Multiple sequence alignment - TraesCS1D01G352600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G352600 chr1D 100.000 4439 0 0 1 4439 438230259 438225821 0.000000e+00 8198.0
1 TraesCS1D01G352600 chr1D 90.178 1069 82 14 2953 4005 438185301 438184240 0.000000e+00 1371.0
2 TraesCS1D01G352600 chr1D 84.962 911 86 23 3260 4129 438204699 438203799 0.000000e+00 876.0
3 TraesCS1D01G352600 chr1D 84.528 265 33 6 2908 3170 438204992 438204734 5.700000e-64 255.0
4 TraesCS1D01G352600 chr1A 93.717 2817 139 11 1647 4439 534933024 534930222 0.000000e+00 4187.0
5 TraesCS1D01G352600 chr1A 89.621 819 62 18 840 1643 534933881 534933071 0.000000e+00 1020.0
6 TraesCS1D01G352600 chr1A 85.298 755 64 15 3252 4005 534896198 534895490 0.000000e+00 736.0
7 TraesCS1D01G352600 chr1A 85.298 755 64 14 3252 4005 534915288 534914580 0.000000e+00 736.0
8 TraesCS1D01G352600 chr1A 85.166 755 65 15 3252 4005 534877312 534876604 0.000000e+00 730.0
9 TraesCS1D01G352600 chr1A 85.201 723 60 14 3252 3973 534919600 534918924 0.000000e+00 699.0
10 TraesCS1D01G352600 chr1A 86.378 323 24 7 18 338 534934624 534934320 7.110000e-88 335.0
11 TraesCS1D01G352600 chr1A 84.940 166 23 2 2178 2342 534613969 534613805 2.750000e-37 167.0
12 TraesCS1D01G352600 chr1A 84.828 145 13 3 336 480 534934071 534933936 2.150000e-28 137.0
13 TraesCS1D01G352600 chr1B 90.653 2236 154 15 1644 3861 593837383 593835185 0.000000e+00 2920.0
14 TraesCS1D01G352600 chr1B 90.000 800 47 15 854 1624 593838250 593837455 0.000000e+00 1003.0
15 TraesCS1D01G352600 chr1B 89.313 524 39 6 18 531 593838802 593838286 3.740000e-180 641.0
16 TraesCS1D01G352600 chr1B 84.882 635 54 16 3545 4149 593831200 593830578 1.770000e-168 603.0
17 TraesCS1D01G352600 chr1B 96.296 108 4 0 4013 4120 593835074 593834967 1.270000e-40 178.0
18 TraesCS1D01G352600 chrUn 85.430 755 63 15 3252 4005 324198164 324197456 0.000000e+00 741.0
19 TraesCS1D01G352600 chrUn 85.166 755 65 15 3252 4005 387177965 387178673 0.000000e+00 730.0
20 TraesCS1D01G352600 chrUn 85.201 723 60 15 3252 3973 308680666 308679990 0.000000e+00 699.0
21 TraesCS1D01G352600 chrUn 86.301 292 31 6 3252 3542 357242728 357242445 4.310000e-80 309.0
22 TraesCS1D01G352600 chr3B 90.492 305 28 1 531 834 191186853 191186549 6.920000e-108 401.0
23 TraesCS1D01G352600 chr3B 90.461 304 27 2 533 834 449806546 449806849 2.490000e-107 399.0
24 TraesCS1D01G352600 chr3B 90.164 305 28 2 532 834 63472862 63472558 3.220000e-106 396.0
25 TraesCS1D01G352600 chr3B 72.951 366 73 17 1479 1832 507301485 507301134 2.180000e-18 104.0
26 TraesCS1D01G352600 chr2D 90.461 304 29 0 531 834 618294474 618294777 6.920000e-108 401.0
27 TraesCS1D01G352600 chr2D 90.164 305 28 2 532 835 649373827 649373524 3.220000e-106 396.0
28 TraesCS1D01G352600 chr2A 90.492 305 27 2 532 834 434580264 434579960 6.920000e-108 401.0
