Multiple sequence alignment - TraesCS1D01G353400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G353400 chr1D 100.000 6158 0 0 1 6158 439073411 439067254 0.000000e+00 11372
1 TraesCS1D01G353400 chr1D 86.352 381 37 13 5784 6155 19139397 19139771 9.610000e-108 401
2 TraesCS1D01G353400 chr1D 86.523 371 34 13 5796 6155 49610890 49610525 1.610000e-105 394
3 TraesCS1D01G353400 chr1A 96.038 4089 116 30 1361 5415 535327945 535323869 0.000000e+00 6612
4 TraesCS1D01G353400 chr1A 94.694 490 17 4 833 1315 535328444 535327957 0.000000e+00 752
5 TraesCS1D01G353400 chr1A 92.523 214 7 3 5495 5699 535323791 535323578 1.300000e-76 298
6 TraesCS1D01G353400 chr1B 94.523 4108 141 46 1361 5409 595335262 595331180 0.000000e+00 6263
7 TraesCS1D01G353400 chr1B 91.766 1336 75 16 1 1315 595336595 595335274 0.000000e+00 1825
8 TraesCS1D01G353400 chr1B 85.874 269 20 9 5411 5674 595331131 595330876 2.830000e-68 270
9 TraesCS1D01G353400 chr3D 87.397 365 34 11 5798 6155 182343863 182343504 5.750000e-110 409
10 TraesCS1D01G353400 chr3D 85.752 379 37 13 5791 6157 516389139 516388766 9.680000e-103 385
11 TraesCS1D01G353400 chr7A 86.957 368 33 12 5798 6157 694042834 694043194 3.460000e-107 399
12 TraesCS1D01G353400 chr4D 86.992 369 31 17 5798 6155 49799086 49799448 3.460000e-107 399
13 TraesCS1D01G353400 chr4D 86.777 363 35 6 5796 6155 500549944 500549592 5.790000e-105 392
14 TraesCS1D01G353400 chr6A 86.792 371 31 14 5798 6157 495671093 495671456 1.240000e-106 398
15 TraesCS1D01G353400 chr7D 86.413 368 32 16 5798 6155 1411527 1411168 2.690000e-103 387
16 TraesCS1D01G353400 chr5A 90.000 110 11 0 5050 5159 694530702 694530811 6.430000e-30 143
17 TraesCS1D01G353400 chr5A 90.000 110 11 0 5050 5159 694551133 694551242 6.430000e-30 143
18 TraesCS1D01G353400 chr5A 90.000 110 11 0 5050 5159 694571504 694571613 6.430000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G353400 chr1D 439067254 439073411 6157 True 11372 11372 100.000000 1 6158 1 chr1D.!!$R2 6157
1 TraesCS1D01G353400 chr1A 535323578 535328444 4866 True 2554 6612 94.418333 833 5699 3 chr1A.!!$R1 4866
2 TraesCS1D01G353400 chr1B 595330876 595336595 5719 True 2786 6263 90.721000 1 5674 3 chr1B.!!$R1 5673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 615 0.038744 CTGGCTGACCTCCCAAACAT 59.961 55.000 0.00 0.0 36.63 2.71 F
1285 1311 0.316204 GCCAGCTGCTGTTGTTTCAT 59.684 50.000 26.41 0.0 36.87 2.57 F
2362 2434 0.470766 AACGTAGGCCAGTTTCACCA 59.529 50.000 5.01 0.0 0.00 4.17 F
3422 3503 1.806542 CAGTTTCACACCCTTCATCCG 59.193 52.381 0.00 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1427 1459 3.441222 TCTGCATTAACCACATGAGCTTG 59.559 43.478 0.0 0.0 0.00 4.01 R
2436 2513 5.197682 AGCATGGACGATTAGGTACTTAC 57.802 43.478 0.0 0.0 41.75 2.34 R
3519 3600 3.007635 GTCCTTAAAATGTCCCCACGAG 58.992 50.000 0.0 0.0 0.00 4.18 R
5413 5518 1.067974 TCGAGACAAAAACGAGCCAGA 59.932 47.619 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.370445 CCCCTTCTGCTCCCGATGT 61.370 63.158 0.00 0.00 0.00 3.06
54 55 0.536724 CCGATGTGGTGTCAGATCCA 59.463 55.000 0.00 0.00 39.64 3.41
147 148 2.490217 CTGTGTAGGCTCGACGGG 59.510 66.667 0.00 0.00 0.00 5.28
188 189 3.766591 AGGTCTACACCACTCTTGATCTG 59.233 47.826 0.00 0.00 46.68 2.90
193 194 4.170468 ACACCACTCTTGATCTGGTTTT 57.830 40.909 0.94 0.00 36.06 2.43
224 225 0.831711 GTTGTGGTCTTTGGGGCCAT 60.832 55.000 4.39 0.00 34.52 4.40
341 342 2.978452 CTTCTATCGGCACTGCGGGG 62.978 65.000 8.58 0.00 0.00 5.73
361 362 1.137086 GCGCTCTGATTTGGTCTCCTA 59.863 52.381 0.00 0.00 0.00 2.94
377 378 1.614711 CTATGGGCATGTGTGGGGT 59.385 57.895 0.00 0.00 0.00 4.95
401 402 0.038892 CAGTGCACCTGATGTTTGGC 60.039 55.000 14.63 0.00 44.49 4.52
403 404 1.073763 AGTGCACCTGATGTTTGGCTA 59.926 47.619 14.63 0.00 0.00 3.93
404 405 1.200020 GTGCACCTGATGTTTGGCTAC 59.800 52.381 5.22 0.00 0.00 3.58
418 419 2.897207 CTACGCCCGGAACCATGA 59.103 61.111 0.73 0.00 0.00 3.07
436 437 3.726557 TGATGGTTCTTGGCTGAATCT 57.273 42.857 5.87 0.00 0.00 2.40
447 448 2.025037 TGGCTGAATCTGTTGCCCTAAT 60.025 45.455 0.00 0.00 44.32 1.73
460 461 1.134788 GCCCTAATACGTGCACTCAGT 60.135 52.381 16.19 8.21 0.00 3.41
508 509 1.817941 CCTCCAACGGGCCATAACG 60.818 63.158 4.39 0.10 0.00 3.18
517 518 1.411041 GGGCCATAACGACTAGGAGT 58.589 55.000 4.39 0.00 0.00 3.85
531 532 5.447548 CGACTAGGAGTAGCTTACTTGTCAC 60.448 48.000 11.29 0.00 39.59 3.67
594 596 2.629656 GGTGACCAGCATGTGTGGC 61.630 63.158 14.32 9.01 38.83 5.01
602 604 2.986306 GCATGTGTGGCTGGCTGAC 61.986 63.158 2.00 0.00 0.00 3.51
613 615 0.038744 CTGGCTGACCTCCCAAACAT 59.961 55.000 0.00 0.00 36.63 2.71
620 622 3.492337 TGACCTCCCAAACATTGTAACC 58.508 45.455 0.00 0.00 0.00 2.85
622 624 1.816224 CCTCCCAAACATTGTAACCGG 59.184 52.381 0.00 0.00 0.00 5.28
623 625 2.510613 CTCCCAAACATTGTAACCGGT 58.489 47.619 0.00 0.00 0.00 5.28
703 705 3.979911 TGATATGCAAAAGGTGTCCCAT 58.020 40.909 0.00 0.00 0.00 4.00
810 812 1.202290 CGGGCCATCTTTTTCCATTCG 60.202 52.381 4.39 0.00 0.00 3.34
814 816 2.736400 GCCATCTTTTTCCATTCGGCTG 60.736 50.000 0.00 0.00 35.39 4.85
852 854 1.545582 CGCCCATCTCACCAACAAATT 59.454 47.619 0.00 0.00 0.00 1.82
874 876 4.883354 CCAGCCCGGAGCCCATTC 62.883 72.222 0.73 0.00 45.47 2.67
927 943 4.770874 ATTTCACCCGACGGCCCG 62.771 66.667 8.86 0.00 0.00 6.13
1173 1199 1.737793 CGGTTCTAATTTTCGCTGCCT 59.262 47.619 0.00 0.00 0.00 4.75
1232 1258 2.203877 TACTCACGGTGGCCCCTT 60.204 61.111 8.50 0.00 0.00 3.95
1251 1277 1.320344 TGCTCCTCGTGCTCGGTTAT 61.320 55.000 8.49 0.00 37.69 1.89
1268 1294 4.490799 CGGTTATTTTCGTACTACGTTGCC 60.491 45.833 8.42 2.93 43.14 4.52
1285 1311 0.316204 GCCAGCTGCTGTTGTTTCAT 59.684 50.000 26.41 0.00 36.87 2.57
1309 1341 1.751924 ACTATCACTGCTTCCGGTCTC 59.248 52.381 0.00 0.00 0.00 3.36
1310 1342 0.738975 TATCACTGCTTCCGGTCTCG 59.261 55.000 0.00 0.00 0.00 4.04
1322 1354 2.205307 CGGTCTCGGATTAGTGTTCC 57.795 55.000 0.00 0.00 0.00 3.62
1323 1355 1.749634 CGGTCTCGGATTAGTGTTCCT 59.250 52.381 0.00 0.00 0.00 3.36
1324 1356 2.947652 CGGTCTCGGATTAGTGTTCCTA 59.052 50.000 0.00 0.00 0.00 2.94
1325 1357 3.568853 CGGTCTCGGATTAGTGTTCCTAT 59.431 47.826 0.00 0.00 0.00 2.57
1326 1358 4.556898 CGGTCTCGGATTAGTGTTCCTATG 60.557 50.000 0.00 0.00 0.00 2.23
1327 1359 4.262079 GGTCTCGGATTAGTGTTCCTATGG 60.262 50.000 0.00 0.00 0.00 2.74
1328 1360 4.341520 GTCTCGGATTAGTGTTCCTATGGT 59.658 45.833 0.00 0.00 0.00 3.55
1329 1361 4.960469 TCTCGGATTAGTGTTCCTATGGTT 59.040 41.667 0.00 0.00 0.00 3.67
1330 1362 5.424252 TCTCGGATTAGTGTTCCTATGGTTT 59.576 40.000 0.00 0.00 0.00 3.27
1331 1363 6.608405 TCTCGGATTAGTGTTCCTATGGTTTA 59.392 38.462 0.00 0.00 0.00 2.01
1332 1364 6.576185 TCGGATTAGTGTTCCTATGGTTTAC 58.424 40.000 0.00 0.00 0.00 2.01
1333 1365 5.756833 CGGATTAGTGTTCCTATGGTTTACC 59.243 44.000 0.00 0.00 0.00 2.85
1334 1366 6.060136 GGATTAGTGTTCCTATGGTTTACCC 58.940 44.000 0.00 0.00 34.29 3.69
1335 1367 6.126565 GGATTAGTGTTCCTATGGTTTACCCT 60.127 42.308 0.00 0.00 34.29 4.34
1336 1368 4.838904 AGTGTTCCTATGGTTTACCCTC 57.161 45.455 0.00 0.00 34.29 4.30
1337 1369 4.172807 AGTGTTCCTATGGTTTACCCTCA 58.827 43.478 0.00 0.00 34.29 3.86
1338 1370 4.225267 AGTGTTCCTATGGTTTACCCTCAG 59.775 45.833 0.00 0.00 34.29 3.35
1339 1371 3.054655 TGTTCCTATGGTTTACCCTCAGC 60.055 47.826 0.00 0.00 34.29 4.26
1340 1372 3.130734 TCCTATGGTTTACCCTCAGCT 57.869 47.619 0.00 0.00 34.29 4.24
1341 1373 2.771943 TCCTATGGTTTACCCTCAGCTG 59.228 50.000 7.63 7.63 34.29 4.24
1342 1374 2.505819 CCTATGGTTTACCCTCAGCTGT 59.494 50.000 14.67 0.00 34.29 4.40
1343 1375 2.789409 ATGGTTTACCCTCAGCTGTC 57.211 50.000 14.67 0.00 34.29 3.51
