Multiple sequence alignment - TraesCS1D01G354400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G354400 chr1D 100.000 2426 0 0 1 2426 439556364 439558789 0.000000e+00 4481.0
1 TraesCS1D01G354400 chr1D 95.504 1201 49 1 718 1913 439510942 439512142 0.000000e+00 1914.0
2 TraesCS1D01G354400 chr1D 98.481 395 6 0 1 395 439510184 439510578 0.000000e+00 697.0
3 TraesCS1D01G354400 chr1D 85.407 651 60 20 719 1351 440049689 440049056 0.000000e+00 643.0
4 TraesCS1D01G354400 chr1D 96.959 296 4 3 427 722 439510559 439510849 2.170000e-135 492.0
5 TraesCS1D01G354400 chr1D 77.806 392 64 8 1558 1932 470923632 470923247 1.130000e-53 220.0
6 TraesCS1D01G354400 chr1D 93.578 109 6 1 1983 2090 439512399 439512507 6.940000e-36 161.0
7 TraesCS1D01G354400 chr1D 77.551 245 38 10 1542 1772 49613973 49614214 5.440000e-27 132.0
8 TraesCS1D01G354400 chr1B 94.062 842 27 9 718 1539 596316240 596317078 0.000000e+00 1256.0
9 TraesCS1D01G354400 chr1B 89.546 727 33 15 1 722 596315459 596316147 0.000000e+00 881.0
10 TraesCS1D01G354400 chr1B 86.842 646 63 13 776 1405 597558443 597557804 0.000000e+00 702.0
11 TraesCS1D01G354400 chr1B 86.364 110 7 5 1949 2056 596317067 596317170 1.970000e-21 113.0
12 TraesCS1D01G354400 chr1A 94.564 791 30 8 718 1495 539279852 539279062 0.000000e+00 1210.0
13 TraesCS1D01G354400 chr1A 83.360 619 55 26 774 1351 537821041 537821652 1.650000e-146 529.0
14 TraesCS1D01G354400 chr1A 83.279 616 61 24 136 722 539280556 539279954 1.650000e-146 529.0
15 TraesCS1D01G354400 chr3D 98.214 336 6 0 2090 2425 343729343 343729008 2.690000e-164 588.0
16 TraesCS1D01G354400 chr3D 97.917 336 7 0 2091 2426 443744514 443744179 1.250000e-162 582.0
17 TraesCS1D01G354400 chr7D 97.917 336 7 0 2091 2426 428043695 428044030 1.250000e-162 582.0
18 TraesCS1D01G354400 chr7D 97.337 338 7 2 2091 2426 30890056 30889719 7.520000e-160 573.0
19 TraesCS1D01G354400 chr7D 83.505 388 57 6 1547 1932 606790440 606790058 2.970000e-94 355.0
20 TraesCS1D01G354400 chr6D 97.923 337 6 1 2090 2426 144044171 144043836 1.250000e-162 582.0
21 TraesCS1D01G354400 chr6D 97.085 343 9 1 2085 2426 454744784 454744442 5.820000e-161 577.0
22 TraesCS1D01G354400 chr6D 95.493 355 15 1 2073 2426 36359950 36359596 1.260000e-157 566.0
23 TraesCS1D01G354400 chr4D 97.923 337 6 1 2090 2426 41803903 41803568 1.250000e-162 582.0
24 TraesCS1D01G354400 chr4D 100.000 34 0 0 1069 1102 380295539 380295572 2.010000e-06 63.9
25 TraesCS1D01G354400 chr2D 97.917 336 7 0 2090 2425 634508922 634508587 1.250000e-162 582.0
26 TraesCS1D01G354400 chr2D 84.741 367 36 11 1574 1936 624316784 624317134 1.380000e-92 350.0
27 TraesCS1D01G354400 chr5D 83.548 389 60 2 1545 1932 443333263 443332878 6.380000e-96 361.0
28 TraesCS1D01G354400 chr2B 87.162 296 35 2 1544 1837 766236901 766237195 1.390000e-87 333.0
29 TraesCS1D01G354400 chr2B 84.337 83 10 2 1856 1936 56603576 56603657 7.190000e-11 78.7
30 TraesCS1D01G354400 chr4A 80.256 390 67 5 1552 1936 490592079 490592463 3.950000e-73 285.0
31 TraesCS1D01G354400 chr7A 79.124 388 71 6 1547 1929 699479410 699479792 2.390000e-65 259.0
32 TraesCS1D01G354400 chr7A 76.895 277 53 8 1636 1908 617691991 617692260 1.940000e-31 147.0
33 TraesCS1D01G354400 chr6A 83.193 238 33 5 1543 1776 25699435 25699201 6.800000e-51 211.0
34 TraesCS1D01G354400 chr5A 78.716 296 57 5 1644 1936 585395809 585395517 2.460000e-45 193.0
35 TraesCS1D01G354400 chrUn 85.542 83 9 2 1856 1936 474508900 474508981 1.550000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G354400 chr1D 439556364 439558789 2425 False 4481.0 4481 100.000000 1 2426 1 chr1D.!!$F2 2425
1 TraesCS1D01G354400 chr1D 439510184 439512507 2323 False 816.0 1914 96.130500 1 2090 4 chr1D.!!$F3 2089
2 TraesCS1D01G354400 chr1D 440049056 440049689 633 True 643.0 643 85.407000 719 1351 1 chr1D.!!$R1 632
3 TraesCS1D01G354400 chr1B 596315459 596317170 1711 False 750.0 1256 89.990667 1 2056 3 chr1B.!!$F1 2055
4 TraesCS1D01G354400 chr1B 597557804 597558443 639 True 702.0 702 86.842000 776 1405 1 chr1B.!!$R1 629
5 TraesCS1D01G354400 chr1A 539279062 539280556 1494 True 869.5 1210 88.921500 136 1495 2 chr1A.!!$R1 1359
6 TraesCS1D01G354400 chr1A 537821041 537821652 611 False 529.0 529 83.360000 774 1351 1 chr1A.!!$F1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
396 397 0.322816 GCCATGTGGTCAGTGTGGAT 60.323 55.0 0.35 0.0 37.57 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2164 0.03582 TTGGGGGTGTTCTACGCATC 60.036 55.0 0.0 0.0 43.54 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 2.111384 TGAGGACACTAAGAGGCATCC 58.889 52.381 0.00 0.00 0.00 3.51
170 171 9.631257 ATCCAATGATGTTAATGTGTCTATTCA 57.369 29.630 0.00 0.00 0.00 2.57
194 195 3.691575 TGGGATGCACCGAGAATTTAAA 58.308 40.909 0.00 0.00 40.11 1.52
311 312 4.889409 GCTTCTTGTTTCCCATATCCATCA 59.111 41.667 0.00 0.00 0.00 3.07
389 390 4.487948 CAACTTAAATGCCATGTGGTCAG 58.512 43.478 0.35 0.00 37.57 3.51
390 391 3.766545 ACTTAAATGCCATGTGGTCAGT 58.233 40.909 0.35 0.00 37.57 3.41
391 392 3.507233 ACTTAAATGCCATGTGGTCAGTG 59.493 43.478 0.35 0.00 37.57 3.66
392 393 1.999648 AAATGCCATGTGGTCAGTGT 58.000 45.000 0.35 0.00 37.57 3.55
393 394 1.250328 AATGCCATGTGGTCAGTGTG 58.750 50.000 0.35 0.00 37.57 3.82
394 395 0.609957 ATGCCATGTGGTCAGTGTGG 60.610 55.000 0.35 0.00 37.57 4.17
395 396 1.073025 GCCATGTGGTCAGTGTGGA 59.927 57.895 0.35 0.00 37.57 4.02
396 397 0.322816 GCCATGTGGTCAGTGTGGAT 60.323 55.000 0.35 0.00 37.57 3.41
397 398 1.742761 CCATGTGGTCAGTGTGGATC 58.257 55.000 0.00 0.00 31.59 3.36
398 399 1.679944 CCATGTGGTCAGTGTGGATCC 60.680 57.143 4.20 4.20 31.59 3.36
399 400 1.003464 CATGTGGTCAGTGTGGATCCA 59.997 52.381 11.44 11.44 0.00 3.41