29 TraesCS1D01G352600 chr2A 81.600 125 21 1 4279 4403 104877013 104877135 7.860000e-18 102.0
30 TraesCS1D01G352600 chr5D 90.429 303 29 0 532 834 521864290 521863988 2.490000e-107 399.0
31 TraesCS1D01G352600 chr5D 80.247 162 29 2 4279 4439 80453386 80453227 7.800000e-23 119.0
32 TraesCS1D01G352600 chr5D 89.157 83 9 0 4315 4397 130667791 130667873 2.180000e-18 104.0
33 TraesCS1D01G352600 chr3D 89.902 307 29 2 530 834 9253674 9253368 1.160000e-105 394.0
34 TraesCS1D01G352600 chr3D 85.185 108 16 0 1506 1613 390076030 390075923 1.310000e-20 111.0
35 TraesCS1D01G352600 chr3D 83.471 121 17 2 4296 4415 548540070 548539952 4.690000e-20 110.0
36 TraesCS1D01G352600 chr5A 89.677 310 29 3 527 834 64980818 64980510 4.160000e-105 392.0
37 TraesCS1D01G352600 chr5A 82.979 141 22 1 4299 4439 368557954 368557816 4.660000e-25 126.0
38 TraesCS1D01G352600 chr3A 82.222 135 24 0 1479 1613 510691049 510690915 2.810000e-22 117.0
39 TraesCS1D01G352600 chr5B 84.071 113 16 1 4299 4411 577220394 577220284 1.690000e-19 108.0
40 TraesCS1D01G352600 chr4B 83.654 104 15 1 4289 4392 163801788 163801687 3.650000e-16 97.1
41 TraesCS1D01G352600 chr4D 84.000 100 14 1 4293 4392 132954032 132954129 1.310000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G352600 chr1D 438225821 438230259 4438 True 8198.00 8198 100.0000 1 4439 1 chr1D.!!$R2 4438
1 TraesCS1D01G352600 chr1D 438184240 438185301 1061 True 1371.00 1371 90.1780 2953 4005 1 chr1D.!!$R1 1052
2 TraesCS1D01G352600 chr1D 438203799 438204992 1193 True 565.50 876 84.7450 2908 4129 2 chr1D.!!$R3 1221
3 TraesCS1D01G352600 chr1A 534930222 534934624 4402 True 1419.75 4187 88.6360 18 4439 4 chr1A.!!$R5 4421
4 TraesCS1D01G352600 chr1A 534895490 534896198 708 True 736.00 736 85.2980 3252 4005 1 chr1A.!!$R3 753
5 TraesCS1D01G352600 chr1A 534876604 534877312 708 True 730.00 730 85.1660 3252 4005 1 chr1A.!!$R2 753
6 TraesCS1D01G352600 chr1A 534914580 534919600 5020 True 717.50 736 85.2495 3252 4005 2 chr1A.!!$R4 753
7 TraesCS1D01G352600 chr1B 593830578 593838802 8224 True 1069.00 2920 90.2288 18 4149 5 chr1B.!!$R1 4131
8 TraesCS1D01G352600 chrUn 324197456 324198164 708 True 741.00 741 85.4300 3252 4005 1 chrUn.!!$R2 753
9 TraesCS1D01G352600 chrUn 387177965 387178673 708 False 730.00 730 85.1660 3252 4005 1 chrUn.!!$F1 753
10 TraesCS1D01G352600 chrUn 308679990 308680666 676 True 699.00 699 85.2010 3252 3973 1 chrUn.!!$R1 721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
664 917 0.035056 CACATTCAGTGGGAGGGGAC 60.035 60.0 0.00 0.00 44.69 4.46 F
693 946 0.098376 GACGACGAGGTGCTTACGAT 59.902 55.0 0.00 0.00 0.00 3.73 F
805 1058 0.229753 GTATGCGCGTGTACATGAGC 59.770 55.0 29.98 29.98 42.34 4.26 F