1344 1376 1.429930 TGGTTTACCCTCAGCTGTCA 58.570 50.000 14.67 0.00 34.29 3.58
1345 1377 1.771854 TGGTTTACCCTCAGCTGTCAA 59.228 47.619 14.67 0.00 34.29 3.18
1346 1378 2.375174 TGGTTTACCCTCAGCTGTCAAT 59.625 45.455 14.67 1.05 34.29 2.57
1347 1379 3.010420 GGTTTACCCTCAGCTGTCAATC 58.990 50.000 14.67 1.73 0.00 2.67
1348 1380 3.559171 GGTTTACCCTCAGCTGTCAATCA 60.559 47.826 14.67 0.00 0.00 2.57
1349 1381 3.616956 TTACCCTCAGCTGTCAATCAG 57.383 47.619 14.67 1.93 46.12 2.90
1373 1405 7.961827 CAGCTTTAGATTCTTCTTGCTTACTTG 59.038 37.037 0.00 0.00 32.95 3.16
1374 1406 7.880195 AGCTTTAGATTCTTCTTGCTTACTTGA 59.120 33.333 0.00 0.00 31.99 3.02
1375 1407 8.507249 GCTTTAGATTCTTCTTGCTTACTTGAA 58.493 33.333 0.00 0.00 33.17 2.69
1406 1438 4.783242 CCGTAGAGGTTTCATTTGTTGTG 58.217 43.478 0.00 0.00 34.51 3.33
1427 1459 1.639298 GCTGATTGCACGAGGTGGAC 61.639 60.000 0.00 0.00 42.31 4.02
1469 1501 4.022589 CAGAGTTCGTGTAGGGTTCAACTA 60.023 45.833 0.00 0.00 0.00 2.24
1607 1639 7.328493 GGGTGTATGTGAGTTCAAAATTTAAGC 59.672 37.037 0.00 0.00 0.00 3.09
1609 1641 7.589954 GTGTATGTGAGTTCAAAATTTAAGCGT 59.410 33.333 0.00 0.00 0.00 5.07
1618 1650 6.801539 TCAAAATTTAAGCGTCTCACTGAT 57.198 33.333 0.00 0.00 0.00 2.90
1619 1651 6.602179 TCAAAATTTAAGCGTCTCACTGATG 58.398 36.000 0.00 0.00 34.89 3.07
1620 1652 6.426633 TCAAAATTTAAGCGTCTCACTGATGA 59.573 34.615 0.00 0.00 33.63 2.92
1624 1656 3.325293 AAGCGTCTCACTGATGATGTT 57.675 42.857 0.00 0.00 33.22 2.71
1625 1657 3.325293 AGCGTCTCACTGATGATGTTT 57.675 42.857 0.00 0.00 33.22 2.83
1651 1707 2.799126 TGGGTATCCGTTTGATGCTT 57.201 45.000 0.00 0.00 36.43 3.91
1851 1916 1.354031 TCCCAGCTTGCCAATCAACTA 59.646 47.619 0.00 0.00 0.00 2.24
1927 1992 4.342352 GCATGGTGCTAAAACAGTAGTC 57.658 45.455 0.00 0.00 40.96 2.59
2166 2238 7.972277 CAGTTATCAGTGCTGCTATTGATTTTT 59.028 33.333 15.39 3.97 32.83 1.94
2193 2265 7.963532 TGTGGAACTAGATATCTATGTTTCCC 58.036 38.462 26.62 21.31 38.04 3.97
2362 2434 0.470766 AACGTAGGCCAGTTTCACCA 59.529 50.000 5.01 0.00 0.00 4.17
2368 2440 3.737559 AGGCCAGTTTCACCATTGATA 57.262 42.857 5.01 0.00 0.00 2.15
2425 2502 5.922960 ACACCCCAGCTTATTTATCCATA 57.077 39.130 0.00 0.00 0.00 2.74
2436 2513 7.716998 AGCTTATTTATCCATACAGACCTGTTG 59.283 37.037 8.06 6.66 41.83 3.33
2580 2659 8.723942 TTTCCATGTTCTAGCTCTTATCTTTC 57.276 34.615 0.00 0.00 0.00 2.62
2868 2948 5.070313 ACAAACTTAGTGTTTCCATGGCAAT 59.930 36.000 6.96 0.99 46.11 3.56
2965 3045 2.481568 ACATCACTGATGCAGAACAACG 59.518 45.455 17.50 0.00 43.15 4.10
3422 3503 1.806542 CAGTTTCACACCCTTCATCCG 59.193 52.381 0.00 0.00 0.00 4.18
3519 3600 4.631813 CCAAGTGGAGCTCTATTGTTGTAC 59.368 45.833 14.64 0.00 37.39 2.90
3738 3819 9.713713 GAAGACACTCCTTATTTTCTCTAGTTT 57.286 33.333 0.00 0.00 0.00 2.66
4012 4094 3.055240 AGGCCTGAGAAGAATCTTCACAG 60.055 47.826 30.49 30.49 35.54 3.66
4028 4110 4.991153 TCACAGGTGATAAGCAGAGTAG 57.009 45.455 0.00 0.00 34.14 2.57
4239 4321 3.131709 TCTGCCTTCTTTTCCTCTGTG 57.868 47.619 0.00 0.00 0.00 3.66
4372 4454 2.288886 ACCTACTTCTGTCGCCTGTTTC 60.289 50.000 0.00 0.00 0.00 2.78
4373 4455 1.986378 CTACTTCTGTCGCCTGTTTCG 59.014 52.381 0.00 0.00 0.00 3.46
4374 4456 0.104304 ACTTCTGTCGCCTGTTTCGT 59.896 50.000 0.00 0.00 0.00 3.85
4378 4460 1.068748 TCTGTCGCCTGTTTCGTAGTC 60.069 52.381 0.00 0.00 0.00 2.59
4528 4613 4.449743 CACTCCGTCATTTCTCGGTAAAAA 59.550 41.667 3.64 0.00 45.88 1.94
4547 4632 6.670695 AAAAATTACTCCAAGAAGTGCCAT 57.329 33.333 0.00 0.00 0.00 4.40
4557 4642 2.508526 AGAAGTGCCATGTTCTCAACC 58.491 47.619 0.00 0.00 0.00 3.77
4559 4644 2.592102 AGTGCCATGTTCTCAACCAT 57.408 45.000 0.00 0.00 0.00 3.55
4563 4648 4.400251 AGTGCCATGTTCTCAACCATTATG 59.600 41.667 0.00 0.00 0.00 1.90
4569 4654 6.823182 CCATGTTCTCAACCATTATGTCTGTA 59.177 38.462 0.00 0.00 0.00 2.74
4676 4761 1.346722 CCTTCCCCGGTATCCATGTAC 59.653 57.143 0.00 0.00 0.00 2.90
5077 5165 2.430080 CTTGCTTGTGCCGTCGTGTC 62.430 60.000 0.00 0.00 38.71 3.67
5103 5191 2.029470 AGTGTCGAGGAGCAAGAAGAAG 60.029 50.000 0.00 0.00 0.00 2.85
5117 5205 0.188342 AAGAAGGGCAAGGGCAAGAA 59.812 50.000 0.00 0.00 43.71 2.52
5198 5286 2.115291 GGCCGCCCTTGAGATGTTC 61.115 63.158 0.00 0.00 0.00 3.18
5210 5300 3.743521 TGAGATGTTCACTTGTCAAGGG 58.256 45.455 16.85 13.07 0.00 3.95
5211 5301 3.136443 TGAGATGTTCACTTGTCAAGGGT 59.864 43.478 14.50 0.00 32.37 4.34
5280 5373 9.101655 GTTTTAGTTTATTTATAGGCGTGAGGA 57.898 33.333 0.00 0.00 0.00 3.71
5411 5516 8.677300 GCCTTGTTCTCTGAATGTTTTATCATA 58.323 33.333 0.00 0.00 0.00 2.15
5418 5523 9.060347 TCTCTGAATGTTTTATCATATTCTGGC 57.940 33.333 0.00 0.00 32.64 4.85
5420 5525 9.060347 TCTGAATGTTTTATCATATTCTGGCTC 57.940 33.333 0.00 0.00 32.64 4.70
5421 5526 7.864686 TGAATGTTTTATCATATTCTGGCTCG 58.135 34.615 0.00 0.00 32.28 5.03
5422 5527 7.498900 TGAATGTTTTATCATATTCTGGCTCGT 59.501 33.333 0.00 0.00 32.28 4.18
5433 5584 1.067974 TCTGGCTCGTTTTTGTCTCGA 59.932 47.619 0.00 0.00 0.00 4.04
5438 5589 3.772522 CTCGTTTTTGTCTCGAGTTCC 57.227 47.619 13.13 2.51 43.69 3.62
5454 5606 0.181587 TTCCCAGGCAAGAACGAACA 59.818 50.000 0.00 0.00 0.00 3.18
5455 5607 0.400213 TCCCAGGCAAGAACGAACAT 59.600 50.000 0.00 0.00 0.00 2.71
5664 5827 0.173935 ACCAACGAACAGTGACGACA 59.826 50.000 17.59 0.00 0.00 4.35
5699 5862 4.858680 TGTGGGTGCAACGGCGAA 62.859 61.111 16.62 0.00 45.35 4.70
5700 5863 3.587933 GTGGGTGCAACGGCGAAA 61.588 61.111 16.62 0.00 45.35 3.46
5701 5864 2.596046 TGGGTGCAACGGCGAAAT 60.596 55.556 16.62 0.00 45.35 2.17
5702 5865 2.196925 TGGGTGCAACGGCGAAATT 61.197 52.632 16.62 0.00 45.35 1.82
5703 5866 1.006688 GGGTGCAACGGCGAAATTT 60.007 52.632 16.62 0.00 45.35 1.82
5704 5867 1.281566 GGGTGCAACGGCGAAATTTG 61.282 55.000 16.62 8.96 45.35 2.32
5705 5868 1.281566 GGTGCAACGGCGAAATTTGG 61.282 55.000 16.62 0.00 45.35 3.28
5706 5869 1.663074 TGCAACGGCGAAATTTGGC 60.663 52.632 16.62 16.03 45.35 4.52
5722 5885 2.725641 GCGTTTCGGCCCTTTTGT 59.274 55.556 0.00 0.00 0.00 2.83
5723 5886 1.371267 GCGTTTCGGCCCTTTTGTC 60.371 57.895 0.00 0.00 0.00 3.18
5724 5887 2.026522 CGTTTCGGCCCTTTTGTCA 58.973 52.632 0.00 0.00 0.00 3.58
5725 5888 0.382515 CGTTTCGGCCCTTTTGTCAA 59.617 50.000 0.00 0.00 0.00 3.18
5726 5889 1.202313 CGTTTCGGCCCTTTTGTCAAA 60.202 47.619 0.00 0.00 0.00 2.69
5727 5890 2.198406 GTTTCGGCCCTTTTGTCAAAC 58.802 47.619 0.00 0.00 0.00 2.93
5728 5891 1.770294 TTCGGCCCTTTTGTCAAACT 58.230 45.000 0.00 0.00 0.00 2.66
5729 5892 1.770294 TCGGCCCTTTTGTCAAACTT 58.230 45.000 0.00 0.00 0.00 2.66
5730 5893 2.104170 TCGGCCCTTTTGTCAAACTTT 58.896 42.857 0.00 0.00 0.00 2.66
5731 5894 3.288964 TCGGCCCTTTTGTCAAACTTTA 58.711 40.909 0.00 0.00 0.00 1.85
5732 5895 3.316868 TCGGCCCTTTTGTCAAACTTTAG 59.683 43.478 0.00 0.00 0.00 1.85
5733 5896 3.390135 GGCCCTTTTGTCAAACTTTAGC 58.610 45.455 0.00 0.00 0.00 3.09
5734 5897 3.049912 GCCCTTTTGTCAAACTTTAGCG 58.950 45.455 0.00 0.00 0.00 4.26
5735 5898 3.638484 CCCTTTTGTCAAACTTTAGCGG 58.362 45.455 0.00 0.00 0.00 5.52
5736 5899 3.552068 CCCTTTTGTCAAACTTTAGCGGG 60.552 47.826 0.00 0.00 0.00 6.13
5737 5900 3.316868 CCTTTTGTCAAACTTTAGCGGGA 59.683 43.478 0.00 0.00 0.00 5.14
5738 5901 4.022329 CCTTTTGTCAAACTTTAGCGGGAT 60.022 41.667 0.00 0.00 0.00 3.85
5739 5902 4.759516 TTTGTCAAACTTTAGCGGGATC 57.240 40.909 0.00 0.00 0.00 3.36
5740 5903 3.695830 TGTCAAACTTTAGCGGGATCT 57.304 42.857 0.00 0.00 0.00 2.75
5741 5904 4.811969 TGTCAAACTTTAGCGGGATCTA 57.188 40.909 0.00 0.00 0.00 1.98
5742 5905 5.155278 TGTCAAACTTTAGCGGGATCTAA 57.845 39.130 0.00 0.00 0.00 2.10
5743 5906 5.175859 TGTCAAACTTTAGCGGGATCTAAG 58.824 41.667 0.00 0.00 31.01 2.18
