Multiple sequence alignment - TraesCS1D01G353900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G353900 chr1D 100.000 6267 0 0 1 6267 439340263 439346529 0.000000e+00 11574.0
1 TraesCS1D01G353900 chr1D 86.957 230 8 7 6051 6259 64328071 64328299 8.120000e-59 239.0
2 TraesCS1D01G353900 chr1D 86.522 230 7 5 6051 6259 96067718 96067492 1.360000e-56 231.0
3 TraesCS1D01G353900 chr1D 83.673 245 32 6 2517 2758 179670218 179669979 2.270000e-54 224.0
4 TraesCS1D01G353900 chr1D 88.525 183 13 7 5803 5980 9572921 9573100 1.370000e-51 215.0
5 TraesCS1D01G353900 chr1B 96.331 2535 57 7 2191 4697 596160514 596163040 0.000000e+00 4133.0
6 TraesCS1D01G353900 chr1B 95.867 992 20 3 4696 5666 596163192 596164183 0.000000e+00 1585.0
7 TraesCS1D01G353900 chr1B 94.024 502 28 1 1 502 515444962 515444463 0.000000e+00 760.0
8 TraesCS1D01G353900 chr1B 93.810 420 16 7 1669 2078 596159753 596160172 1.920000e-174 623.0
9 TraesCS1D01G353900 chr1B 89.979 479 42 4 1146 1622 596159276 596159750 1.150000e-171 614.0
10 TraesCS1D01G353900 chr1B 90.310 258 4 2 6023 6259 596167549 596167806 1.010000e-82 318.0
11 TraesCS1D01G353900 chr1B 90.196 204 12 3 5795 5990 596167287 596167490 6.230000e-65 259.0
12 TraesCS1D01G353900 chr1B 96.178 157 6 0 908 1064 596158732 596158888 2.240000e-64 257.0
13 TraesCS1D01G353900 chr1B 90.155 193 15 4 502 691 596158312 596158503 1.350000e-61 248.0
14 TraesCS1D01G353900 chr1B 85.652 230 11 3 6051 6259 116139864 116140092 8.180000e-54 222.0
15 TraesCS1D01G353900 chr1B 85.217 230 11 4 6051 6259 146952118 146951891 1.370000e-51 215.0
16 TraesCS1D01G353900 chr1B 97.479 119 3 0 5659 5777 596167184 596167302 2.960000e-48 204.0
17 TraesCS1D01G353900 chr1B 92.857 84 5 1 827 909 596158625 596158708 3.070000e-23 121.0
18 TraesCS1D01G353900 chr1B 100.000 29 0 0 2154 2182 596160491 596160519 3.000000e-03 54.7
19 TraesCS1D01G353900 chr1A 95.156 2250 64 16 2149 4391 539333366 539331155 0.000000e+00 3509.0
20 TraesCS1D01G353900 chr1A 92.729 1114 29 11 4694 5772 539330579 539329483 0.000000e+00 1561.0
21 TraesCS1D01G353900 chr1A 92.293 532 36 5 1333 1859 539334623 539334092 0.000000e+00 750.0
22 TraesCS1D01G353900 chr1A 87.546 538 36 12 827 1333 539335252 539334715 1.500000e-165 593.0
23 TraesCS1D01G353900 chr1A 96.715 274 9 0 1851 2124 539333966 539333693 2.060000e-124 457.0
24 TraesCS1D01G353900 chr1A 91.291 333 3 9 4388 4695 539331034 539330703 1.250000e-116 431.0
25 TraesCS1D01G353900 chr1A 81.164 292 28 14 502 771 539335540 539335254 6.370000e-50 209.0
26 TraesCS1D01G353900 chr1A 88.060 67 5 3 2328 2393 406659320 406659384 6.740000e-10 76.8
27 TraesCS1D01G353900 chr1A 88.000 50 5 1 2340 2389 425046303 425046255 2.440000e-04 58.4
28 TraesCS1D01G353900 chr7A 95.418 502 22 1 1 502 17468481 17467981 0.000000e+00 798.0
29 TraesCS1D01G353900 chr6D 95.409 501 21 1 2 502 131986515 131986017 0.000000e+00 797.0
30 TraesCS1D01G353900 chr6D 86.441 177 18 5 5801 5974 396461546 396461719 8.290000e-44 189.0
31 TraesCS1D01G353900 chr6D 85.621 153 15 3 1872 2019 443865837 443865687 3.030000e-33 154.0
32 TraesCS1D01G353900 chr6D 88.889 63 7 0 5989 6051 438097025 438097087 1.870000e-10 78.7
33 TraesCS1D01G353900 chr2D 95.238 504 23 1 2 505 601243883 601243381 0.000000e+00 797.0
34 TraesCS1D01G353900 chr2D 87.302 441 48 7 1572 2009 38497175 38496740 1.210000e-136 497.0
35 TraesCS1D01G353900 chr2D 87.739 261 27 4 2759 3018 318686678 318686934 3.670000e-77 300.0
36 TraesCS1D01G353900 chr2D 79.848 263 29 16 3132 3381 412047246 412047497 3.000000e-38 171.0
37 TraesCS1D01G353900 chr2D 78.707 263 32 15 3132 3381 81964839 81965090 3.030000e-33 154.0
38 TraesCS1D01G353900 chr3A 95.382 498 19 3 1 497 517639550 517639056 0.000000e+00 789.0
39 TraesCS1D01G353900 chr3A 87.391 230 7 11 6051 6259 679845607 679845835 1.750000e-60 244.0