2583 2967 0.776810 TGCTGGGATGGGAGTTTCAA 59.223 50.0 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1471 1760 0.034767 CATCTGGCATCTGGTGGTGT 60.035 55.000 0.00 0.0 0.0 4.16 R
2541 2925 0.324645 ATTAGCCCAACCTGCCCAAG 60.325 55.000 0.00 0.0 0.0 3.61 R
2605 2989 1.133253 CACACGAATGAAGCGGCTG 59.867 57.895 1.81 0.0 0.0 4.85 R
3913 12991 2.480419 CGGATGAAACAGAGTTCCACAC 59.520 50.000 0.00 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 9.712305 TTCTTCTTTGAGTGGAAATAGTAGAAG 57.288 33.333 0.00 0.00 38.13 2.85
104 105 4.122046 CCATGCTATCTTGACGATGTTCA 58.878 43.478 0.00 0.00 33.48 3.18
149 151 5.926542 GCACATATGGTCATATCGTGTTACT 59.073 40.000 20.76 0.00 36.42 2.24
186 188 1.582610 CCCCGTGTCAAATTGGGACG 61.583 60.000 9.64 9.64 44.88 4.79
231 233 3.866515 TCTCCTTCCCTTTTCCTCCTA 57.133 47.619 0.00 0.00 0.00 2.94
264 266 5.179182 CACAAAGTTTCACCCCAAAATATGC 59.821 40.000 0.00 0.00 0.00 3.14
290 292 5.295540 TGTTCCAAAGCTTTACCATTTTTGC 59.704 36.000 12.25 0.00 0.00 3.68
291 293 4.054671 TCCAAAGCTTTACCATTTTTGCG 58.945 39.130 12.25 0.00 0.00 4.85
329 331 2.884639 ACAAGCTCATGTAACACCCAAC 59.115 45.455 0.00 0.00 0.00 3.77
339 592 4.901868 TGTAACACCCAACAAGATCTACC 58.098 43.478 0.00 0.00 0.00 3.18
346 599 3.947834 CCCAACAAGATCTACCAACATCC 59.052 47.826 0.00 0.00 0.00 3.51
366 619 6.667414 ACATCCAGATAGAGATCCTATGGAAC 59.333 42.308 13.25 0.00 39.01 3.62
517 770 4.215908 TCAATCGGAAGTAGGCACTAGAT 58.784 43.478 0.00 0.00 44.14 1.98
520 773 4.434545 TCGGAAGTAGGCACTAGATACT 57.565 45.455 0.00 0.00 44.14 2.12
531 784 7.296628 AGGCACTAGATACTAAAAGGATGAG 57.703 40.000 0.00 0.00 36.02 2.90
532 785 5.929415 GGCACTAGATACTAAAAGGATGAGC 59.071 44.000 0.00 0.00 0.00 4.26
533 786 5.631512 GCACTAGATACTAAAAGGATGAGCG 59.368 44.000 0.00 0.00 0.00 5.03
534 787 6.515200 GCACTAGATACTAAAAGGATGAGCGA 60.515 42.308 0.00 0.00 0.00 4.93
536 789 8.085296 CACTAGATACTAAAAGGATGAGCGAAT 58.915 37.037 0.00 0.00 0.00 3.34
537 790 8.643324 ACTAGATACTAAAAGGATGAGCGAATT 58.357 33.333 0.00 0.00 0.00 2.17
540 793 9.262358 AGATACTAAAAGGATGAGCGAATTAAC 57.738 33.333 0.00 0.00 0.00 2.01
542 795 6.415573 ACTAAAAGGATGAGCGAATTAACCT 58.584 36.000 0.00 0.00 0.00 3.50
543 796 5.567138 AAAAGGATGAGCGAATTAACCTG 57.433 39.130 0.00 0.00 0.00 4.00
544 797 3.914426 AGGATGAGCGAATTAACCTGT 57.086 42.857 0.00 0.00 0.00 4.00
545 798 3.535561 AGGATGAGCGAATTAACCTGTG 58.464 45.455 0.00 0.00 0.00 3.66
548 801 4.156008 GGATGAGCGAATTAACCTGTGTTT 59.844 41.667 0.00 0.00 35.87 2.83
549 802 4.481930 TGAGCGAATTAACCTGTGTTTG 57.518 40.909 0.00 0.00 35.87 2.93
551 804 3.482436 AGCGAATTAACCTGTGTTTGGA 58.518 40.909 0.00 0.00 35.87 3.53
552 805 4.079253 AGCGAATTAACCTGTGTTTGGAT 58.921 39.130 0.00 0.00 35.87 3.41
553 806 4.082787 AGCGAATTAACCTGTGTTTGGATG 60.083 41.667 0.00 0.00 35.87 3.51
554 807 4.732784 CGAATTAACCTGTGTTTGGATGG 58.267 43.478 0.00 0.00 35.87 3.51
