Multiple sequence alignment - TraesCS1D01G353800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G353800 chr1D 100.000 2473 0 0 1 2473 439304563 439307035 0.000000e+00 4567.0
1 TraesCS1D01G353800 chr1D 92.453 424 29 3 180 602 336628036 336628457 9.780000e-169 603.0
2 TraesCS1D01G353800 chr1D 91.529 425 30 4 182 602 343523429 343523007 4.580000e-162 580.0
3 TraesCS1D01G353800 chr1B 88.909 1127 60 30 608 1709 596038249 596039335 0.000000e+00 1328.0
4 TraesCS1D01G353800 chr1B 94.459 740 32 2 1734 2473 596039400 596040130 0.000000e+00 1131.0
5 TraesCS1D01G353800 chr1B 98.529 68 1 0 34 101 596038135 596038202 1.200000e-23 121.0
6 TraesCS1D01G353800 chr1A 89.536 841 44 20 613 1425 535444964 535445788 0.000000e+00 1026.0
7 TraesCS1D01G353800 chr1A 92.929 693 21 6 1790 2473 535446185 535446858 0.000000e+00 983.0
8 TraesCS1D01G353800 chr1A 92.000 100 2 4 1 97 535444761 535444857 4.290000e-28 135.0
9 TraesCS1D01G353800 chr3D 93.396 424 26 2 180 602 236667334 236666912 5.810000e-176 627.0
10 TraesCS1D01G353800 chr3D 97.917 48 1 0 1374 1421 392054756 392054803 1.580000e-12 84.2
11 TraesCS1D01G353800 chr6D 92.723 426 27 4 180 602 75644211 75643787 1.630000e-171 612.0
12 TraesCS1D01G353800 chr6D 92.689 424 29 2 180 602 449665677 449666099 5.850000e-171 610.0
13 TraesCS1D01G353800 chr2D 92.254 426 29 4 180 602 627064945 627064521 3.520000e-168 601.0
14 TraesCS1D01G353800 chr2D 91.745 424 31 4 180 602 113605203 113605623 9.850000e-164 586.0
15 TraesCS1D01G353800 chr4D 91.765 425 32 3 180 602 364375117 364375540 2.740000e-164 588.0
16 TraesCS1D01G353800 chr5A 92.029 414 30 3 180 592 438144828 438145239 1.650000e-161 579.0
17 TraesCS1D01G353800 chr3B 77.647 170 23 10 1252 1421 511071406 511071560 3.390000e-14 89.8
18 TraesCS1D01G353800 chr3A 98.000 50 1 0 1372 1421 512308376 512308425 1.220000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G353800 chr1D 439304563 439307035 2472 False 4567.000000 4567 100.000000 1 2473 1 chr1D.!!$F2 2472
1 TraesCS1D01G353800 chr1B 596038135 596040130 1995 False 860.000000 1328 93.965667 34 2473 3 chr1B.!!$F1 2439
2 TraesCS1D01G353800 chr1A 535444761 535446858 2097 False 714.666667 1026 91.488333 1 2473 3 chr1A.!!$F1 2472

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 427 0.03467 GCCAGATTGTTCCAGAGGCT 60.035 55.0 0.0 0.0 37.67 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1976 2200 0.037232 GAGGTAGGTGTGCTGTGGAC 60.037 60.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 87 3.126831 GGATAAATCAGACGGTCAGCAG 58.873 50.000 11.27 0.00 0.00 4.24
97 99 1.808945 GGTCAGCAGTTGGTTGATCTG 59.191 52.381 0.00 0.00 39.05 2.90
98 100 2.550855 GGTCAGCAGTTGGTTGATCTGA 60.551 50.000 0.00 0.00 39.05 3.27
126 161 2.767505 GATCGGCCTGAAATATTCGGT 58.232 47.619 0.00 0.00 34.15 4.69
165 200 0.247695 GCGCGCCTTCTCATAACAAC 60.248 55.000 23.24 0.00 0.00 3.32
166 201 1.359848 CGCGCCTTCTCATAACAACT 58.640 50.000 0.00 0.00 0.00 3.16
167 202 2.536365 CGCGCCTTCTCATAACAACTA 58.464 47.619 0.00 0.00 0.00 2.24
168 203 2.535984 CGCGCCTTCTCATAACAACTAG 59.464 50.000 0.00 0.00 0.00 2.57
169 204 2.285488 GCGCCTTCTCATAACAACTAGC 59.715 50.000 0.00 0.00 0.00 3.42
170 205 3.521560 CGCCTTCTCATAACAACTAGCA 58.478 45.455 0.00 0.00 0.00 3.49
171 206 3.932710 CGCCTTCTCATAACAACTAGCAA 59.067 43.478 0.00 0.00 0.00 3.91
172 207 4.033358 CGCCTTCTCATAACAACTAGCAAG 59.967 45.833 0.00 0.00 0.00 4.01
173 208 5.178797 GCCTTCTCATAACAACTAGCAAGA 58.821 41.667 0.00 0.00 0.00 3.02
174 209 5.819901 GCCTTCTCATAACAACTAGCAAGAT 59.180 40.000 0.00 0.00 0.00 2.40
175 210 6.238320 GCCTTCTCATAACAACTAGCAAGATG 60.238 42.308 0.00 0.00 0.00 2.90
176 211 6.238320 CCTTCTCATAACAACTAGCAAGATGC 60.238 42.308 0.00 0.00 45.46 3.91
177 212 5.118990 TCTCATAACAACTAGCAAGATGCC 58.881 41.667 0.00 0.00 46.52 4.40
178 213 4.199310 TCATAACAACTAGCAAGATGCCC 58.801 43.478 0.00 0.00 46.52 5.36
179 214 1.453155 AACAACTAGCAAGATGCCCG 58.547 50.000 0.00 0.00 46.52 6.13
180 215 1.026718 ACAACTAGCAAGATGCCCGC 61.027 55.000 0.00 0.00 46.52 6.13
181 216 1.026182 CAACTAGCAAGATGCCCGCA 61.026 55.000 0.00 0.00 46.52 5.69
182 217 1.026718 AACTAGCAAGATGCCCGCAC 61.027 55.000 0.00 0.00 46.52 5.34
183 218 2.511373 TAGCAAGATGCCCGCACG 60.511 61.111 0.00 0.00 46.52 5.34
186 221 2.745884 CAAGATGCCCGCACGGAA 60.746 61.111 11.42 0.00 37.50 4.30
187 222 2.746277 AAGATGCCCGCACGGAAC 60.746 61.111 11.42 2.76 37.50 3.62
188 223 3.545124 AAGATGCCCGCACGGAACA 62.545 57.895 11.42 8.91 37.50 3.18
189 224 3.799755 GATGCCCGCACGGAACAC 61.800 66.667 11.42 0.00 37.50 3.32
234 269 2.816087 ACCTGTTGTGATTGACTCATGC 59.184 45.455 0.00 0.00 35.97 4.06
235 270 2.159612 CCTGTTGTGATTGACTCATGCG 60.160 50.000 0.00 0.00 35.97 4.73
236 271 1.805943 TGTTGTGATTGACTCATGCGG 59.194 47.619 0.00 0.00 35.97 5.69
237 272 1.131126 GTTGTGATTGACTCATGCGGG 59.869 52.381 0.00 0.00 35.97 6.13
238 273 0.612744 TGTGATTGACTCATGCGGGA 59.387 50.000 0.00 0.00 35.97 5.14
239 274 1.293924 GTGATTGACTCATGCGGGAG 58.706 55.000 3.13 3.13 40.79 4.30
246 281 0.759346 ACTCATGCGGGAGTAATCCC 59.241 55.000 18.69 18.69 45.95 3.85
261 296 8.570068 GGAGTAATCCCATGTGTAAAAACTAA 57.430 34.615 0.00 0.00 0.00 2.24
262 297 9.185680 GGAGTAATCCCATGTGTAAAAACTAAT 57.814 33.333 0.00 0.00 0.00 1.73
264 299 9.747898 AGTAATCCCATGTGTAAAAACTAATGA 57.252 29.630 0.00 0.00 0.00 2.57
291 326 7.969690 TCTTGAGAAAGATGAGAGATAAGGT 57.030 36.000 0.00 0.00 0.00 3.50
292 327 7.780064 TCTTGAGAAAGATGAGAGATAAGGTG 58.220 38.462 0.00 0.00 0.00 4.00
293 328 7.617329 TCTTGAGAAAGATGAGAGATAAGGTGA 59.383 37.037 0.00 0.00 0.00 4.02
294 329 7.345422 TGAGAAAGATGAGAGATAAGGTGAG 57.655 40.000 0.00 0.00 0.00 3.51
295 330 6.323482 TGAGAAAGATGAGAGATAAGGTGAGG 59.677 42.308 0.00 0.00 0.00 3.86
296 331 6.439487 AGAAAGATGAGAGATAAGGTGAGGA 58.561 40.000 0.00 0.00 0.00 3.71
297 332 6.550854 AGAAAGATGAGAGATAAGGTGAGGAG 59.449 42.308 0.00 0.00 0.00 3.69
298 333 4.739793 AGATGAGAGATAAGGTGAGGAGG 58.260 47.826 0.00 0.00 0.00 4.30
299 334 4.418526 AGATGAGAGATAAGGTGAGGAGGA 59.581 45.833 0.00 0.00 0.00 3.71
300 335 4.177537 TGAGAGATAAGGTGAGGAGGAG 57.822 50.000 0.00 0.00 0.00 3.69
301 336 3.529734 TGAGAGATAAGGTGAGGAGGAGT 59.470 47.826 0.00 0.00 0.00 3.85
302 337 3.888930 GAGAGATAAGGTGAGGAGGAGTG 59.111 52.174 0.00 0.00 0.00 3.51
303 338 2.962421 GAGATAAGGTGAGGAGGAGTGG 59.038 54.545 0.00 0.00 0.00 4.00