40 TraesCS1D01G353900 chr3A 86.957 230 8 7 6051 6259 714780773 714781001 8.120000e-59 239.0
41 TraesCS1D01G353900 chr3A 85.281 231 12 3 6051 6260 638895178 638894949 1.060000e-52 219.0
42 TraesCS1D01G353900 chr3A 87.293 181 15 6 5803 5980 667113552 667113727 3.830000e-47 200.0
43 TraesCS1D01G353900 chr6B 94.622 502 23 4 1 502 1007337 1006840 0.000000e+00 774.0
44 TraesCS1D01G353900 chr6B 84.375 96 11 4 2298 2393 687967815 687967724 2.410000e-14 91.6
45 TraesCS1D01G353900 chr2B 94.611 501 21 3 1 501 793414519 793415013 0.000000e+00 771.0
46 TraesCS1D01G353900 chr2B 84.375 96 11 4 2298 2393 560728615 560728706 2.410000e-14 91.6
47 TraesCS1D01G353900 chr2A 94.235 503 27 1 1 503 651597069 651596569 0.000000e+00 767.0
48 TraesCS1D01G353900 chr2A 94.235 503 27 1 1 503 699571937 699572437 0.000000e+00 767.0
49 TraesCS1D01G353900 chr2A 89.617 183 15 3 5801 5980 553333955 553333774 4.890000e-56 230.0
50 TraesCS1D01G353900 chr3D 83.754 634 85 11 1388 2009 607231305 607231932 9.050000e-163 584.0
51 TraesCS1D01G353900 chr3D 88.261 230 5 3 6051 6259 579680094 579680322 8.060000e-64 255.0
52 TraesCS1D01G353900 chr3D 88.333 180 15 5 5803 5980 535408578 535408753 1.770000e-50 211.0
53 TraesCS1D01G353900 chr3D 80.277 289 34 8 1727 2009 563742673 563742944 4.960000e-46 196.0
54 TraesCS1D01G353900 chr3D 84.967 153 16 4 1872 2019 124117851 124117701 1.410000e-31 148.0
55 TraesCS1D01G353900 chr3D 95.238 63 3 0 5989 6051 535408850 535408912 4.000000e-17 100.0
56 TraesCS1D01G353900 chr3D 92.063 63 5 0 5989 6051 322062253 322062315 8.650000e-14 89.8
57 TraesCS1D01G353900 chr3D 92.063 63 5 0 5989 6051 572483531 572483469 8.650000e-14 89.8
58 TraesCS1D01G353900 chr7D 88.261 230 5 3 6051 6259 600055001 600055229 8.060000e-64 255.0
59 TraesCS1D01G353900 chr7D 90.323 62 6 0 5989 6050 251376481 251376542 1.450000e-11 82.4
60 TraesCS1D01G353900 chr3B 87.826 230 6 3 6051 6259 774393670 774393898 3.750000e-62 250.0
61 TraesCS1D01G353900 chr3B 89.674 184 13 5 5801 5980 144216069 144216250 4.890000e-56 230.0
62 TraesCS1D01G353900 chr3B 94.915 118 5 1 6051 6168 734985082 734984966 3.860000e-42 183.0
63 TraesCS1D01G353900 chr4D 83.197 244 28 7 3124 3366 15255405 15255636 1.770000e-50 211.0
64 TraesCS1D01G353900 chr4D 91.667 60 5 0 5992 6051 480297358 480297299 4.030000e-12 84.2
65 TraesCS1D01G353900 chr4A 86.528 193 18 4 1823 2009 701628862 701629052 8.240000e-49 206.0
66 TraesCS1D01G353900 chr5D 81.206 282 28 15 1720 1995 334653392 334653654 2.960000e-48 204.0
67 TraesCS1D01G353900 chr5D 85.393 178 18 5 5803 5974 381780041 381780216 1.800000e-40 178.0
68 TraesCS1D01G353900 chr5D 88.889 63 7 0 5989 6051 243875992 243875930 1.870000e-10 78.7
69 TraesCS1D01G353900 chr5D 89.796 49 3 2 610 657 110639926 110639879 1.890000e-05 62.1
70 TraesCS1D01G353900 chr5A 88.050 159 13 4 5800 5955 359876179 359876024 3.860000e-42 183.0
71 TraesCS1D01G353900 chr5A 84.000 75 12 0 5989 6063 707070624 707070550 8.710000e-09 73.1
72 TraesCS1D01G353900 chr5B 78.723 282 43 14 3765 4044 468899964 468900230 8.350000e-39 172.0
73 TraesCS1D01G353900 chr6A 79.310 261 37 14 3786 4044 496043125 496042880 3.890000e-37 167.0
74 TraesCS1D01G353900 chr6A 94.681 94 5 0 6166 6259 121732806 121732713 5.060000e-31 147.0
75 TraesCS1D01G353900 chr7B 96.809 94 3 0 6166 6259 6976306 6976399 2.340000e-34 158.0
76 TraesCS1D01G353900 chr4B 90.476 63 6 0 5989 6051 163842705 163842767 4.030000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G353900 chr1D 439340263 439346529 6266 False 11574.000000 11574 100.000000 1 6267 1 chr1D.!!$F3 6266
1 TraesCS1D01G353900 chr1B 596158312 596167806 9494 False 765.154545 4133 93.923818 502 6259 11 chr1B.!!$F2 5757
2 TraesCS1D01G353900 chr1A 539329483 539335540 6057 True 1072.857143 3509 90.984857 502 5772 7 chr1A.!!$R2 5270