5744 5907 5.046878 TGTCAAACTTTAGCGGGATCTAAGA 60.047 40.000 0.00 0.00 31.01 2.10
5745 5908 5.520649 GTCAAACTTTAGCGGGATCTAAGAG 59.479 44.000 0.00 0.00 31.01 2.85
5746 5909 3.737032 ACTTTAGCGGGATCTAAGAGC 57.263 47.619 0.00 0.00 31.01 4.09
5747 5910 3.031736 ACTTTAGCGGGATCTAAGAGCA 58.968 45.455 0.00 0.00 31.01 4.26
5748 5911 3.451178 ACTTTAGCGGGATCTAAGAGCAA 59.549 43.478 0.00 0.00 31.01 3.91
5749 5912 3.454371 TTAGCGGGATCTAAGAGCAAC 57.546 47.619 0.00 0.00 0.00 4.17
5750 5913 1.490574 AGCGGGATCTAAGAGCAACT 58.509 50.000 0.00 0.00 0.00 3.16
5751 5914 1.410882 AGCGGGATCTAAGAGCAACTC 59.589 52.381 0.00 0.00 0.00 3.01
5752 5915 1.539280 GCGGGATCTAAGAGCAACTCC 60.539 57.143 0.00 0.00 0.00 3.85
5753 5916 1.757118 CGGGATCTAAGAGCAACTCCA 59.243 52.381 0.00 0.00 0.00 3.86
5754 5917 2.168521 CGGGATCTAAGAGCAACTCCAA 59.831 50.000 0.00 0.00 0.00 3.53
5755 5918 3.536570 GGGATCTAAGAGCAACTCCAAC 58.463 50.000 0.00 0.00 0.00 3.77
5756 5919 3.190874 GGATCTAAGAGCAACTCCAACG 58.809 50.000 0.00 0.00 0.00 4.10
5757 5920 2.743636 TCTAAGAGCAACTCCAACGG 57.256 50.000 0.00 0.00 0.00 4.44
5758 5921 1.275291 TCTAAGAGCAACTCCAACGGG 59.725 52.381 0.00 0.00 0.00 5.28
5759 5922 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
5760 5923 2.032681 GAGCAACTCCAACGGGCT 59.967 61.111 0.00 0.00 37.56 5.19
5761 5924 2.032681 AGCAACTCCAACGGGCTC 59.967 61.111 0.00 0.00 0.00 4.70
5762 5925 2.281484 GCAACTCCAACGGGCTCA 60.281 61.111 0.00 0.00 0.00 4.26
5763 5926 2.617274 GCAACTCCAACGGGCTCAC 61.617 63.158 0.00 0.00 0.00 3.51
5764 5927 1.966451 CAACTCCAACGGGCTCACC 60.966 63.158 0.00 0.00 0.00 4.02
5765 5928 2.147387 AACTCCAACGGGCTCACCT 61.147 57.895 0.00 0.00 36.97 4.00
5766 5929 0.834687 AACTCCAACGGGCTCACCTA 60.835 55.000 0.00 0.00 36.97 3.08
5767 5930 0.834687 ACTCCAACGGGCTCACCTAA 60.835 55.000 0.00 0.00 36.97 2.69
5768 5931 0.323629 CTCCAACGGGCTCACCTAAA 59.676 55.000 0.00 0.00 36.97 1.85
5769 5932 0.988832 TCCAACGGGCTCACCTAAAT 59.011 50.000 0.00 0.00 36.97 1.40
5770 5933 1.094785 CCAACGGGCTCACCTAAATG 58.905 55.000 0.00 0.00 36.97 2.32
5771 5934 0.451783 CAACGGGCTCACCTAAATGC 59.548 55.000 0.00 0.00 36.97 3.56
5772 5935 0.037590 AACGGGCTCACCTAAATGCA 59.962 50.000 0.00 0.00 36.97 3.96
5773 5936 0.255890 ACGGGCTCACCTAAATGCAT 59.744 50.000 0.00 0.00 36.97 3.96
5774 5937 0.664761 CGGGCTCACCTAAATGCATG 59.335 55.000 0.00 0.00 36.97 4.06
5775 5938 1.035139 GGGCTCACCTAAATGCATGG 58.965 55.000 0.00 0.00 35.85 3.66
5776 5939 0.386838 GGCTCACCTAAATGCATGGC 59.613 55.000 0.00 0.00 0.00 4.40
5777 5940 0.029834 GCTCACCTAAATGCATGGCG 59.970 55.000 0.00 0.00 0.00 5.69
5778 5941 0.029834 CTCACCTAAATGCATGGCGC 59.970 55.000 0.00 0.00 42.89 6.53
5787 5950 2.580326 GCATGGCGCATTTGTCCG 60.580 61.111 10.83 0.00 41.79 4.79
5792 5955 4.243383 GCGCATTTGTCCGCTTTT 57.757 50.000 0.30 0.00 46.14 2.27
5793 5956 2.516486 GCGCATTTGTCCGCTTTTT 58.484 47.368 0.30 0.00 46.14 1.94
5812 5975 5.403897 TTTTTGAGAGCAACTAGTTGTCG 57.596 39.130 30.90 11.61 42.31 4.35
5813 5976 4.316205 TTTGAGAGCAACTAGTTGTCGA 57.684 40.909 30.90 19.85 42.31 4.20
5814 5977 3.560902 TGAGAGCAACTAGTTGTCGAG 57.439 47.619 30.90 10.92 42.31 4.04
5815 5978 2.255316 GAGAGCAACTAGTTGTCGAGC 58.745 52.381 30.90 19.28 42.31 5.03
5816 5979 1.613925 AGAGCAACTAGTTGTCGAGCA 59.386 47.619 30.90 0.00 42.31 4.26
5817 5980 1.721926 GAGCAACTAGTTGTCGAGCAC 59.278 52.381 30.90 15.91 42.31 4.40
5818 5981 1.341531 AGCAACTAGTTGTCGAGCACT 59.658 47.619 30.90 17.65 42.31 4.40
5819 5982 2.135933 GCAACTAGTTGTCGAGCACTT 58.864 47.619 30.90 0.00 42.31 3.16
5820 5983 2.155924 GCAACTAGTTGTCGAGCACTTC 59.844 50.000 30.90 11.14 42.31 3.01
5821 5984 3.643763 CAACTAGTTGTCGAGCACTTCT 58.356 45.455 24.70 0.00 35.92 2.85
5822 5985 3.290308 ACTAGTTGTCGAGCACTTCTG 57.710 47.619 1.85 0.00 0.00 3.02
5823 5986 2.885266 ACTAGTTGTCGAGCACTTCTGA 59.115 45.455 1.85 0.00 0.00 3.27
5824 5987 2.430546 AGTTGTCGAGCACTTCTGAG 57.569 50.000 0.00 0.00 0.00 3.35
5825 5988 1.957177 AGTTGTCGAGCACTTCTGAGA 59.043 47.619 0.00 0.00 0.00 3.27
5826 5989 2.030363 AGTTGTCGAGCACTTCTGAGAG 60.030 50.000 0.00 0.00 0.00 3.20
5827 5990 0.242286 TGTCGAGCACTTCTGAGAGC 59.758 55.000 0.00 0.00 39.45 4.09
5828 5991 0.457681 GTCGAGCACTTCTGAGAGCC 60.458 60.000 0.00 0.00 39.93 4.70
5829 5992 0.610509 TCGAGCACTTCTGAGAGCCT 60.611 55.000 0.00 0.00 39.93 4.58
5830 5993 0.179140 CGAGCACTTCTGAGAGCCTC 60.179 60.000 0.00 0.00 39.93 4.70
5831 5994 0.179140 GAGCACTTCTGAGAGCCTCG 60.179 60.000 0.00 0.00 39.93 4.63
5832 5995 1.809209 GCACTTCTGAGAGCCTCGC 60.809 63.158 0.00 0.00 33.94 5.03
5833 5996 1.588597 CACTTCTGAGAGCCTCGCA 59.411 57.895 0.00 0.00 32.35 5.10
5834 5997 0.458197 CACTTCTGAGAGCCTCGCAG 60.458 60.000 18.18 18.18 44.17 5.18
5835 5998 1.519013 CTTCTGAGAGCCTCGCAGC 60.519 63.158 19.27 0.00 42.82 5.25
5836 5999 3.348055 TTCTGAGAGCCTCGCAGCG 62.348 63.158 19.27 9.06 42.82 5.18
5837 6000 3.819920 CTGAGAGCCTCGCAGCGA 61.820 66.667 18.39 18.39 37.48 4.93
5838 6001 3.136345 CTGAGAGCCTCGCAGCGAT 62.136 63.158 19.91 2.85 37.48 4.58
5839 6002 2.354539 GAGAGCCTCGCAGCGATC 60.355 66.667 19.91 13.50 38.01 3.69
5840 6003 3.131196 GAGAGCCTCGCAGCGATCA 62.131 63.158 19.91 0.00 38.01 2.92
5841 6004 2.657944 GAGCCTCGCAGCGATCAG 60.658 66.667 19.91 11.48 38.01 2.90
5852 6015 3.084579 CGATCAGCGCCACTTGAC 58.915 61.111 2.29 0.00 0.00 3.18
5853 6016 2.792290 CGATCAGCGCCACTTGACG 61.792 63.158 2.29 4.51 0.00 4.35
5860 6023 3.482783 GCCACTTGACGCGCTCTC 61.483 66.667 5.73 0.00 0.00 3.20
5861 6024 2.049156 CCACTTGACGCGCTCTCA 60.049 61.111 5.73 0.00 0.00 3.27
5862 6025 2.091112 CCACTTGACGCGCTCTCAG 61.091 63.158 5.73 6.49 0.00 3.35
5863 6026 2.431601 ACTTGACGCGCTCTCAGC 60.432 61.111 5.73 0.00 38.02 4.26
5864 6027 3.184683 CTTGACGCGCTCTCAGCC 61.185 66.667 5.73 0.00 38.18 4.85
5865 6028 3.921767 CTTGACGCGCTCTCAGCCA 62.922 63.158 5.73 0.00 38.18 4.75
5866 6029 3.300934 TTGACGCGCTCTCAGCCAT 62.301 57.895 5.73 0.00 38.18 4.40
5867 6030 2.510238 GACGCGCTCTCAGCCATT 60.510 61.111 5.73 0.00 38.18 3.16
5868 6031 2.510238 ACGCGCTCTCAGCCATTC 60.510 61.111 5.73 0.00 38.18 2.67
5869 6032 3.624300 CGCGCTCTCAGCCATTCG 61.624 66.667 5.56 0.00 38.18 3.34
5870 6033 2.510238 GCGCTCTCAGCCATTCGT 60.510 61.111 0.00 0.00 38.18 3.85
5871 6034 2.520904 GCGCTCTCAGCCATTCGTC 61.521 63.158 0.00 0.00 38.18 4.20
5872 6035 1.153765 CGCTCTCAGCCATTCGTCA 60.154 57.895 0.00 0.00 38.18 4.35
5873 6036 1.416813 CGCTCTCAGCCATTCGTCAC 61.417 60.000 0.00 0.00 38.18 3.67
5874 6037 1.416813 GCTCTCAGCCATTCGTCACG 61.417 60.000 0.00 0.00 34.48 4.35
5875 6038 0.109086 CTCTCAGCCATTCGTCACGT 60.109 55.000 0.00 0.00 0.00 4.49
5876 6039 0.388520 TCTCAGCCATTCGTCACGTG 60.389 55.000 9.94 9.94 0.00 4.49
5877 6040 0.667487 CTCAGCCATTCGTCACGTGT 60.667 55.000 16.51 0.00 0.00 4.49
5878 6041 0.666274 TCAGCCATTCGTCACGTGTC 60.666 55.000 16.51 9.31 0.00 3.67
5879 6042 1.733041 AGCCATTCGTCACGTGTCG 60.733 57.895 25.70 25.70 0.00 4.35
5880 6043 2.769617 CCATTCGTCACGTGTCGC 59.230 61.111 26.58 12.64 0.00 5.19
5882 6045 3.467119 ATTCGTCACGTGTCGCGC 61.467 61.111 26.58 0.00 46.11 6.86
5883 6046 3.891586 ATTCGTCACGTGTCGCGCT 62.892 57.895 26.58 12.73 46.11 5.92
5886 6049 3.461982 GTCACGTGTCGCGCTCTG 61.462 66.667 16.51 0.00 46.11 3.35
5887 6050 4.700365 TCACGTGTCGCGCTCTGG 62.700 66.667 16.51 0.00 46.11 3.86
5888 6051 4.700365 CACGTGTCGCGCTCTGGA 62.700 66.667 7.58 0.00 46.11 3.86
5889 6052 3.973516 ACGTGTCGCGCTCTGGAA 61.974 61.111 5.56 0.00 46.11 3.53
5890 6053 3.175240 CGTGTCGCGCTCTGGAAG 61.175 66.667 5.56 0.00 0.00 3.46