304 339 2.043227 GATAAGGTGAGGAGGAGTGGG 58.957 57.143 0.00 0.00 0.00 4.61
305 340 1.089978 TAAGGTGAGGAGGAGTGGGA 58.910 55.000 0.00 0.00 0.00 4.37
306 341 0.545548 AAGGTGAGGAGGAGTGGGAC 60.546 60.000 0.00 0.00 0.00 4.46
307 342 2.352032 GGTGAGGAGGAGTGGGACG 61.352 68.421 0.00 0.00 0.00 4.79
308 343 1.606889 GTGAGGAGGAGTGGGACGT 60.607 63.158 0.00 0.00 0.00 4.34
309 344 1.606601 TGAGGAGGAGTGGGACGTG 60.607 63.158 0.00 0.00 0.00 4.49
310 345 2.283966 AGGAGGAGTGGGACGTGG 60.284 66.667 0.00 0.00 0.00 4.94
311 346 2.603776 GGAGGAGTGGGACGTGGT 60.604 66.667 0.00 0.00 0.00 4.16
312 347 2.657237 GAGGAGTGGGACGTGGTG 59.343 66.667 0.00 0.00 0.00 4.17
313 348 2.923035 AGGAGTGGGACGTGGTGG 60.923 66.667 0.00 0.00 0.00 4.61
314 349 3.239253 GGAGTGGGACGTGGTGGT 61.239 66.667 0.00 0.00 0.00 4.16
315 350 2.030562 GAGTGGGACGTGGTGGTG 59.969 66.667 0.00 0.00 0.00 4.17
316 351 2.445085 AGTGGGACGTGGTGGTGA 60.445 61.111 0.00 0.00 0.00 4.02
317 352 1.827399 GAGTGGGACGTGGTGGTGAT 61.827 60.000 0.00 0.00 0.00 3.06
318 353 1.072505 GTGGGACGTGGTGGTGATT 59.927 57.895 0.00 0.00 0.00 2.57
319 354 1.072332 TGGGACGTGGTGGTGATTG 59.928 57.895 0.00 0.00 0.00 2.67
320 355 1.674322 GGGACGTGGTGGTGATTGG 60.674 63.158 0.00 0.00 0.00 3.16
321 356 1.072505 GGACGTGGTGGTGATTGGT 59.927 57.895 0.00 0.00 0.00 3.67
322 357 1.234615 GGACGTGGTGGTGATTGGTG 61.235 60.000 0.00 0.00 0.00 4.17
323 358 1.228124 ACGTGGTGGTGATTGGTGG 60.228 57.895 0.00 0.00 0.00 4.61
324 359 1.228124 CGTGGTGGTGATTGGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
325 360 0.821711 CGTGGTGGTGATTGGTGGTT 60.822 55.000 0.00 0.00 0.00 3.67
326 361 0.673437 GTGGTGGTGATTGGTGGTTG 59.327 55.000 0.00 0.00 0.00 3.77
327 362 0.468958 TGGTGGTGATTGGTGGTTGG 60.469 55.000 0.00 0.00 0.00 3.77
328 363 0.178975 GGTGGTGATTGGTGGTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
329 364 0.958822 GTGGTGATTGGTGGTTGGAC 59.041 55.000 0.00 0.00 0.00 4.02
330 365 0.850100 TGGTGATTGGTGGTTGGACT 59.150 50.000 0.00 0.00 0.00 3.85
331 366 1.247567 GGTGATTGGTGGTTGGACTG 58.752 55.000 0.00 0.00 0.00 3.51
332 367 1.202879 GGTGATTGGTGGTTGGACTGA 60.203 52.381 0.00 0.00 0.00 3.41
333 368 2.154462 GTGATTGGTGGTTGGACTGAG 58.846 52.381 0.00 0.00 0.00 3.35
334 369 1.168714 GATTGGTGGTTGGACTGAGC 58.831 55.000 0.00 0.00 0.00 4.26
335 370 0.606401 ATTGGTGGTTGGACTGAGCG 60.606 55.000 0.00 0.00 0.00 5.03
336 371 2.358737 GGTGGTTGGACTGAGCGG 60.359 66.667 0.00 0.00 0.00 5.52
337 372 2.741092 GTGGTTGGACTGAGCGGA 59.259 61.111 0.00 0.00 0.00 5.54
338 373 1.374758 GTGGTTGGACTGAGCGGAG 60.375 63.158 0.00 0.00 0.00 4.63
339 374 2.266055 GGTTGGACTGAGCGGAGG 59.734 66.667 0.00 0.00 0.00 4.30
340 375 2.435059 GTTGGACTGAGCGGAGGC 60.435 66.667 0.00 0.00 40.37 4.70
341 376 2.922503 TTGGACTGAGCGGAGGCA 60.923 61.111 0.00 0.00 43.41 4.75
342 377 2.293318 TTGGACTGAGCGGAGGCAT 61.293 57.895 0.00 0.00 43.41 4.40
343 378 2.202987 GGACTGAGCGGAGGCATG 60.203 66.667 0.00 0.00 43.41 4.06
344 379 2.202987 GACTGAGCGGAGGCATGG 60.203 66.667 0.00 0.00 43.41 3.66
345 380 3.746949 GACTGAGCGGAGGCATGGG 62.747 68.421 0.00 0.00 43.41 4.00
346 381 3.473647 CTGAGCGGAGGCATGGGA 61.474 66.667 0.00 0.00 43.41 4.37
347 382 2.769621 TGAGCGGAGGCATGGGAT 60.770 61.111 0.00 0.00 43.41 3.85
348 383 2.281345 GAGCGGAGGCATGGGATG 60.281 66.667 0.00 0.00 43.41 3.51
349 384 3.839353 GAGCGGAGGCATGGGATGG 62.839 68.421 0.00 0.00 43.41 3.51
350 385 3.877450 GCGGAGGCATGGGATGGA 61.877 66.667 0.00 0.00 39.62 3.41
351 386 2.111878 CGGAGGCATGGGATGGAC 59.888 66.667 0.00 0.00 0.00 4.02
352 387 2.111878 GGAGGCATGGGATGGACG 59.888 66.667 0.00 0.00 0.00 4.79
353 388 2.443394 GGAGGCATGGGATGGACGA 61.443 63.158 0.00 0.00 0.00 4.20
354 389 1.227674 GAGGCATGGGATGGACGAC 60.228 63.158 0.00 0.00 0.00 4.34
355 390 1.971505 GAGGCATGGGATGGACGACA 61.972 60.000 0.00 0.00 0.00 4.35
356 391 1.819632 GGCATGGGATGGACGACAC 60.820 63.158 0.00 0.00 0.00 3.67
357 392 1.819632 GCATGGGATGGACGACACC 60.820 63.158 0.00 0.00 0.00 4.16
358 393 1.521457 CATGGGATGGACGACACCG 60.521 63.158 0.00 0.00 42.50 4.94
359 394 2.731571 ATGGGATGGACGACACCGG 61.732 63.158 0.00 0.00 40.78 5.28
360 395 4.832608 GGGATGGACGACACCGGC 62.833 72.222 0.00 0.00 44.80 6.13
384 419 2.573941 GCCATCTTGCCAGATTGTTC 57.426 50.000 0.00 0.00 37.71 3.18
385 420 1.135721 GCCATCTTGCCAGATTGTTCC 59.864 52.381 0.00 0.00 37.71 3.62
386 421 2.449464 CCATCTTGCCAGATTGTTCCA 58.551 47.619 0.00 0.00 37.71 3.53
387 422 2.426024 CCATCTTGCCAGATTGTTCCAG 59.574 50.000 0.00 0.00 37.71 3.86
388 423 3.349927 CATCTTGCCAGATTGTTCCAGA 58.650 45.455 0.00 0.00 37.71 3.86
389 424 3.063510 TCTTGCCAGATTGTTCCAGAG 57.936 47.619 0.00 0.00 0.00 3.35
390 425 2.089980 CTTGCCAGATTGTTCCAGAGG 58.910 52.381 0.00 0.00 0.00 3.69
391 426 0.322816 TGCCAGATTGTTCCAGAGGC 60.323 55.000 0.00 0.00 40.93 4.70
392 427 0.034670 GCCAGATTGTTCCAGAGGCT 60.035 55.000 0.00 0.00 37.67 4.58
393 428 1.615384 GCCAGATTGTTCCAGAGGCTT 60.615 52.381 0.00 0.00 37.67 4.35
394 429 2.363683 CCAGATTGTTCCAGAGGCTTC 58.636 52.381 0.00 0.00 0.00 3.86
395 430 2.363683 CAGATTGTTCCAGAGGCTTCC 58.636 52.381 0.00 0.00 0.00 3.46
396 431 2.026449 CAGATTGTTCCAGAGGCTTCCT 60.026 50.000 0.00 0.00 36.03 3.36
397 432 2.646798 AGATTGTTCCAGAGGCTTCCTT 59.353 45.455 0.00 0.00 31.76 3.36
398 433 3.075134 AGATTGTTCCAGAGGCTTCCTTT 59.925 43.478 0.00 0.00 31.76 3.11
399 434 3.312736 TTGTTCCAGAGGCTTCCTTTT 57.687 42.857 0.00 0.00 31.76 2.27
400 435 3.312736 TGTTCCAGAGGCTTCCTTTTT 57.687 42.857 0.00 0.00 31.76 1.94
437 472 7.862648 CAATGAGATTGTGTGAGATAAGGATG 58.137 38.462 0.00 0.00 35.57 3.51
438 473 6.796785 TGAGATTGTGTGAGATAAGGATGA 57.203 37.500 0.00 0.00 0.00 2.92
439 474 7.186570 TGAGATTGTGTGAGATAAGGATGAA 57.813 36.000 0.00 0.00 0.00 2.57
440 475 7.044181 TGAGATTGTGTGAGATAAGGATGAAC 58.956 38.462 0.00 0.00 0.00 3.18
441 476 6.045318 AGATTGTGTGAGATAAGGATGAACG 58.955 40.000 0.00 0.00 0.00 3.95
442 477 5.400066 TTGTGTGAGATAAGGATGAACGA 57.600 39.130 0.00 0.00 0.00 3.85
443 478 5.400066 TGTGTGAGATAAGGATGAACGAA 57.600 39.130 0.00 0.00 0.00 3.85
444 479 5.410924 TGTGTGAGATAAGGATGAACGAAG 58.589 41.667 0.00 0.00 0.00 3.79
445 480 4.806247 GTGTGAGATAAGGATGAACGAAGG 59.194 45.833 0.00 0.00 0.00 3.46
446 481 4.709886 TGTGAGATAAGGATGAACGAAGGA 59.290 41.667 0.00 0.00 0.00 3.36
447 482 5.186992 TGTGAGATAAGGATGAACGAAGGAA 59.813 40.000 0.00 0.00 0.00 3.36
448 483 6.127054 TGTGAGATAAGGATGAACGAAGGAAT 60.127 38.462 0.00 0.00 0.00 3.01