3 TraesCS1D01G353900 chr7A 17467981 17468481 500 True 798.000000 798 95.418000 1 502 1 chr7A.!!$R1 501
4 TraesCS1D01G353900 chr2D 601243381 601243883 502 True 797.000000 797 95.238000 2 505 1 chr2D.!!$R2 503
5 TraesCS1D01G353900 chr2A 651596569 651597069 500 True 767.000000 767 94.235000 1 503 1 chr2A.!!$R2 502
6 TraesCS1D01G353900 chr2A 699571937 699572437 500 False 767.000000 767 94.235000 1 503 1 chr2A.!!$F1 502
7 TraesCS1D01G353900 chr3D 607231305 607231932 627 False 584.000000 584 83.754000 1388 2009 1 chr3D.!!$F4 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 819 0.037326 TGAGAAACTCGAATGGCGCT 60.037 50.000 7.64 0.00 40.61 5.92 F
1712 2188 0.032267 GGTAGGTGCGCTCCAGATAC 59.968 60.000 28.68 20.88 0.00 2.24 F
1713 2189 0.744874 GTAGGTGCGCTCCAGATACA 59.255 55.000 28.68 5.24 0.00 2.29 F
2569 3500 1.540267 TGCACCTCGACAGAAGACTAC 59.460 52.381 0.00 0.00 0.00 2.73 F
3663 4596 3.753272 GCCTTGTGAAGTTATGAAGCAGA 59.247 43.478 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 3136 1.745232 AACCACAAACTCACGCTGAA 58.255 45.000 0.00 0.00 0.00 3.02 R
3663 4596 0.034670 GAGCCTTGGACTTGCATCCT 60.035 55.000 7.83 0.00 39.75 3.24 R
4130 5068 6.891388 TCAGGGTTTTTCTACACAGAAGTTA 58.109 36.000 0.00 0.00 41.75 2.24 R
4143 5081 4.159693 GTGGGAATGGTATCAGGGTTTTTC 59.840 45.833 0.00 0.00 0.00 2.29 R
5823 10135 0.034863 GATTTTACGTGCCCTGGGGA 60.035 55.000 16.03 9.43 37.50 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.934589 TCTTTGATCCGCGTACATGG 58.065 50.000 4.92 0.00 0.00 3.66
137 138 7.945033 AGCAATTGGTTTTAATACACTTGTG 57.055 32.000 3.82 0.00 30.41 3.33
274 275 3.878086 TTTGCTTCTTGACATGTCGAC 57.122 42.857 20.54 9.11 0.00 4.20
367 368 3.497048 GGGTTTAAATTGGTTTGGGTGGG 60.497 47.826 0.00 0.00 0.00 4.61
368 369 3.391626 GGTTTAAATTGGTTTGGGTGGGA 59.608 43.478 0.00 0.00 0.00 4.37
432 434 6.676213 GCATTAAACGGGTATGGTTCAAGTAC 60.676 42.308 0.00 0.00 0.00 2.73
480 482 7.148137 GGGTATGGTTCAAGTATGGTTTAAGTG 60.148 40.741 0.00 0.00 0.00 3.16
511 513 6.986817 CCATTCTCAGATTTAGTCATAACGGT 59.013 38.462 0.00 0.00 0.00 4.83
563 566 0.752054 CACAACAGGCCAACCATGTT 59.248 50.000 5.01 2.97 37.61 2.71
571 574 1.883926 GGCCAACCATGTTAGTTTCGT 59.116 47.619 0.00 0.00 35.26 3.85
594 597 2.174363 TAGTCGTGACTCAACTCCGA 57.826 50.000 5.66 0.00 42.54 4.55
608 611 5.063204 TCAACTCCGAATCAGTGTGATTTT 58.937 37.500 3.74 0.00 46.20 1.82
643 646 4.261656 CCGCAAAGTTGGTGGTTATTTGTA 60.262 41.667 1.20 0.00 34.22 2.41
644 647 4.915085 CGCAAAGTTGGTGGTTATTTGTAG 59.085 41.667 0.00 0.00 34.22 2.74
645 648 4.684242 GCAAAGTTGGTGGTTATTTGTAGC 59.316 41.667 0.00 0.00 34.22 3.58
657 660 8.539674 GTGGTTATTTGTAGCTTTTGACAAAAG 58.460 33.333 28.69 28.69 45.78 2.27
670 674 1.326951 ACAAAAGCGGTGGCAACCTT 61.327 50.000 9.09 0.00 45.17 3.50
681 685 2.688446 GTGGCAACCTTTTATCCTAGCC 59.312 50.000 0.00 0.00 41.15 3.93
749 794 3.319122 AGAGACCAATGGTGCTGTTTTTC 59.681 43.478 10.84 0.00 35.25 2.29
753 798 4.842574 ACCAATGGTGCTGTTTTTCTTTT 58.157 34.783 3.09 0.00 32.98 2.27
772 817 3.536158 TTTTGAGAAACTCGAATGGCG 57.464 42.857 0.00 0.00 34.33 5.69
773 818 0.796312 TTGAGAAACTCGAATGGCGC 59.204 50.000 0.00 0.00 40.61 6.53
774 819 0.037326 TGAGAAACTCGAATGGCGCT 60.037 50.000 7.64 0.00 40.61 5.92
775 820 0.371645 GAGAAACTCGAATGGCGCTG 59.628 55.000 7.64 0.00 40.61 5.18
776 821 1.021390 AGAAACTCGAATGGCGCTGG 61.021 55.000 7.64 0.00 40.61 4.85
777 822 1.298859 GAAACTCGAATGGCGCTGGT 61.299 55.000 7.64 0.00 40.61 4.00
778 823 0.889186 AAACTCGAATGGCGCTGGTT 60.889 50.000 7.64 0.00 40.61 3.67
779 824 0.889186 AACTCGAATGGCGCTGGTTT 60.889 50.000 7.64 0.00 40.61 3.27
780 825 0.889186 ACTCGAATGGCGCTGGTTTT 60.889 50.000 7.64 0.00 40.61 2.43
781 826 0.240945 CTCGAATGGCGCTGGTTTTT 59.759 50.000 7.64 0.00 40.61 1.94
804 849 3.951775 TTTTAAATCACCAATGGCGCT 57.048 38.095 7.64 0.00 0.00 5.92
805 850 2.937469 TTAAATCACCAATGGCGCTG 57.063 45.000 7.64 0.00 0.00 5.18