400 401 0.396435 TGTGGTCAGTGTGGATCCAC 59.604 55.000 33.97 33.97 45.83 4.02
534 578 7.006509 CACATTATCATACCTCAGGGGAAAAT 58.993 38.462 0.00 0.00 38.76 1.82
726 877 4.624117 TCGGTGCGATCGCGATCC 62.624 66.667 36.16 29.46 45.51 3.36
740 891 1.605058 CGATCCCAACCACCGTCTCT 61.605 60.000 0.00 0.00 0.00 3.10
897 1073 2.779429 TGGGGATATAAGGTCCGTCA 57.221 50.000 0.00 0.00 36.58 4.35
1302 1528 0.834612 TCAGGGACACCAACGTCTTT 59.165 50.000 0.00 0.00 40.13 2.52
1610 1836 1.450312 CTTCCCTGGATGACACGCC 60.450 63.158 0.00 0.00 0.00 5.68
1651 1877 0.685458 ATCCTTCATGCAACAGGGGC 60.685 55.000 8.84 0.00 0.00 5.80
1671 1897 3.382546 GGCCATGCTTCTGAAACATATGT 59.617 43.478 1.41 1.41 0.00 2.29
1780 2011 2.570442 TTGCAACAAAACCTCGGTTC 57.430 45.000 1.16 0.00 37.35 3.62
1840 2071 2.200373 ACTGCAACAATACCTGGGTC 57.800 50.000 0.00 0.00 0.00 4.46
1843 2074 0.958382 GCAACAATACCTGGGTCGCA 60.958 55.000 0.00 0.00 0.00 5.10
1848 2079 2.009774 CAATACCTGGGTCGCAGAAAG 58.990 52.381 18.00 4.48 39.69 2.62
1852 2083 0.593128 CCTGGGTCGCAGAAAGTTTG 59.407 55.000 18.00 0.00 39.69 2.93
1875 2106 2.480224 CAACAAGACCTGTGTTGCAG 57.520 50.000 7.04 0.00 46.63 4.41
1913 2144 0.316522 CCGATCGATGTGGCAGATCT 59.683 55.000 18.66 4.66 38.78 2.75
1914 2145 1.416373 CGATCGATGTGGCAGATCTG 58.584 55.000 20.70 18.84 38.78 2.90
1915 2146 1.000938 CGATCGATGTGGCAGATCTGA 60.001 52.381 27.04 18.47 38.78 3.27
1916 2147 2.352519 CGATCGATGTGGCAGATCTGAT 60.353 50.000 27.04 22.15 38.78 2.90
1917 2148 2.521105 TCGATGTGGCAGATCTGATG 57.479 50.000 27.04 6.94 0.00 3.07
1918 2149 1.069668 TCGATGTGGCAGATCTGATGG 59.930 52.381 27.04 11.72 0.00 3.51
1919 2150 1.236628 GATGTGGCAGATCTGATGGC 58.763 55.000 27.04 13.23 43.16 4.40
1920 2151 0.844660 ATGTGGCAGATCTGATGGCT 59.155 50.000 27.04 4.38 43.25 4.75
1921 2152 0.179702 TGTGGCAGATCTGATGGCTC 59.820 55.000 27.04 13.53 43.25 4.70
1922 2153 0.879400 GTGGCAGATCTGATGGCTCG 60.879 60.000 27.04 0.00 43.25 5.03
1923 2154 1.960250 GGCAGATCTGATGGCTCGC 60.960 63.158 27.04 7.89 39.94 5.03
1924 2155 2.308769 GCAGATCTGATGGCTCGCG 61.309 63.158 27.04 0.00 0.00 5.87
1925 2156 1.361632 CAGATCTGATGGCTCGCGA 59.638 57.895 18.34 9.26 0.00 5.87
1926 2157 0.938637 CAGATCTGATGGCTCGCGAC 60.939 60.000 18.34 1.87 0.00 5.19
1927 2158 1.663074 GATCTGATGGCTCGCGACC 60.663 63.158 3.71 12.86 0.00 4.79
1928 2159 3.157217 ATCTGATGGCTCGCGACCC 62.157 63.158 13.71 13.71 0.00 4.46
1941 2172 4.944372 GACCCGGCGGATGCGTAG 62.944 72.222 30.79 11.41 44.10 3.51
1943 2174 4.215742 CCCGGCGGATGCGTAGAA 62.216 66.667 30.79 0.00 44.10 2.10
1944 2175 2.960129 CCGGCGGATGCGTAGAAC 60.960 66.667 24.41 0.00 44.10 3.01
1945 2176 2.202690 CGGCGGATGCGTAGAACA 60.203 61.111 8.84 0.00 44.10 3.18
1946 2177 2.514013 CGGCGGATGCGTAGAACAC 61.514 63.158 8.84 0.00 44.10 3.32
1947 2178 2.171725 GGCGGATGCGTAGAACACC 61.172 63.158 8.84 0.00 44.10 4.16
1948 2179 2.171725 GCGGATGCGTAGAACACCC 61.172 63.158 8.84 0.00 0.00 4.61
1949 2180 1.520787 CGGATGCGTAGAACACCCC 60.521 63.158 0.00 0.00 0.00 4.95
1950 2181 1.153229 GGATGCGTAGAACACCCCC 60.153 63.158 0.00 0.00 0.00 5.40
1951 2182 1.600107 GATGCGTAGAACACCCCCA 59.400 57.895 0.00 0.00 0.00 4.96
1952 2183 0.035820 GATGCGTAGAACACCCCCAA 60.036 55.000 0.00 0.00 0.00 4.12
1953 2184 0.402504 ATGCGTAGAACACCCCCAAA 59.597 50.000 0.00 0.00 0.00 3.28
1954 2185 0.183014 TGCGTAGAACACCCCCAAAA 59.817 50.000 0.00 0.00 0.00 2.44
1955 2186 1.320507 GCGTAGAACACCCCCAAAAA 58.679 50.000 0.00 0.00 0.00 1.94
2061 2480 5.566774 CGATTTTGTGTGAGAAGAATGAAGC 59.433 40.000 0.00 0.00 0.00 3.86
2063 2482 2.783135 TGTGTGAGAAGAATGAAGCCC 58.217 47.619 0.00 0.00 0.00 5.19
2084 2503 5.006386 CCCCAAGCTATAGATGGAAATGTC 58.994 45.833 20.77 0.00 36.27 3.06
2090 2509 2.988010 TAGATGGAAATGTCGCAGCT 57.012 45.000 0.00 0.00 0.00 4.24
2091 2510 1.376543 AGATGGAAATGTCGCAGCTG 58.623 50.000 10.11 10.11 0.00 4.24
2092 2511 1.089920 GATGGAAATGTCGCAGCTGT 58.910 50.000 16.64 0.00 0.00 4.40
2093 2512 1.470098 GATGGAAATGTCGCAGCTGTT 59.530 47.619 16.64 0.00 0.00 3.16
2094 2513 0.592637 TGGAAATGTCGCAGCTGTTG 59.407 50.000 16.64 8.71 0.00 3.33
2095 2514 0.109597 GGAAATGTCGCAGCTGTTGG 60.110 55.000 16.64 5.40 0.00 3.77
2096 2515 0.109597 GAAATGTCGCAGCTGTTGGG 60.110 55.000 16.64 2.12 40.88 4.12
2097 2516 0.823356 AAATGTCGCAGCTGTTGGGT 60.823 50.000 16.64 0.00 40.42 4.51
2098 2517 0.823356 AATGTCGCAGCTGTTGGGTT 60.823 50.000 16.64 2.87 40.42 4.11
2099 2518 0.036164 ATGTCGCAGCTGTTGGGTTA 59.964 50.000 16.64 0.00 40.42 2.85
2100 2519 0.882927 TGTCGCAGCTGTTGGGTTAC 60.883 55.000 16.64 3.49 40.42 2.50
2101 2520 1.666553 TCGCAGCTGTTGGGTTACG 60.667 57.895 16.64 7.67 40.42 3.18
2102 2521 1.959226 CGCAGCTGTTGGGTTACGT 60.959 57.895 16.64 0.00 35.17 3.57
2103 2522 0.668096 CGCAGCTGTTGGGTTACGTA 60.668 55.000 16.64 0.00 35.17 3.57
2104 2523 1.076332 GCAGCTGTTGGGTTACGTAG 58.924 55.000 16.64 0.00 0.00 3.51
2106 2525 2.353011 GCAGCTGTTGGGTTACGTAGTA 60.353 50.000 16.64 0.00 45.11 1.82
2134 2553 1.231221 AAAAATCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
2135 2554 0.796312 AAAATCCTACGCACACGCAG 59.204 50.000 0.00 0.00 45.53 5.18
2139 2558 3.693245 CTACGCACACGCAGGATC 58.307 61.111 0.00 0.00 45.53 3.36
2140 2559 1.153842 CTACGCACACGCAGGATCA 60.154 57.895 0.00 0.00 45.53 2.92
2141 2560 0.528466 CTACGCACACGCAGGATCAT 60.528 55.000 0.00 0.00 45.53 2.45
2142 2561 0.805711 TACGCACACGCAGGATCATG 60.806 55.000 2.22 2.22 45.53 3.07
2143 2562 2.816360 CGCACACGCAGGATCATGG 61.816 63.158 9.76 2.01 38.40 3.66
2144 2563 1.746615 GCACACGCAGGATCATGGT 60.747 57.895 9.76 2.66 38.36 3.55
2145 2564 1.985447 GCACACGCAGGATCATGGTG 61.985 60.000 20.27 20.27 38.36 4.17
2146 2565 0.391528 CACACGCAGGATCATGGTGA 60.392 55.000 25.47 0.00 33.08 4.02