449 484 6.201806 GTGAGATAAGGATGAACGAAGGAATG 59.798 42.308 0.00 0.00 0.00 2.67
450 485 5.059833 AGATAAGGATGAACGAAGGAATGC 58.940 41.667 0.00 0.00 0.00 3.56
451 486 2.044123 AGGATGAACGAAGGAATGCC 57.956 50.000 0.00 0.00 0.00 4.40
464 499 4.931661 AGGAATGCCTTATCTGCAAATG 57.068 40.909 0.00 0.00 43.90 2.32
465 500 4.284178 AGGAATGCCTTATCTGCAAATGT 58.716 39.130 0.00 0.00 43.90 2.71
466 501 4.098960 AGGAATGCCTTATCTGCAAATGTG 59.901 41.667 0.00 0.00 43.90 3.21
467 502 4.365723 GAATGCCTTATCTGCAAATGTGG 58.634 43.478 0.00 0.00 42.92 4.17
468 503 3.084536 TGCCTTATCTGCAAATGTGGA 57.915 42.857 0.00 0.00 35.40 4.02
469 504 3.429492 TGCCTTATCTGCAAATGTGGAA 58.571 40.909 0.00 0.00 35.40 3.53
470 505 3.831333 TGCCTTATCTGCAAATGTGGAAA 59.169 39.130 0.00 0.00 35.40 3.13
471 506 4.082081 TGCCTTATCTGCAAATGTGGAAAG 60.082 41.667 0.00 0.00 35.40 2.62
472 507 4.158394 GCCTTATCTGCAAATGTGGAAAGA 59.842 41.667 0.00 0.00 0.00 2.52
473 508 5.678107 GCCTTATCTGCAAATGTGGAAAGAG 60.678 44.000 0.00 0.00 0.00 2.85
474 509 5.163581 CCTTATCTGCAAATGTGGAAAGAGG 60.164 44.000 0.00 0.00 0.00 3.69
475 510 3.228188 TCTGCAAATGTGGAAAGAGGT 57.772 42.857 0.00 0.00 0.00 3.85
476 511 2.886523 TCTGCAAATGTGGAAAGAGGTG 59.113 45.455 0.00 0.00 0.00 4.00
477 512 1.340889 TGCAAATGTGGAAAGAGGTGC 59.659 47.619 0.00 0.00 0.00 5.01
478 513 1.666888 GCAAATGTGGAAAGAGGTGCG 60.667 52.381 0.00 0.00 0.00 5.34
479 514 1.068333 CAAATGTGGAAAGAGGTGCGG 60.068 52.381 0.00 0.00 0.00 5.69
480 515 0.609131 AATGTGGAAAGAGGTGCGGG 60.609 55.000 0.00 0.00 0.00 6.13
481 516 1.779061 ATGTGGAAAGAGGTGCGGGT 61.779 55.000 0.00 0.00 0.00 5.28
482 517 1.122632 TGTGGAAAGAGGTGCGGGTA 61.123 55.000 0.00 0.00 0.00 3.69
483 518 0.252197 GTGGAAAGAGGTGCGGGTAT 59.748 55.000 0.00 0.00 0.00 2.73
484 519 0.251916 TGGAAAGAGGTGCGGGTATG 59.748 55.000 0.00 0.00 0.00 2.39
485 520 0.252197 GGAAAGAGGTGCGGGTATGT 59.748 55.000 0.00 0.00 0.00 2.29
486 521 1.339727 GGAAAGAGGTGCGGGTATGTT 60.340 52.381 0.00 0.00 0.00 2.71
487 522 2.433436 GAAAGAGGTGCGGGTATGTTT 58.567 47.619 0.00 0.00 0.00 2.83
488 523 2.579410 AAGAGGTGCGGGTATGTTTT 57.421 45.000 0.00 0.00 0.00 2.43
489 524 2.579410 AGAGGTGCGGGTATGTTTTT 57.421 45.000 0.00 0.00 0.00 1.94
521 556 8.732746 ATTAACATAGTTTGCTTTCTATCCGT 57.267 30.769 0.00 0.00 0.00 4.69
522 557 6.663944 AACATAGTTTGCTTTCTATCCGTC 57.336 37.500 0.00 0.00 0.00 4.79
523 558 5.730550 ACATAGTTTGCTTTCTATCCGTCA 58.269 37.500 0.00 0.00 0.00 4.35
524 559 5.812642 ACATAGTTTGCTTTCTATCCGTCAG 59.187 40.000 0.00 0.00 0.00 3.51
525 560 4.537135 AGTTTGCTTTCTATCCGTCAGA 57.463 40.909 0.00 0.00 0.00 3.27
526 561 5.091261 AGTTTGCTTTCTATCCGTCAGAT 57.909 39.130 0.00 0.00 39.15 2.90
527 562 6.222038 AGTTTGCTTTCTATCCGTCAGATA 57.778 37.500 0.00 0.00 36.33 1.98
528 563 6.821388 AGTTTGCTTTCTATCCGTCAGATAT 58.179 36.000 0.00 0.00 36.84 1.63
529 564 7.952671 AGTTTGCTTTCTATCCGTCAGATATA 58.047 34.615 0.00 0.00 36.84 0.86
530 565 8.085296 AGTTTGCTTTCTATCCGTCAGATATAG 58.915 37.037 0.00 0.00 36.84 1.31
531 566 7.761038 TTGCTTTCTATCCGTCAGATATAGA 57.239 36.000 0.00 0.00 36.84 1.98
532 567 7.946381 TGCTTTCTATCCGTCAGATATAGAT 57.054 36.000 0.00 0.00 36.84 1.98
533 568 7.990917 TGCTTTCTATCCGTCAGATATAGATC 58.009 38.462 0.00 0.00 36.84 2.75
534 569 7.129622 GCTTTCTATCCGTCAGATATAGATCG 58.870 42.308 0.00 0.00 36.84 3.69
535 570 7.555306 TTTCTATCCGTCAGATATAGATCGG 57.445 40.000 0.00 0.00 36.84 4.18
541 576 4.603231 GTCAGATATAGATCGGACGGTC 57.397 50.000 13.57 0.00 44.04 4.79
542 577 4.255301 GTCAGATATAGATCGGACGGTCT 58.745 47.826 13.57 12.50 44.04 3.85
543 578 5.417811 GTCAGATATAGATCGGACGGTCTA 58.582 45.833 16.04 16.04 44.04 2.59
544 579 6.050432 GTCAGATATAGATCGGACGGTCTAT 58.950 44.000 25.24 25.24 44.04 1.98
545 580 7.208777 GTCAGATATAGATCGGACGGTCTATA 58.791 42.308 27.21 27.21 44.04 1.31
546 581 7.874016 GTCAGATATAGATCGGACGGTCTATAT 59.126 40.741 31.81 31.81 46.01 0.86
547 582 8.430431 TCAGATATAGATCGGACGGTCTATATT 58.570 37.037 31.81 23.25 44.58 1.28
548 583 8.499967 CAGATATAGATCGGACGGTCTATATTG 58.500 40.741 31.81 27.07 44.58 1.90
549 584 3.851976 AGATCGGACGGTCTATATTGC 57.148 47.619 5.58 0.00 0.00 3.56
550 585 3.154710 AGATCGGACGGTCTATATTGCA 58.845 45.455 5.58 0.00 0.00 4.08
551 586 3.572682 AGATCGGACGGTCTATATTGCAA 59.427 43.478 5.58 0.00 0.00 4.08
552 587 3.364889 TCGGACGGTCTATATTGCAAG 57.635 47.619 4.94 0.00 0.00 4.01
553 588 1.792949 CGGACGGTCTATATTGCAAGC 59.207 52.381 4.94 0.00 0.00 4.01
554 589 2.545952 CGGACGGTCTATATTGCAAGCT 60.546 50.000 4.94 0.00 0.00 3.74
555 590 3.305131 CGGACGGTCTATATTGCAAGCTA 60.305 47.826 4.94 0.00 0.00 3.32
556 591 4.238514 GGACGGTCTATATTGCAAGCTAG 58.761 47.826 4.94 8.39 0.00 3.42
557 592 3.654414 ACGGTCTATATTGCAAGCTAGC 58.346 45.455 6.62 6.62 0.00 3.42
558 593 3.322254 ACGGTCTATATTGCAAGCTAGCT 59.678 43.478 12.68 12.68 34.99 3.32
559 594 3.677121 CGGTCTATATTGCAAGCTAGCTG 59.323 47.826 20.16 13.51 34.99 4.24
560 595 3.999663 GGTCTATATTGCAAGCTAGCTGG 59.000 47.826 20.16 17.64 34.99 4.85
561 596 3.434984 GTCTATATTGCAAGCTAGCTGGC 59.565 47.826 33.36 33.36 43.09 4.85
564 599 2.431244 TGCAAGCTAGCTGGCACA 59.569 55.556 37.60 20.29 46.97 4.57
565 600 1.968017 TGCAAGCTAGCTGGCACAC 60.968 57.895 37.60 14.38 46.97 3.82
566 601 2.694760 GCAAGCTAGCTGGCACACC 61.695 63.158 34.62 8.51 42.37 4.16
567 602 1.302752 CAAGCTAGCTGGCACACCA 60.303 57.895 24.99 0.00 46.51 4.17
577 612 2.510928 TGGCACACCATCATCATCAA 57.489 45.000 0.00 0.00 42.67 2.57
578 613 2.093890 TGGCACACCATCATCATCAAC 58.906 47.619 0.00 0.00 42.67 3.18
579 614 2.291089 TGGCACACCATCATCATCAACT 60.291 45.455 0.00 0.00 42.67 3.16
580 615 2.357009 GGCACACCATCATCATCAACTC 59.643 50.000 0.00 0.00 35.26 3.01
581 616 2.031314 GCACACCATCATCATCAACTCG 59.969 50.000 0.00 0.00 0.00 4.18
582 617 2.031314 CACACCATCATCATCAACTCGC 59.969 50.000 0.00 0.00 0.00 5.03
583 618 2.093288 ACACCATCATCATCAACTCGCT 60.093 45.455 0.00 0.00 0.00 4.93
584 619 2.941064 CACCATCATCATCAACTCGCTT 59.059 45.455 0.00 0.00 0.00 4.68
585 620 3.376234 CACCATCATCATCAACTCGCTTT 59.624 43.478 0.00 0.00 0.00 3.51
586 621 3.376234 ACCATCATCATCAACTCGCTTTG 59.624 43.478 0.00 0.00 0.00 2.77
587 622 3.376234 CCATCATCATCAACTCGCTTTGT 59.624 43.478 0.00 0.00 0.00 2.83
588 623 4.142534 CCATCATCATCAACTCGCTTTGTT 60.143 41.667 0.00 0.00 0.00 2.83
589 624 5.065090 CCATCATCATCAACTCGCTTTGTTA 59.935 40.000 0.00 0.00 0.00 2.41
