.10 2.12
475 493 9.304731 GACGTTATTACATCCAATGTGTAAGTA 57.695 33.333 2.88 0.00 43.10 2.24
476 494 8.038944 AGACGTTATTACATCCAATGTGTAAGT 58.961 33.333 2.88 0.00 43.10 2.24
477 495 8.420374 AGACGTTATTACATCCAATGTGTAAG 57.580 34.615 2.88 0.00 43.10 2.34
478 496 8.661257 CAAGACGTTATTACATCCAATGTGTAA 58.339 33.333 2.88 1.73 44.60 2.41
479 497 7.201574 GCAAGACGTTATTACATCCAATGTGTA 60.202 37.037 2.88 0.00 44.60 2.90
480 498 6.403200 GCAAGACGTTATTACATCCAATGTGT 60.403 38.462 2.88 0.00 44.60 3.72
481 499 5.965334 GCAAGACGTTATTACATCCAATGTG 59.035 40.000 2.88 0.00 44.60 3.21
482 500 5.645929 TGCAAGACGTTATTACATCCAATGT 59.354 36.000 0.00 0.00 46.92 2.71
483 501 6.117911 TGCAAGACGTTATTACATCCAATG 57.882 37.500 0.00 0.00 0.00 2.82
484 502 6.238731 CCATGCAAGACGTTATTACATCCAAT 60.239 38.462 0.00 0.00 0.00 3.16
508 526 5.791303 ATAGTATAATACCCCCTTTGCCC 57.209 43.478 0.00 0.00 0.00 5.36
600 622 3.379057 TCCAAGAAGGTGAAAACGTTTCC 59.621 43.478 15.01 11.45 39.02 3.13
632 654 7.118496 TGTTTGGTTACATCATGAAAAAGGT 57.882 32.000 0.00 0.00 0.00 3.50
633 655 7.307337 GCTTGTTTGGTTACATCATGAAAAAGG 60.307 37.037 0.00 0.00 0.00 3.11
676 1298 3.455543 TGACTCATATTGTGGAGCCATGA 59.544 43.478 0.00 0.00 34.48 3.07
693 1315 3.334583 TTGCAGGGTATGAACTGACTC 57.665 47.619 0.00 0.00 36.86 3.36
715 1337 7.041098 AGCGTATTCTGAACTGACTGAATTTTT 60.041 33.333 0.00 0.00 38.60 1.94
716 1338 6.428159 AGCGTATTCTGAACTGACTGAATTTT 59.572 34.615 0.00 0.00 38.60 1.82
717 1339 5.934625 AGCGTATTCTGAACTGACTGAATTT 59.065 36.000 0.00 0.00 38.60 1.82
718 1340 5.482908 AGCGTATTCTGAACTGACTGAATT 58.517 37.500 0.00 0.00 38.60 2.17
719 1341 5.078411 AGCGTATTCTGAACTGACTGAAT 57.922 39.130 0.00 0.00 40.02 2.57
720 1342 4.521130 AGCGTATTCTGAACTGACTGAA 57.479 40.909 0.00 0.00 33.67 3.02
721 1343 4.237724 CAAGCGTATTCTGAACTGACTGA 58.762 43.478 0.00 0.00 0.00 3.41
722 1344 3.990469 ACAAGCGTATTCTGAACTGACTG 59.010 43.478 0.00 0.00 0.00 3.51
723 1345 4.238514 GACAAGCGTATTCTGAACTGACT 58.761 43.478 0.00 0.00 0.00 3.41
776 1398 6.835353 CGCATTATATGTTTTCGCAAATGTTG 59.165 34.615 0.00 0.00 0.00 3.33
778 1400 5.458452 CCGCATTATATGTTTTCGCAAATGT 59.542 36.000 0.00 0.00 0.00 2.71
798 1420 5.382616 TCTAAGAAGATATACTGACCCGCA 58.617 41.667 0.00 0.00 0.00 5.69