806 851 1.102154 TAAATCACCAATGGCGCTGG 58.898 50.000 12.30 12.30 40.05 4.85
810 855 3.965258 ACCAATGGCGCTGGTGGA 61.965 61.111 24.14 0.00 45.67 4.02
811 856 3.443045 CCAATGGCGCTGGTGGAC 61.443 66.667 15.79 0.00 32.54 4.02
812 857 2.672651 CAATGGCGCTGGTGGACA 60.673 61.111 7.64 0.00 0.00 4.02
813 858 2.048023 CAATGGCGCTGGTGGACAT 61.048 57.895 7.64 0.00 0.00 3.06
814 859 2.048023 AATGGCGCTGGTGGACATG 61.048 57.895 7.64 0.00 0.00 3.21
815 860 4.720902 TGGCGCTGGTGGACATGG 62.721 66.667 7.64 0.00 0.00 3.66
816 861 4.408821 GGCGCTGGTGGACATGGA 62.409 66.667 7.64 0.00 0.00 3.41
817 862 2.821366 GCGCTGGTGGACATGGAG 60.821 66.667 0.00 0.00 0.00 3.86
818 863 2.981302 CGCTGGTGGACATGGAGA 59.019 61.111 0.00 0.00 0.00 3.71
819 864 1.296392 CGCTGGTGGACATGGAGAA 59.704 57.895 0.00 0.00 0.00 2.87
820 865 0.321564 CGCTGGTGGACATGGAGAAA 60.322 55.000 0.00 0.00 0.00 2.52
821 866 1.881925 CGCTGGTGGACATGGAGAAAA 60.882 52.381 0.00 0.00 0.00 2.29
822 867 2.238521 GCTGGTGGACATGGAGAAAAA 58.761 47.619 0.00 0.00 0.00 1.94
837 882 4.426971 AAAAATAACCGGCCGGCT 57.573 50.000 43.58 34.82 39.32 5.52
842 887 2.193087 AATAACCGGCCGGCTCAAGT 62.193 55.000 43.58 21.49 39.32 3.16
847 892 2.978824 GGCCGGCTCAAGTAGACA 59.021 61.111 28.56 0.00 29.38 3.41
866 912 0.324091 AGCCCAGAAAAGCCCATGAG 60.324 55.000 0.00 0.00 0.00 2.90
997 1068 1.492599 CCTTCCAATCCTCCCTCCTTC 59.507 57.143 0.00 0.00 0.00 3.46
1082 1153 4.547367 CTCCCCAATCCGGCCGAC 62.547 72.222 30.73 0.00 0.00 4.79
1099 1176 0.100503 GACGCTCTCTTCAGCTCCTC 59.899 60.000 0.00 0.00 37.25 3.71
1160 1537 6.253942 GGATTCGTCTAGAACAGTAGCTTTTC 59.746 42.308 0.00 0.00 42.39 2.29
1173 1550 2.969443 GCTTTTCGCTTGTGCTAGAA 57.031 45.000 0.00 0.00 36.97 2.10
1176 1553 4.582459 GCTTTTCGCTTGTGCTAGAATAG 58.418 43.478 0.00 0.00 37.43 1.73
1214 1591 0.530650 CCATGGATCGTTCGTGAGGG 60.531 60.000 5.56 0.00 0.00 4.30
1218 1595 1.227002 GATCGTTCGTGAGGGAGGC 60.227 63.158 0.00 0.00 0.00 4.70
1276 1653 6.421501 CGACATGTGTAGTACTAGGAGTAGAG 59.578 46.154 1.15 0.00 30.12 2.43
1279 1656 7.346698 ACATGTGTAGTACTAGGAGTAGAGGTA 59.653 40.741 1.87 0.00 30.12 3.08
1296 1673 0.618458 GTACCAGGAAGGGCATGTGA 59.382 55.000 0.00 0.00 43.89 3.58
1306 1683 1.035139 GGGCATGTGACATGGATTCC 58.965 55.000 25.22 17.34 0.00 3.01
1365 1834 3.199727 TCCATGGAGCTGCAAGTAATGTA 59.800 43.478 13.45 0.00 35.30 2.29
1417 1888 6.928979 TTCGTGGTTTGAATACAGAAAAGA 57.071 33.333 0.00 0.00 0.00 2.52
1420 1891 6.540914 TCGTGGTTTGAATACAGAAAAGAAGT 59.459 34.615 0.00 0.00 0.00 3.01
1569 2044 2.102588 GCCTGGAACTACCGTATGTCAT 59.897 50.000 0.00 0.00 42.61 3.06
1615 2090 1.267121 TAGTCAGGAACAGGACAGGC 58.733 55.000 0.00 0.00 37.37 4.85
1633 2108 6.806739 GGACAGGCAATTAAACTTACATGTTC 59.193 38.462 2.30 0.00 0.00 3.18
1634 2109 6.378582 ACAGGCAATTAAACTTACATGTTCG 58.621 36.000 2.30 0.00 0.00 3.95
1652 2127 4.807304 TGTTCGAGACAGTTTACCTTTGAC 59.193 41.667 0.00 0.00 33.40 3.18
1663 2138 6.857964 CAGTTTACCTTTGACACTAAGCAATG 59.142 38.462 0.00 0.00 0.00 2.82
1666 2141 7.575414 TTACCTTTGACACTAAGCAATGAAA 57.425 32.000 0.00 0.00 0.00 2.69
1677 2153 3.587797 AGCAATGAAAATCAGCACCTG 57.412 42.857 0.00 0.00 0.00 4.00
1711 2187 0.396556 TGGTAGGTGCGCTCCAGATA 60.397 55.000 28.68 11.18 0.00 1.98
1712 2188 0.032267 GGTAGGTGCGCTCCAGATAC 59.968 60.000 28.68 20.88 0.00 2.24
1713 2189 0.744874 GTAGGTGCGCTCCAGATACA 59.255 55.000 28.68 5.24 0.00 2.29
2098 2727 1.844497 AGGCAATGTAGTTAGTCCCCC 59.156 52.381 0.00 0.00 0.00 5.40
2128 2757 2.894387 GCATCAGCGTCCAGAGCC 60.894 66.667 0.00 0.00 34.64 4.70
2129 2758 2.202987 CATCAGCGTCCAGAGCCC 60.203 66.667 0.00 0.00 34.64 5.19
2130 2759 3.842923 ATCAGCGTCCAGAGCCCG 61.843 66.667 0.00 0.00 34.64 6.13
2132 2761 4.803426 CAGCGTCCAGAGCCCGAC 62.803 72.222 0.00 0.00 34.64 4.79
2136 2765 4.083862 GTCCAGAGCCCGACCCAC 62.084 72.222 0.00 0.00 0.00 4.61