590 625 6.238566 CCATCATCATCAACTCGCTTTGTTAT 60.239 38.462 0.00 0.00 0.00 1.89
591 626 7.041848 CCATCATCATCAACTCGCTTTGTTATA 60.042 37.037 0.00 0.00 0.00 0.98
592 627 7.841915 TCATCATCAACTCGCTTTGTTATAA 57.158 32.000 0.00 0.00 0.00 0.98
593 628 7.909267 TCATCATCAACTCGCTTTGTTATAAG 58.091 34.615 0.00 0.00 0.00 1.73
594 629 7.763985 TCATCATCAACTCGCTTTGTTATAAGA 59.236 33.333 0.00 0.00 0.00 2.10
595 630 7.525688 TCATCAACTCGCTTTGTTATAAGAG 57.474 36.000 0.00 0.00 0.00 2.85
596 631 7.097192 TCATCAACTCGCTTTGTTATAAGAGT 58.903 34.615 0.00 0.00 40.22 3.24
597 632 8.248253 TCATCAACTCGCTTTGTTATAAGAGTA 58.752 33.333 3.92 0.00 37.90 2.59
598 633 8.535592 CATCAACTCGCTTTGTTATAAGAGTAG 58.464 37.037 3.92 0.00 37.90 2.57
599 634 7.823665 TCAACTCGCTTTGTTATAAGAGTAGA 58.176 34.615 3.92 0.00 37.90 2.59
600 635 7.968956 TCAACTCGCTTTGTTATAAGAGTAGAG 59.031 37.037 3.92 8.65 37.90 2.43
602 637 7.474190 ACTCGCTTTGTTATAAGAGTAGAGAC 58.526 38.462 15.95 0.00 37.21 3.36
605 640 7.336176 TCGCTTTGTTATAAGAGTAGAGACAGA 59.664 37.037 0.00 0.00 0.00 3.41
606 641 7.642194 CGCTTTGTTATAAGAGTAGAGACAGAG 59.358 40.741 0.00 0.00 0.00 3.35
787 824 2.678934 TCTCCCCCACCGTCTTCG 60.679 66.667 0.00 0.00 0.00 3.79
789 826 2.524887 TCCCCCACCGTCTTCGTT 60.525 61.111 0.00 0.00 35.01 3.85
797 834 1.374252 CCGTCTTCGTTCCACCAGG 60.374 63.158 0.00 0.00 35.01 4.45
802 839 2.989055 CTTCGTTCCACCAGGCGTGT 62.989 60.000 5.57 0.00 41.26 4.49
808 845 2.111043 CACCAGGCGTGTGGACTT 59.889 61.111 11.66 0.00 40.44 3.01
852 889 3.747299 GCGATCGATCAGACGCGC 61.747 66.667 24.40 17.29 44.54 6.86
853 890 3.445149 CGATCGATCAGACGCGCG 61.445 66.667 30.96 30.96 0.00 6.86
854 891 3.747299 GATCGATCAGACGCGCGC 61.747 66.667 32.58 23.91 0.00 6.86
883 934 1.402968 GGAACGGATATATAGCGCCGA 59.597 52.381 21.31 0.00 46.29 5.54
884 935 2.034305 GGAACGGATATATAGCGCCGAT 59.966 50.000 21.31 13.40 46.29 4.18
980 1031 0.253894 TCGTCCGATCCTACTGTGGA 59.746 55.000 0.00 0.00 40.82 4.02
982 1033 1.765230 GTCCGATCCTACTGTGGACT 58.235 55.000 6.48 0.00 44.47 3.85
983 1034 1.405821 GTCCGATCCTACTGTGGACTG 59.594 57.143 6.48 1.10 44.47 3.51
984 1035 1.005569 TCCGATCCTACTGTGGACTGT 59.994 52.381 0.00 0.00 39.17 3.55
986 1037 1.135139 CGATCCTACTGTGGACTGTGG 59.865 57.143 0.00 0.00 39.17 4.17
988 1039 1.338107 TCCTACTGTGGACTGTGGTG 58.662 55.000 0.00 0.00 0.00 4.17
989 1040 0.321671 CCTACTGTGGACTGTGGTGG 59.678 60.000 0.00 0.00 0.00 4.61
1043 1095 2.351244 TGCTCTGGCCGGAGTACTG 61.351 63.158 36.38 17.27 37.74 2.74
1083 1135 2.095415 CGACGATGACCAGTACAAGACA 60.095 50.000 0.00 0.00 0.00 3.41
1090 1142 1.736645 CAGTACAAGACACCGGCGG 60.737 63.158 27.06 27.06 0.00 6.13
1111 1166 2.507769 CATCGAGCGTGCAGAGCA 60.508 61.111 15.39 0.00 37.01 4.26
1208 1269 1.067635 GCTACGGTGGAAAGACGGTAA 60.068 52.381 0.00 0.00 32.96 2.85
1210 1271 3.181487 GCTACGGTGGAAAGACGGTAATA 60.181 47.826 0.00 0.00 32.96 0.98
1211 1272 3.236632 ACGGTGGAAAGACGGTAATAC 57.763 47.619 0.00 0.00 0.00 1.89
1212 1273 2.094026 ACGGTGGAAAGACGGTAATACC 60.094 50.000 0.00 0.00 34.05 2.73
1242 1306 4.452733 GTGGAGAAGGACGGCGGG 62.453 72.222 13.24 0.00 0.00 6.13
1428 1495 2.060326 TCGAAGGATGACACGTTGAC 57.940 50.000 0.00 0.00 0.00 3.18
1429 1496 1.338655 TCGAAGGATGACACGTTGACA 59.661 47.619 0.00 0.00 0.00 3.58
1430 1497 1.455786 CGAAGGATGACACGTTGACAC 59.544 52.381 0.00 0.00 0.00 3.67
1488 1640 6.747659 ACACGTGCATAAATTTCTCAAAAC 57.252 33.333 17.22 0.00 0.00 2.43
1531 1692 5.263968 ACGAATGTTATCAGAGTACCCAG 57.736 43.478 0.00 0.00 0.00 4.45
1537 1698 5.475719 TGTTATCAGAGTACCCAGAAAACG 58.524 41.667 0.00 0.00 0.00 3.60
1544 1705 1.944709 GTACCCAGAAAACGTGTTGCT 59.055 47.619 0.00 0.00 0.00 3.91
1545 1706 2.335316 ACCCAGAAAACGTGTTGCTA 57.665 45.000 0.00 0.00 0.00 3.49
1546 1707 1.944709 ACCCAGAAAACGTGTTGCTAC 59.055 47.619 0.00 0.00 0.00 3.58
1547 1708 2.218603 CCCAGAAAACGTGTTGCTACT 58.781 47.619 0.00 0.00 0.00 2.57
1548 1709 2.616842 CCCAGAAAACGTGTTGCTACTT 59.383 45.455 0.00 0.00 0.00 2.24
1549 1710 3.548014 CCCAGAAAACGTGTTGCTACTTG 60.548 47.826 0.00 0.00 0.00 3.16
1550 1711 3.035942 CAGAAAACGTGTTGCTACTTGC 58.964 45.455 0.00 0.00 43.25 4.01
1551 1712 2.943033 AGAAAACGTGTTGCTACTTGCT 59.057 40.909 0.00 0.00 43.37 3.91
1552 1713 4.025229 CAGAAAACGTGTTGCTACTTGCTA 60.025 41.667 0.00 0.00 43.37 3.49
1570 1731 7.904205 ACTTGCTATAGTACTACCAGTTTGTT 58.096 34.615 4.31 0.00 0.00 2.83
1588 1749 9.146984 CAGTTTGTTAGTATCGGTTAATGAGAA 57.853 33.333 0.00 0.00 0.00 2.87
1590 1751 9.916397 GTTTGTTAGTATCGGTTAATGAGAATG 57.084 33.333 0.00 0.00 0.00 2.67
1613 1783 3.303791 GCACCAAGTTTCGAACCTACTTG 60.304 47.826 24.62 24.62 45.15 3.16
1630 1800 2.490115 ACTTGTCTTGCCGTGTGAAAAA 59.510 40.909 0.00 0.00 0.00 1.94
1693 1868 2.503356 CCACACTAAAGCTCATCCCTCT 59.497 50.000 0.00 0.00 0.00 3.69
1713 1895 5.300969 TCTACGCACGTTCTTACTACATT 57.699 39.130 0.00 0.00 0.00 2.71
1715 1897 3.248266 ACGCACGTTCTTACTACATTCC 58.752 45.455 0.00 0.00 0.00 3.01
1719 1901 5.560148 GCACGTTCTTACTACATTCCAATG 58.440 41.667 0.00 0.00 42.10 2.82
1732 1947 5.957798 ACATTCCAATGAGCACAACAATAG 58.042 37.500 6.29 0.00 39.67 1.73
1744 1959 0.606604 AACAATAGTCCGTGGCTCGT 59.393 50.000 8.25 0.00 37.94 4.18
1751 1966 4.514577 CCGTGGCTCGTAGGGCTG 62.515 72.222 8.25 0.00 37.94 4.85
1854 2069 0.321653 CTCAACCCCTTCCTTCACGG 60.322 60.000 0.00 0.00 0.00 4.94
1855 2070 1.971695 CAACCCCTTCCTTCACGGC 60.972 63.158 0.00 0.00 0.00 5.68
1856 2071 3.205851 AACCCCTTCCTTCACGGCC 62.206 63.158 0.00 0.00 0.00 6.13
1857 2072 3.646715 CCCCTTCCTTCACGGCCA 61.647 66.667 2.24 0.00 0.00 5.36
1976 2200 1.519719 CCAGCTTCTCCCTCTTCCG 59.480 63.158 0.00 0.00 0.00 4.30
2013 2237 1.264557 CTCCGCTCGCTATATATCCCG 59.735 57.143 0.00 0.00 0.00 5.14
2073 2297 3.958860 CCGGGGAGGCCATGGATC 61.959 72.222 18.40 12.50 0.00 3.36
2111 2335 2.741092 GACGTCCTCTGGCCACAA 59.259 61.111 0.00 0.00 0.00 3.33
2313 2546 3.630148 GCGATGTCCGATGCACCG 61.630 66.667 0.00 0.00 41.76 4.94
2354 2587 4.680237 CCGCACGTCCTGGCTGAA 62.680 66.667 0.00 0.00 0.00 3.02
2404 2637 1.815421 CGGCCTACTCCATGTGCAC 60.815 63.158 10.75 10.75 0.00 4.57
2408 2641 1.815421 CTACTCCATGTGCACCGGC 60.815 63.158 15.69 0.00 41.68 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.373116 GACGCGCACAGGAAGGGA 62.373 66.667 5.73 0.00 0.00 4.20
85 87 1.132640 GCGCGTCAGATCAACCAAC 59.867 57.895 8.43 0.00 0.00 3.77
108 143 1.537348 CGACCGAATATTTCAGGCCGA 60.537 52.381 0.00 0.00 33.70 5.54