800 1422 7.316640 CCATTCTAAGAAGATATACTGACCCG 58.683 42.308 0.00 0.00 0.00 5.28
802 1424 7.600752 GTGCCATTCTAAGAAGATATACTGACC 59.399 40.741 0.00 0.00 0.00 4.02
860 1482 7.002250 TGGCATTTGAGGATGTCATTTAAAA 57.998 32.000 0.00 0.00 36.77 1.52
894 1516 4.994852 TGTAGTCTGTTAGGCACATTTGAC 59.005 41.667 0.00 0.00 33.76 3.18
901 1523 5.125739 AGTGATAGTGTAGTCTGTTAGGCAC 59.874 44.000 0.00 0.00 0.00 5.01
911 1533 8.082852 TGTTTTTCTCAGAGTGATAGTGTAGTC 58.917 37.037 0.00 0.00 0.00 2.59
951 1573 8.702819 GGTGTACTAGTGTTTCTTATTAGGGAT 58.297 37.037 5.39 0.00 0.00 3.85
952 1574 7.675195 TGGTGTACTAGTGTTTCTTATTAGGGA 59.325 37.037 5.39 0.00 0.00 4.20
953 1575 7.844009 TGGTGTACTAGTGTTTCTTATTAGGG 58.156 38.462 5.39 0.00 0.00 3.53
954 1576 9.715121 TTTGGTGTACTAGTGTTTCTTATTAGG 57.285 33.333 5.39 0.00 0.00 2.69
958 1580 9.654663 GATCTTTGGTGTACTAGTGTTTCTTAT 57.345 33.333 5.39 0.00 0.00 1.73
959 1581 8.867097 AGATCTTTGGTGTACTAGTGTTTCTTA 58.133 33.333 5.39 0.00 0.00 2.10
960 1582 7.736893 AGATCTTTGGTGTACTAGTGTTTCTT 58.263 34.615 5.39 0.00 0.00 2.52
966 1588 4.631813 GCCAAGATCTTTGGTGTACTAGTG 59.368 45.833 19.00 1.75 41.53 2.74
1060 1685 1.059006 AGGAGGCCATGGATCTGGTC 61.059 60.000 18.40 0.00 41.43 4.02
1205 1830 1.007038 TTGTAAAGAGCGGCGTCGT 60.007 52.632 12.58 0.00 38.89 4.34
1215 1840 2.276201 CGGATCATGGCGTTGTAAAGA 58.724 47.619 0.00 0.00 0.00 2.52
1218 1843 1.425267 CGCGGATCATGGCGTTGTAA 61.425 55.000 14.50 0.00 46.79 2.41
1585 2213 3.315521 CGGCATCGCGTCGAAGAG 61.316 66.667 5.77 0.00 39.99 2.85
1613 2241 1.071019 CATCGAGTTCCACGACACGG 61.071 60.000 0.00 0.00 42.37 4.94
1713 2341 1.517257 CCTCAGCATCGTCGTCCAC 60.517 63.158 0.00 0.00 0.00 4.02
1857 2485 2.507944 CATGGGAAGAGGCGGAGG 59.492 66.667 0.00 0.00 0.00 4.30
2064 2692 1.446099 GGTGAAGATGACGAGCGCA 60.446 57.895 11.47 0.00 0.00 6.09
2092 2720 2.665185 GGCGAACACGTCCTTGCT 60.665 61.111 5.77 0.00 0.00 3.91
2492 3126 2.669133 CCATCCTCCGACCAGCCAA 61.669 63.158 0.00 0.00 0.00 4.52
2576 3212 0.249073 CCGGATAAGTCAGTCAGCGG 60.249 60.000 0.00 0.00 0.00 5.52
2590 3226 3.454573 TAACACGCGAGCCCGGAT 61.455 61.111 15.93 0.00 36.06 4.18
2607 3323 2.573869 CTCGTCGACAGCCATGGT 59.426 61.111 17.16 0.00 0.00 3.55
2716 3439 1.179174 ATGGGCATCGTCTAGCGCTA 61.179 55.000 17.75 17.75 43.26 4.26