2147 2566 0.543277 ACACGCAGGATCATGGTGAT 59.457 50.000 25.47 13.21 40.34 3.06
2148 2567 0.942252 CACGCAGGATCATGGTGATG 59.058 55.000 18.31 0.00 37.20 3.07
2149 2568 0.816825 ACGCAGGATCATGGTGATGC 60.817 55.000 9.76 3.59 44.29 3.91
2150 2569 0.816421 CGCAGGATCATGGTGATGCA 60.816 55.000 9.76 0.00 46.03 3.96
2151 2570 1.617322 GCAGGATCATGGTGATGCAT 58.383 50.000 9.76 0.00 46.03 3.96
2152 2571 2.786777 GCAGGATCATGGTGATGCATA 58.213 47.619 9.76 0.00 46.03 3.14
2153 2572 2.747989 GCAGGATCATGGTGATGCATAG 59.252 50.000 9.76 4.79 46.03 2.23
2154 2573 2.747989 CAGGATCATGGTGATGCATAGC 59.252 50.000 12.83 0.00 46.03 2.97
2155 2574 2.374170 AGGATCATGGTGATGCATAGCA 59.626 45.455 12.83 4.86 46.03 3.49
2156 2575 3.151554 GGATCATGGTGATGCATAGCAA 58.848 45.455 0.00 0.00 43.55 3.91
2157 2576 3.057736 GGATCATGGTGATGCATAGCAAC 60.058 47.826 0.00 0.00 43.55 4.17
2158 2577 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
2159 2578 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
2160 2579 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
2161 2580 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
2162 2581 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
2163 2582 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
2164 2583 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
2165 2584 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
2166 2585 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2167 2586 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2168 2587 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
2169 2588 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2170 2589 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
2171 2590 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
2172 2591 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
2173 2592 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
2174 2593 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
2175 2594 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
2176 2595 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
2177 2596 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
2178 2597 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
2179 2598 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
2180 2599 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
2181 2600 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
2182 2601 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
2183 2602 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
2184 2603 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
2185 2604 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
2186 2605 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
2187 2606 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
2188 2607 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
2189 2608 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
2190 2609 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
2191 2610 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2192 2611 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2193 2612 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2194 2613 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2195 2614 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2196 2615 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2197 2616 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2198 2617 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2199 2618 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2200 2619 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
2224 2643 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
2225 2644 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
2226 2645 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
2227 2646 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
2228 2647 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
2229 2648 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
2230 2649 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
2231 2650 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
2232 2651 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
2233 2652 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
2234 2653 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
2235 2654 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
2236 2655 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
2237 2656 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
2238 2657 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
2239 2658 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
2240 2659 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
2241 2660 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
2242 2661 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
2243 2662 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
2253 2672 4.379221 GTCTTCACGATCCGACCG 57.621 61.111 0.00 0.00 0.00 4.79
2254 2673 1.798735 GTCTTCACGATCCGACCGA 59.201 57.895 0.00 0.00 0.00 4.69
2255 2674 0.381089 GTCTTCACGATCCGACCGAT 59.619 55.000 0.00 0.00 0.00 4.18
2256 2675 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
2257 2676 0.380733 CTTCACGATCCGACCGATCA 59.619 55.000 0.00 0.00 46.85 2.92
2258 2677 0.812549 TTCACGATCCGACCGATCAA 59.187 50.000 0.00 0.00 46.85 2.57
2259 2678 0.380733 TCACGATCCGACCGATCAAG 59.619 55.000 0.00 0.00 46.85 3.02
2260 2679 0.100682 CACGATCCGACCGATCAAGT 59.899 55.000 0.00 0.00 46.85 3.16
2261 2680 1.332686 CACGATCCGACCGATCAAGTA 59.667 52.381 0.00 0.00 46.85 2.24