165 200 2.528743 CGTGCGGGCATCTTGCTAG 61.529 63.158 0.00 0.00 44.28 3.42
166 201 2.511373 CGTGCGGGCATCTTGCTA 60.511 61.111 0.00 0.00 44.28 3.49
169 204 2.745884 TTCCGTGCGGGCATCTTG 60.746 61.111 10.94 0.00 34.94 3.02
170 205 2.746277 GTTCCGTGCGGGCATCTT 60.746 61.111 10.94 0.00 34.94 2.40
171 206 4.015406 TGTTCCGTGCGGGCATCT 62.015 61.111 10.94 0.00 34.94 2.90
172 207 3.799755 GTGTTCCGTGCGGGCATC 61.800 66.667 10.94 0.51 34.94 3.91
176 211 3.411351 CTTCGTGTTCCGTGCGGG 61.411 66.667 10.94 0.00 37.94 6.13
177 212 1.736645 ATCTTCGTGTTCCGTGCGG 60.737 57.895 3.94 3.94 37.94 5.69
178 213 1.416049 CATCTTCGTGTTCCGTGCG 59.584 57.895 0.00 0.00 37.94 5.34
179 214 1.132640 GCATCTTCGTGTTCCGTGC 59.867 57.895 0.00 0.00 37.94 5.34
180 215 1.078709 ATGCATCTTCGTGTTCCGTG 58.921 50.000 0.00 0.00 37.94 4.94
181 216 1.808411 AATGCATCTTCGTGTTCCGT 58.192 45.000 0.00 0.00 37.94 4.69
182 217 2.900122 AAATGCATCTTCGTGTTCCG 57.100 45.000 0.00 0.00 38.13 4.30
213 248 2.816087 GCATGAGTCAATCACAACAGGT 59.184 45.455 0.00 0.00 41.91 4.00
214 249 2.159612 CGCATGAGTCAATCACAACAGG 60.160 50.000 0.00 0.00 41.91 4.00
215 250 2.159612 CCGCATGAGTCAATCACAACAG 60.160 50.000 0.00 0.00 41.91 3.16
216 251 1.805943 CCGCATGAGTCAATCACAACA 59.194 47.619 0.00 0.00 41.91 3.33
217 252 1.131126 CCCGCATGAGTCAATCACAAC 59.869 52.381 0.00 0.00 41.91 3.32
218 253 1.003003 TCCCGCATGAGTCAATCACAA 59.997 47.619 0.00 0.00 41.91 3.33
219 254 0.612744 TCCCGCATGAGTCAATCACA 59.387 50.000 0.00 0.00 41.91 3.58
220 255 1.293924 CTCCCGCATGAGTCAATCAC 58.706 55.000 0.00 0.00 41.91 3.06
221 256 0.904649 ACTCCCGCATGAGTCAATCA 59.095 50.000 0.00 0.00 41.75 2.57
222 257 2.890808 TACTCCCGCATGAGTCAATC 57.109 50.000 8.29 0.00 44.30 2.67
223 258 3.495100 GGATTACTCCCGCATGAGTCAAT 60.495 47.826 8.29 7.40 44.30 2.57
224 259 2.158957 GGATTACTCCCGCATGAGTCAA 60.159 50.000 8.29 3.63 44.30 3.18
225 260 1.412710 GGATTACTCCCGCATGAGTCA 59.587 52.381 8.29 0.00 44.30 3.41
226 261 2.156343 GGATTACTCCCGCATGAGTC 57.844 55.000 8.29 0.00 44.30 3.36
236 271 8.570068 TTAGTTTTTACACATGGGATTACTCC 57.430 34.615 0.00 0.00 41.26 3.85
238 273 9.747898 TCATTAGTTTTTACACATGGGATTACT 57.252 29.630 0.00 0.12 0.00 2.24
265 300 9.653516 ACCTTATCTCTCATCTTTCTCAAGATA 57.346 33.333 0.00 0.00 46.44 1.98
267 302 7.617329 TCACCTTATCTCTCATCTTTCTCAAGA 59.383 37.037 0.00 0.00 43.45 3.02
268 303 7.780064 TCACCTTATCTCTCATCTTTCTCAAG 58.220 38.462 0.00 0.00 0.00 3.02
269 304 7.147759 CCTCACCTTATCTCTCATCTTTCTCAA 60.148 40.741 0.00 0.00 0.00 3.02
270 305 6.323482 CCTCACCTTATCTCTCATCTTTCTCA 59.677 42.308 0.00 0.00 0.00 3.27
271 306 6.549364 TCCTCACCTTATCTCTCATCTTTCTC 59.451 42.308 0.00 0.00 0.00 2.87
272 307 6.439487 TCCTCACCTTATCTCTCATCTTTCT 58.561 40.000 0.00 0.00 0.00 2.52
273 308 6.239289 CCTCCTCACCTTATCTCTCATCTTTC 60.239 46.154 0.00 0.00 0.00 2.62
274 309 5.602145 CCTCCTCACCTTATCTCTCATCTTT 59.398 44.000 0.00 0.00 0.00 2.52
275 310 5.103301 TCCTCCTCACCTTATCTCTCATCTT 60.103 44.000 0.00 0.00 0.00 2.40
276 311 4.418526 TCCTCCTCACCTTATCTCTCATCT 59.581 45.833 0.00 0.00 0.00 2.90
277 312 4.735369 TCCTCCTCACCTTATCTCTCATC 58.265 47.826 0.00 0.00 0.00 2.92
278 313 4.169856 ACTCCTCCTCACCTTATCTCTCAT 59.830 45.833 0.00 0.00 0.00 2.90
279 314 3.529734 ACTCCTCCTCACCTTATCTCTCA 59.470 47.826 0.00 0.00 0.00 3.27
280 315 3.888930 CACTCCTCCTCACCTTATCTCTC 59.111 52.174 0.00 0.00 0.00 3.20
281 316 3.373658 CCACTCCTCCTCACCTTATCTCT 60.374 52.174 0.00 0.00 0.00 3.10
282 317 2.962421 CCACTCCTCCTCACCTTATCTC 59.038 54.545 0.00 0.00 0.00 2.75
283 318 2.359781 CCCACTCCTCCTCACCTTATCT 60.360 54.545 0.00 0.00 0.00 1.98
284 319 2.043227 CCCACTCCTCCTCACCTTATC 58.957 57.143 0.00 0.00 0.00 1.75
285 320 1.651770 TCCCACTCCTCCTCACCTTAT 59.348 52.381 0.00 0.00 0.00 1.73
286 321 1.089978 TCCCACTCCTCCTCACCTTA 58.910 55.000 0.00 0.00 0.00 2.69
287 322 0.545548 GTCCCACTCCTCCTCACCTT 60.546 60.000 0.00 0.00 0.00 3.50
288 323 1.079438 GTCCCACTCCTCCTCACCT 59.921 63.158 0.00 0.00 0.00 4.00
289 324 2.352032 CGTCCCACTCCTCCTCACC 61.352 68.421 0.00 0.00 0.00 4.02
290 325 1.606889 ACGTCCCACTCCTCCTCAC 60.607 63.158 0.00 0.00 0.00 3.51
291 326 1.606601 CACGTCCCACTCCTCCTCA 60.607 63.158 0.00 0.00 0.00 3.86
292 327 2.352032 CCACGTCCCACTCCTCCTC 61.352 68.421 0.00 0.00 0.00 3.71
293 328 2.283966 CCACGTCCCACTCCTCCT 60.284 66.667 0.00 0.00 0.00 3.69
294 329 2.603776 ACCACGTCCCACTCCTCC 60.604 66.667 0.00 0.00 0.00 4.30
295 330 2.657237 CACCACGTCCCACTCCTC 59.343 66.667 0.00 0.00 0.00 3.71
296 331 2.923035 CCACCACGTCCCACTCCT 60.923 66.667 0.00 0.00 0.00 3.69
297 332 3.239253 ACCACCACGTCCCACTCC 61.239 66.667 0.00 0.00 0.00 3.85
298 333 1.827399 ATCACCACCACGTCCCACTC 61.827 60.000 0.00 0.00 0.00 3.51
299 334 1.415672 AATCACCACCACGTCCCACT 61.416 55.000 0.00 0.00 0.00 4.00
300 335 1.072505 AATCACCACCACGTCCCAC 59.927 57.895 0.00 0.00 0.00 4.61
301 336 1.072332 CAATCACCACCACGTCCCA 59.928 57.895 0.00 0.00 0.00 4.37
302 337 1.674322 CCAATCACCACCACGTCCC 60.674 63.158 0.00 0.00 0.00 4.46
303 338 1.072505 ACCAATCACCACCACGTCC 59.927 57.895 0.00 0.00 0.00 4.79
304 339 1.234615 CCACCAATCACCACCACGTC 61.235 60.000 0.00 0.00 0.00 4.34
305 340 1.228124 CCACCAATCACCACCACGT 60.228 57.895 0.00 0.00 0.00 4.49
306 341 0.821711 AACCACCAATCACCACCACG 60.822 55.000 0.00 0.00 0.00 4.94
307 342 0.673437 CAACCACCAATCACCACCAC 59.327 55.000 0.00 0.00 0.00 4.16
308 343 0.468958 CCAACCACCAATCACCACCA 60.469 55.000 0.00 0.00 0.00 4.17
309 344 0.178975 TCCAACCACCAATCACCACC 60.179 55.000 0.00 0.00 0.00 4.61
310 345 0.958822 GTCCAACCACCAATCACCAC 59.041 55.000 0.00 0.00 0.00 4.16
311 346 0.850100 AGTCCAACCACCAATCACCA 59.150 50.000 0.00 0.00 0.00 4.17
312 347 1.202879 TCAGTCCAACCACCAATCACC 60.203 52.381 0.00 0.00 0.00 4.02
313 348 2.154462 CTCAGTCCAACCACCAATCAC 58.846 52.381 0.00 0.00 0.00 3.06
314 349 1.545428 GCTCAGTCCAACCACCAATCA 60.545 52.381 0.00 0.00 0.00 2.57
315 350 1.168714 GCTCAGTCCAACCACCAATC 58.831 55.000 0.00 0.00 0.00 2.67
316 351 0.606401 CGCTCAGTCCAACCACCAAT 60.606 55.000 0.00 0.00 0.00 3.16
317 352 1.227823 CGCTCAGTCCAACCACCAA 60.228 57.895 0.00 0.00 0.00 3.67
318 353 2.425592 CGCTCAGTCCAACCACCA 59.574 61.111 0.00 0.00 0.00 4.17
319 354 2.358737 CCGCTCAGTCCAACCACC 60.359 66.667 0.00 0.00 0.00 4.61
320 355 1.374758 CTCCGCTCAGTCCAACCAC 60.375 63.158 0.00 0.00 0.00 4.16
321 356 2.583441 CCTCCGCTCAGTCCAACCA 61.583 63.158 0.00 0.00 0.00 3.67