2725 3448 0.680921 CCAACTTCCATGGGCATCGT 60.681 55.000 13.02 0.00 34.15 3.73
2886 3651 3.084786 GCATACCTGAAAAGCCTCTTGT 58.915 45.455 0.00 0.00 0.00 3.16
2894 3660 3.334691 TGAACCGAGCATACCTGAAAAG 58.665 45.455 0.00 0.00 0.00 2.27
2898 3664 3.055458 TCAATTGAACCGAGCATACCTGA 60.055 43.478 5.45 0.00 0.00 3.86
2921 3687 1.333308 TCCATTTGTCAACGTGTGCAG 59.667 47.619 0.00 0.00 0.00 4.41
2927 3693 3.945285 ACAGTTCTTCCATTTGTCAACGT 59.055 39.130 0.00 0.00 0.00 3.99
2937 3703 2.447047 ACCTTTGGGACAGTTCTTCCAT 59.553 45.455 0.00 0.00 42.39 3.41
2938 3704 1.850345 ACCTTTGGGACAGTTCTTCCA 59.150 47.619 0.00 0.00 42.39 3.53
2939 3705 2.658807 ACCTTTGGGACAGTTCTTCC 57.341 50.000 0.00 0.00 42.39 3.46
2946 3712 1.472480 CGGCATAAACCTTTGGGACAG 59.528 52.381 0.00 0.00 42.39 3.51
2977 3743 1.609061 GGTGTCCTCTGTGGTGTGATG 60.609 57.143 0.00 0.00 37.07 3.07
2978 3744 0.687354 GGTGTCCTCTGTGGTGTGAT 59.313 55.000 0.00 0.00 37.07 3.06
2987 3753 2.952310 TCGAGTATGATGGTGTCCTCTG 59.048 50.000 0.00 0.00 0.00 3.35
2996 3762 2.477825 CCACTGCTTCGAGTATGATGG 58.522 52.381 0.00 0.00 0.00 3.51
3007 3773 1.181098 ACCATGTTGGCCACTGCTTC 61.181 55.000 3.88 0.00 42.67 3.86
3008 3774 1.152483 ACCATGTTGGCCACTGCTT 60.152 52.632 3.88 0.00 42.67 3.91
3009 3775 1.904865 CACCATGTTGGCCACTGCT 60.905 57.895 3.88 0.00 42.67 4.24
3010 3776 0.893270 TACACCATGTTGGCCACTGC 60.893 55.000 3.88 0.00 42.67 4.40
3012 3778 0.771127 AGTACACCATGTTGGCCACT 59.229 50.000 3.88 0.00 42.67 4.00
3014 3780 2.483014 GTAGTACACCATGTTGGCCA 57.517 50.000 0.00 0.00 42.67 5.36
3026 3924 9.286170 GATAGATATCAGTGACAAGGTAGTACA 57.714 37.037 5.32 0.00 32.98 2.90
3060 3958 0.534203 ATGGTCTTCACAAACGCCGT 60.534 50.000 0.00 0.00 0.00 5.68
3061 3959 1.434555 TATGGTCTTCACAAACGCCG 58.565 50.000 0.00 0.00 0.00 6.46
3062 3960 3.063997 CAGATATGGTCTTCACAAACGCC 59.936 47.826 0.00 0.00 34.00 5.68
3083 3982 1.265236 GTTTGTTGCCATGGGGATCA 58.735 50.000 15.13 0.00 35.59 2.92
3124 4023 9.710818 ACTTCACATCCTTCCTAGTTACTTATA 57.289 33.333 0.00 0.00 0.00 0.98
3125 4024 8.478877 CACTTCACATCCTTCCTAGTTACTTAT 58.521 37.037 0.00 0.00 0.00 1.73
3126 4025 7.093465 CCACTTCACATCCTTCCTAGTTACTTA 60.093 40.741 0.00 0.00 0.00 2.24