5900 6063 1.519719 CTCTGGAAGCTCCCTTCGG 59.480 63.158 0.00 0.00 46.76 4.30
5901 6064 0.972983 CTCTGGAAGCTCCCTTCGGA 60.973 60.000 0.00 0.00 46.76 4.55
5902 6065 0.325671 TCTGGAAGCTCCCTTCGGAT 60.326 55.000 0.00 0.00 46.76 4.18
5903 6066 0.543749 CTGGAAGCTCCCTTCGGATT 59.456 55.000 0.00 0.00 46.76 3.01
5904 6067 0.991920 TGGAAGCTCCCTTCGGATTT 59.008 50.000 0.00 0.00 46.76 2.17
5905 6068 1.354368 TGGAAGCTCCCTTCGGATTTT 59.646 47.619 0.00 0.00 46.76 1.82
5906 6069 1.745653 GGAAGCTCCCTTCGGATTTTG 59.254 52.381 0.00 0.00 46.76 2.44
5907 6070 2.437413 GAAGCTCCCTTCGGATTTTGT 58.563 47.619 0.00 0.00 38.24 2.83
5908 6071 2.586648 AGCTCCCTTCGGATTTTGTT 57.413 45.000 0.00 0.00 37.60 2.83
5909 6072 2.876581 AGCTCCCTTCGGATTTTGTTT 58.123 42.857 0.00 0.00 37.60 2.83
5910 6073 3.230976 AGCTCCCTTCGGATTTTGTTTT 58.769 40.909 0.00 0.00 37.60 2.43
5911 6074 3.641436 AGCTCCCTTCGGATTTTGTTTTT 59.359 39.130 0.00 0.00 37.60 1.94
5929 6092 4.600934 TTTTTCTTATTTTTCGCACGCG 57.399 36.364 3.53 3.53 41.35 6.01
5930 6093 2.953640 TTCTTATTTTTCGCACGCGT 57.046 40.000 5.58 5.58 40.74 6.01
5931 6094 2.953640 TCTTATTTTTCGCACGCGTT 57.046 40.000 10.22 0.00 40.74 4.84
5932 6095 3.256285 TCTTATTTTTCGCACGCGTTT 57.744 38.095 10.22 0.00 40.74 3.60
5933 6096 3.619729 TCTTATTTTTCGCACGCGTTTT 58.380 36.364 10.22 0.00 40.74 2.43
5934 6097 3.660356 TCTTATTTTTCGCACGCGTTTTC 59.340 39.130 10.22 0.04 40.74 2.29
5936 6099 1.194896 TTTTTCGCACGCGTTTTCGG 61.195 50.000 10.22 0.00 44.29 4.30
5937 6100 4.653252 TTCGCACGCGTTTTCGGC 62.653 61.111 10.22 9.05 44.29 5.54
5939 6102 4.659874 CGCACGCGTTTTCGGCTT 62.660 61.111 10.22 0.00 44.29 4.35
5940 6103 2.353030 GCACGCGTTTTCGGCTTT 60.353 55.556 10.22 0.00 44.29 3.51
5941 6104 1.942223 GCACGCGTTTTCGGCTTTT 60.942 52.632 10.22 0.00 44.29 2.27
5942 6105 1.476235 GCACGCGTTTTCGGCTTTTT 61.476 50.000 10.22 0.00 44.29 1.94
5943 6106 1.744374 CACGCGTTTTCGGCTTTTTA 58.256 45.000 10.22 0.00 44.29 1.52
5944 6107 2.110226 CACGCGTTTTCGGCTTTTTAA 58.890 42.857 10.22 0.00 44.29 1.52
5945 6108 2.530700 CACGCGTTTTCGGCTTTTTAAA 59.469 40.909 10.22 0.00 44.29 1.52
5946 6109 2.531103 ACGCGTTTTCGGCTTTTTAAAC 59.469 40.909 5.58 0.00 44.29 2.01
5948 6111 3.739484 CGTTTTCGGCTTTTTAAACGG 57.261 42.857 10.17 0.00 45.26 4.44
5949 6112 3.107407 CGTTTTCGGCTTTTTAAACGGT 58.893 40.909 10.17 0.00 45.26 4.83
5950 6113 3.547068 CGTTTTCGGCTTTTTAAACGGTT 59.453 39.130 10.17 0.00 45.26 4.44
5951 6114 4.031539 CGTTTTCGGCTTTTTAAACGGTTT 59.968 37.500 11.33 11.33 45.26 3.27
5952 6115 5.444350 CGTTTTCGGCTTTTTAAACGGTTTT 60.444 36.000 11.87 0.00 45.26 2.43
5953 6116 6.305639 GTTTTCGGCTTTTTAAACGGTTTTT 58.694 32.000 11.87 0.00 0.00 1.94
5954 6117 5.699438 TTCGGCTTTTTAAACGGTTTTTC 57.301 34.783 11.87 0.00 0.00 2.29
5955 6118 4.111198 TCGGCTTTTTAAACGGTTTTTCC 58.889 39.130 11.87 4.00 0.00 3.13
5956 6119 3.245754 CGGCTTTTTAAACGGTTTTTCCC 59.754 43.478 11.87 3.94 0.00 3.97
5957 6120 3.560896 GGCTTTTTAAACGGTTTTTCCCC 59.439 43.478 11.87 2.34 0.00 4.81
5961 6124 2.899122 AAACGGTTTTTCCCCGGTT 58.101 47.368 0.00 0.00 46.72 4.44
5962 6125 2.899122 AACGGTTTTTCCCCGGTTT 58.101 47.368 0.00 0.00 44.63 3.27
5963 6126 1.193323 AACGGTTTTTCCCCGGTTTT 58.807 45.000 0.00 0.00 44.63 2.43
5964 6127 1.554160 AACGGTTTTTCCCCGGTTTTT 59.446 42.857 0.00 0.00 44.63 1.94
5983 6146 5.512573 TTTTTCGACGTTTTTGTTTTCCC 57.487 34.783 0.00 0.00 0.00 3.97
5984 6147 2.847959 TCGACGTTTTTGTTTTCCCC 57.152 45.000 0.00 0.00 0.00 4.81
5985 6148 1.063764 TCGACGTTTTTGTTTTCCCCG 59.936 47.619 0.00 0.00 0.00 5.73
5986 6149 1.842720 GACGTTTTTGTTTTCCCCGG 58.157 50.000 0.00 0.00 0.00 5.73
5987 6150 1.134753 GACGTTTTTGTTTTCCCCGGT 59.865 47.619 0.00 0.00 0.00 5.28
5988 6151 1.134753 ACGTTTTTGTTTTCCCCGGTC 59.865 47.619 0.00 0.00 0.00 4.79
5989 6152 1.406180 CGTTTTTGTTTTCCCCGGTCT 59.594 47.619 0.00 0.00 0.00 3.85
5990 6153 2.159212 CGTTTTTGTTTTCCCCGGTCTT 60.159 45.455 0.00 0.00 0.00 3.01
5991 6154 3.450578 GTTTTTGTTTTCCCCGGTCTTC 58.549 45.455 0.00 0.00 0.00 2.87
5992 6155 1.694844 TTTGTTTTCCCCGGTCTTCC 58.305 50.000 0.00 0.00 0.00 3.46
5993 6156 0.551879 TTGTTTTCCCCGGTCTTCCA 59.448 50.000 0.00 0.00 0.00 3.53
5994 6157 0.774908 TGTTTTCCCCGGTCTTCCAT 59.225 50.000 0.00 0.00 0.00 3.41
5995 6158 1.986631 TGTTTTCCCCGGTCTTCCATA 59.013 47.619 0.00 0.00 0.00 2.74
5996 6159 2.026636 TGTTTTCCCCGGTCTTCCATAG 60.027 50.000 0.00 0.00 0.00 2.23
5997 6160 0.544697 TTTCCCCGGTCTTCCATAGC 59.455 55.000 0.00 0.00 0.00 2.97
5998 6161 0.326238 TTCCCCGGTCTTCCATAGCT 60.326 55.000 0.00 0.00 0.00 3.32
5999 6162 0.326238 TCCCCGGTCTTCCATAGCTT 60.326 55.000 0.00 0.00 0.00 3.74
6000 6163 0.546598 CCCCGGTCTTCCATAGCTTT 59.453 55.000 0.00 0.00 0.00 3.51
6001 6164 1.475213 CCCCGGTCTTCCATAGCTTTC 60.475 57.143 0.00 0.00 0.00 2.62
6002 6165 1.486726 CCCGGTCTTCCATAGCTTTCT 59.513 52.381 0.00 0.00 0.00 2.52
6003 6166 2.555199 CCGGTCTTCCATAGCTTTCTG 58.445 52.381 0.00 0.00 0.00 3.02
6004 6167 2.168521 CCGGTCTTCCATAGCTTTCTGA 59.831 50.000 0.00 0.00 0.00 3.27
6005 6168 3.181461 CCGGTCTTCCATAGCTTTCTGAT 60.181 47.826 0.00 0.00 0.00 2.90
6006 6169 4.039245 CCGGTCTTCCATAGCTTTCTGATA 59.961 45.833 0.00 0.00 0.00 2.15
6007 6170 5.453339 CCGGTCTTCCATAGCTTTCTGATAA 60.453 44.000 0.00 0.00 0.00 1.75
6008 6171 6.049149 CGGTCTTCCATAGCTTTCTGATAAA 58.951 40.000 0.00 0.00 0.00 1.40
6009 6172 6.538742 CGGTCTTCCATAGCTTTCTGATAAAA 59.461 38.462 0.00 0.00 0.00 1.52
6010 6173 7.254590 CGGTCTTCCATAGCTTTCTGATAAAAG 60.255 40.741 0.00 0.00 38.91 2.27
6011 6174 7.770897 GGTCTTCCATAGCTTTCTGATAAAAGA 59.229 37.037 0.00 0.00 38.30 2.52
6012 6175 9.167311 GTCTTCCATAGCTTTCTGATAAAAGAA 57.833 33.333 0.00 0.00 38.30 2.52
6013 6176 9.911788 TCTTCCATAGCTTTCTGATAAAAGAAT 57.088 29.630 0.00 0.00 38.30 2.40
6015 6178 8.370493 TCCATAGCTTTCTGATAAAAGAATCG 57.630 34.615 0.00 0.00 38.30 3.34
6016 6179 8.204160 TCCATAGCTTTCTGATAAAAGAATCGA 58.796 33.333 0.00 0.00 38.30 3.59
6017 6180 8.997323 CCATAGCTTTCTGATAAAAGAATCGAT 58.003 33.333 0.00 0.00 38.30 3.59
6041 6204 5.683621 AAAAATTTACGCGAAAAACACGT 57.316 30.435 15.93 0.00 43.45 4.49
6042 6205 5.683621 AAAATTTACGCGAAAAACACGTT 57.316 30.435 15.93 1.44 40.99 3.99
6043 6206 5.683621 AAATTTACGCGAAAAACACGTTT 57.316 30.435 15.93 7.53 40.99 3.60
6044 6207 5.683621 AATTTACGCGAAAAACACGTTTT 57.316 30.435 15.93 2.06 43.88 2.43
6070 6233 3.854286 TTTTTCTTTCGCGAGAGTCAC 57.146 42.857 24.05 0.00 43.69 3.67
6071 6234 1.405461 TTTCTTTCGCGAGAGTCACG 58.595 50.000 24.05 5.53 43.69 4.35
6072 6235 0.386858 TTCTTTCGCGAGAGTCACGG 60.387 55.000 24.05 0.86 43.69 4.94
6073 6236 1.081376 CTTTCGCGAGAGTCACGGT 60.081 57.895 17.92 0.00 43.69 4.83
6074 6237 0.663568 CTTTCGCGAGAGTCACGGTT 60.664 55.000 17.92 0.00 43.69 4.44
6075 6238 0.249155 TTTCGCGAGAGTCACGGTTT 60.249 50.000 9.59 0.00 43.69 3.27
6076 6239 0.249155 TTCGCGAGAGTCACGGTTTT 60.249 50.000 9.59 0.00 43.69 2.43
6077 6240 0.249155 TCGCGAGAGTCACGGTTTTT 60.249 50.000 3.71 0.00 34.84 1.94
6078 6241 0.161024 CGCGAGAGTCACGGTTTTTC 59.839 55.000 11.95 0.00 0.00 2.29
6079 6242 1.499049 GCGAGAGTCACGGTTTTTCT 58.501 50.000 11.95 0.00 0.00 2.52
6080 6243 1.865340 GCGAGAGTCACGGTTTTTCTT 59.135 47.619 11.95 0.00 0.00 2.52
6081 6244 2.096860 GCGAGAGTCACGGTTTTTCTTC 60.097 50.000 11.95 0.00 0.00 2.87
6082 6245 2.475487 CGAGAGTCACGGTTTTTCTTCC 59.525 50.000 1.62 0.00 0.00 3.46
6090 6253 2.124122 CGGTTTTTCTTCCGCAAAAGG 58.876 47.619 0.00 0.00 40.28 3.11
6091 6254 1.864711 GGTTTTTCTTCCGCAAAAGGC 59.135 47.619 0.00 0.00 39.90 4.35
6092 6255 2.545731 GTTTTTCTTCCGCAAAAGGCA 58.454 42.857 0.00 0.00 45.17 4.75