322 357 2.266055 CCTCCGCTCAGTCCAACC 59.734 66.667 0.00 0.00 0.00 3.77
323 358 2.435059 GCCTCCGCTCAGTCCAAC 60.435 66.667 0.00 0.00 0.00 3.77
324 359 2.293318 ATGCCTCCGCTCAGTCCAA 61.293 57.895 0.00 0.00 35.36 3.53
325 360 2.685017 ATGCCTCCGCTCAGTCCA 60.685 61.111 0.00 0.00 35.36 4.02
326 361 2.202987 CATGCCTCCGCTCAGTCC 60.203 66.667 0.00 0.00 35.36 3.85
327 362 2.202987 CCATGCCTCCGCTCAGTC 60.203 66.667 0.00 0.00 35.36 3.51
328 363 3.790437 CCCATGCCTCCGCTCAGT 61.790 66.667 0.00 0.00 35.36 3.41
329 364 2.815945 ATCCCATGCCTCCGCTCAG 61.816 63.158 0.00 0.00 35.36 3.35
330 365 2.769621 ATCCCATGCCTCCGCTCA 60.770 61.111 0.00 0.00 35.36 4.26
331 366 2.281345 CATCCCATGCCTCCGCTC 60.281 66.667 0.00 0.00 35.36 5.03
332 367 3.882326 CCATCCCATGCCTCCGCT 61.882 66.667 0.00 0.00 35.36 5.52
333 368 3.877450 TCCATCCCATGCCTCCGC 61.877 66.667 0.00 0.00 0.00 5.54
334 369 2.111878 GTCCATCCCATGCCTCCG 59.888 66.667 0.00 0.00 0.00 4.63
335 370 2.111878 CGTCCATCCCATGCCTCC 59.888 66.667 0.00 0.00 0.00 4.30
336 371 1.227674 GTCGTCCATCCCATGCCTC 60.228 63.158 0.00 0.00 0.00 4.70
337 372 1.995066 TGTCGTCCATCCCATGCCT 60.995 57.895 0.00 0.00 0.00 4.75
338 373 1.819632 GTGTCGTCCATCCCATGCC 60.820 63.158 0.00 0.00 0.00 4.40
339 374 1.819632 GGTGTCGTCCATCCCATGC 60.820 63.158 0.00 0.00 0.00 4.06
340 375 1.521457 CGGTGTCGTCCATCCCATG 60.521 63.158 0.00 0.00 0.00 3.66
341 376 2.731571 CCGGTGTCGTCCATCCCAT 61.732 63.158 0.00 0.00 33.95 4.00
342 377 3.387091 CCGGTGTCGTCCATCCCA 61.387 66.667 0.00 0.00 33.95 4.37
343 378 4.832608 GCCGGTGTCGTCCATCCC 62.833 72.222 1.90 0.00 33.95 3.85
344 379 4.077184 TGCCGGTGTCGTCCATCC 62.077 66.667 1.90 0.00 33.95 3.51
345 380 2.509336 CTGCCGGTGTCGTCCATC 60.509 66.667 1.90 0.00 33.95 3.51
346 381 4.760047 GCTGCCGGTGTCGTCCAT 62.760 66.667 1.90 0.00 33.95 3.41
365 400 1.135721 GGAACAATCTGGCAAGATGGC 59.864 52.381 3.78 0.00 42.60 4.40
366 401 2.426024 CTGGAACAATCTGGCAAGATGG 59.574 50.000 3.78 3.72 42.60 3.51
367 402 3.349927 TCTGGAACAATCTGGCAAGATG 58.650 45.455 3.78 1.79 42.60 2.90
368 403 3.618351 CTCTGGAACAATCTGGCAAGAT 58.382 45.455 0.00 0.00 45.48 2.40
369 404 2.290514 CCTCTGGAACAATCTGGCAAGA 60.291 50.000 0.00 0.00 38.70 3.02
370 405 2.089980 CCTCTGGAACAATCTGGCAAG 58.910 52.381 0.00 0.00 38.70 4.01
371 406 1.887956 GCCTCTGGAACAATCTGGCAA 60.888 52.381 0.00 0.00 38.70 4.52
372 407 0.322816 GCCTCTGGAACAATCTGGCA 60.323 55.000 0.00 0.00 38.70 4.92
373 408 0.034670 AGCCTCTGGAACAATCTGGC 60.035 55.000 0.00 0.00 38.70 4.85
374 409 2.363683 GAAGCCTCTGGAACAATCTGG 58.636 52.381 0.00 0.00 38.70 3.86
375 410 2.026449 AGGAAGCCTCTGGAACAATCTG 60.026 50.000 0.00 0.00 38.70 2.90
376 411 2.273619 AGGAAGCCTCTGGAACAATCT 58.726 47.619 0.00 0.00 38.70 2.40
377 412 2.797177 AGGAAGCCTCTGGAACAATC 57.203 50.000 0.00 0.00 38.70 2.67
378 413 3.532641 AAAGGAAGCCTCTGGAACAAT 57.467 42.857 0.00 0.00 30.54 2.71
379 414 3.312736 AAAAGGAAGCCTCTGGAACAA 57.687 42.857 0.00 0.00 30.54 2.83
380 415 3.312736 AAAAAGGAAGCCTCTGGAACA 57.687 42.857 0.00 0.00 30.89 3.18
412 447 7.713942 TCATCCTTATCTCACACAATCTCATTG 59.286 37.037 0.00 0.00 45.59 2.82
413 448 7.799081 TCATCCTTATCTCACACAATCTCATT 58.201 34.615 0.00 0.00 0.00 2.57
414 449 7.370905 TCATCCTTATCTCACACAATCTCAT 57.629 36.000 0.00 0.00 0.00 2.90
415 450 6.796785 TCATCCTTATCTCACACAATCTCA 57.203 37.500 0.00 0.00 0.00 3.27
416 451 6.199908 CGTTCATCCTTATCTCACACAATCTC 59.800 42.308 0.00 0.00 0.00 2.75
417 452 6.045318 CGTTCATCCTTATCTCACACAATCT 58.955 40.000 0.00 0.00 0.00 2.40
418 453 6.042777 TCGTTCATCCTTATCTCACACAATC 58.957 40.000 0.00 0.00 0.00 2.67
419 454 5.977635 TCGTTCATCCTTATCTCACACAAT 58.022 37.500 0.00 0.00 0.00 2.71
420 455 5.400066 TCGTTCATCCTTATCTCACACAA 57.600 39.130 0.00 0.00 0.00 3.33
421 456 5.400066 TTCGTTCATCCTTATCTCACACA 57.600 39.130 0.00 0.00 0.00 3.72
422 457 4.806247 CCTTCGTTCATCCTTATCTCACAC 59.194 45.833 0.00 0.00 0.00 3.82
423 458 4.709886 TCCTTCGTTCATCCTTATCTCACA 59.290 41.667 0.00 0.00 0.00 3.58
424 459 5.263968 TCCTTCGTTCATCCTTATCTCAC 57.736 43.478 0.00 0.00 0.00 3.51
425 460 5.932619 TTCCTTCGTTCATCCTTATCTCA 57.067 39.130 0.00 0.00 0.00 3.27
426 461 5.178438 GCATTCCTTCGTTCATCCTTATCTC 59.822 44.000 0.00 0.00 0.00 2.75
427 462 5.059833 GCATTCCTTCGTTCATCCTTATCT 58.940 41.667 0.00 0.00 0.00 1.98
428 463 4.214332 GGCATTCCTTCGTTCATCCTTATC 59.786 45.833 0.00 0.00 0.00 1.75
429 464 4.137543 GGCATTCCTTCGTTCATCCTTAT 58.862 43.478 0.00 0.00 0.00 1.73
430 465 3.199946 AGGCATTCCTTCGTTCATCCTTA 59.800 43.478 0.00 0.00 40.66 2.69
431 466 2.025887 AGGCATTCCTTCGTTCATCCTT 60.026 45.455 0.00 0.00 40.66 3.36
432 467 1.561542 AGGCATTCCTTCGTTCATCCT 59.438 47.619 0.00 0.00 40.66 3.24
433 468 2.044123 AGGCATTCCTTCGTTCATCC 57.956 50.000 0.00 0.00 40.66 3.51
444 479 4.365723 CACATTTGCAGATAAGGCATTCC 58.634 43.478 0.00 0.00 41.58 3.01
445 480 4.098349 TCCACATTTGCAGATAAGGCATTC 59.902 41.667 0.00 0.00 41.58 2.67
446 481 4.025360 TCCACATTTGCAGATAAGGCATT 58.975 39.130 0.00 0.00 41.58 3.56
447 482 3.634504 TCCACATTTGCAGATAAGGCAT 58.365 40.909 0.00 0.00 41.58 4.40
448 483 3.084536 TCCACATTTGCAGATAAGGCA 57.915 42.857 0.00 0.00 40.00 4.75
449 484 4.158394 TCTTTCCACATTTGCAGATAAGGC 59.842 41.667 0.00 0.00 0.00 4.35
450 485 5.163581 CCTCTTTCCACATTTGCAGATAAGG 60.164 44.000 0.00 0.00 0.00 2.69
451 486 5.416952 ACCTCTTTCCACATTTGCAGATAAG 59.583 40.000 0.00 0.00 0.00 1.73
452 487 5.183713 CACCTCTTTCCACATTTGCAGATAA 59.816 40.000 0.00 0.00 0.00 1.75
453 488 4.701651 CACCTCTTTCCACATTTGCAGATA 59.298 41.667 0.00 0.00 0.00 1.98
454 489 3.508793 CACCTCTTTCCACATTTGCAGAT 59.491 43.478 0.00 0.00 0.00 2.90
455 490 2.886523 CACCTCTTTCCACATTTGCAGA 59.113 45.455 0.00 0.00 0.00 4.26
456 491 2.608752 GCACCTCTTTCCACATTTGCAG 60.609 50.000 0.00 0.00 0.00 4.41
457 492 1.340889 GCACCTCTTTCCACATTTGCA 59.659 47.619 0.00 0.00 0.00 4.08
458 493 1.666888 CGCACCTCTTTCCACATTTGC 60.667 52.381 0.00 0.00 0.00 3.68
459 494 1.068333 CCGCACCTCTTTCCACATTTG 60.068 52.381 0.00 0.00 0.00 2.32
460 495 1.247567 CCGCACCTCTTTCCACATTT 58.752 50.000 0.00 0.00 0.00 2.32
461 496 0.609131 CCCGCACCTCTTTCCACATT 60.609 55.000 0.00 0.00 0.00 2.71
462 497 1.002134 CCCGCACCTCTTTCCACAT 60.002 57.895 0.00 0.00 0.00 3.21
463 498 1.122632 TACCCGCACCTCTTTCCACA 61.123 55.000 0.00 0.00 0.00 4.17
464 499 0.252197 ATACCCGCACCTCTTTCCAC 59.748 55.000 0.00 0.00 0.00 4.02