2139 2768 3.636231 CAGAGCCCGACCCACCAA 61.636 66.667 0.00 0.00 0.00 3.67
2140 2769 2.610859 AGAGCCCGACCCACCAAT 60.611 61.111 0.00 0.00 0.00 3.16
2141 2770 2.124695 GAGCCCGACCCACCAATC 60.125 66.667 0.00 0.00 0.00 2.67
2142 2771 4.096003 AGCCCGACCCACCAATCG 62.096 66.667 0.00 0.00 38.08 3.34
2146 2775 4.752879 CGACCCACCAATCGCCGT 62.753 66.667 0.00 0.00 0.00 5.68
2147 2776 2.818274 GACCCACCAATCGCCGTC 60.818 66.667 0.00 0.00 0.00 4.79
2184 3115 7.110155 GGGTCCTTTGTATTAACTTGAGATGA 58.890 38.462 0.00 0.00 0.00 2.92
2205 3136 2.127708 GGGTATTGAGATGGAGGTGGT 58.872 52.381 0.00 0.00 0.00 4.16
2253 3184 6.044682 GGGCTTATGATTTTGACCTGATTTG 58.955 40.000 0.00 0.00 0.00 2.32
2264 3195 5.598416 TGACCTGATTTGATGATACGAGT 57.402 39.130 0.00 0.00 0.00 4.18
2371 3302 6.320164 TGCATTGGATGGTTATGTAGTAAACC 59.680 38.462 0.00 0.00 44.51 3.27
2562 3493 2.038814 TTTGGCTGCACCTCGACAGA 62.039 55.000 0.50 0.00 40.22 3.41
2569 3500 1.540267 TGCACCTCGACAGAAGACTAC 59.460 52.381 0.00 0.00 0.00 2.73
3426 4358 5.176958 ACTGATTTTTACACGCTGTCTACAC 59.823 40.000 0.00 0.00 0.00 2.90
3663 4596 3.753272 GCCTTGTGAAGTTATGAAGCAGA 59.247 43.478 0.00 0.00 0.00 4.26
3892 4825 9.539825 TTTCTGATATAGAGAGAAAACATGAGC 57.460 33.333 0.00 0.00 36.61 4.26
4143 5081 7.316544 ACAAACTTGGTTAACTTCTGTGTAG 57.683 36.000 5.42 0.00 0.00 2.74
4158 5096 5.801380 TCTGTGTAGAAAAACCCTGATACC 58.199 41.667 0.00 0.00 0.00 2.73
4178 5117 8.172070 TGATACCATTCCCACATGATGATAATT 58.828 33.333 0.00 0.00 0.00 1.40
4220 5159 2.121291 TGCTTCAGTCACACAACCAA 57.879 45.000 0.00 0.00 0.00 3.67
4908 6176 2.480037 TGATTGACACACGCATCTGTTC 59.520 45.455 0.00 0.00 0.00 3.18
4990 6277 3.526931 ATTCTCTACACATCACCGTGG 57.473 47.619 0.00 0.00 41.38 4.94
5215 6503 1.452108 GGCGGTGGAATTCCTGAGG 60.452 63.158 24.73 12.43 36.82 3.86
5340 6628 2.031258 TTTGGTTTGTCTGACAGCGA 57.969 45.000 10.77 3.19 0.00 4.93
5492 6780 2.497675 TCTTGGAGCTAGTTGCCTGTAG 59.502 50.000 0.00 0.00 44.23 2.74
5604 6908 9.214953 CTTAGTTTTCGAAGATCATATGCAAAC 57.785 33.333 0.00 0.00 35.11 2.93
5626 6930 2.070262 TCAGTGTTCATGCGTCTCAG 57.930 50.000 0.00 0.00 0.00 3.35
5666 9978 1.115930 TCTGGGCGGATTCTAGGCTC 61.116 60.000 0.00 0.00 0.00 4.70
5777 10089 6.479990 CACGGAATCACTAATTAAGAGCATCA 59.520 38.462 0.00 0.00 37.82 3.07
5778 10090 6.703607 ACGGAATCACTAATTAAGAGCATCAG 59.296 38.462 0.00 0.00 37.82 2.90
5779 10091 6.347240 CGGAATCACTAATTAAGAGCATCAGC 60.347 42.308 0.00 0.00 37.82 4.26
5780 10092 6.072783 GGAATCACTAATTAAGAGCATCAGCC 60.073 42.308 0.00 0.00 43.56 4.85
5781 10093 4.708177 TCACTAATTAAGAGCATCAGCCC 58.292 43.478 0.00 0.00 43.56 5.19
5782 10094 3.817647 CACTAATTAAGAGCATCAGCCCC 59.182 47.826 0.00 0.00 43.56 5.80
5783 10095 3.718956 ACTAATTAAGAGCATCAGCCCCT 59.281 43.478 0.00 0.00 43.56 4.79
5784 10096 4.907875 ACTAATTAAGAGCATCAGCCCCTA 59.092 41.667 0.00 0.00 43.56 3.53
5785 10097 4.796110 AATTAAGAGCATCAGCCCCTAA 57.204 40.909 0.00 0.00 43.56 2.69
5786 10098 4.796110 ATTAAGAGCATCAGCCCCTAAA 57.204 40.909 0.00 0.00 43.56 1.85
5787 10099 4.584638 TTAAGAGCATCAGCCCCTAAAA 57.415 40.909 0.00 0.00 43.56 1.52
5788 10100 3.456380 AAGAGCATCAGCCCCTAAAAA 57.544 42.857 0.00 0.00 43.56 1.94
5842 10162 0.034863 TCCCCAGGGCACGTAAAATC 60.035 55.000 0.00 0.00 34.68 2.17
5845 10165 1.024579 CCAGGGCACGTAAAATCGCT 61.025 55.000 0.00 0.00 0.00 4.93
5883 10203 2.438795 TAAAATCGGCGTGGGGGC 60.439 61.111 6.85 0.00 37.98 5.80
5895 10215 2.436115 GGGGGCTTTCGAGTTCCG 60.436 66.667 0.00 0.00 40.25 4.30
5934 10254 1.627864 GCCCCCAGAAGCTGTTTAAA 58.372 50.000 0.00 0.00 0.00 1.52
5996 10351 3.614159 TTCGAGATTACATACGGGTCG 57.386 47.619 0.00 0.00 0.00 4.79
5998 10353 2.804527 TCGAGATTACATACGGGTCGAG 59.195 50.000 0.00 0.00 31.74 4.04
6031 10386 2.804090 GGTGAAGTCGCCGACGTC 60.804 66.667 23.27 23.27 40.44 4.34
6032 10387 3.164011 GTGAAGTCGCCGACGTCG 61.164 66.667 30.33 30.33 42.31 5.12