2262 2681 1.332997 ACGATCCGACCGATCAAGTAC 59.667 52.381 0.00 0.00 46.85 2.73
2263 2682 1.334779 CGATCCGACCGATCAAGTACC 60.335 57.143 4.93 0.00 46.85 3.34
2264 2683 0.666913 ATCCGACCGATCAAGTACCG 59.333 55.000 0.00 0.00 0.00 4.02
2265 2684 0.392863 TCCGACCGATCAAGTACCGA 60.393 55.000 0.00 0.00 0.00 4.69
2266 2685 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
2267 2686 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
2268 2687 1.542544 GACCGATCAAGTACCGAACG 58.457 55.000 5.81 5.81 0.00 3.95
2269 2688 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
2270 2689 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
2271 2690 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
2272 2691 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
2289 2708 2.435059 GGCACCTCCGAGTTCTGC 60.435 66.667 0.00 0.00 0.00 4.26
2290 2709 2.343758 GCACCTCCGAGTTCTGCA 59.656 61.111 0.00 0.00 0.00 4.41
2291 2710 2.029844 GCACCTCCGAGTTCTGCAC 61.030 63.158 0.00 0.00 0.00 4.57
2292 2711 1.367471 CACCTCCGAGTTCTGCACA 59.633 57.895 0.00 0.00 0.00 4.57
2293 2712 0.946221 CACCTCCGAGTTCTGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
2294 2713 1.734477 CCTCCGAGTTCTGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
2295 2714 1.007271 CTCCGAGTTCTGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
2296 2715 0.597637 CTCCGAGTTCTGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
2297 2716 0.596600 TCCGAGTTCTGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
2298 2717 0.874175 CCGAGTTCTGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
2299 2718 0.927537 CGAGTTCTGCACACGTTCAA 59.072 50.000 0.00 0.00 35.01 2.69
2300 2719 1.332028 CGAGTTCTGCACACGTTCAAC 60.332 52.381 0.00 0.00 35.01 3.18
2301 2720 1.933853 GAGTTCTGCACACGTTCAACT 59.066 47.619 0.00 0.00 0.00 3.16
2302 2721 1.933853 AGTTCTGCACACGTTCAACTC 59.066 47.619 0.00 0.00 0.00 3.01
2303 2722 0.927537 TTCTGCACACGTTCAACTCG 59.072 50.000 0.00 0.00 0.00 4.18
2304 2723 0.101579 TCTGCACACGTTCAACTCGA 59.898 50.000 0.00 0.00 0.00 4.04
2305 2724 1.139989 CTGCACACGTTCAACTCGAT 58.860 50.000 0.00 0.00 0.00 3.59
2306 2725 0.858583 TGCACACGTTCAACTCGATG 59.141 50.000 0.00 0.00 0.00 3.84
2307 2726 1.136690 GCACACGTTCAACTCGATGA 58.863 50.000 0.00 0.00 0.00 2.92
2308 2727 1.136611 GCACACGTTCAACTCGATGAC 60.137 52.381 0.00 0.00 0.00 3.06
2309 2728 1.122501 CACACGTTCAACTCGATGACG 59.877 52.381 0.00 8.47 41.26 4.35
2310 2729 1.268896 ACACGTTCAACTCGATGACGT 60.269 47.619 9.37 9.37 37.46 4.34
2311 2730 1.382419 CACGTTCAACTCGATGACGTC 59.618 52.381 9.11 9.11 36.02 4.34
2312 2731 0.982673 CGTTCAACTCGATGACGTCC 59.017 55.000 14.12 0.00 40.69 4.79
2313 2732 1.347320 GTTCAACTCGATGACGTCCC 58.653 55.000 14.12 3.95 40.69 4.46
2314 2733 1.067776 GTTCAACTCGATGACGTCCCT 60.068 52.381 14.12 0.00 40.69 4.20
2315 2734 0.809385 TCAACTCGATGACGTCCCTC 59.191 55.000 14.12 9.05 40.69 4.30
2316 2735 0.523546 CAACTCGATGACGTCCCTCG 60.524 60.000 23.88 23.88 46.00 4.63
2317 2736 0.675837 AACTCGATGACGTCCCTCGA 60.676 55.000 27.81 27.81 42.86 4.04
2318 2737 0.675837 ACTCGATGACGTCCCTCGAA 60.676 55.000 28.71 18.23 40.52 3.71
2319 2738 0.248134 CTCGATGACGTCCCTCGAAC 60.248 60.000 28.71 6.04 40.52 3.95
2320 2739 0.675837 TCGATGACGTCCCTCGAACT 60.676 55.000 27.70 0.60 42.86 3.01
2321 2740 0.248134 CGATGACGTCCCTCGAACTC 60.248 60.000 24.99 5.48 42.86 3.01
2322 2741 0.100861 GATGACGTCCCTCGAACTCC 59.899 60.000 14.12 0.00 42.86 3.85
2323 2742 1.654954 ATGACGTCCCTCGAACTCCG 61.655 60.000 14.12 0.00 42.86 4.63
2324 2743 2.033141 ACGTCCCTCGAACTCCGA 59.967 61.111 1.88 0.00 46.35 4.55
2331 2750 3.207354 TCGAACTCCGATCCAGCC 58.793 61.111 0.00 0.00 43.23 4.85
2332 2751 2.278857 CGAACTCCGATCCAGCCG 60.279 66.667 0.00 0.00 41.76 5.52
2333 2752 2.771639 CGAACTCCGATCCAGCCGA 61.772 63.158 0.00 0.00 41.76 5.54
2334 2753 1.066587 GAACTCCGATCCAGCCGAG 59.933 63.158 0.00 0.00 0.00 4.63
2335 2754 2.962697 GAACTCCGATCCAGCCGAGC 62.963 65.000 0.00 0.00 0.00 5.03
2336 2755 3.222855 CTCCGATCCAGCCGAGCT 61.223 66.667 0.00 0.00 40.77 4.09
2337 2756 2.759973 TCCGATCCAGCCGAGCTT 60.760 61.111 0.00 0.00 36.40 3.74
2338 2757 2.187946 CCGATCCAGCCGAGCTTT 59.812 61.111 0.00 0.00 36.40 3.51
2339 2758 2.176273 CCGATCCAGCCGAGCTTTG 61.176 63.158 0.00 0.00 36.40 2.77
2340 2759 1.153568 CGATCCAGCCGAGCTTTGA 60.154 57.895 0.00 0.00 36.40 2.69
2341 2760 1.150567 CGATCCAGCCGAGCTTTGAG 61.151 60.000 0.00 0.00 36.40 3.02
2342 2761 0.813210 GATCCAGCCGAGCTTTGAGG 60.813 60.000 0.00 0.00 36.40 3.86
2343 2762 2.262774 ATCCAGCCGAGCTTTGAGGG 62.263 60.000 0.00 0.00 36.40 4.30
2344 2763 2.665000 CAGCCGAGCTTTGAGGGA 59.335 61.111 0.00 0.00 36.40 4.20
2345 2764 1.449246 CAGCCGAGCTTTGAGGGAG 60.449 63.158 0.00 0.00 36.40 4.30
2346 2765 1.610673 AGCCGAGCTTTGAGGGAGA 60.611 57.895 0.00 0.00 33.89 3.71
2347 2766 1.153469 GCCGAGCTTTGAGGGAGAG 60.153 63.158 0.00 0.00 0.00 3.20
2348 2767 1.893919 GCCGAGCTTTGAGGGAGAGT 61.894 60.000 0.00 0.00 0.00 3.24
2349 2768 0.610687 CCGAGCTTTGAGGGAGAGTT 59.389 55.000 0.00 0.00 0.00 3.01
2350 2769 1.404851 CCGAGCTTTGAGGGAGAGTTC 60.405 57.143 0.00 0.00 0.00 3.01
2351 2770 1.404851 CGAGCTTTGAGGGAGAGTTCC 60.405 57.143 0.00 0.00 43.23 3.62
2352 2771 0.610687 AGCTTTGAGGGAGAGTTCCG 59.389 55.000 0.00 0.00 45.04 4.30
2353 2772 0.321996 GCTTTGAGGGAGAGTTCCGT 59.678 55.000 0.00 0.00 45.04 4.69
2357 2776 3.701454 AGGGAGAGTTCCGTCAGC 58.299 61.111 0.00 0.00 45.04 4.26
2358 2777 1.228894 AGGGAGAGTTCCGTCAGCA 60.229 57.895 0.00 0.00 45.04 4.41
2359 2778 1.079750 GGGAGAGTTCCGTCAGCAC 60.080 63.158 0.00 0.00 45.04 4.40
2360 2779 1.444553 GGAGAGTTCCGTCAGCACG 60.445 63.158 0.00 0.00 46.29 5.34
2369 2788 3.036084 GTCAGCACGACGGTGTGG 61.036 66.667 10.69 0.00 46.13 4.17