555 808 4.217550 CGAATTAACCTGTGTTTGGATGGT 59.782 41.667 0.00 0.00 35.87 3.55
556 809 5.278758 CGAATTAACCTGTGTTTGGATGGTT 60.279 40.000 0.00 0.00 42.72 3.67
557 810 6.072397 CGAATTAACCTGTGTTTGGATGGTTA 60.072 38.462 0.00 0.00 40.84 2.85
558 811 6.834168 ATTAACCTGTGTTTGGATGGTTAG 57.166 37.500 0.00 0.00 42.07 2.34
559 812 4.447138 AACCTGTGTTTGGATGGTTAGA 57.553 40.909 0.00 0.00 38.99 2.10
560 813 4.021102 ACCTGTGTTTGGATGGTTAGAG 57.979 45.455 0.00 0.00 0.00 2.43
561 814 3.244911 ACCTGTGTTTGGATGGTTAGAGG 60.245 47.826 0.00 0.00 0.00 3.69
562 815 3.347216 CTGTGTTTGGATGGTTAGAGGG 58.653 50.000 0.00 0.00 0.00 4.30
563 816 2.983192 TGTGTTTGGATGGTTAGAGGGA 59.017 45.455 0.00 0.00 0.00 4.20
564 817 3.244770 TGTGTTTGGATGGTTAGAGGGAC 60.245 47.826 0.00 0.00 0.00 4.46
565 818 2.307686 TGTTTGGATGGTTAGAGGGACC 59.692 50.000 0.00 0.00 37.69 4.46
566 819 1.200519 TTGGATGGTTAGAGGGACCG 58.799 55.000 0.00 0.00 40.13 4.79
567 820 0.042131 TGGATGGTTAGAGGGACCGT 59.958 55.000 0.00 0.00 40.13 4.83
568 821 0.464452 GGATGGTTAGAGGGACCGTG 59.536 60.000 0.00 0.00 40.13 4.94
569 822 0.464452 GATGGTTAGAGGGACCGTGG 59.536 60.000 0.00 0.00 40.13 4.94
570 823 0.252558 ATGGTTAGAGGGACCGTGGT 60.253 55.000 0.00 0.00 40.13 4.16
571 824 0.409092 TGGTTAGAGGGACCGTGGTA 59.591 55.000 0.00 0.00 40.13 3.25
572 825 1.007479 TGGTTAGAGGGACCGTGGTAT 59.993 52.381 0.00 0.00 40.13 2.73
573 826 1.685517 GGTTAGAGGGACCGTGGTATC 59.314 57.143 0.00 0.00 0.00 2.24
574 827 1.685517 GTTAGAGGGACCGTGGTATCC 59.314 57.143 0.00 0.00 0.00 2.59
578 831 3.227250 GGACCGTGGTATCCCCAG 58.773 66.667 0.00 0.00 46.45 4.45
579 832 2.504519 GACCGTGGTATCCCCAGC 59.495 66.667 0.00 0.00 46.45 4.85
580 833 3.087906 ACCGTGGTATCCCCAGCC 61.088 66.667 0.00 0.00 46.45 4.85
581 834 3.873812 CCGTGGTATCCCCAGCCC 61.874 72.222 0.00 0.00 46.45 5.19
582 835 3.087253 CGTGGTATCCCCAGCCCA 61.087 66.667 0.00 0.00 46.45 5.36
583 836 2.452064 CGTGGTATCCCCAGCCCAT 61.452 63.158 0.00 0.00 46.45 4.00
584 837 1.456287 GTGGTATCCCCAGCCCATC 59.544 63.158 0.00 0.00 46.45 3.51
585 838 1.005423 TGGTATCCCCAGCCCATCA 59.995 57.895 0.00 0.00 38.72 3.07
586 839 1.061905 TGGTATCCCCAGCCCATCAG 61.062 60.000 0.00 0.00 38.72 2.90
587 840 1.763770 GTATCCCCAGCCCATCAGG 59.236 63.158 0.00 0.00 39.47 3.86
605 858 3.010200 AGGGTTCAAATCCTGATGCTC 57.990 47.619 0.00 0.00 38.36 4.26
606 859 1.672881 GGGTTCAAATCCTGATGCTCG 59.327 52.381 0.00 0.00 32.78 5.03
607 860 1.064654 GGTTCAAATCCTGATGCTCGC 59.935 52.381 0.00 0.00 32.78 5.03
608 861 1.739466 GTTCAAATCCTGATGCTCGCA 59.261 47.619 0.00 0.00 32.78 5.10
609 862 2.336945 TCAAATCCTGATGCTCGCAT 57.663 45.000 3.70 3.70 39.69 4.73
610 863 2.646930 TCAAATCCTGATGCTCGCATT 58.353 42.857 5.79 0.00 36.70 3.56
611 864 3.018856 TCAAATCCTGATGCTCGCATTT 58.981 40.909 5.79 0.00 36.70 2.32
612 865 4.198530 TCAAATCCTGATGCTCGCATTTA 58.801 39.130 5.79 0.00 36.70 1.40