465 500 0.251916 CATACCCGCACCTCTTTCCA 59.748 55.000 0.00 0.00 0.00 3.53
466 501 0.252197 ACATACCCGCACCTCTTTCC 59.748 55.000 0.00 0.00 0.00 3.13
467 502 2.109425 AACATACCCGCACCTCTTTC 57.891 50.000 0.00 0.00 0.00 2.62
468 503 2.579410 AAACATACCCGCACCTCTTT 57.421 45.000 0.00 0.00 0.00 2.52
469 504 2.579410 AAAACATACCCGCACCTCTT 57.421 45.000 0.00 0.00 0.00 2.85
470 505 2.579410 AAAAACATACCCGCACCTCT 57.421 45.000 0.00 0.00 0.00 3.69
495 530 9.174166 ACGGATAGAAAGCAAACTATGTTAATT 57.826 29.630 0.00 0.00 30.74 1.40
496 531 8.732746 ACGGATAGAAAGCAAACTATGTTAAT 57.267 30.769 0.00 0.00 30.74 1.40
497 532 7.820386 TGACGGATAGAAAGCAAACTATGTTAA 59.180 33.333 0.00 0.00 30.74 2.01
498 533 7.324935 TGACGGATAGAAAGCAAACTATGTTA 58.675 34.615 0.00 0.00 30.74 2.41
499 534 6.170506 TGACGGATAGAAAGCAAACTATGTT 58.829 36.000 0.00 0.00 30.74 2.71
500 535 5.730550 TGACGGATAGAAAGCAAACTATGT 58.269 37.500 0.00 0.00 30.74 2.29
501 536 6.042777 TCTGACGGATAGAAAGCAAACTATG 58.957 40.000 0.00 0.00 30.74 2.23
502 537 6.222038 TCTGACGGATAGAAAGCAAACTAT 57.778 37.500 0.00 0.00 32.87 2.12
503 538 5.654603 TCTGACGGATAGAAAGCAAACTA 57.345 39.130 0.00 0.00 0.00 2.24
504 539 4.537135 TCTGACGGATAGAAAGCAAACT 57.463 40.909 0.00 0.00 0.00 2.66
505 540 8.082852 TCTATATCTGACGGATAGAAAGCAAAC 58.917 37.037 9.78 0.00 39.89 2.93
506 541 8.178313 TCTATATCTGACGGATAGAAAGCAAA 57.822 34.615 9.78 0.00 39.89 3.68
507 542 7.761038 TCTATATCTGACGGATAGAAAGCAA 57.239 36.000 9.78 0.00 39.89 3.91
508 543 7.201652 CGATCTATATCTGACGGATAGAAAGCA 60.202 40.741 9.78 0.44 39.89 3.91
509 544 7.129622 CGATCTATATCTGACGGATAGAAAGC 58.870 42.308 9.78 0.00 39.89 3.51
510 545 7.496263 TCCGATCTATATCTGACGGATAGAAAG 59.504 40.741 9.78 7.25 43.30 2.62
511 546 7.336396 TCCGATCTATATCTGACGGATAGAAA 58.664 38.462 9.78 0.00 43.30 2.52
512 547 6.885922 TCCGATCTATATCTGACGGATAGAA 58.114 40.000 9.78 0.63 43.30 2.10
513 548 6.481434 TCCGATCTATATCTGACGGATAGA 57.519 41.667 9.78 4.48 43.30 1.98
520 555 4.255301 AGACCGTCCGATCTATATCTGAC 58.745 47.826 0.00 3.47 40.83 3.51
521 556 4.554960 AGACCGTCCGATCTATATCTGA 57.445 45.455 0.00 0.00 0.00 3.27
522 557 8.499967 CAATATAGACCGTCCGATCTATATCTG 58.500 40.741 19.07 15.61 44.71 2.90
523 558 7.173562 GCAATATAGACCGTCCGATCTATATCT 59.826 40.741 19.07 10.15 44.71 1.98
524 559 7.041303 TGCAATATAGACCGTCCGATCTATATC 60.041 40.741 19.07 11.25 44.71 1.63
525 560 6.771267 TGCAATATAGACCGTCCGATCTATAT 59.229 38.462 14.93 14.93 46.24 0.86
526 561 6.117488 TGCAATATAGACCGTCCGATCTATA 58.883 40.000 12.02 12.02 42.05 1.31
527 562 4.948004 TGCAATATAGACCGTCCGATCTAT 59.052 41.667 8.53 8.53 40.47 1.98
528 563 4.329392 TGCAATATAGACCGTCCGATCTA 58.671 43.478 0.00 0.00 32.11 1.98
529 564 3.154710 TGCAATATAGACCGTCCGATCT 58.845 45.455 0.00 0.00 0.00 2.75
530 565 3.570926 TGCAATATAGACCGTCCGATC 57.429 47.619 0.00 0.00 0.00 3.69
531 566 3.861131 GCTTGCAATATAGACCGTCCGAT 60.861 47.826 0.00 0.00 0.00 4.18
532 567 2.545113 GCTTGCAATATAGACCGTCCGA 60.545 50.000 0.00 0.00 0.00 4.55
533 568 1.792949 GCTTGCAATATAGACCGTCCG 59.207 52.381 0.00 0.00 0.00 4.79
534 569 3.113260 AGCTTGCAATATAGACCGTCC 57.887 47.619 0.00 0.00 0.00 4.79
535 570 3.675698 GCTAGCTTGCAATATAGACCGTC 59.324 47.826 15.53 0.00 0.00 4.79
536 571 3.322254 AGCTAGCTTGCAATATAGACCGT 59.678 43.478 22.05 0.00 34.99 4.83
537 572 3.677121 CAGCTAGCTTGCAATATAGACCG 59.323 47.826 22.05 0.00 34.99 4.79
538 573 3.999663 CCAGCTAGCTTGCAATATAGACC 59.000 47.826 22.05 5.41 34.99 3.85
539 574 3.434984 GCCAGCTAGCTTGCAATATAGAC 59.565 47.826 30.25 0.00 35.16 2.59
540 575 3.071457 TGCCAGCTAGCTTGCAATATAGA 59.929 43.478 34.16 14.49 40.91 1.98
541 576 3.188048 GTGCCAGCTAGCTTGCAATATAG 59.812 47.826 36.72 14.37 44.46 1.31
542 577 3.141398 GTGCCAGCTAGCTTGCAATATA 58.859 45.455 36.72 17.44 44.46 0.86
543 578 1.952296 GTGCCAGCTAGCTTGCAATAT 59.048 47.619 36.72 3.96 44.46 1.28
544 579 1.339920 TGTGCCAGCTAGCTTGCAATA 60.340 47.619 36.72 27.29 44.46 1.90
545 580 0.609957 TGTGCCAGCTAGCTTGCAAT 60.610 50.000 36.72 5.53 44.46 3.56
546 581 1.228215 TGTGCCAGCTAGCTTGCAA 60.228 52.632 36.72 25.55 44.46 4.08
547 582 1.968017 GTGTGCCAGCTAGCTTGCA 60.968 57.895 33.05 33.05 41.47 4.08
548 583 2.694760 GGTGTGCCAGCTAGCTTGC 61.695 63.158 28.99 28.99 35.56 4.01
549 584 1.302752 TGGTGTGCCAGCTAGCTTG 60.303 57.895 16.46 13.65 40.46 4.01
550 585 3.160585 TGGTGTGCCAGCTAGCTT 58.839 55.556 16.46 0.00 40.46 3.74
559 594 2.357009 GAGTTGATGATGATGGTGTGCC 59.643 50.000 0.00 0.00 0.00 5.01
560 595 2.031314 CGAGTTGATGATGATGGTGTGC 59.969 50.000 0.00 0.00 0.00 4.57
561 596 2.031314 GCGAGTTGATGATGATGGTGTG 59.969 50.000 0.00 0.00 0.00 3.82
562 597 2.093288 AGCGAGTTGATGATGATGGTGT 60.093 45.455 0.00 0.00 0.00 4.16
563 598 2.558378 AGCGAGTTGATGATGATGGTG 58.442 47.619 0.00 0.00 0.00 4.17
564 599 2.996249 AGCGAGTTGATGATGATGGT 57.004 45.000 0.00 0.00 0.00 3.55
565 600 3.376234 ACAAAGCGAGTTGATGATGATGG 59.624 43.478 5.61 0.00 32.59 3.51
566 601 4.611310 ACAAAGCGAGTTGATGATGATG 57.389 40.909 5.61 0.00 32.59 3.07
567 602 6.932356 ATAACAAAGCGAGTTGATGATGAT 57.068 33.333 5.61 0.00 32.59 2.45
568 603 7.763985 TCTTATAACAAAGCGAGTTGATGATGA 59.236 33.333 5.61 0.00 32.59 2.92
569 604 7.909267 TCTTATAACAAAGCGAGTTGATGATG 58.091 34.615 5.61 0.00 32.59 3.07
570 605 7.766278 ACTCTTATAACAAAGCGAGTTGATGAT 59.234 33.333 5.61 0.00 32.59 2.45
571 606 7.097192 ACTCTTATAACAAAGCGAGTTGATGA 58.903 34.615 5.61 0.58 32.59 2.92
572 607 7.295952 ACTCTTATAACAAAGCGAGTTGATG 57.704 36.000 5.61 0.00 32.59 3.07
573 608 8.467598 TCTACTCTTATAACAAAGCGAGTTGAT 58.532 33.333 7.78 0.00 34.06 2.57
574 609 7.823665 TCTACTCTTATAACAAAGCGAGTTGA 58.176 34.615 7.78 8.46 34.06 3.18
575 610 7.968956 TCTCTACTCTTATAACAAAGCGAGTTG 59.031 37.037 7.78 6.72 34.06 3.16
576 611 7.969508 GTCTCTACTCTTATAACAAAGCGAGTT 59.030 37.037 7.78 0.00 34.06 3.01
577 612 7.120873 TGTCTCTACTCTTATAACAAAGCGAGT 59.879 37.037 7.65 7.65 35.98 4.18
578 613 7.473366 TGTCTCTACTCTTATAACAAAGCGAG 58.527 38.462 0.00 0.00 0.00 5.03
579 614 7.336176 TCTGTCTCTACTCTTATAACAAAGCGA 59.664 37.037 0.00 0.00 0.00 4.93
580 615 7.473366 TCTGTCTCTACTCTTATAACAAAGCG 58.527 38.462 0.00 0.00 0.00 4.68
581 616 8.679100 TCTCTGTCTCTACTCTTATAACAAAGC 58.321 37.037 0.00 0.00 0.00 3.51
588 623 9.688091 ACACATTTCTCTGTCTCTACTCTTATA 57.312 33.333 0.00 0.00 0.00 0.98
589 624 8.588290 ACACATTTCTCTGTCTCTACTCTTAT 57.412 34.615 0.00 0.00 0.00 1.73