2373 2792 3.335534 GCACGACGGTGTGGTGAC 61.336 66.667 14.93 4.13 43.21 3.67
2374 2793 3.028019 CACGACGGTGTGGTGACG 61.028 66.667 6.26 0.00 43.21 4.35
2375 2794 3.211245 ACGACGGTGTGGTGACGA 61.211 61.111 0.00 0.00 0.00 4.20
2376 2795 2.257371 CGACGGTGTGGTGACGAT 59.743 61.111 0.00 0.00 0.00 3.73
2377 2796 1.372499 CGACGGTGTGGTGACGATT 60.372 57.895 0.00 0.00 0.00 3.34
2378 2797 0.109643 CGACGGTGTGGTGACGATTA 60.110 55.000 0.00 0.00 0.00 1.75
2379 2798 1.468565 CGACGGTGTGGTGACGATTAT 60.469 52.381 0.00 0.00 0.00 1.28
2380 2799 1.924524 GACGGTGTGGTGACGATTATG 59.075 52.381 0.00 0.00 0.00 1.90
2381 2800 1.546923 ACGGTGTGGTGACGATTATGA 59.453 47.619 0.00 0.00 0.00 2.15
2382 2801 2.167693 ACGGTGTGGTGACGATTATGAT 59.832 45.455 0.00 0.00 0.00 2.45
2383 2802 2.539688 CGGTGTGGTGACGATTATGATG 59.460 50.000 0.00 0.00 0.00 3.07
2384 2803 3.531538 GGTGTGGTGACGATTATGATGT 58.468 45.455 0.00 0.00 0.00 3.06
2385 2804 3.938963 GGTGTGGTGACGATTATGATGTT 59.061 43.478 0.00 0.00 0.00 2.71
2386 2805 4.034048 GGTGTGGTGACGATTATGATGTTC 59.966 45.833 0.00 0.00 0.00 3.18
2387 2806 4.870426 GTGTGGTGACGATTATGATGTTCT 59.130 41.667 0.00 0.00 0.00 3.01
2388 2807 6.040247 GTGTGGTGACGATTATGATGTTCTA 58.960 40.000 0.00 0.00 0.00 2.10
2389 2808 6.019801 GTGTGGTGACGATTATGATGTTCTAC 60.020 42.308 0.00 0.00 0.00 2.59
2390 2809 5.462398 GTGGTGACGATTATGATGTTCTACC 59.538 44.000 0.00 0.00 0.00 3.18
2391 2810 4.680110 GGTGACGATTATGATGTTCTACCG 59.320 45.833 0.00 0.00 0.00 4.02
2392 2811 5.506815 GGTGACGATTATGATGTTCTACCGA 60.507 44.000 0.00 0.00 0.00 4.69
2393 2812 5.398711 GTGACGATTATGATGTTCTACCGAC 59.601 44.000 0.00 0.00 0.00 4.79
2394 2813 4.534168 ACGATTATGATGTTCTACCGACG 58.466 43.478 0.00 0.00 0.00 5.12
2395 2814 3.361053 CGATTATGATGTTCTACCGACGC 59.639 47.826 0.00 0.00 0.00 5.19
2396 2815 3.786516 TTATGATGTTCTACCGACGCA 57.213 42.857 0.00 0.00 0.00 5.24
2397 2816 2.209838 ATGATGTTCTACCGACGCAG 57.790 50.000 0.00 0.00 0.00 5.18
2398 2817 0.172578 TGATGTTCTACCGACGCAGG 59.827 55.000 0.00 0.00 37.30 4.85
2399 2818 0.527817 GATGTTCTACCGACGCAGGG 60.528 60.000 1.73 0.00 35.02 4.45
2400 2819 2.508663 GTTCTACCGACGCAGGGC 60.509 66.667 1.73 0.00 35.02 5.19
2401 2820 2.678934 TTCTACCGACGCAGGGCT 60.679 61.111 1.73 0.00 35.02 5.19
2402 2821 2.280552 TTCTACCGACGCAGGGCTT 61.281 57.895 1.73 0.00 35.02 4.35
2403 2822 2.202756 CTACCGACGCAGGGCTTC 60.203 66.667 1.73 0.00 35.02 3.86
2404 2823 4.124351 TACCGACGCAGGGCTTCG 62.124 66.667 9.73 9.73 47.00 3.79
2417 2836 2.125512 CTTCGCCTAAGCACCGCT 60.126 61.111 0.00 0.00 42.56 5.52
2418 2837 1.141019 CTTCGCCTAAGCACCGCTA 59.859 57.895 0.00 0.00 38.25 4.26
2419 2838 1.146358 CTTCGCCTAAGCACCGCTAC 61.146 60.000 0.00 0.00 38.25 3.58
2420 2839 2.877360 TTCGCCTAAGCACCGCTACG 62.877 60.000 0.00 0.00 38.25 3.51
2421 2840 2.493030 GCCTAAGCACCGCTACGA 59.507 61.111 0.00 0.00 38.25 3.43
2422 2841 1.067582 GCCTAAGCACCGCTACGAT 59.932 57.895 0.00 0.00 38.25 3.73
2423 2842 0.313043 GCCTAAGCACCGCTACGATA 59.687 55.000 0.00 0.00 38.25 2.92
2424 2843 1.067776 GCCTAAGCACCGCTACGATAT 60.068 52.381 0.00 0.00 38.25 1.63
2425 2844 2.609737 GCCTAAGCACCGCTACGATATT 60.610 50.000 0.00 0.00 38.25 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.424626 CGCTCTGTCTTGCTATTCACTAA 58.575 43.478 0.00 0.00 0.00 2.24
170 171 2.442236 ATTCTCGGTGCATCCCATTT 57.558 45.000 0.00 0.00 0.00 2.32
194 195 3.243336 GAATTCGCTAACTGTCTGACGT 58.757 45.455 2.98 0.00 0.00 4.34
311 312 1.086696 CGAGGGCACAACGATGAAAT 58.913 50.000 0.00 0.00 0.00 2.17
389 390 6.746120 AGATTAATAGTACGTGGATCCACAC 58.254 40.000 37.42 29.55 46.47 3.82
390 391 6.971726 AGATTAATAGTACGTGGATCCACA 57.028 37.500 37.42 22.33 46.47 4.17
391 392 7.311408 GGTAGATTAATAGTACGTGGATCCAC 58.689 42.308 31.59 31.59 43.01 4.02
392 393 6.149973 CGGTAGATTAATAGTACGTGGATCCA 59.850 42.308 11.44 11.44 0.00 3.41
393 394 6.404074 CCGGTAGATTAATAGTACGTGGATCC 60.404 46.154 4.20 4.20 0.00 3.36
394 395 6.150140 ACCGGTAGATTAATAGTACGTGGATC 59.850 42.308 4.49 0.00 0.00 3.36
395 396 6.006449 ACCGGTAGATTAATAGTACGTGGAT 58.994 40.000 4.49 0.00 0.00 3.41
396 397 5.239306 CACCGGTAGATTAATAGTACGTGGA 59.761 44.000 6.87 0.00 0.00 4.02
397 398 5.455392 CACCGGTAGATTAATAGTACGTGG 58.545 45.833 6.87 11.84 0.00 4.94
398 399 4.913924 GCACCGGTAGATTAATAGTACGTG 59.086 45.833 6.87 0.72 0.00 4.49
399 400 4.580167 TGCACCGGTAGATTAATAGTACGT 59.420 41.667 6.87 0.00 0.00 3.57
400 401 4.913924 GTGCACCGGTAGATTAATAGTACG 59.086 45.833 6.87 0.00 0.00 3.67
534 578 0.321830 GGTACCGTGCCTGGCTTTTA 60.322 55.000 21.03 3.13 0.00 1.52
625 669 4.275936 AGCGCAGTTTCAAGACATAAAGTT 59.724 37.500 11.47 0.00 0.00 2.66
632 676 2.939756 TGTAAAGCGCAGTTTCAAGACA 59.060 40.909 11.47 0.66 0.00 3.41
726 877 2.317609 CGCAAGAGACGGTGGTTGG 61.318 63.158 0.00 0.00 43.02 3.77
740 891 2.873472 AGATCACGTAAACAAACCGCAA 59.127 40.909 0.00 0.00 0.00 4.85
882 1053 3.335579 GGCCATTGACGGACCTTATATC 58.664 50.000 0.00 0.00 0.00 1.63
897 1073 3.202001 CATTCGACCGCGGCCATT 61.202 61.111 28.58 4.99 38.28 3.16
1255 1481 4.796231 GACGTCCTCGGCGTGCAT 62.796 66.667 6.85 0.00 43.04 3.96
1302 1528 1.864862 GACGTCGACGAGGAAGTCA 59.135 57.895 41.52 0.00 42.55 3.41
1353 1579 3.322466 CCTTCACCGTCCCCAGCT 61.322 66.667 0.00 0.00 0.00 4.24
1582 1808 3.636231 CAGGGAAGGTGGCGGACA 61.636 66.667 0.00 0.00 0.00 4.02
1610 1836 2.103263 GGTACATAGGCCCTCACTTGAG 59.897 54.545 0.00 0.00 41.71 3.02
1651 1877 4.400251 ACCACATATGTTTCAGAAGCATGG 59.600 41.667 19.80 16.28 0.00 3.66
1671 1897 1.070914 TCGTAGACCATTGCAACACCA 59.929 47.619 0.00 0.00 0.00 4.17
1760 1991 2.223947 GGAACCGAGGTTTTGTTGCAAT 60.224 45.455 9.09 0.00 38.60 3.56
1821 2052 1.610624 CGACCCAGGTATTGTTGCAGT 60.611 52.381 0.00 0.00 0.00 4.40