6093 6256 2.217429 TTTTCTTCCGCAAAAGGCAC 57.783 45.000 0.00 0.00 45.17 5.01
6094 6257 0.030101 TTTCTTCCGCAAAAGGCACG 59.970 50.000 0.00 0.00 45.17 5.34
6096 6259 2.517402 TTCCGCAAAAGGCACGGT 60.517 55.556 0.00 0.00 46.92 4.83
6097 6260 2.070654 CTTCCGCAAAAGGCACGGTT 62.071 55.000 0.00 0.00 46.92 4.44
6098 6261 2.343163 TTCCGCAAAAGGCACGGTTG 62.343 55.000 0.00 0.00 46.92 3.77
6099 6262 2.411290 CGCAAAAGGCACGGTTGT 59.589 55.556 0.00 0.00 45.17 3.32
6109 6272 3.071495 CACGGTTGTGCTTTTAGCG 57.929 52.632 0.00 0.00 46.26 4.26
6110 6273 0.584396 CACGGTTGTGCTTTTAGCGA 59.416 50.000 0.00 0.00 46.26 4.93
6111 6274 0.865769 ACGGTTGTGCTTTTAGCGAG 59.134 50.000 0.00 0.00 46.26 5.03
6112 6275 1.144969 CGGTTGTGCTTTTAGCGAGA 58.855 50.000 0.00 0.00 46.26 4.04
6113 6276 1.126846 CGGTTGTGCTTTTAGCGAGAG 59.873 52.381 0.00 0.00 46.26 3.20
6114 6277 2.143925 GGTTGTGCTTTTAGCGAGAGT 58.856 47.619 0.00 0.00 46.26 3.24
6115 6278 2.157863 GGTTGTGCTTTTAGCGAGAGTC 59.842 50.000 0.00 0.00 46.26 3.36
6116 6279 2.800544 GTTGTGCTTTTAGCGAGAGTCA 59.199 45.455 0.00 0.00 46.26 3.41
6117 6280 2.404215 TGTGCTTTTAGCGAGAGTCAC 58.596 47.619 0.00 0.00 46.26 3.67
6118 6281 1.387084 GTGCTTTTAGCGAGAGTCACG 59.613 52.381 5.53 5.53 46.26 4.35
6119 6282 0.992802 GCTTTTAGCGAGAGTCACGG 59.007 55.000 11.95 0.00 0.00 4.94
6120 6283 0.992802 CTTTTAGCGAGAGTCACGGC 59.007 55.000 11.95 4.46 0.00 5.68
6121 6284 0.389426 TTTTAGCGAGAGTCACGGCC 60.389 55.000 11.95 0.00 0.00 6.13
6122 6285 2.537792 TTTAGCGAGAGTCACGGCCG 62.538 60.000 26.86 26.86 0.00 6.13
6135 6298 3.035727 GGCCGTGCCTTTCGAAAA 58.964 55.556 12.41 0.00 46.69 2.29
6136 6299 1.371267 GGCCGTGCCTTTCGAAAAC 60.371 57.895 12.41 6.59 46.69 2.43
6137 6300 1.724581 GCCGTGCCTTTCGAAAACG 60.725 57.895 21.03 21.03 0.00 3.60
6138 6301 1.082366 CCGTGCCTTTCGAAAACGG 60.082 57.895 28.34 28.34 46.69 4.44
6139 6302 1.082366 CGTGCCTTTCGAAAACGGG 60.082 57.895 20.48 15.45 0.00 5.28
6140 6303 1.500512 CGTGCCTTTCGAAAACGGGA 61.501 55.000 20.48 14.11 0.00 5.14
6141 6304 0.664224 GTGCCTTTCGAAAACGGGAA 59.336 50.000 16.52 5.19 0.00 3.97
6142 6305 1.065851 GTGCCTTTCGAAAACGGGAAA 59.934 47.619 16.52 3.42 0.00 3.13
6143 6306 1.749634 TGCCTTTCGAAAACGGGAAAA 59.250 42.857 16.52 1.32 32.27 2.29
6144 6307 2.165845 TGCCTTTCGAAAACGGGAAAAA 59.834 40.909 16.52 0.00 32.27 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.360165 GGCAAATGGCTTCATACAGGAG 59.640 50.000 0.00 0.00 44.01 3.69
41 42 1.134007 GGATGCATGGATCTGACACCA 60.134 52.381 24.25 7.65 40.57 4.17
111 112 3.063084 GAGGGCAGACGACGACCT 61.063 66.667 0.00 4.12 0.00 3.85
147 148 2.813908 CACCTAACGTGAGGGCGC 60.814 66.667 23.48 0.00 46.20 6.53
155 156 1.271656 GTGTAGACCTGCACCTAACGT 59.728 52.381 6.95 0.00 39.75 3.99
188 189 1.128692 CAACGCGAGATCTGGAAAACC 59.871 52.381 15.93 0.00 0.00 3.27
193 194 1.215382 CCACAACGCGAGATCTGGA 59.785 57.895 15.93 0.00 0.00 3.86
204 205 2.561037 GGCCCCAAAGACCACAACG 61.561 63.158 0.00 0.00 0.00 4.10
301 302 2.158696 GCTTGGAGATCAACCCAGCTAT 60.159 50.000 20.03 0.00 41.18 2.97
302 303 1.210478 GCTTGGAGATCAACCCAGCTA 59.790 52.381 20.03 1.57 41.18 3.32
304 305 0.034670 AGCTTGGAGATCAACCCAGC 60.035 55.000 19.84 19.84 43.57 4.85
305 306 2.026449 AGAAGCTTGGAGATCAACCCAG 60.026 50.000 2.10 0.71 33.43 4.45
307 308 2.797177 AGAAGCTTGGAGATCAACCC 57.203 50.000 2.10 0.00 0.00 4.11
341 342 0.107945 AGGAGACCAAATCAGAGCGC 60.108 55.000 0.00 0.00 0.00 5.92
361 362 2.037687 CACCCCACACATGCCCAT 59.962 61.111 0.00 0.00 0.00 4.00
401 402 0.880278 CATCATGGTTCCGGGCGTAG 60.880 60.000 0.00 0.00 0.00 3.51
403 404 2.124736 CATCATGGTTCCGGGCGT 60.125 61.111 0.00 0.00 0.00 5.68
404 405 2.901840 CCATCATGGTTCCGGGCG 60.902 66.667 0.00 0.00 31.35 6.13
418 419 3.446442 ACAGATTCAGCCAAGAACCAT 57.554 42.857 0.00 0.00 0.00 3.55
447 448 1.037493 AACCAGACTGAGTGCACGTA 58.963 50.000 12.01 3.40 0.00 3.57
460 461 2.022195 CCCGTCTCGAAGATAACCAGA 58.978 52.381 0.00 0.00 33.89 3.86
508 509 5.447548 CGTGACAAGTAAGCTACTCCTAGTC 60.448 48.000 0.00 0.00 38.26 2.59
517 518 2.153645 TCGGACGTGACAAGTAAGCTA 58.846 47.619 0.00 0.00 0.00 3.32
531 532 1.862008 GCTAGTTCATGAGCTCGGACG 60.862 57.143 16.01 2.46 35.73 4.79
591 593 4.980592 TGGGAGGTCAGCCAGCCA 62.981 66.667 0.00 0.00 37.19 4.75
594 596 0.038744 ATGTTTGGGAGGTCAGCCAG 59.961 55.000 0.00 0.00 37.19 4.85
602 604 1.816224 CCGGTTACAATGTTTGGGAGG 59.184 52.381 0.00 0.00 34.12 4.30
613 615 0.533308 GGTCACAGCACCGGTTACAA 60.533 55.000 2.97 0.00 0.00 2.41
622 624 4.626081 ACCAGGCGGTCACAGCAC 62.626 66.667 1.29 0.00 44.71 4.40
799 801 1.885887 CTGGTCAGCCGAATGGAAAAA 59.114 47.619 0.00 0.00 37.49 1.94
814 816 2.358737 CACCTTCACGGCCTGGTC 60.359 66.667 0.00 0.00 35.61 4.02
825 827 2.109126 GTGAGATGGGCGCACCTTC 61.109 63.158 7.46 14.33 40.88 3.46
874 876 2.258591 CTGGGTCGGACACTCGTG 59.741 66.667 12.28 0.00 0.00 4.35
1173 1199 2.882876 GTAGCGGAACCTGCGAGA 59.117 61.111 0.00 0.00 37.44 4.04
1232 1258 1.320344 ATAACCGAGCACGAGGAGCA 61.320 55.000 4.70 0.00 42.66 4.26
1251 1277 1.794116 GCTGGCAACGTAGTACGAAAA 59.206 47.619 28.47 8.55 45.00 2.29
1268 1294 4.692625 AGTACTATGAAACAACAGCAGCTG 59.307 41.667 21.54 21.54 37.52 4.24
1285 1311 3.881688 GACCGGAAGCAGTGATAGTACTA 59.118 47.826 9.46 4.77 0.00 1.82
1309 1341 5.756833 GGTAAACCATAGGAACACTAATCCG 59.243 44.000 0.00 0.00 37.75 4.18
1310 1342 6.060136 GGGTAAACCATAGGAACACTAATCC 58.940 44.000 0.81 0.00 39.85 3.01
1315 1347 4.172807 TGAGGGTAAACCATAGGAACACT 58.827 43.478 0.81 0.00 43.89 3.55
1316 1348 4.514401 CTGAGGGTAAACCATAGGAACAC 58.486 47.826 0.81 0.00 43.89 3.32
1318 1350 3.200165 AGCTGAGGGTAAACCATAGGAAC 59.800 47.826 0.81 0.00 43.89 3.62
1319 1351 3.199946 CAGCTGAGGGTAAACCATAGGAA 59.800 47.826 8.42 0.00 43.89 3.36
1321 1353 2.505819 ACAGCTGAGGGTAAACCATAGG 59.494 50.000 23.35 0.00 43.89 2.57
1322 1354 3.197766 TGACAGCTGAGGGTAAACCATAG 59.802 47.826 23.35 0.00 43.89 2.23
1323 1355 3.178046 TGACAGCTGAGGGTAAACCATA 58.822 45.455 23.35 0.00 43.89 2.74
1324 1356 1.985159 TGACAGCTGAGGGTAAACCAT 59.015 47.619 23.35 0.00 43.89 3.55
1325 1357 1.429930 TGACAGCTGAGGGTAAACCA 58.570 50.000 23.35 1.02 43.89 3.67
1326 1358 2.561478 TTGACAGCTGAGGGTAAACC 57.439 50.000 23.35 0.00 40.67 3.27
1327 1359 3.674997 TGATTGACAGCTGAGGGTAAAC 58.325 45.455 23.35 7.03 0.00 2.01
1328 1360 3.942829 CTGATTGACAGCTGAGGGTAAA 58.057 45.455 23.35 5.41 39.86 2.01
1329 1361 3.616956 CTGATTGACAGCTGAGGGTAA 57.383 47.619 23.35 7.93 39.86 2.85
1339 1371 7.846644 AGAAGAATCTAAAGCTGATTGACAG 57.153 36.000 2.70 0.00 40.85 3.51
1340 1372 7.361542 GCAAGAAGAATCTAAAGCTGATTGACA 60.362 37.037 2.70 0.00 34.67 3.58
1341 1373 6.966066 GCAAGAAGAATCTAAAGCTGATTGAC 59.034 38.462 2.70 0.00 34.67 3.18
1342 1374 6.883217 AGCAAGAAGAATCTAAAGCTGATTGA 59.117 34.615 2.70 0.00 37.17 2.57
1343 1375 7.086230 AGCAAGAAGAATCTAAAGCTGATTG 57.914 36.000 2.70 0.00 37.17 2.67
1344 1376 7.700022 AAGCAAGAAGAATCTAAAGCTGATT 57.300 32.000 0.00 0.00 38.01 2.57
1345 1377 8.046107 AGTAAGCAAGAAGAATCTAAAGCTGAT 58.954 33.333 0.00 0.00 38.01 2.90
1346 1378 7.390027 AGTAAGCAAGAAGAATCTAAAGCTGA 58.610 34.615 0.00 0.00 38.01 4.26
1347 1379 7.608308 AGTAAGCAAGAAGAATCTAAAGCTG 57.392 36.000 0.00 0.00 38.01 4.24
1348 1380 7.880195 TCAAGTAAGCAAGAAGAATCTAAAGCT 59.120 33.333 0.00 0.00 38.98 3.74
1349 1381 8.034058 TCAAGTAAGCAAGAAGAATCTAAAGC 57.966 34.615 0.00 0.00 33.77 3.51
1351 1383 9.561069 ACTTCAAGTAAGCAAGAAGAATCTAAA 57.439 29.630 7.90 0.00 39.78 1.85
1352 1384 9.561069 AACTTCAAGTAAGCAAGAAGAATCTAA 57.439 29.630 7.90 0.00 39.78 2.10
1353 1385 9.561069 AAACTTCAAGTAAGCAAGAAGAATCTA 57.439 29.630 7.90 0.00 39.78 1.98