613 866 4.823442 TCAAATCCTGATGCTCGCATTTAT 59.177 37.500 5.79 0.00 36.70 1.40
614 867 5.300034 TCAAATCCTGATGCTCGCATTTATT 59.700 36.000 5.79 1.98 36.70 1.40
615 868 5.779529 AATCCTGATGCTCGCATTTATTT 57.220 34.783 5.79 0.00 36.70 1.40
616 869 4.818534 TCCTGATGCTCGCATTTATTTC 57.181 40.909 5.79 0.00 36.70 2.17
617 870 4.454678 TCCTGATGCTCGCATTTATTTCT 58.545 39.130 5.79 0.00 36.70 2.52
618 871 4.274214 TCCTGATGCTCGCATTTATTTCTG 59.726 41.667 5.79 0.00 36.70 3.02
619 872 4.534168 CTGATGCTCGCATTTATTTCTGG 58.466 43.478 5.79 0.00 36.70 3.86
620 873 4.198530 TGATGCTCGCATTTATTTCTGGA 58.801 39.130 5.79 0.00 36.70 3.86
621 874 4.823442 TGATGCTCGCATTTATTTCTGGAT 59.177 37.500 5.79 0.00 36.70 3.41
622 875 5.300034 TGATGCTCGCATTTATTTCTGGATT 59.700 36.000 5.79 0.00 36.70 3.01
623 876 5.581126 TGCTCGCATTTATTTCTGGATTT 57.419 34.783 0.00 0.00 0.00 2.17
624 877 6.691754 TGCTCGCATTTATTTCTGGATTTA 57.308 33.333 0.00 0.00 0.00 1.40
625 878 7.275888 TGCTCGCATTTATTTCTGGATTTAT 57.724 32.000 0.00 0.00 0.00 1.40
626 879 7.715657 TGCTCGCATTTATTTCTGGATTTATT 58.284 30.769 0.00 0.00 0.00 1.40
627 880 8.196771 TGCTCGCATTTATTTCTGGATTTATTT 58.803 29.630 0.00 0.00 0.00 1.40
628 881 8.694394 GCTCGCATTTATTTCTGGATTTATTTC 58.306 33.333 0.00 0.00 0.00 2.17
629 882 9.734620 CTCGCATTTATTTCTGGATTTATTTCA 57.265 29.630 0.00 0.00 0.00 2.69
630 883 9.734620 TCGCATTTATTTCTGGATTTATTTCAG 57.265 29.630 0.00 0.00 0.00 3.02
631 884 8.971321 CGCATTTATTTCTGGATTTATTTCAGG 58.029 33.333 0.00 0.00 0.00 3.86
638 891 9.807649 ATTTCTGGATTTATTTCAGGATTTTCG 57.192 29.630 0.00 0.00 0.00 3.46
639 892 7.333528 TCTGGATTTATTTCAGGATTTTCGG 57.666 36.000 0.00 0.00 0.00 4.30
640 893 5.901552 TGGATTTATTTCAGGATTTTCGGC 58.098 37.500 0.00 0.00 0.00 5.54
641 894 4.976116 GGATTTATTTCAGGATTTTCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
642 895 5.220970 GGATTTATTTCAGGATTTTCGGCGA 60.221 40.000 4.99 4.99 0.00 5.54
643 896 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
644 897 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
645 898 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
646 899 0.392327 TCAGGATTTTCGGCGATGCA 60.392 50.000 11.76 0.00 0.00 3.96
647 900 0.248215 CAGGATTTTCGGCGATGCAC 60.248 55.000 11.76 3.20 0.00 4.57
648 901 0.676466 AGGATTTTCGGCGATGCACA 60.676 50.000 11.76 0.00 0.00 4.57
649 902 0.381801 GGATTTTCGGCGATGCACAT 59.618 50.000 11.76 0.00 0.00 3.21
650 903 1.202290 GGATTTTCGGCGATGCACATT 60.202 47.619 11.76 0.00 0.00 2.71
651 904 2.111756 GATTTTCGGCGATGCACATTC 58.888 47.619 11.76 0.00 0.00 2.67
652 905 0.877743 TTTTCGGCGATGCACATTCA 59.122 45.000 11.76 0.00 0.00 2.57
653 906 0.447406 TTTCGGCGATGCACATTCAG 59.553 50.000 11.76 0.00 0.00 3.02
654 907 0.673333 TTCGGCGATGCACATTCAGT 60.673 50.000 11.76 0.00 0.00 3.41