1843 2074 3.429410 GGTCTTGTTGCAGCAAACTTTCT 60.429 43.478 17.06 0.00 0.00 2.52
1848 2079 1.134946 ACAGGTCTTGTTGCAGCAAAC 59.865 47.619 17.06 15.94 36.31 2.93
1852 2083 0.740737 AACACAGGTCTTGTTGCAGC 59.259 50.000 0.00 0.00 38.16 5.25
1872 2103 2.359230 GAGTGCCTCCACCACTGC 60.359 66.667 0.00 0.00 43.17 4.40
1875 2106 1.294780 CAGAGAGTGCCTCCACCAC 59.705 63.158 0.00 0.00 43.09 4.16
1924 2155 4.944372 CTACGCATCCGCCGGGTC 62.944 72.222 1.90 0.00 38.22 4.46
1926 2157 4.215742 TTCTACGCATCCGCCGGG 62.216 66.667 1.90 0.00 38.22 5.73
1927 2158 2.960129 GTTCTACGCATCCGCCGG 60.960 66.667 0.00 0.00 38.22 6.13
1928 2159 2.202690 TGTTCTACGCATCCGCCG 60.203 61.111 0.00 0.00 38.22 6.46
1929 2160 2.171725 GGTGTTCTACGCATCCGCC 61.172 63.158 0.00 0.00 38.22 6.13
1930 2161 2.171725 GGGTGTTCTACGCATCCGC 61.172 63.158 0.00 0.00 41.54 5.54
1931 2162 1.520787 GGGGTGTTCTACGCATCCG 60.521 63.158 0.00 0.00 43.54 4.18
1932 2163 1.153229 GGGGGTGTTCTACGCATCC 60.153 63.158 0.00 0.00 43.54 3.51
1933 2164 0.035820 TTGGGGGTGTTCTACGCATC 60.036 55.000 0.00 0.00 43.54 3.91
1934 2165 0.402504 TTTGGGGGTGTTCTACGCAT 59.597 50.000 0.00 0.00 43.54 4.73
1935 2166 0.183014 TTTTGGGGGTGTTCTACGCA 59.817 50.000 0.00 0.00 43.54 5.24
1936 2167 1.320507 TTTTTGGGGGTGTTCTACGC 58.679 50.000 0.00 0.00 41.21 4.42
1954 2185 5.443230 AGAGCAGAGCTAATAGGGTTTTT 57.557 39.130 0.00 0.00 39.88 1.94
1955 2186 5.443230 AAGAGCAGAGCTAATAGGGTTTT 57.557 39.130 0.00 0.00 39.88 2.43
1956 2187 5.443230 AAAGAGCAGAGCTAATAGGGTTT 57.557 39.130 0.00 0.00 39.88 3.27
1957 2188 5.443230 AAAAGAGCAGAGCTAATAGGGTT 57.557 39.130 0.00 0.00 39.88 4.11
1958 2189 5.443230 AAAAAGAGCAGAGCTAATAGGGT 57.557 39.130 0.00 0.00 39.88 4.34
1989 2408 1.134367 CTGAGGAATACCGAGTTCGCA 59.866 52.381 0.00 0.00 41.83 5.10
2061 2480 4.990526 ACATTTCCATCTATAGCTTGGGG 58.009 43.478 16.91 9.81 0.00 4.96
2063 2482 4.153117 GCGACATTTCCATCTATAGCTTGG 59.847 45.833 12.88 12.88 0.00 3.61
2084 2503 0.668096 TACGTAACCCAACAGCTGCG 60.668 55.000 15.27 9.13 0.00 5.18
2090 2509 7.798596 TTTGAAATTACTACGTAACCCAACA 57.201 32.000 0.00 0.00 30.49 3.33
2115 2534 1.196808 CTGCGTGTGCGTAGGATTTTT 59.803 47.619 0.00 0.00 45.01 1.94
2116 2535 0.796312 CTGCGTGTGCGTAGGATTTT 59.204 50.000 0.00 0.00 45.01 1.82
2117 2536 2.456000 CTGCGTGTGCGTAGGATTT 58.544 52.632 0.00 0.00 45.01 2.17
2118 2537 4.185413 CTGCGTGTGCGTAGGATT 57.815 55.556 0.00 0.00 45.01 3.01
2126 2545 1.746615 ACCATGATCCTGCGTGTGC 60.747 57.895 0.00 0.00 43.20 4.57
2127 2546 0.391528 TCACCATGATCCTGCGTGTG 60.392 55.000 14.49 8.57 0.00 3.82
2128 2547 0.543277 ATCACCATGATCCTGCGTGT 59.457 50.000 14.49 0.00 29.59 4.49
2129 2548 0.942252 CATCACCATGATCCTGCGTG 59.058 55.000 0.00 10.98 34.28 5.34
2130 2549 0.816825 GCATCACCATGATCCTGCGT 60.817 55.000 0.00 0.00 34.28 5.24
2131 2550 0.816421 TGCATCACCATGATCCTGCG 60.816 55.000 0.00 0.00 34.28 5.18
2132 2551 1.617322 ATGCATCACCATGATCCTGC 58.383 50.000 0.00 0.00 34.28 4.85
2133 2552 2.747989 GCTATGCATCACCATGATCCTG 59.252 50.000 0.19 0.00 34.28 3.86
2134 2553 2.374170 TGCTATGCATCACCATGATCCT 59.626 45.455 0.19 0.00 34.28 3.24
2135 2554 2.786777 TGCTATGCATCACCATGATCC 58.213 47.619 0.19 0.00 34.28 3.36
2136 2555 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
2137 2556 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
2138 2557 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
2139 2558 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
2140 2559 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
2141 2560 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
2142 2561 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
2143 2562 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
2144 2563 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
2145 2564 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
2146 2565 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
2147 2566 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
2148 2567 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2149 2568 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
2150 2569 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2151 2570 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
2152 2571 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
2153 2572 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
2154 2573 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
2155 2574 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
2156 2575 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
2157 2576 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
2158 2577 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
2159 2578 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
2160 2579 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
2161 2580 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
2162 2581 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
2163 2582 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
2164 2583 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
2165 2584 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
2166 2585 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
2167 2586 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
2168 2587 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
2169 2588 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
2170 2589 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
2171 2590 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
2172 2591 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2173 2592 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2175 2594 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