1354 1386 8.348507 CAAACTTCAAGTAAGCAAGAAGAATCT 58.651 33.333 7.90 0.00 39.78 2.40
1355 1387 7.592903 CCAAACTTCAAGTAAGCAAGAAGAATC 59.407 37.037 7.90 0.00 39.78 2.52
1356 1388 7.285401 TCCAAACTTCAAGTAAGCAAGAAGAAT 59.715 33.333 7.90 0.00 39.78 2.40
1357 1389 6.601613 TCCAAACTTCAAGTAAGCAAGAAGAA 59.398 34.615 7.90 0.00 39.78 2.52
1358 1390 6.119536 TCCAAACTTCAAGTAAGCAAGAAGA 58.880 36.000 7.90 0.00 39.78 2.87
1359 1391 6.377327 TCCAAACTTCAAGTAAGCAAGAAG 57.623 37.500 0.00 0.00 42.32 2.85
1373 1405 1.275573 ACCTCTACGGCTCCAAACTTC 59.724 52.381 0.00 0.00 35.61 3.01
1374 1406 1.349067 ACCTCTACGGCTCCAAACTT 58.651 50.000 0.00 0.00 35.61 2.66
1375 1407 1.349067 AACCTCTACGGCTCCAAACT 58.651 50.000 0.00 0.00 35.61 2.66
1427 1459 3.441222 TCTGCATTAACCACATGAGCTTG 59.559 43.478 0.00 0.00 0.00 4.01
1469 1501 9.790389 TTAATTATGCGAAAAACGACCAAATAT 57.210 25.926 0.00 0.00 45.77 1.28
1607 1639 7.294676 TCAAATAAACATCATCAGTGAGACG 57.705 36.000 0.00 0.00 37.87 4.18
1609 1641 7.283807 CCCATCAAATAAACATCATCAGTGAGA 59.716 37.037 0.00 0.00 37.87 3.27
1618 1650 6.361433 ACGGATACCCATCAAATAAACATCA 58.639 36.000 0.00 0.00 32.32 3.07
1619 1651 6.877611 ACGGATACCCATCAAATAAACATC 57.122 37.500 0.00 0.00 32.32 3.06
1620 1652 7.340743 TCAAACGGATACCCATCAAATAAACAT 59.659 33.333 0.00 0.00 32.32 2.71
1624 1656 6.238897 GCATCAAACGGATACCCATCAAATAA 60.239 38.462 0.00 0.00 33.95 1.40
1625 1657 5.240623 GCATCAAACGGATACCCATCAAATA 59.759 40.000 0.00 0.00 33.95 1.40
1651 1707 7.744087 ATTGTAATAACACAAAGACAGCTCA 57.256 32.000 0.00 0.00 41.50 4.26
1851 1916 8.877864 TCAAAATCACAGATAAAATGTAGGGT 57.122 30.769 0.00 0.00 0.00 4.34
1927 1992 3.482819 TGCCAATGCCAGCATAAAGCG 62.483 52.381 5.39 0.00 42.73 4.68
2166 2238 9.832445 GGAAACATAGATATCTAGTTCCACAAA 57.168 33.333 28.03 7.16 37.55 2.83
2362 2434 9.354673 CTCCCATAAATGTACAGGTTTATCAAT 57.645 33.333 10.26 0.00 30.32 2.57
2368 2440 7.023171 TGTACTCCCATAAATGTACAGGTTT 57.977 36.000 0.33 0.42 39.85 3.27
2425 2502 6.349944 CGATTAGGTACTTACAACAGGTCTGT 60.350 42.308 0.00 0.00 43.14 3.41
2436 2513 5.197682 AGCATGGACGATTAGGTACTTAC 57.802 43.478 0.00 0.00 41.75 2.34
2580 2659 9.347934 CAAAGAGACTGTGTTACTACTATTGAG 57.652 37.037 0.00 0.00 0.00 3.02
2629 2708 6.542370 CGAGTATCCCACACCTAAAATTGAAT 59.458 38.462 0.00 0.00 0.00 2.57
2868 2948 5.584913 AGAAAGAGAGATTGGTAGACCTCA 58.415 41.667 0.00 0.00 36.82 3.86
3079 3160 6.266103 ACATTGATTACCATAATGCCAAGGAG 59.734 38.462 0.00 0.00 35.71 3.69
3080 3161 6.135454 ACATTGATTACCATAATGCCAAGGA 58.865 36.000 0.00 0.00 35.71 3.36
3422 3503 9.744468 AGTTTTGTTCAGTAACCATGAAATTAC 57.256 29.630 0.00 0.32 38.34 1.89
3519 3600 3.007635 GTCCTTAAAATGTCCCCACGAG 58.992 50.000 0.00 0.00 0.00 4.18
3715 3796 9.713713 AGAAAACTAGAGAAAATAAGGAGTGTC 57.286 33.333 0.00 0.00 0.00 3.67
3738 3819 8.147058 TGGCTAGCATTTAAAATGAAAACAGAA 58.853 29.630 18.24 0.00 0.00 3.02
3797 3878 8.657387 ATGTACATTACAGAGGATACAGCTAT 57.343 34.615 1.41 0.00 42.77 2.97
3893 3974 9.740710 ATACTGAATAAAGCCTGATATTTACCC 57.259 33.333 0.00 0.00 0.00 3.69
4012 4094 5.932303 TGTTCAAACTACTCTGCTTATCACC 59.068 40.000 0.00 0.00 0.00 4.02
4028 4110 6.975772 TGGTTTAAGCTGTAACATGTTCAAAC 59.024 34.615 15.85 8.72 0.00 2.93
4378 4460 9.696917 GGAGGGCATGATAAAATAACAAATAAG 57.303 33.333 0.00 0.00 0.00 1.73
4528 4613 4.307032 ACATGGCACTTCTTGGAGTAAT 57.693 40.909 0.00 0.00 0.00 1.89
4547 4632 6.170506 GGTACAGACATAATGGTTGAGAACA 58.829 40.000 0.00 0.00 0.00 3.18
4569 4654 2.665185 GTGCGAGAAACCTGCGGT 60.665 61.111 0.00 0.00 37.65 5.68
4676 4761 4.261825 GCCTGGTTAGATCACTGCTAGTAG 60.262 50.000 6.26 6.26 0.00 2.57
4708 4793 1.590932 CATGTCCCAGAGCTGCATAC 58.409 55.000 1.02 0.00 0.00 2.39
4903 4988 1.525077 GGCTGGTTGTGGTTGACGA 60.525 57.895 0.00 0.00 0.00 4.20
4904 4989 2.892334 CGGCTGGTTGTGGTTGACG 61.892 63.158 0.00 0.00 0.00 4.35
4979 5067 2.679930 GCAGGCATAGGTCTTACCGTTT 60.680 50.000 0.00 0.00 44.90 3.60
5077 5165 2.142357 TTGCTCCTCGACACTGTCCG 62.142 60.000 3.50 0.00 0.00 4.79
5103 5191 2.283460 AGCTTCTTGCCCTTGCCC 60.283 61.111 0.00 0.00 44.23 5.36
5198 5286 3.694072 TCAAAACTGACCCTTGACAAGTG 59.306 43.478 14.03 5.26 0.00 3.16
5210 5300 5.741388 ACTGAGACAACATCAAAACTGAC 57.259 39.130 0.00 0.00 0.00 3.51
5211 5301 9.371136 GATATACTGAGACAACATCAAAACTGA 57.629 33.333 0.00 0.00 0.00 3.41
5280 5373 5.683876 ACTATGATAGCCAAGTTCACACT 57.316 39.130 0.00 0.00 33.11 3.55
5375 5480 2.092429 AGAGAACAAGGCAGGACACAAA 60.092 45.455 0.00 0.00 0.00 2.83
5411 5516 2.480419 CGAGACAAAAACGAGCCAGAAT 59.520 45.455 0.00 0.00 0.00 2.40
5413 5518 1.067974 TCGAGACAAAAACGAGCCAGA 59.932 47.619 0.00 0.00 0.00 3.86
5415 5520 1.497991 CTCGAGACAAAAACGAGCCA 58.502 50.000 6.58 0.00 44.67 4.75
5420 5525 2.206750 TGGGAACTCGAGACAAAAACG 58.793 47.619 21.68 0.00 0.00 3.60
5421 5526 2.548480 CCTGGGAACTCGAGACAAAAAC 59.452 50.000 21.68 3.01 0.00 2.43
5422 5527 2.846193 CCTGGGAACTCGAGACAAAAA 58.154 47.619 21.68 0.00 0.00 1.94
5433 5584 0.472471 TTCGTTCTTGCCTGGGAACT 59.528 50.000 0.00 0.00 39.47 3.01
5438 5589 0.523072 CCATGTTCGTTCTTGCCTGG 59.477 55.000 0.00 0.00 0.00 4.45
5454 5606 1.959085 CGTGCAAGCTGGTTTCCAT 59.041 52.632 0.00 0.00 30.82 3.41
5455 5607 2.844451 GCGTGCAAGCTGGTTTCCA 61.844 57.895 17.84 0.00 0.00 3.53
5483 5635 2.862541 TGCTAGCCACTGTGATTTTGT 58.137 42.857 13.29 0.00 0.00 2.83
5488 5640 2.804572 CGCTTATGCTAGCCACTGTGAT 60.805 50.000 13.29 0.00 37.90 3.06
5493 5645 1.227674 GCCGCTTATGCTAGCCACT 60.228 57.895 13.29 0.00 37.90 4.00
5555 5716 7.740781 GCAAAGTACGTAGCTCTTTCTTTAAAG 59.259 37.037 9.04 9.04 42.99 1.85
5705 5868 1.371267 GACAAAAGGGCCGAAACGC 60.371 57.895 0.00 0.00 0.00 4.84
5706 5869 0.382515 TTGACAAAAGGGCCGAAACG 59.617 50.000 0.00 0.00 0.00 3.60
5707 5870 2.159156 AGTTTGACAAAAGGGCCGAAAC 60.159 45.455 1.27 0.62 0.00 2.78
5708 5871 2.104170 AGTTTGACAAAAGGGCCGAAA 58.896 42.857 1.27 0.00 0.00 3.46
5709 5872 1.770294 AGTTTGACAAAAGGGCCGAA 58.230 45.000 1.27 0.00 0.00 4.30
5710 5873 1.770294 AAGTTTGACAAAAGGGCCGA 58.230 45.000 1.27 0.00 0.00 5.54
5711 5874 2.595124 AAAGTTTGACAAAAGGGCCG 57.405 45.000 1.27 0.00 0.00 6.13
5712 5875 3.390135 GCTAAAGTTTGACAAAAGGGCC 58.610 45.455 1.27 0.00 0.00 5.80
5713 5876 3.049912 CGCTAAAGTTTGACAAAAGGGC 58.950 45.455 1.27 2.98 0.00 5.19
5714 5877 3.552068 CCCGCTAAAGTTTGACAAAAGGG 60.552 47.826 1.27 4.98 0.00 3.95
5715 5878 3.316868 TCCCGCTAAAGTTTGACAAAAGG 59.683 43.478 1.27 0.00 0.00 3.11
5716 5879 4.561735 TCCCGCTAAAGTTTGACAAAAG 57.438 40.909 1.27 0.00 0.00 2.27
5717 5880 4.825085 AGATCCCGCTAAAGTTTGACAAAA 59.175 37.500 1.27 0.00 0.00 2.44
5718 5881 4.394729 AGATCCCGCTAAAGTTTGACAAA 58.605 39.130 0.00 0.00 0.00 2.83
5719 5882 4.015872 AGATCCCGCTAAAGTTTGACAA 57.984 40.909 0.00 0.00 0.00 3.18
5720 5883 3.695830 AGATCCCGCTAAAGTTTGACA 57.304 42.857 0.00 0.00 0.00 3.58
5721 5884 5.416947 TCTTAGATCCCGCTAAAGTTTGAC 58.583 41.667 0.00 0.00 30.55 3.18
5722 5885 5.661458 CTCTTAGATCCCGCTAAAGTTTGA 58.339 41.667 0.00 0.00 30.55 2.69
5723 5886 4.271291 GCTCTTAGATCCCGCTAAAGTTTG 59.729 45.833 0.00 0.00 30.55 2.93
5724 5887 4.081087 TGCTCTTAGATCCCGCTAAAGTTT 60.081 41.667 0.00 0.00 30.55 2.66
5725 5888 3.451178 TGCTCTTAGATCCCGCTAAAGTT 59.549 43.478 0.00 0.00 30.55 2.66
5726 5889 3.031736 TGCTCTTAGATCCCGCTAAAGT 58.968 45.455 0.00 0.00 30.55 2.66
5727 5890 3.735237 TGCTCTTAGATCCCGCTAAAG 57.265 47.619 0.00 0.00 30.55 1.85
5728 5891 3.451178 AGTTGCTCTTAGATCCCGCTAAA 59.549 43.478 0.00 0.00 30.55 1.85
5729 5892 3.031736 AGTTGCTCTTAGATCCCGCTAA 58.968 45.455 0.00 0.00 0.00 3.09