663 916 2.386864 CACATTCAGTGGGAGGGGA 58.613 57.895 0.00 0.00 44.69 4.81
664 917 0.035056 CACATTCAGTGGGAGGGGAC 60.035 60.000 0.00 0.00 44.69 4.46
665 918 1.221840 CATTCAGTGGGAGGGGACG 59.778 63.158 0.00 0.00 0.00 4.79
666 919 1.229529 ATTCAGTGGGAGGGGACGT 60.230 57.895 0.00 0.00 0.00 4.34
667 920 0.840722 ATTCAGTGGGAGGGGACGTT 60.841 55.000 0.00 0.00 0.00 3.99
668 921 1.057851 TTCAGTGGGAGGGGACGTTT 61.058 55.000 0.00 0.00 0.00 3.60
669 922 1.003718 CAGTGGGAGGGGACGTTTC 60.004 63.158 0.00 0.00 0.00 2.78
670 923 2.222013 AGTGGGAGGGGACGTTTCC 61.222 63.158 0.00 0.00 41.95 3.13
671 924 3.315949 TGGGAGGGGACGTTTCCG 61.316 66.667 0.00 0.00 43.94 4.30
689 942 3.970721 TCGACGACGAGGTGCTTA 58.029 55.556 5.75 0.00 43.81 3.09
690 943 1.499056 TCGACGACGAGGTGCTTAC 59.501 57.895 5.75 0.00 43.81 2.34
691 944 1.862147 CGACGACGAGGTGCTTACG 60.862 63.158 0.00 0.00 42.66 3.18
692 945 1.499056 GACGACGAGGTGCTTACGA 59.501 57.895 0.00 0.00 0.00 3.43
693 946 0.098376 GACGACGAGGTGCTTACGAT 59.902 55.000 0.00 0.00 0.00 3.73
694 947 0.524862 ACGACGAGGTGCTTACGATT 59.475 50.000 0.00 0.00 0.00 3.34
695 948 1.739466 ACGACGAGGTGCTTACGATTA 59.261 47.619 0.00 0.00 0.00 1.75
696 949 2.107178 CGACGAGGTGCTTACGATTAC 58.893 52.381 0.00 0.00 0.00 1.89
697 950 2.223203 CGACGAGGTGCTTACGATTACT 60.223 50.000 0.00 0.00 0.00 2.24
698 951 3.730061 CGACGAGGTGCTTACGATTACTT 60.730 47.826 0.00 0.00 0.00 2.24
699 952 3.767278 ACGAGGTGCTTACGATTACTTC 58.233 45.455 0.00 0.00 0.00 3.01
721 974 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
722 975 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
723 976 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
724 977 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
725 978 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
726 979 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
727 980 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
728 981 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
729 982 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
730 983 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
731 984 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
732 985 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
733 986 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
734 987 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
735 988 0.901827 TATGCCGGCTCAGTCTTTCA 59.098 50.000 29.70 2.45 0.00 2.69
736 989 0.392193 ATGCCGGCTCAGTCTTTCAG 60.392 55.000 29.70 0.00 0.00 3.02
737 990 1.293498 GCCGGCTCAGTCTTTCAGA 59.707 57.895 22.15 0.00 0.00 3.27
738 991 1.016653 GCCGGCTCAGTCTTTCAGAC 61.017 60.000 22.15 0.00 45.38 3.51
751 1004 5.900425 GTCTTTCAGACATGCTCATAGAGA 58.100 41.667 0.00 0.00 44.45 3.10
752 1005 6.514947 GTCTTTCAGACATGCTCATAGAGAT 58.485 40.000 0.00 0.00 44.45 2.75