6118 10473 8.069574 TGCTAAAAGTCATTATATGCATCAACG 58.930 33.333 0.19 0.00 0.00 4.10
6168 10544 9.664332 ACTGCTGGATTAATTATCTGATATGTC 57.336 33.333 0.00 0.00 33.53 3.06
6259 10635 5.463286 TGCTTTGCATAGATTGAACTGTTG 58.537 37.500 8.49 0.00 31.71 3.33
6260 10636 4.325472 GCTTTGCATAGATTGAACTGTTGC 59.675 41.667 8.49 0.00 33.83 4.17
6261 10637 5.706916 CTTTGCATAGATTGAACTGTTGCT 58.293 37.500 0.00 0.00 34.13 3.91
6262 10638 4.690184 TGCATAGATTGAACTGTTGCTG 57.310 40.909 0.00 0.00 34.13 4.41
6263 10639 4.325972 TGCATAGATTGAACTGTTGCTGA 58.674 39.130 0.00 0.00 34.13 4.26
6264 10640 4.945543 TGCATAGATTGAACTGTTGCTGAT 59.054 37.500 0.00 0.00 34.13 2.90
6265 10641 5.065602 TGCATAGATTGAACTGTTGCTGATC 59.934 40.000 0.00 0.00 34.13 2.92
6266 10642 5.505324 GCATAGATTGAACTGTTGCTGATCC 60.505 44.000 0.00 0.00 32.01 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 2.620585 TCGATTTGCATGTGGTGTTTCA 59.379 40.909 0.00 0.00 0.00 2.69
137 138 1.795286 CCACGACTGAAAAGCTCACTC 59.205 52.381 0.00 0.00 0.00 3.51
180 181 2.341318 TGAGATACGGTCAACACACG 57.659 50.000 0.00 0.00 0.00 4.49
274 275 9.338291 GCTTCAATGTATATATGATTGCACAAG 57.662 33.333 11.72 11.23 0.00 3.16
395 397 3.583806 CGTTTAATGCCATTTTCAGCCA 58.416 40.909 0.00 0.00 0.00 4.75
432 434 4.568359 CCATACATGTCTCTCTCAAAACCG 59.432 45.833 0.00 0.00 0.00 4.44
480 482 7.672983 TGACTAAATCTGAGAATGGTTTCAC 57.327 36.000 0.00 0.00 34.08 3.18
549 551 2.095263 CGAAACTAACATGGTTGGCCTG 60.095 50.000 3.32 0.00 35.27 4.85
563 566 6.264832 TGAGTCACGACTAAAAACGAAACTA 58.735 36.000 0.00 0.00 42.66 2.24
571 574 4.046462 CGGAGTTGAGTCACGACTAAAAA 58.954 43.478 0.00 0.00 42.69 1.94
608 611 2.294074 ACTTTGCGGCAAGTGAGTAAA 58.706 42.857 15.78 0.00 0.00 2.01
620 623 3.056304 CAAATAACCACCAACTTTGCGG 58.944 45.455 0.00 0.00 0.00 5.69
625 628 6.724893 AAAGCTACAAATAACCACCAACTT 57.275 33.333 0.00 0.00 0.00 2.66
660 664 2.688446 GGCTAGGATAAAAGGTTGCCAC 59.312 50.000 0.00 0.00 38.99 5.01
728 773 3.319122 AGAAAAACAGCACCATTGGTCTC 59.681 43.478 5.04 0.77 31.02 3.36
731 776 4.486125 AAAGAAAAACAGCACCATTGGT 57.514 36.364 1.37 1.37 35.62 3.67
732 777 5.816449 AAAAAGAAAAACAGCACCATTGG 57.184 34.783 0.00 0.00 0.00 3.16
753 798 1.196808 GCGCCATTCGAGTTTCTCAAA 59.803 47.619 0.00 0.00 41.67 2.69
783 828 3.993081 CAGCGCCATTGGTGATTTAAAAA 59.007 39.130 20.37 0.00 39.68 1.94
784 829 3.583806 CAGCGCCATTGGTGATTTAAAA 58.416 40.909 20.37 0.00 39.68 1.52
785 830 2.094286 CCAGCGCCATTGGTGATTTAAA 60.094 45.455 20.37 0.00 39.68 1.52
786 831 1.476085 CCAGCGCCATTGGTGATTTAA 59.524 47.619 20.37 0.00 39.68 1.52
787 832 1.102154 CCAGCGCCATTGGTGATTTA 58.898 50.000 20.37 0.00 39.68 1.40
788 833 0.899717 ACCAGCGCCATTGGTGATTT 60.900 50.000 20.37 0.00 46.85 2.17
789 834 1.304381 ACCAGCGCCATTGGTGATT 60.304 52.632 20.37 4.24 46.85 2.57
790 835 2.356278 ACCAGCGCCATTGGTGAT 59.644 55.556 20.37 11.19 46.85 3.06
794 839 3.443045 GTCCACCAGCGCCATTGG 61.443 66.667 12.30 12.30 41.60 3.16
795 840 2.048023 ATGTCCACCAGCGCCATTG 61.048 57.895 2.29 0.00 0.00 2.82
796 841 2.048023 CATGTCCACCAGCGCCATT 61.048 57.895 2.29 0.00 0.00 3.16
797 842 2.438975 CATGTCCACCAGCGCCAT 60.439 61.111 2.29 0.00 0.00 4.40
798 843 4.720902 CCATGTCCACCAGCGCCA 62.721 66.667 2.29 0.00 0.00 5.69
799 844 4.408821 TCCATGTCCACCAGCGCC 62.409 66.667 2.29 0.00 0.00 6.53
800 845 2.803155 TTCTCCATGTCCACCAGCGC 62.803 60.000 0.00 0.00 0.00 5.92
801 846 0.321564 TTTCTCCATGTCCACCAGCG 60.322 55.000 0.00 0.00 0.00 5.18
802 847 1.909700 TTTTCTCCATGTCCACCAGC 58.090 50.000 0.00 0.00 0.00 4.85
820 865 0.609681 TGAGCCGGCCGGTTATTTTT 60.610 50.000 42.53 20.49 37.65 1.94
821 866 0.609681 TTGAGCCGGCCGGTTATTTT 60.610 50.000 42.53 22.23 37.65 1.82
822 867 1.001887 TTGAGCCGGCCGGTTATTT 60.002 52.632 42.53 24.00 37.65 1.40
823 868 1.451387 CTTGAGCCGGCCGGTTATT 60.451 57.895 42.53 26.50 37.65 1.40
824 869 1.332144 TACTTGAGCCGGCCGGTTAT 61.332 55.000 42.53 29.60 37.65 1.89