5730 5893 2.623889 GAGTTGCTCTTAGATCCCGCTA 59.376 50.000 0.00 0.00 0.00 4.26
5731 5894 1.410882 GAGTTGCTCTTAGATCCCGCT 59.589 52.381 0.00 0.00 0.00 5.52
5732 5895 1.539280 GGAGTTGCTCTTAGATCCCGC 60.539 57.143 0.00 0.00 0.00 6.13
5733 5896 1.757118 TGGAGTTGCTCTTAGATCCCG 59.243 52.381 0.00 0.00 0.00 5.14
5734 5897 3.536570 GTTGGAGTTGCTCTTAGATCCC 58.463 50.000 0.00 0.00 0.00 3.85
5735 5898 3.190874 CGTTGGAGTTGCTCTTAGATCC 58.809 50.000 0.00 0.00 0.00 3.36
5736 5899 3.190874 CCGTTGGAGTTGCTCTTAGATC 58.809 50.000 0.00 0.00 0.00 2.75
5737 5900 2.093447 CCCGTTGGAGTTGCTCTTAGAT 60.093 50.000 0.00 0.00 0.00 1.98
5738 5901 1.275291 CCCGTTGGAGTTGCTCTTAGA 59.725 52.381 0.00 0.00 0.00 2.10
5739 5902 1.726853 CCCGTTGGAGTTGCTCTTAG 58.273 55.000 0.00 0.00 0.00 2.18
5740 5903 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
5741 5904 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
5742 5905 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
5743 5906 2.032681 AGCCCGTTGGAGTTGCTC 59.967 61.111 0.00 0.00 0.00 4.26
5744 5907 2.032681 GAGCCCGTTGGAGTTGCT 59.967 61.111 0.00 0.00 34.40 3.91
5745 5908 2.281484 TGAGCCCGTTGGAGTTGC 60.281 61.111 0.00 0.00 0.00 4.17
5746 5909 1.966451 GGTGAGCCCGTTGGAGTTG 60.966 63.158 0.00 0.00 0.00 3.16
5747 5910 0.834687 TAGGTGAGCCCGTTGGAGTT 60.835 55.000 0.00 0.00 38.74 3.01
5748 5911 0.834687 TTAGGTGAGCCCGTTGGAGT 60.835 55.000 0.00 0.00 38.74 3.85
5749 5912 0.323629 TTTAGGTGAGCCCGTTGGAG 59.676 55.000 0.00 0.00 38.74 3.86
5750 5913 0.988832 ATTTAGGTGAGCCCGTTGGA 59.011 50.000 0.00 0.00 38.74 3.53
5751 5914 1.094785 CATTTAGGTGAGCCCGTTGG 58.905 55.000 0.00 0.00 38.74 3.77
5752 5915 0.451783 GCATTTAGGTGAGCCCGTTG 59.548 55.000 0.00 0.00 38.74 4.10
5753 5916 0.037590 TGCATTTAGGTGAGCCCGTT 59.962 50.000 0.00 0.00 38.74 4.44
5754 5917 0.255890 ATGCATTTAGGTGAGCCCGT 59.744 50.000 0.00 0.00 38.74 5.28
5755 5918 0.664761 CATGCATTTAGGTGAGCCCG 59.335 55.000 0.00 0.00 38.74 6.13
5756 5919 1.035139 CCATGCATTTAGGTGAGCCC 58.965 55.000 0.00 0.00 34.57 5.19
5757 5920 0.386838 GCCATGCATTTAGGTGAGCC 59.613 55.000 0.00 0.00 0.00 4.70
5758 5921 0.029834 CGCCATGCATTTAGGTGAGC 59.970 55.000 9.00 0.00 34.93 4.26
5759 5922 0.029834 GCGCCATGCATTTAGGTGAG 59.970 55.000 16.94 4.88 45.45 3.51
5760 5923 2.105984 GCGCCATGCATTTAGGTGA 58.894 52.632 16.94 0.00 45.45 4.02
5761 5924 4.715983 GCGCCATGCATTTAGGTG 57.284 55.556 10.07 10.07 45.45 4.00
5770 5933 2.580326 CGGACAAATGCGCCATGC 60.580 61.111 4.18 0.00 46.70 4.06
5790 5953 5.113383 TCGACAACTAGTTGCTCTCAAAAA 58.887 37.500 30.97 8.23 44.03 1.94
5791 5954 4.689071 TCGACAACTAGTTGCTCTCAAAA 58.311 39.130 30.97 10.28 44.03 2.44
5792 5955 4.299155 CTCGACAACTAGTTGCTCTCAAA 58.701 43.478 30.97 13.57 44.03 2.69
5793 5956 3.857383 GCTCGACAACTAGTTGCTCTCAA 60.857 47.826 30.97 9.85 44.03 3.02
5794 5957 2.351835 GCTCGACAACTAGTTGCTCTCA 60.352 50.000 30.97 16.29 44.03 3.27
5795 5958 2.255316 GCTCGACAACTAGTTGCTCTC 58.745 52.381 30.97 21.07 44.03 3.20
5796 5959 1.613925 TGCTCGACAACTAGTTGCTCT 59.386 47.619 30.97 15.29 44.03 4.09
5797 5960 1.721926 GTGCTCGACAACTAGTTGCTC 59.278 52.381 30.97 24.45 44.03 4.26
5798 5961 1.341531 AGTGCTCGACAACTAGTTGCT 59.658 47.619 30.97 19.76 44.03 3.91
5799 5962 1.784525 AGTGCTCGACAACTAGTTGC 58.215 50.000 30.97 22.56 44.03 4.17
5800 5963 3.426859 CAGAAGTGCTCGACAACTAGTTG 59.573 47.826 29.76 29.76 45.58 3.16
5801 5964 3.318275 TCAGAAGTGCTCGACAACTAGTT 59.682 43.478 1.12 1.12 0.00 2.24
5802 5965 2.885266 TCAGAAGTGCTCGACAACTAGT 59.115 45.455 0.00 0.00 0.00 2.57
5803 5966 3.189495 TCTCAGAAGTGCTCGACAACTAG 59.811 47.826 0.00 0.00 0.00 2.57
5804 5967 3.146847 TCTCAGAAGTGCTCGACAACTA 58.853 45.455 0.00 0.00 0.00 2.24
5805 5968 1.957177 TCTCAGAAGTGCTCGACAACT 59.043 47.619 0.00 0.00 0.00 3.16
5806 5969 2.323959 CTCTCAGAAGTGCTCGACAAC 58.676 52.381 0.00 0.00 0.00 3.32
5807 5970 1.336332 GCTCTCAGAAGTGCTCGACAA 60.336 52.381 0.00 0.00 38.64 3.18
5808 5971 0.242286 GCTCTCAGAAGTGCTCGACA 59.758 55.000 0.00 0.00 38.64 4.35
5809 5972 0.457681 GGCTCTCAGAAGTGCTCGAC 60.458 60.000 0.27 0.00 40.91 4.20
5810 5973 0.610509 AGGCTCTCAGAAGTGCTCGA 60.611 55.000 0.27 0.00 40.91 4.04
5811 5974 0.179140 GAGGCTCTCAGAAGTGCTCG 60.179 60.000 7.40 0.00 40.91 5.03
5812 5975 0.179140 CGAGGCTCTCAGAAGTGCTC 60.179 60.000 13.50 0.00 40.91 4.26
5813 5976 1.889454 CGAGGCTCTCAGAAGTGCT 59.111 57.895 13.50 0.00 40.91 4.40
5814 5977 1.809209 GCGAGGCTCTCAGAAGTGC 60.809 63.158 13.50 1.82 40.50 4.40
5815 5978 0.458197 CTGCGAGGCTCTCAGAAGTG 60.458 60.000 26.34 2.58 31.20 3.16
5816 5979 1.889454 CTGCGAGGCTCTCAGAAGT 59.111 57.895 26.34 0.00 31.20 3.01
5817 5980 1.519013 GCTGCGAGGCTCTCAGAAG 60.519 63.158 32.56 14.08 31.20 2.85
5818 5981 2.575993 GCTGCGAGGCTCTCAGAA 59.424 61.111 32.56 3.57 31.20 3.02
5819 5982 3.819920 CGCTGCGAGGCTCTCAGA 61.820 66.667 32.56 1.56 31.20 3.27
5820 5983 3.136345 ATCGCTGCGAGGCTCTCAG 62.136 63.158 29.23 26.16 39.91 3.35
5821 5984 3.131196 GATCGCTGCGAGGCTCTCA 62.131 63.158 29.23 10.21 39.91 3.27
5822 5985 2.354539 GATCGCTGCGAGGCTCTC 60.355 66.667 29.23 17.74 39.91 3.20
5823 5986 3.136345 CTGATCGCTGCGAGGCTCT 62.136 63.158 29.23 12.96 39.91 4.09
5824 5987 2.657944 CTGATCGCTGCGAGGCTC 60.658 66.667 29.23 21.68 39.91 4.70
5825 5988 4.887987 GCTGATCGCTGCGAGGCT 62.888 66.667 29.23 13.77 39.91 4.58
5835 5998 2.792290 CGTCAAGTGGCGCTGATCG 61.792 63.158 7.64 6.20 35.94 3.69
5836 5999 3.084579 CGTCAAGTGGCGCTGATC 58.915 61.111 7.64 0.00 35.94 2.92
5843 6006 3.482783 GAGAGCGCGTCAAGTGGC 61.483 66.667 8.43 0.00 0.00 5.01
5844 6007 2.049156 TGAGAGCGCGTCAAGTGG 60.049 61.111 8.43 0.00 0.00 4.00
5845 6008 2.724708 GCTGAGAGCGCGTCAAGTG 61.725 63.158 15.16 6.57 0.00 3.16
5846 6009 2.431601 GCTGAGAGCGCGTCAAGT 60.432 61.111 15.16 0.00 0.00 3.16
5847 6010 3.184683 GGCTGAGAGCGCGTCAAG 61.185 66.667 15.16 7.71 43.62 3.02
5848 6011 2.786539 AATGGCTGAGAGCGCGTCAA 62.787 55.000 15.16 3.14 43.62 3.18
5849 6012 3.300934 AATGGCTGAGAGCGCGTCA 62.301 57.895 8.43 13.87 43.62 4.35
5850 6013 2.510238 AATGGCTGAGAGCGCGTC 60.510 61.111 8.43 3.41 43.62 5.19
5851 6014 2.510238 GAATGGCTGAGAGCGCGT 60.510 61.111 8.43 0.00 43.62 6.01
5852 6015 3.624300 CGAATGGCTGAGAGCGCG 61.624 66.667 0.00 0.00 43.62 6.86
5853 6016 2.510238 ACGAATGGCTGAGAGCGC 60.510 61.111 0.00 0.00 43.62 5.92
5854 6017 1.153765 TGACGAATGGCTGAGAGCG 60.154 57.895 0.00 0.00 43.62 5.03
5855 6018 1.416813 CGTGACGAATGGCTGAGAGC 61.417 60.000 0.00 0.00 41.46 4.09
5856 6019 0.109086 ACGTGACGAATGGCTGAGAG 60.109 55.000 13.70 0.00 0.00 3.20
5857 6020 0.388520 CACGTGACGAATGGCTGAGA 60.389 55.000 13.70 0.00 0.00 3.27
5858 6021 0.667487 ACACGTGACGAATGGCTGAG 60.667 55.000 25.01 0.00 0.00 3.35
5859 6022 0.666274 GACACGTGACGAATGGCTGA 60.666 55.000 25.01 0.00 0.00 4.26
5860 6023 1.781555 GACACGTGACGAATGGCTG 59.218 57.895 25.01 0.00 0.00 4.85
5861 6024 1.733041 CGACACGTGACGAATGGCT 60.733 57.895 31.37 1.47 35.37 4.75
5862 6025 2.769617 CGACACGTGACGAATGGC 59.230 61.111 31.37 0.64 35.37 4.40
5863 6026 2.769617 GCGACACGTGACGAATGG 59.230 61.111 37.05 13.87 35.37 3.16
5864 6027 2.386491 CGCGACACGTGACGAATG 59.614 61.111 37.05 23.58 39.94 2.67
5865 6028 3.467119 GCGCGACACGTGACGAAT 61.467 61.111 37.05 10.08 46.11 3.34
5866 6029 4.617486 AGCGCGACACGTGACGAA 62.617 61.111 37.05 0.00 46.11 3.85
5869 6032 3.461982 CAGAGCGCGACACGTGAC 61.462 66.667 25.01 16.07 46.11 3.67
5870 6033 4.700365 CCAGAGCGCGACACGTGA 62.700 66.667 25.01 0.00 46.11 4.35
5871 6034 4.700365 TCCAGAGCGCGACACGTG 62.700 66.667 15.48 15.48 46.11 4.49