753 1006 7.656412 GTCTTTCAGACATGCTCATAGAGATA 58.344 38.462 0.00 0.00 44.45 1.98
754 1007 7.809331 GTCTTTCAGACATGCTCATAGAGATAG 59.191 40.741 0.00 0.00 44.45 2.08
755 1008 6.587206 TTCAGACATGCTCATAGAGATAGG 57.413 41.667 0.00 0.00 0.00 2.57
756 1009 5.015515 TCAGACATGCTCATAGAGATAGGG 58.984 45.833 0.00 0.00 0.00 3.53
757 1010 4.771577 CAGACATGCTCATAGAGATAGGGT 59.228 45.833 0.00 0.00 0.00 4.34
758 1011 5.948758 CAGACATGCTCATAGAGATAGGGTA 59.051 44.000 0.00 0.00 0.00 3.69
759 1012 6.606796 CAGACATGCTCATAGAGATAGGGTAT 59.393 42.308 0.00 0.00 0.00 2.73
760 1013 6.606796 AGACATGCTCATAGAGATAGGGTATG 59.393 42.308 0.00 0.00 0.00 2.39
761 1014 5.128499 ACATGCTCATAGAGATAGGGTATGC 59.872 44.000 0.00 0.00 0.00 3.14
762 1015 4.940483 TGCTCATAGAGATAGGGTATGCT 58.060 43.478 0.00 0.00 0.00 3.79
763 1016 5.336945 TGCTCATAGAGATAGGGTATGCTT 58.663 41.667 0.00 0.00 0.00 3.91
764 1017 6.494059 TGCTCATAGAGATAGGGTATGCTTA 58.506 40.000 0.00 0.00 0.00 3.09
765 1018 7.128751 TGCTCATAGAGATAGGGTATGCTTAT 58.871 38.462 0.00 0.00 0.00 1.73
766 1019 7.069208 TGCTCATAGAGATAGGGTATGCTTATG 59.931 40.741 0.00 0.00 0.00 1.90
767 1020 7.069331 GCTCATAGAGATAGGGTATGCTTATGT 59.931 40.741 0.00 0.00 0.00 2.29
768 1021 8.298729 TCATAGAGATAGGGTATGCTTATGTG 57.701 38.462 0.00 0.00 0.00 3.21
769 1022 5.413309 AGAGATAGGGTATGCTTATGTGC 57.587 43.478 0.00 0.00 0.00 4.57
770 1023 4.081972 AGAGATAGGGTATGCTTATGTGCG 60.082 45.833 0.00 0.00 35.36 5.34
771 1024 3.578716 AGATAGGGTATGCTTATGTGCGT 59.421 43.478 0.00 0.00 35.36 5.24
772 1025 2.710096 AGGGTATGCTTATGTGCGTT 57.290 45.000 0.00 0.00 35.36 4.84
773 1026 2.561569 AGGGTATGCTTATGTGCGTTC 58.438 47.619 0.00 0.00 35.36 3.95
774 1027 2.093181 AGGGTATGCTTATGTGCGTTCA 60.093 45.455 0.00 0.00 35.36 3.18
775 1028 2.878406 GGGTATGCTTATGTGCGTTCAT 59.122 45.455 0.00 0.87 35.36 2.57
776 1029 4.062293 GGGTATGCTTATGTGCGTTCATA 58.938 43.478 0.00 0.00 35.36 2.15
777 1030 4.152402 GGGTATGCTTATGTGCGTTCATAG 59.848 45.833 0.00 0.00 32.85 2.23
778 1031 4.152402 GGTATGCTTATGTGCGTTCATAGG 59.848 45.833 6.70 6.70 32.85 2.57
779 1032 2.560504 TGCTTATGTGCGTTCATAGGG 58.439 47.619 10.87 6.52 32.85 3.53
780 1033 2.169561 TGCTTATGTGCGTTCATAGGGA 59.830 45.455 10.87 7.03 32.85 4.20
781 1034 3.181455 TGCTTATGTGCGTTCATAGGGAT 60.181 43.478 10.87 0.00 32.85 3.85
782 1035 3.187227 GCTTATGTGCGTTCATAGGGATG 59.813 47.826 10.87 0.00 32.85 3.51
783 1036 4.631131 CTTATGTGCGTTCATAGGGATGA 58.369 43.478 0.00 0.00 40.45 2.92
784 1037 2.602257 TGTGCGTTCATAGGGATGAG 57.398 50.000 0.00 0.00 43.03 2.90
785 1038 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
786 1039 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
787 1040 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
788 1041 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