825 870 1.952102 CTACTTGAGCCGGCCGGTTA 61.952 60.000 42.53 26.95 37.65 2.85
836 881 3.685139 TTTCTGGGCTGTCTACTTGAG 57.315 47.619 0.00 0.00 0.00 3.02
837 882 3.807209 GCTTTTCTGGGCTGTCTACTTGA 60.807 47.826 0.00 0.00 0.00 3.02
842 887 0.328258 GGGCTTTTCTGGGCTGTCTA 59.672 55.000 0.00 0.00 0.00 2.59
847 892 0.324091 CTCATGGGCTTTTCTGGGCT 60.324 55.000 0.00 0.00 0.00 5.19
1046 1117 0.539901 GATAGTAGAGGAGGCGCCCA 60.540 60.000 26.15 0.00 37.37 5.36
1082 1153 1.037030 AGGAGGAGCTGAAGAGAGCG 61.037 60.000 0.00 0.00 44.24 5.03
1122 1199 2.287194 AATCCAGAGGGGTGGGGG 60.287 66.667 0.00 0.00 38.26 5.40
1127 1204 1.569548 TCTAGACGAATCCAGAGGGGT 59.430 52.381 0.00 0.00 38.11 4.95
1173 1550 1.153086 CCCTGCGGAAAGCTGCTAT 60.153 57.895 0.90 0.00 46.76 2.97
1184 1561 3.502621 ATCCATGGATGCCCTGCGG 62.503 63.158 26.78 0.00 32.98 5.69
1214 1591 2.095461 GAAGGATCACAAAAGGGCCTC 58.905 52.381 6.46 0.00 0.00 4.70
1218 1595 3.084786 GACCTGAAGGATCACAAAAGGG 58.915 50.000 2.62 0.00 38.94 3.95
1257 1634 6.098982 TGGTACCTCTACTCCTAGTACTACAC 59.901 46.154 14.36 0.00 34.94 2.90
1276 1653 0.394352 CACATGCCCTTCCTGGTACC 60.394 60.000 4.43 4.43 0.00 3.34
1279 1656 1.380302 GTCACATGCCCTTCCTGGT 59.620 57.895 0.00 0.00 0.00 4.00
1296 1673 2.703007 GCTACTCTCCAGGAATCCATGT 59.297 50.000 0.61 0.00 0.00 3.21
1338 1807 3.700538 ACTTGCAGCTCCATGGATTAAA 58.299 40.909 16.63 5.22 0.00 1.52
1350 1819 5.089970 TGTCTGATACATTACTTGCAGCT 57.910 39.130 0.00 0.00 31.43 4.24
1365 1834 4.050553 CAAACCGCAAAACAATGTCTGAT 58.949 39.130 0.27 0.00 0.00 2.90
1374 1844 4.208047 CGAAATCATTCAAACCGCAAAACA 59.792 37.500 0.00 0.00 35.15 2.83
1379 1849 2.351253 CCACGAAATCATTCAAACCGCA 60.351 45.455 0.00 0.00 35.15 5.69
1417 1888 7.011857 GTGTCTCTGACTGAATTTCAAGAACTT 59.988 37.037 0.01 0.00 33.15 2.66
1420 1891 6.586344 AGTGTCTCTGACTGAATTTCAAGAA 58.414 36.000 0.01 0.00 33.15 2.52
1428 1899 8.298729 TGACATATTAGTGTCTCTGACTGAAT 57.701 34.615 8.31 0.24 46.70 2.57
1535 2010 3.259123 AGTTCCAGGCAATCATTTTCCAC 59.741 43.478 0.00 0.00 0.00 4.02
1615 2090 8.495949 ACTGTCTCGAACATGTAAGTTTAATTG 58.504 33.333 0.00 0.00 37.23 2.32
1633 2108 4.369182 AGTGTCAAAGGTAAACTGTCTCG 58.631 43.478 0.00 0.00 0.00 4.04
1634 2109 6.073711 GCTTAGTGTCAAAGGTAAACTGTCTC 60.074 42.308 0.00 0.00 0.00 3.36
1652 2127 4.860907 GGTGCTGATTTTCATTGCTTAGTG 59.139 41.667 0.00 0.00 0.00 2.74
1663 2138 3.153919 TGGTAACCAGGTGCTGATTTTC 58.846 45.455 0.00 0.00 32.44 2.29
1666 2141 2.969821 TTGGTAACCAGGTGCTGATT 57.030 45.000 0.00 0.00 33.81 2.57
1725 2205 4.401022 AGTGCAAGTGATCTGGAATTTGA 58.599 39.130 0.00 0.00 0.00 2.69
2124 2753 2.124695 GATTGGTGGGTCGGGCTC 60.125 66.667 0.00 0.00 0.00 4.70
2125 2754 4.096003 CGATTGGTGGGTCGGGCT 62.096 66.667 0.00 0.00 34.39 5.19
2129 2758 4.752879 ACGGCGATTGGTGGGTCG 62.753 66.667 16.62 0.00 40.62 4.79
2130 2759 2.818274 GACGGCGATTGGTGGGTC 60.818 66.667 16.62 0.00 0.00 4.46
2131 2760 3.310860 GAGACGGCGATTGGTGGGT 62.311 63.158 16.62 0.00 0.00 4.51
2132 2761 2.511600 GAGACGGCGATTGGTGGG 60.512 66.667 16.62 0.00 0.00 4.61
2133 2762 2.511600 GGAGACGGCGATTGGTGG 60.512 66.667 16.62 0.00 0.00 4.61
2134 2763 2.511600 GGGAGACGGCGATTGGTG 60.512 66.667 16.62 0.00 0.00 4.17
2135 2764 4.143333 CGGGAGACGGCGATTGGT 62.143 66.667 16.62 0.00 39.42 3.67
2136 2765 3.365291 TTCGGGAGACGGCGATTGG 62.365 63.158 16.62 0.00 44.45 3.16
2137 2766 2.165301 GTTCGGGAGACGGCGATTG 61.165 63.158 16.62 0.00 44.45 2.67
2138 2767 1.885163 AAGTTCGGGAGACGGCGATT 61.885 55.000 16.62 0.00 44.45 3.34
2139 2768 2.348888 AAGTTCGGGAGACGGCGAT 61.349 57.895 16.62 0.11 44.45 4.58
2140 2769 2.987547 AAGTTCGGGAGACGGCGA 60.988 61.111 16.62 0.00 44.45 5.54
2141 2770 2.809601 CAAGTTCGGGAGACGGCG 60.810 66.667 4.80 4.80 44.45 6.46
2142 2771 2.434359 CCAAGTTCGGGAGACGGC 60.434 66.667 0.00 0.00 44.45 5.68
2184 3115 2.293856 ACCACCTCCATCTCAATACCCT 60.294 50.000 0.00 0.00 0.00 4.34