3127 4026 6.295916 CCACTTCACATCCTTCCTAGTTACTT 60.296 42.308 0.00 0.00 0.00 2.24
3130 4029 4.469945 CCCACTTCACATCCTTCCTAGTTA 59.530 45.833 0.00 0.00 0.00 2.24
3147 4050 1.675641 GCACTCGGAATGCCCACTT 60.676 57.895 0.00 0.00 37.08 3.16
3150 4053 2.268920 GAGCACTCGGAATGCCCA 59.731 61.111 7.94 0.00 44.53 5.36
3159 4062 2.888513 CAATGAGTTTGGAGCACTCG 57.111 50.000 0.00 0.00 43.26 4.18
3192 4095 0.764271 TCCCACATCACTGCAACTCA 59.236 50.000 0.00 0.00 0.00 3.41
3220 4123 3.118482 ACATGTCATTGGTTGCCACAAAA 60.118 39.130 0.00 0.00 30.78 2.44
3258 4165 3.740832 TCATCCGCATCATCGACAATTAC 59.259 43.478 0.00 0.00 0.00 1.89
3269 4176 2.192979 GCCCCTTCATCCGCATCA 59.807 61.111 0.00 0.00 0.00 3.07
3272 4179 4.802051 GCTGCCCCTTCATCCGCA 62.802 66.667 0.00 0.00 0.00 5.69
3317 4224 1.902508 TCTGGGATGTGAACTGGTCTC 59.097 52.381 0.00 0.00 0.00 3.36
3318 4225 2.030027 TCTGGGATGTGAACTGGTCT 57.970 50.000 0.00 0.00 0.00 3.85
3319 4226 2.224523 TGTTCTGGGATGTGAACTGGTC 60.225 50.000 0.00 0.00 41.99 4.02
3322 4229 3.743521 TCTTGTTCTGGGATGTGAACTG 58.256 45.455 0.00 0.00 41.99 3.16
3367 4277 5.647589 TCTTGAAGATTCTCATGCATTTGC 58.352 37.500 0.00 0.00 42.50 3.68
3368 4278 7.480810 TGATCTTGAAGATTCTCATGCATTTG 58.519 34.615 9.35 0.00 34.53 2.32
3370 4280 7.122204 TGTTGATCTTGAAGATTCTCATGCATT 59.878 33.333 9.35 0.00 34.53 3.56
3377 4287 6.315642 TGCATCTGTTGATCTTGAAGATTCTC 59.684 38.462 9.35 0.00 34.53 2.87
3378 4288 6.178324 TGCATCTGTTGATCTTGAAGATTCT 58.822 36.000 9.35 0.00 34.53 2.40
3379 4289 6.432607 TGCATCTGTTGATCTTGAAGATTC 57.567 37.500 9.35 3.76 34.53 2.52
3387 4297 5.942236 AGTTACACATGCATCTGTTGATCTT 59.058 36.000 13.04 0.00 0.00 2.40
3407 4317 6.953101 TGCTCACAAGATTATTGGGTAGTTA 58.047 36.000 0.00 0.00 0.00 2.24
3414 4324 8.671921 GTCCATATATGCTCACAAGATTATTGG 58.328 37.037 7.24 0.00 0.00 3.16
3417 4327 7.037370 TGGGTCCATATATGCTCACAAGATTAT 60.037 37.037 7.24 0.00 0.00 1.28
3430 4341 8.180706 TGATTTTCATTGTGGGTCCATATATG 57.819 34.615 5.68 5.68 0.00 1.78
3435 4346 5.543405 TCTTTGATTTTCATTGTGGGTCCAT 59.457 36.000 0.00 0.00 0.00 3.41
3512 4423 9.662947 ATCTACCATACACATGAATATCACATG 57.337 33.333 16.28 16.28 46.96 3.21
3525 4436 9.802039 TGTCATACACTATATCTACCATACACA 57.198 33.333 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.