2193 2612 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
2194 2613 0.179222 GTGCTAACGCTTCCGCTTTC 60.179 55.000 0.00 0.00 38.22 2.62
2195 2614 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
2196 2615 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
2197 2616 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
2198 2617 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
2199 2618 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
2205 2624 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
2206 2625 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
2207 2626 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
2208 2627 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
2209 2628 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
2210 2629 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
2211 2630 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
2212 2631 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
2213 2632 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
2214 2633 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
2215 2634 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
2216 2635 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
2217 2636 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
2218 2637 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
2219 2638 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
2220 2639 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
2221 2640 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
2222 2641 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
2223 2642 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
2224 2643 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
2225 2644 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
2231 2650 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.000 15.01 15.01 46.20 3.67
2232 2651 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
2233 2652 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
2234 2653 1.505353 GGTCGGATCGTGAAGACGT 59.495 57.895 0.00 0.00 46.20 4.34
2236 2655 0.381089 ATCGGTCGGATCGTGAAGAC 59.619 55.000 10.85 0.00 0.00 3.01
2237 2656 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
2238 2657 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
2245 2664 0.666913 CGGTACTTGATCGGTCGGAT 59.333 55.000 0.00 0.00 38.35 4.18
2246 2665 0.392863 TCGGTACTTGATCGGTCGGA 60.393 55.000 0.00 0.00 30.29 4.55
2247 2666 0.452987 TTCGGTACTTGATCGGTCGG 59.547 55.000 0.00 0.00 30.29 4.79
2248 2667 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
2249 2668 1.542544 CGTTCGGTACTTGATCGGTC 58.457 55.000 9.70 0.00 30.29 4.79
2250 2669 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
2251 2670 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
2252 2671 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
2253 2672 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
2254 2673 0.734942 CCGTGCGTTCGGTACTTGAT 60.735 55.000 11.17 0.00 44.77 2.57
2255 2674 1.372004 CCGTGCGTTCGGTACTTGA 60.372 57.895 11.17 0.00 44.77 3.02
2256 2675 3.152703 CCGTGCGTTCGGTACTTG 58.847 61.111 11.17 0.00 44.77 3.16
2272 2691 2.435059 GCAGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
2273 2692 2.029844 GTGCAGAACTCGGAGGTGC 61.030 63.158 17.45 17.45 34.62 5.01
2274 2693 0.946221 GTGTGCAGAACTCGGAGGTG 60.946 60.000 10.23 5.07 0.00 4.00
2275 2694 1.367840 GTGTGCAGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
2276 2695 1.734477 CGTGTGCAGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
2277 2696 3.848142 CGTGTGCAGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
2281 2700 1.933853 AGTTGAACGTGTGCAGAACTC 59.066 47.619 0.00 0.00 0.00 3.01
2282 2701 1.933853 GAGTTGAACGTGTGCAGAACT 59.066 47.619 0.00 0.00 0.00 3.01
2283 2702 1.332028 CGAGTTGAACGTGTGCAGAAC 60.332 52.381 0.00 0.00 0.00 3.01
2284 2703 0.927537 CGAGTTGAACGTGTGCAGAA 59.072 50.000 0.00 0.00 0.00 3.02
2285 2704 0.101579 TCGAGTTGAACGTGTGCAGA 59.898 50.000 0.00 0.00 0.00 4.26
2286 2705 1.136529 CATCGAGTTGAACGTGTGCAG 60.137 52.381 0.00 0.00 0.00 4.41
2287 2706 0.858583 CATCGAGTTGAACGTGTGCA 59.141 50.000 0.00 0.00 0.00 4.57
2288 2707 1.136611 GTCATCGAGTTGAACGTGTGC 60.137 52.381 0.00 0.00 0.00 4.57
2289 2708 1.122501 CGTCATCGAGTTGAACGTGTG 59.877 52.381 0.00 0.00 39.71 3.82
2290 2709 1.268896 ACGTCATCGAGTTGAACGTGT 60.269 47.619 9.03 0.00 40.62 4.49
2291 2710 1.382419 GACGTCATCGAGTTGAACGTG 59.618 52.381 13.67 0.00 40.62 4.49
2292 2711 1.665161 GGACGTCATCGAGTTGAACGT 60.665 52.381 18.91 9.51 40.62 3.99
2293 2712 0.982673 GGACGTCATCGAGTTGAACG 59.017 55.000 18.91 3.52 40.62 3.95
2294 2713 1.067776 AGGGACGTCATCGAGTTGAAC 60.068 52.381 18.91 0.00 40.62 3.18
2295 2714 1.201647 GAGGGACGTCATCGAGTTGAA 59.798 52.381 18.91 0.00 40.62 2.69
2296 2715 0.809385 GAGGGACGTCATCGAGTTGA 59.191 55.000 18.91 0.00 40.62 3.18
2297 2716 0.523546 CGAGGGACGTCATCGAGTTG 60.524 60.000 28.32 6.92 38.72 3.16
2298 2717 0.675837 TCGAGGGACGTCATCGAGTT 60.676 55.000 29.82 5.45 40.29 3.01
2299 2718 0.675837 TTCGAGGGACGTCATCGAGT 60.676 55.000 30.77 7.51 45.23 4.18
2300 2719 0.248134 GTTCGAGGGACGTCATCGAG 60.248 60.000 30.77 16.93 45.23 4.04
2301 2720 0.675837 AGTTCGAGGGACGTCATCGA 60.676 55.000 29.82 29.82 43.19 3.59
2302 2721 0.248134 GAGTTCGAGGGACGTCATCG 60.248 60.000 27.08 27.08 43.13 3.84
2303 2722 0.100861 GGAGTTCGAGGGACGTCATC 59.899 60.000 18.91 13.48 43.13 2.92
2304 2723 1.654954 CGGAGTTCGAGGGACGTCAT 61.655 60.000 18.91 4.87 42.43 3.06
2305 2724 2.330372 CGGAGTTCGAGGGACGTCA 61.330 63.158 18.91 0.00 42.43 4.35