2205 3136 1.745232 AACCACAAACTCACGCTGAA 58.255 45.000 0.00 0.00 0.00 3.02
2389 3320 4.809426 CCATGTCCGGATCTAAACAGTAAC 59.191 45.833 7.81 0.00 0.00 2.50
2479 3410 9.561069 ACTGTAGTGAAATACATAATCCATTCC 57.439 33.333 0.00 0.00 35.21 3.01
3056 3987 3.520721 TCAATCAAATCTCAGGGCTCAGA 59.479 43.478 0.00 0.00 0.00 3.27
3121 4052 7.615365 TCTGTAGAAACCTGAAATATGGCAATT 59.385 33.333 0.00 0.00 0.00 2.32
3122 4053 7.118723 TCTGTAGAAACCTGAAATATGGCAAT 58.881 34.615 0.00 0.00 0.00 3.56
3373 4305 5.929415 GCCTCTAAATCCTAGTAACATGCTC 59.071 44.000 0.00 0.00 0.00 4.26
3426 4358 8.936864 ACAAAGAATAACTTATTGAGAACTCGG 58.063 33.333 0.00 0.00 37.93 4.63
3663 4596 0.034670 GAGCCTTGGACTTGCATCCT 60.035 55.000 7.83 0.00 39.75 3.24
4130 5068 6.891388 TCAGGGTTTTTCTACACAGAAGTTA 58.109 36.000 0.00 0.00 41.75 2.24
4136 5074 5.556915 TGGTATCAGGGTTTTTCTACACAG 58.443 41.667 0.00 0.00 0.00 3.66
4143 5081 4.159693 GTGGGAATGGTATCAGGGTTTTTC 59.840 45.833 0.00 0.00 0.00 2.29
4178 5117 9.593134 AGCAAAACTAAAATGTGTGACAAATAA 57.407 25.926 0.00 0.00 0.00 1.40
4220 5159 6.365970 AGACCCATATCTGCGAGAAATAAT 57.634 37.500 0.00 0.00 0.00 1.28
4309 5248 7.093509 ACAGGTTTCCAAAGTTACAAGAACAAT 60.094 33.333 0.00 0.00 0.00 2.71
4718 5985 8.648698 TTTGGGATTCTCAAGAAACATGATAA 57.351 30.769 0.00 0.00 37.61 1.75
4908 6176 6.690194 AAATATCAAACTGGCTAGCAGAAG 57.310 37.500 18.24 12.95 0.00 2.85
4990 6277 2.672714 GGAACGGGAAATGAACTTTGC 58.327 47.619 0.00 0.00 34.65 3.68
5215 6503 2.416893 GGTCTTCTCGTTGAAATGCTCC 59.583 50.000 0.00 0.00 33.79 4.70
5340 6628 3.196254 CCTGCATTAGCCAAATGGAACTT 59.804 43.478 2.98 0.00 44.25 2.66
5492 6780 2.110578 AGGGGCTACAAATGGAATTGC 58.889 47.619 0.00 0.00 36.10 3.56
5604 6908 1.125021 GAGACGCATGAACACTGAACG 59.875 52.381 0.00 0.00 0.00 3.95
5666 9978 0.508641 CAGGCAAACGACTCAAGACG 59.491 55.000 0.00 0.49 38.99 4.18
5790 10102 7.148000 GGCTGGAGATGCTCTTAATTAGTTTTT 60.148 37.037 0.00 0.00 0.00 1.94
5791 10103 6.319911 GGCTGGAGATGCTCTTAATTAGTTTT 59.680 38.462 0.00 0.00 0.00 2.43
5792 10104 5.825151 GGCTGGAGATGCTCTTAATTAGTTT 59.175 40.000 0.00 0.00 0.00 2.66
5793 10105 5.372373 GGCTGGAGATGCTCTTAATTAGTT 58.628 41.667 0.00 0.00 0.00 2.24
5794 10106 4.502259 CGGCTGGAGATGCTCTTAATTAGT 60.502 45.833 0.00 0.00 0.00 2.24
5795 10107 3.993081 CGGCTGGAGATGCTCTTAATTAG 59.007 47.826 0.00 0.00 0.00 1.73
5796 10108 3.388024 ACGGCTGGAGATGCTCTTAATTA 59.612 43.478 0.00 0.00 0.00 1.40
5797 10109 2.171448 ACGGCTGGAGATGCTCTTAATT 59.829 45.455 0.00 0.00 0.00 1.40
5798 10110 1.765314 ACGGCTGGAGATGCTCTTAAT 59.235 47.619 0.00 0.00 0.00 1.40
5799 10111 1.195115 ACGGCTGGAGATGCTCTTAA 58.805 50.000 0.00 0.00 0.00 1.85
5800 10112 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
5801 10113 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
5802 10114 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
5803 10115 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
5823 10135 0.034863 GATTTTACGTGCCCTGGGGA 60.035 55.000 16.03 9.43 37.50 4.81
5825 10137 1.988834 GCGATTTTACGTGCCCTGGG 61.989 60.000 8.86 8.86 35.59 4.45
5826 10138 1.024579 AGCGATTTTACGTGCCCTGG 61.025 55.000 0.00 0.00 35.59 4.45
5833 10153 1.024579 CCCAGGCAGCGATTTTACGT 61.025 55.000 0.00 0.00 35.59 3.57
5950 10270 2.875933 TGTCCAGTTTGCCGAACTTTAG 59.124 45.455 0.00 0.00 46.34 1.85
5958 10278 3.126171 TCGAATATTTGTCCAGTTTGCCG 59.874 43.478 2.57 0.00 0.00 5.69
5971 10291 6.805271 CGACCCGTATGTAATCTCGAATATTT 59.195 38.462 0.00 0.00 0.00 1.40
5996 10351 3.482783 GTGCTCAGCGCGTTCCTC 61.483 66.667 8.43 0.00 43.27 3.71
6036 10391 4.873129 CACCGACGGCGAGGATGG 62.873 72.222 26.65 16.56 40.82 3.51
6037 10392 2.274232 TAACACCGACGGCGAGGATG 62.274 60.000 26.65 21.72 40.82 3.51
6118 10473 2.623416 AGGGCATTTAATTTAGAGCCGC 59.377 45.455 0.00 0.00 42.89 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.