590 625 7.665974 TGACACATTTCTCTGTCTCTACTCTTA 59.334 37.037 0.00 0.00 38.12 2.10
591 626 6.491745 TGACACATTTCTCTGTCTCTACTCTT 59.508 38.462 0.00 0.00 38.12 2.85
592 627 6.007076 TGACACATTTCTCTGTCTCTACTCT 58.993 40.000 0.00 0.00 38.12 3.24
593 628 6.090129 GTGACACATTTCTCTGTCTCTACTC 58.910 44.000 0.00 0.00 38.12 2.59
594 629 5.335269 CGTGACACATTTCTCTGTCTCTACT 60.335 44.000 6.37 0.00 38.12 2.57
595 630 4.854291 CGTGACACATTTCTCTGTCTCTAC 59.146 45.833 6.37 0.00 38.12 2.59
596 631 4.519350 ACGTGACACATTTCTCTGTCTCTA 59.481 41.667 6.37 0.00 38.12 2.43
597 632 3.319405 ACGTGACACATTTCTCTGTCTCT 59.681 43.478 6.37 0.00 38.12 3.10
598 633 3.643763 ACGTGACACATTTCTCTGTCTC 58.356 45.455 6.37 0.00 38.12 3.36
599 634 3.068165 TGACGTGACACATTTCTCTGTCT 59.932 43.478 6.37 0.00 38.12 3.41
600 635 3.381045 TGACGTGACACATTTCTCTGTC 58.619 45.455 6.37 3.03 37.83 3.51
602 637 2.156504 GCTGACGTGACACATTTCTCTG 59.843 50.000 6.37 0.00 0.00 3.35
605 640 1.202639 TGGCTGACGTGACACATTTCT 60.203 47.619 6.37 0.00 0.00 2.52
606 641 1.225855 TGGCTGACGTGACACATTTC 58.774 50.000 6.37 0.00 0.00 2.17
693 730 1.668151 ACACGCGCTTTTCCCTCTC 60.668 57.895 5.73 0.00 0.00 3.20
701 738 2.325082 GGGATCACACACGCGCTTT 61.325 57.895 5.73 0.00 0.00 3.51
852 889 3.496131 CCGTTCCATTCCACCGCG 61.496 66.667 0.00 0.00 0.00 6.46
853 890 0.179067 TATCCGTTCCATTCCACCGC 60.179 55.000 0.00 0.00 0.00 5.68
854 891 2.543777 ATATCCGTTCCATTCCACCG 57.456 50.000 0.00 0.00 0.00 4.94
857 894 4.679639 GCGCTATATATCCGTTCCATTCCA 60.680 45.833 0.00 0.00 0.00 3.53
858 895 3.802685 GCGCTATATATCCGTTCCATTCC 59.197 47.826 0.00 0.00 0.00 3.01
860 897 3.737047 CGGCGCTATATATCCGTTCCATT 60.737 47.826 7.64 0.00 37.33 3.16
862 899 1.133598 CGGCGCTATATATCCGTTCCA 59.866 52.381 7.64 0.00 37.33 3.53
863 900 1.402968 TCGGCGCTATATATCCGTTCC 59.597 52.381 7.64 2.81 42.28 3.62
865 902 3.380637 AGAATCGGCGCTATATATCCGTT 59.619 43.478 7.64 4.96 42.28 4.44
866 903 2.950309 AGAATCGGCGCTATATATCCGT 59.050 45.455 7.64 0.00 42.28 4.69
883 934 1.630126 ATGGAGCAGTGCCCGAGAAT 61.630 55.000 12.58 0.00 0.00 2.40
884 935 2.244117 GATGGAGCAGTGCCCGAGAA 62.244 60.000 12.58 0.00 0.00 2.87
949 1000 4.016706 GGACGAGGTGGTGGGTGG 62.017 72.222 0.00 0.00 0.00 4.61
950 1001 4.373116 CGGACGAGGTGGTGGGTG 62.373 72.222 0.00 0.00 0.00 4.61
951 1002 3.899545 ATCGGACGAGGTGGTGGGT 62.900 63.158 0.00 0.00 0.00 4.51
952 1003 3.075005 ATCGGACGAGGTGGTGGG 61.075 66.667 0.00 0.00 0.00 4.61
953 1004 2.494918 GATCGGACGAGGTGGTGG 59.505 66.667 0.00 0.00 0.00 4.61
954 1005 0.750546 TAGGATCGGACGAGGTGGTG 60.751 60.000 0.00 0.00 0.00 4.17
955 1006 0.750911 GTAGGATCGGACGAGGTGGT 60.751 60.000 0.00 0.00 0.00 4.16
980 1031 5.013704 TCCATTGATTAACTACCACCACAGT 59.986 40.000 0.00 0.00 0.00 3.55
982 1033 5.506730 TCCATTGATTAACTACCACCACA 57.493 39.130 0.00 0.00 0.00 4.17
983 1034 6.177610 TCTTCCATTGATTAACTACCACCAC 58.822 40.000 0.00 0.00 0.00 4.16
984 1035 6.381498 TCTTCCATTGATTAACTACCACCA 57.619 37.500 0.00 0.00 0.00 4.17
986 1037 6.116126 AGCTCTTCCATTGATTAACTACCAC 58.884 40.000 0.00 0.00 0.00 4.16
988 1039 5.463724 CGAGCTCTTCCATTGATTAACTACC 59.536 44.000 12.85 0.00 0.00 3.18
989 1040 6.199342 GTCGAGCTCTTCCATTGATTAACTAC 59.801 42.308 12.85 0.00 0.00 2.73
1208 1269 3.632333 TCCACTGAGTCATCTTCGGTAT 58.368 45.455 0.00 0.00 0.00 2.73
1210 1271 1.821753 CTCCACTGAGTCATCTTCGGT 59.178 52.381 0.00 0.00 33.70 4.69
1211 1272 2.095461 TCTCCACTGAGTCATCTTCGG 58.905 52.381 0.00 0.00 39.75 4.30
1212 1273 3.428725 CCTTCTCCACTGAGTCATCTTCG 60.429 52.174 0.00 0.00 39.75 3.79
1213 1274 3.766591 TCCTTCTCCACTGAGTCATCTTC 59.233 47.826 0.00 0.00 39.75 2.87
1218 1282 1.248486 CGTCCTTCTCCACTGAGTCA 58.752 55.000 0.00 0.00 39.75 3.41
1223 1287 2.125912 CGCCGTCCTTCTCCACTG 60.126 66.667 0.00 0.00 0.00 3.66
1224 1288 3.382832 CCGCCGTCCTTCTCCACT 61.383 66.667 0.00 0.00 0.00 4.00
1425 1492 1.159285 CGACCTGGTACTACGTGTCA 58.841 55.000 0.00 0.00 0.00 3.58
1426 1493 1.129437 GACGACCTGGTACTACGTGTC 59.871 57.143 14.90 4.64 37.32 3.67
1427 1494 1.160137 GACGACCTGGTACTACGTGT 58.840 55.000 14.90 0.00 37.32 4.49
1428 1495 0.449388 GGACGACCTGGTACTACGTG 59.551 60.000 14.90 0.00 37.32 4.49
1429 1496 0.326264 AGGACGACCTGGTACTACGT 59.674 55.000 5.39 10.59 45.92 3.57
1430 1497 3.165606 AGGACGACCTGGTACTACG 57.834 57.895 5.39 1.06 45.92 3.51
1488 1640 3.829886 TGAGCGCACAAGGAAATTTAG 57.170 42.857 11.47 0.00 0.00 1.85
1526 1678 1.944709 GTAGCAACACGTTTTCTGGGT 59.055 47.619 0.00 0.00 0.00 4.51
1544 1705 8.585471 ACAAACTGGTAGTACTATAGCAAGTA 57.415 34.615 5.75 0.00 33.09 2.24
1545 1706 7.477945 ACAAACTGGTAGTACTATAGCAAGT 57.522 36.000 5.75 0.00 33.09 3.16
1546 1707 9.517609 CTAACAAACTGGTAGTACTATAGCAAG 57.482 37.037 5.75 0.00 33.11 4.01
1570 1731 6.220930 GTGCCATTCTCATTAACCGATACTA 58.779 40.000 0.00 0.00 0.00 1.82
1588 1749 0.958822 GGTTCGAAACTTGGTGCCAT 59.041 50.000 5.79 0.00 0.00 4.40
1590 1751 1.534163 GTAGGTTCGAAACTTGGTGCC 59.466 52.381 22.86 4.95 0.00 5.01
1613 1783 3.243068 ACTGATTTTTCACACGGCAAGAC 60.243 43.478 0.00 0.00 0.00 3.01
1630 1800 3.254060 CTTCGTTTGACCGATGACTGAT 58.746 45.455 0.00 0.00 36.62 2.90
1693 1868 4.082841 TGGAATGTAGTAAGAACGTGCGTA 60.083 41.667 0.00 0.00 0.00 4.42
1713 1895 4.009675 GGACTATTGTTGTGCTCATTGGA 58.990 43.478 0.00 0.00 0.00 3.53
1715 1897 3.436704 ACGGACTATTGTTGTGCTCATTG 59.563 43.478 0.00 0.00 0.00 2.82
1719 1901 1.732259 CCACGGACTATTGTTGTGCTC 59.268 52.381 7.69 0.00 34.00 4.26
1751 1966 3.558411 GATGTGCACGCTCGCTCC 61.558 66.667 13.13 0.00 0.00 4.70
1855 2070 2.981909 CTGTGGCTGTGGCTGTGG 60.982 66.667 0.00 0.00 38.73 4.17
1856 2071 3.667282 GCTGTGGCTGTGGCTGTG 61.667 66.667 0.00 0.00 38.73 3.66
1976 2200 0.037232 GAGGTAGGTGTGCTGTGGAC 60.037 60.000 0.00 0.00 0.00 4.02
2071 2295 2.158784 GCTTCTTGGAGCTCCTGATGAT 60.159 50.000 32.28 0.00 39.57 2.45
2072 2296 1.209019 GCTTCTTGGAGCTCCTGATGA 59.791 52.381 32.28 20.56 39.57 2.92
2073 2297 1.666054 GCTTCTTGGAGCTCCTGATG 58.334 55.000 32.28 27.33 39.57 3.07
2111 2335 2.420043 CGGTGGTCGGAGTTGTGT 59.580 61.111 0.00 0.00 34.75 3.72
2300 2533 3.366915 TCGTCGGTGCATCGGACA 61.367 61.111 21.08 0.00 43.55 4.02
2313 2546 0.938168 ACGTTCCTCTTTGCGTCGTC 60.938 55.000 0.00 0.00 31.54 4.20
2408 2641 1.160137 CTTTGAGCGTCCTCCCTTTG 58.840 55.000 0.00 0.00 37.29 2.77
2438 2671 0.389817 CGAGGTTCCTGATGTTGCGA 60.390 55.000 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.