2306 2725 2.037136 TCGGAGTTCGAGGGACGTC 61.037 63.158 7.13 7.13 43.74 4.34
2307 2726 2.033141 TCGGAGTTCGAGGGACGT 59.967 61.111 0.00 0.00 43.74 4.34
2315 2734 2.278857 CGGCTGGATCGGAGTTCG 60.279 66.667 0.00 0.00 40.90 3.95
2316 2735 1.066587 CTCGGCTGGATCGGAGTTC 59.933 63.158 0.00 0.00 0.00 3.01
2317 2736 3.082579 GCTCGGCTGGATCGGAGTT 62.083 63.158 0.00 0.00 36.27 3.01
2318 2737 3.532155 GCTCGGCTGGATCGGAGT 61.532 66.667 0.00 0.00 36.27 3.85
2319 2738 2.303549 AAAGCTCGGCTGGATCGGAG 62.304 60.000 0.00 0.00 39.62 4.63
2320 2739 2.359169 AAAGCTCGGCTGGATCGGA 61.359 57.895 0.00 0.00 39.62 4.55
2321 2740 2.176273 CAAAGCTCGGCTGGATCGG 61.176 63.158 0.00 0.00 39.62 4.18
2322 2741 1.150567 CTCAAAGCTCGGCTGGATCG 61.151 60.000 0.00 0.00 39.62 3.69
2323 2742 0.813210 CCTCAAAGCTCGGCTGGATC 60.813 60.000 0.00 0.00 39.62 3.36
2324 2743 1.222936 CCTCAAAGCTCGGCTGGAT 59.777 57.895 0.00 0.00 39.62 3.41
2325 2744 2.665000 CCTCAAAGCTCGGCTGGA 59.335 61.111 0.00 0.94 39.62 3.86
2326 2745 2.437359 CCCTCAAAGCTCGGCTGG 60.437 66.667 0.00 0.00 39.62 4.85
2327 2746 1.449246 CTCCCTCAAAGCTCGGCTG 60.449 63.158 0.00 0.00 39.62 4.85
2328 2747 1.610673 TCTCCCTCAAAGCTCGGCT 60.611 57.895 0.00 0.00 42.56 5.52
2329 2748 1.153469 CTCTCCCTCAAAGCTCGGC 60.153 63.158 0.00 0.00 0.00 5.54
2330 2749 0.610687 AACTCTCCCTCAAAGCTCGG 59.389 55.000 0.00 0.00 0.00 4.63
2331 2750 1.404851 GGAACTCTCCCTCAAAGCTCG 60.405 57.143 0.00 0.00 35.42 5.03
2332 2751 1.404851 CGGAACTCTCCCTCAAAGCTC 60.405 57.143 0.00 0.00 38.71 4.09
2333 2752 0.610687 CGGAACTCTCCCTCAAAGCT 59.389 55.000 0.00 0.00 38.71 3.74
2334 2753 0.321996 ACGGAACTCTCCCTCAAAGC 59.678 55.000 0.00 0.00 38.71 3.51
2335 2754 1.618837 TGACGGAACTCTCCCTCAAAG 59.381 52.381 0.00 0.00 38.71 2.77
2336 2755 1.618837 CTGACGGAACTCTCCCTCAAA 59.381 52.381 0.00 0.00 36.63 2.69
2337 2756 1.257743 CTGACGGAACTCTCCCTCAA 58.742 55.000 0.00 0.00 36.63 3.02
2338 2757 1.251527 GCTGACGGAACTCTCCCTCA 61.252 60.000 0.00 0.00 38.71 3.86
2339 2758 1.251527 TGCTGACGGAACTCTCCCTC 61.252 60.000 0.00 0.00 38.71 4.30
2340 2759 1.228894 TGCTGACGGAACTCTCCCT 60.229 57.895 0.00 0.00 38.71 4.20
2341 2760 1.079750 GTGCTGACGGAACTCTCCC 60.080 63.158 0.00 0.00 38.71 4.30
2342 2761 1.444553 CGTGCTGACGGAACTCTCC 60.445 63.158 0.00 0.00 42.18 3.71
2343 2762 0.729816 GTCGTGCTGACGGAACTCTC 60.730 60.000 0.00 0.00 46.11 3.20
2344 2763 1.286260 GTCGTGCTGACGGAACTCT 59.714 57.895 0.00 0.00 46.11 3.24
2345 2764 3.843985 GTCGTGCTGACGGAACTC 58.156 61.111 0.00 0.00 46.11 3.01
2352 2771 3.036084 CCACACCGTCGTGCTGAC 61.036 66.667 0.00 0.20 44.40 3.51
2353 2772 3.533105 ACCACACCGTCGTGCTGA 61.533 61.111 0.00 0.00 44.40 4.26
2354 2773 3.337889 CACCACACCGTCGTGCTG 61.338 66.667 0.00 0.00 44.40 4.41
2355 2774 3.533105 TCACCACACCGTCGTGCT 61.533 61.111 0.00 0.00 44.40 4.40
2356 2775 3.335534 GTCACCACACCGTCGTGC 61.336 66.667 0.00 0.00 44.40 5.34
2357 2776 2.742710 ATCGTCACCACACCGTCGTG 62.743 60.000 0.00 0.00 46.11 4.35
2358 2777 2.079020 AATCGTCACCACACCGTCGT 62.079 55.000 0.00 0.00 0.00 4.34
2359 2778 0.109643 TAATCGTCACCACACCGTCG 60.110 55.000 0.00 0.00 0.00 5.12
2360 2779 1.924524 CATAATCGTCACCACACCGTC 59.075 52.381 0.00 0.00 0.00 4.79
2361 2780 1.546923 TCATAATCGTCACCACACCGT 59.453 47.619 0.00 0.00 0.00 4.83
2362 2781 2.287393 TCATAATCGTCACCACACCG 57.713 50.000 0.00 0.00 0.00 4.94
2363 2782 3.531538 ACATCATAATCGTCACCACACC 58.468 45.455 0.00 0.00 0.00 4.16
2364 2783 4.870426 AGAACATCATAATCGTCACCACAC 59.130 41.667 0.00 0.00 0.00 3.82
2365 2784 5.084818 AGAACATCATAATCGTCACCACA 57.915 39.130 0.00 0.00 0.00 4.17
2366 2785 5.462398 GGTAGAACATCATAATCGTCACCAC 59.538 44.000 0.00 0.00 0.00 4.16
2367 2786 5.597806 GGTAGAACATCATAATCGTCACCA 58.402 41.667 0.00 0.00 0.00 4.17
2368 2787 4.680110 CGGTAGAACATCATAATCGTCACC 59.320 45.833 0.00 0.00 0.00 4.02
2369 2788 5.398711 GTCGGTAGAACATCATAATCGTCAC 59.601 44.000 0.00 0.00 0.00 3.67
2370 2789 5.516996 GTCGGTAGAACATCATAATCGTCA 58.483 41.667 0.00 0.00 0.00 4.35
2371 2790 4.611782 CGTCGGTAGAACATCATAATCGTC 59.388 45.833 0.00 0.00 0.00 4.20
2372 2791 4.534168 CGTCGGTAGAACATCATAATCGT 58.466 43.478 0.00 0.00 0.00 3.73
2373 2792 3.361053 GCGTCGGTAGAACATCATAATCG 59.639 47.826 0.00 0.00 0.00 3.34
2374 2793 4.295870 TGCGTCGGTAGAACATCATAATC 58.704 43.478 0.00 0.00 0.00 1.75
2375 2794 4.299155 CTGCGTCGGTAGAACATCATAAT 58.701 43.478 0.00 0.00 0.00 1.28
2376 2795 3.490249 CCTGCGTCGGTAGAACATCATAA 60.490 47.826 0.00 0.00 0.00 1.90
2377 2796 2.034179 CCTGCGTCGGTAGAACATCATA 59.966 50.000 0.00 0.00 0.00 2.15
2378 2797 1.202417 CCTGCGTCGGTAGAACATCAT 60.202 52.381 0.00 0.00 0.00 2.45
2379 2798 0.172578 CCTGCGTCGGTAGAACATCA 59.827 55.000 0.00 0.00 0.00 3.07
2380 2799 0.527817 CCCTGCGTCGGTAGAACATC 60.528 60.000 0.00 0.00 0.00 3.06
2381 2800 1.515954 CCCTGCGTCGGTAGAACAT 59.484 57.895 0.00 0.00 0.00 2.71
2382 2801 2.967397 CCCTGCGTCGGTAGAACA 59.033 61.111 0.00 0.00 0.00 3.18
2383 2802 2.502692 AAGCCCTGCGTCGGTAGAAC 62.503 60.000 0.00 0.00 0.00 3.01
2384 2803 2.221906 GAAGCCCTGCGTCGGTAGAA 62.222 60.000 0.00 0.00 0.00 2.10
2385 2804 2.678934 AAGCCCTGCGTCGGTAGA 60.679 61.111 0.00 0.00 0.00 2.59
2386 2805 2.202756 GAAGCCCTGCGTCGGTAG 60.203 66.667 0.00 0.00 0.00 3.18
2400 2819 1.141019 TAGCGGTGCTTAGGCGAAG 59.859 57.895 2.68 2.68 40.44 3.79
2401 2820 1.153706 GTAGCGGTGCTTAGGCGAA 60.154 57.895 0.00 0.00 40.44 4.70
2402 2821 2.493030 GTAGCGGTGCTTAGGCGA 59.507 61.111 0.00 0.00 40.44 5.54
2403 2822 2.679132 ATCGTAGCGGTGCTTAGGCG 62.679 60.000 0.00 0.00 40.44 5.52
2404 2823 0.313043 TATCGTAGCGGTGCTTAGGC 59.687 55.000 0.00 0.00 40.44 3.93
2405 2824 3.299340 AATATCGTAGCGGTGCTTAGG 57.701 47.619 0.00 0.00 40.44 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.