5872 6035 3.898627 CTTCCAGAGCGCGACACGT 62.899 63.158 12.10 0.00 46.11 4.49
5874 6037 3.482783 GCTTCCAGAGCGCGACAC 61.483 66.667 12.10 0.00 42.46 3.67
5908 6071 4.036352 ACGCGTGCGAAAAATAAGAAAAA 58.964 34.783 22.32 0.00 42.83 1.94
5909 6072 3.619729 ACGCGTGCGAAAAATAAGAAAA 58.380 36.364 22.32 0.00 42.83 2.29
5910 6073 3.256285 ACGCGTGCGAAAAATAAGAAA 57.744 38.095 22.32 0.00 42.83 2.52
5911 6074 2.953640 ACGCGTGCGAAAAATAAGAA 57.046 40.000 22.32 0.00 42.83 2.52
5912 6075 2.953640 AACGCGTGCGAAAAATAAGA 57.046 40.000 22.32 0.00 42.83 2.10
5913 6076 3.475938 CGAAAACGCGTGCGAAAAATAAG 60.476 43.478 22.32 0.80 42.83 1.73
5914 6077 2.397802 CGAAAACGCGTGCGAAAAATAA 59.602 40.909 22.32 0.00 42.83 1.40
5915 6078 1.963883 CGAAAACGCGTGCGAAAAATA 59.036 42.857 22.32 0.00 42.83 1.40
5916 6079 0.767687 CGAAAACGCGTGCGAAAAAT 59.232 45.000 22.32 1.99 42.83 1.82
5917 6080 1.194896 CCGAAAACGCGTGCGAAAAA 61.195 50.000 24.61 0.00 42.83 1.94
5918 6081 1.651730 CCGAAAACGCGTGCGAAAA 60.652 52.632 24.61 0.00 42.83 2.29
5919 6082 2.052941 CCGAAAACGCGTGCGAAA 60.053 55.556 24.61 0.00 42.83 3.46
5920 6083 4.653252 GCCGAAAACGCGTGCGAA 62.653 61.111 24.61 0.00 42.83 4.70
5922 6085 4.659874 AAGCCGAAAACGCGTGCG 62.660 61.111 14.98 17.33 46.03 5.34
5923 6086 1.476235 AAAAAGCCGAAAACGCGTGC 61.476 50.000 14.98 12.13 0.00 5.34
5924 6087 1.744374 TAAAAAGCCGAAAACGCGTG 58.256 45.000 14.98 0.00 0.00 5.34
5925 6088 2.471862 TTAAAAAGCCGAAAACGCGT 57.528 40.000 5.58 5.58 0.00 6.01
5926 6089 2.406245 CGTTTAAAAAGCCGAAAACGCG 60.406 45.455 3.53 3.53 44.94 6.01
5927 6090 3.130797 CGTTTAAAAAGCCGAAAACGC 57.869 42.857 6.30 0.00 44.94 4.84
5929 6092 5.453281 AAACCGTTTAAAAAGCCGAAAAC 57.547 34.783 0.00 0.00 0.00 2.43
5930 6093 6.401903 GGAAAAACCGTTTAAAAAGCCGAAAA 60.402 34.615 0.00 0.00 0.00 2.29
5931 6094 5.063186 GGAAAAACCGTTTAAAAAGCCGAAA 59.937 36.000 0.00 0.00 0.00 3.46
5932 6095 4.565962 GGAAAAACCGTTTAAAAAGCCGAA 59.434 37.500 0.00 0.00 0.00 4.30
5933 6096 4.111198 GGAAAAACCGTTTAAAAAGCCGA 58.889 39.130 0.00 0.00 0.00 5.54
5934 6097 3.245754 GGGAAAAACCGTTTAAAAAGCCG 59.754 43.478 0.00 0.00 40.11 5.52
5935 6098 3.560896 GGGGAAAAACCGTTTAAAAAGCC 59.439 43.478 0.00 0.00 40.11 4.35
5936 6099 3.245754 CGGGGAAAAACCGTTTAAAAAGC 59.754 43.478 0.00 0.00 46.03 3.51
5961 6124 4.388165 GGGGAAAACAAAAACGTCGAAAAA 59.612 37.500 0.00 0.00 0.00 1.94
5962 6125 3.925299 GGGGAAAACAAAAACGTCGAAAA 59.075 39.130 0.00 0.00 0.00 2.29
5963 6126 3.509740 GGGGAAAACAAAAACGTCGAAA 58.490 40.909 0.00 0.00 0.00 3.46
5964 6127 2.477525 CGGGGAAAACAAAAACGTCGAA 60.478 45.455 0.00 0.00 0.00 3.71
5965 6128 1.063764 CGGGGAAAACAAAAACGTCGA 59.936 47.619 0.00 0.00 0.00 4.20
5966 6129 1.468895 CGGGGAAAACAAAAACGTCG 58.531 50.000 0.00 0.00 0.00 5.12
5967 6130 1.134753 ACCGGGGAAAACAAAAACGTC 59.865 47.619 6.32 0.00 0.00 4.34
5968 6131 1.134753 GACCGGGGAAAACAAAAACGT 59.865 47.619 6.32 0.00 0.00 3.99
5969 6132 1.406180 AGACCGGGGAAAACAAAAACG 59.594 47.619 6.32 0.00 0.00 3.60
5970 6133 3.450578 GAAGACCGGGGAAAACAAAAAC 58.549 45.455 6.32 0.00 0.00 2.43
5971 6134 2.431419 GGAAGACCGGGGAAAACAAAAA 59.569 45.455 6.32 0.00 0.00 1.94
5972 6135 2.033372 GGAAGACCGGGGAAAACAAAA 58.967 47.619 6.32 0.00 0.00 2.44
5973 6136 1.063867 TGGAAGACCGGGGAAAACAAA 60.064 47.619 6.32 0.00 39.42 2.83
5974 6137 0.551879 TGGAAGACCGGGGAAAACAA 59.448 50.000 6.32 0.00 39.42 2.83
5975 6138 0.774908 ATGGAAGACCGGGGAAAACA 59.225 50.000 6.32 0.00 39.42 2.83
5976 6139 2.640184 CTATGGAAGACCGGGGAAAAC 58.360 52.381 6.32 0.00 39.42 2.43
5977 6140 1.064979 GCTATGGAAGACCGGGGAAAA 60.065 52.381 6.32 0.00 39.42 2.29
5978 6141 0.544697 GCTATGGAAGACCGGGGAAA 59.455 55.000 6.32 0.00 39.42 3.13
5979 6142 0.326238 AGCTATGGAAGACCGGGGAA 60.326 55.000 6.32 0.00 39.42 3.97
5980 6143 0.326238 AAGCTATGGAAGACCGGGGA 60.326 55.000 6.32 0.00 39.42 4.81
5981 6144 0.546598 AAAGCTATGGAAGACCGGGG 59.453 55.000 6.32 0.00 39.42 5.73
5982 6145 1.486726 AGAAAGCTATGGAAGACCGGG 59.513 52.381 6.32 0.00 39.42 5.73
5983 6146 2.168521 TCAGAAAGCTATGGAAGACCGG 59.831 50.000 0.00 0.00 39.42 5.28
5984 6147 3.526931 TCAGAAAGCTATGGAAGACCG 57.473 47.619 0.00 0.00 39.42 4.79
5985 6148 7.770897 TCTTTTATCAGAAAGCTATGGAAGACC 59.229 37.037 0.00 0.00 36.73 3.85
5986 6149 8.723942 TCTTTTATCAGAAAGCTATGGAAGAC 57.276 34.615 0.00 0.00 36.73 3.01
5987 6150 9.911788 ATTCTTTTATCAGAAAGCTATGGAAGA 57.088 29.630 0.00 0.00 36.36 2.87
5989 6152 8.830580 CGATTCTTTTATCAGAAAGCTATGGAA 58.169 33.333 0.00 0.00 36.36 3.53
5990 6153 8.204160 TCGATTCTTTTATCAGAAAGCTATGGA 58.796 33.333 0.00 0.00 36.36 3.41
5991 6154 8.370493 TCGATTCTTTTATCAGAAAGCTATGG 57.630 34.615 0.00 0.00 36.36 2.74
6050 6213 3.854286 GTGACTCTCGCGAAAGAAAAA 57.146 42.857 17.91 0.00 0.00 1.94
6060 6223 1.499049 AGAAAAACCGTGACTCTCGC 58.501 50.000 0.00 0.00 0.00 5.03
6061 6224 2.475487 GGAAGAAAAACCGTGACTCTCG 59.525 50.000 0.00 0.00 0.00 4.04
6062 6225 2.475487 CGGAAGAAAAACCGTGACTCTC 59.525 50.000 0.00 0.00 43.53 3.20
6063 6226 2.480845 CGGAAGAAAAACCGTGACTCT 58.519 47.619 0.00 0.00 43.53 3.24
6064 6227 2.943843 CGGAAGAAAAACCGTGACTC 57.056 50.000 0.00 0.00 43.53 3.36
6065 6228 6.163923 TTTTGCGGAAGAAAAACCGTGACT 62.164 41.667 0.00 0.00 43.49 3.41
6066 6229 3.975307 TTTTGCGGAAGAAAAACCGTGAC 60.975 43.478 0.00 0.00 43.49 3.67
6067 6230 2.163815 TTTTGCGGAAGAAAAACCGTGA 59.836 40.909 0.00 0.00 43.49 4.35
6068 6231 2.531206 TTTTGCGGAAGAAAAACCGTG 58.469 42.857 0.00 0.00 43.49 4.94
6069 6232 2.480587 CCTTTTGCGGAAGAAAAACCGT 60.481 45.455 0.00 0.00 43.49 4.83
6070 6233 2.124122 CCTTTTGCGGAAGAAAAACCG 58.876 47.619 0.00 0.00 43.49 4.44
6071 6234 1.864711 GCCTTTTGCGGAAGAAAAACC 59.135 47.619 0.82 0.00 43.49 3.27
6072 6235 2.284150 GTGCCTTTTGCGGAAGAAAAAC 59.716 45.455 0.82 0.00 43.49 2.43
6073 6236 2.545731 GTGCCTTTTGCGGAAGAAAAA 58.454 42.857 0.82 0.00 46.06 1.94
6074 6237 1.535015 CGTGCCTTTTGCGGAAGAAAA 60.535 47.619 0.82 0.00 45.60 2.29
6075 6238 0.030101 CGTGCCTTTTGCGGAAGAAA 59.970 50.000 0.82 0.00 45.60 2.52
6076 6239 1.652012 CGTGCCTTTTGCGGAAGAA 59.348 52.632 0.82 0.00 45.60 2.52
6077 6240 3.339731 CGTGCCTTTTGCGGAAGA 58.660 55.556 0.82 0.00 45.60 2.87
6082 6245 1.943693 CACAACCGTGCCTTTTGCG 60.944 57.895 0.00 0.00 45.60 4.85
6083 6246 4.011046 CACAACCGTGCCTTTTGC 57.989 55.556 0.00 0.00 36.06 3.68
6091 6254 0.584396 TCGCTAAAAGCACAACCGTG 59.416 50.000 0.00 0.00 42.58 4.94
6092 6255 0.865769 CTCGCTAAAAGCACAACCGT 59.134 50.000 0.00 0.00 42.58 4.83
6093 6256 1.126846 CTCTCGCTAAAAGCACAACCG 59.873 52.381 0.00 0.00 42.58 4.44
6094 6257 2.143925 ACTCTCGCTAAAAGCACAACC 58.856 47.619 0.00 0.00 42.58 3.77
6095 6258 2.800544 TGACTCTCGCTAAAAGCACAAC 59.199 45.455 0.00 0.00 42.58 3.32
6096 6259 2.800544 GTGACTCTCGCTAAAAGCACAA 59.199 45.455 0.00 0.00 42.58 3.33
6097 6260 2.404215 GTGACTCTCGCTAAAAGCACA 58.596 47.619 0.00 0.00 42.58 4.57
6098 6261 1.387084 CGTGACTCTCGCTAAAAGCAC 59.613 52.381 0.00 0.00 42.58 4.40
6099 6262 1.668919 CCGTGACTCTCGCTAAAAGCA 60.669 52.381 0.00 0.00 42.58 3.91
6100 6263 0.992802 CCGTGACTCTCGCTAAAAGC 59.007 55.000 0.00 0.00 38.02 3.51
6101 6264 0.992802 GCCGTGACTCTCGCTAAAAG 59.007 55.000 0.00 0.00 0.00 2.27
6102 6265 0.389426 GGCCGTGACTCTCGCTAAAA 60.389 55.000 0.00 0.00 0.00 1.52
6103 6266 1.214589 GGCCGTGACTCTCGCTAAA 59.785 57.895 0.00 0.00 0.00 1.85
6104 6267 2.882876 GGCCGTGACTCTCGCTAA 59.117 61.111 0.00 0.00 0.00 3.09
6105 6268 3.506096 CGGCCGTGACTCTCGCTA 61.506 66.667 19.50 0.00 0.00 4.26
6119 6282 4.221873 GTTTTCGAAAGGCACGGC 57.778 55.556 10.98 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.