789 1042 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
790 1043 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
791 1044 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
792 1045 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
793 1046 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
794 1047 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
795 1048 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
796 1049 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
797 1050 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
798 1051 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
799 1052 1.517276 GATGAGTGTATGCGCGTGTAC 59.483 52.381 13.61 11.02 0.00 2.90
800 1053 0.241481 TGAGTGTATGCGCGTGTACA 59.759 50.000 13.61 17.65 0.00 2.90
801 1054 1.135228 TGAGTGTATGCGCGTGTACAT 60.135 47.619 22.16 13.68 33.78 2.29
802 1055 1.255342 GAGTGTATGCGCGTGTACATG 59.745 52.381 22.16 10.89 33.78 3.21
803 1056 1.135228 AGTGTATGCGCGTGTACATGA 60.135 47.619 19.38 0.00 33.78 3.07
804 1057 1.255342 GTGTATGCGCGTGTACATGAG 59.745 52.381 19.38 16.49 33.78 2.90
805 1058 0.229753 GTATGCGCGTGTACATGAGC 59.770 55.000 29.98 29.98 42.34 4.26
808 1061 2.880879 CGCGTGTACATGAGCGCT 60.881 61.111 23.08 11.27 46.56 5.92
809 1062 2.444624 CGCGTGTACATGAGCGCTT 61.445 57.895 23.08 0.00 46.56 4.68
810 1063 1.059369 GCGTGTACATGAGCGCTTG 59.941 57.895 19.38 9.93 45.48 4.01
811 1064 1.059369 CGTGTACATGAGCGCTTGC 59.941 57.895 13.26 0.00 39.58 4.01
812 1065 1.059369 GTGTACATGAGCGCTTGCG 59.941 57.895 13.26 10.90 45.69 4.85
813 1066 1.374125 TGTACATGAGCGCTTGCGT 60.374 52.632 13.26 11.64 45.69 5.24
814 1067 1.345176 GTACATGAGCGCTTGCGTC 59.655 57.895 13.26 12.36 45.69 5.19
815 1068 1.078759 GTACATGAGCGCTTGCGTCT 61.079 55.000 13.26 13.17 45.69 4.18
816 1069 1.078201 TACATGAGCGCTTGCGTCTG 61.078 55.000 13.26 5.84 45.69 3.51
817 1070 2.047844 ATGAGCGCTTGCGTCTGT 60.048 55.556 13.26 0.00 45.69 3.41
818 1071 1.078201 CATGAGCGCTTGCGTCTGTA 61.078 55.000 13.26 6.26 45.69 2.74
819 1072 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
820 1073 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
821 1074 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
822 1075 2.772189 CGCTTGCGTCTGTACTGC 59.228 61.111 6.86 0.00 0.00 4.40
823 1076 2.772189 GCTTGCGTCTGTACTGCG 59.228 61.111 10.57 10.57 0.00 5.18
824 1077 2.022129 GCTTGCGTCTGTACTGCGT 61.022 57.895 14.36 0.00 0.00 5.24
825 1078 1.557443 GCTTGCGTCTGTACTGCGTT 61.557 55.000 14.36 0.00 0.00 4.84
826 1079 1.693467 CTTGCGTCTGTACTGCGTTA 58.307 50.000 14.36 5.57 0.00 3.18
827 1080 2.055838 CTTGCGTCTGTACTGCGTTAA 58.944 47.619 14.36 10.57 0.00 2.01
828 1081 2.137129 TGCGTCTGTACTGCGTTAAA 57.863 45.000 14.36 1.60 0.00 1.52
829 1082 2.471818 TGCGTCTGTACTGCGTTAAAA 58.528 42.857 14.36 0.00 0.00 1.52
830 1083 2.864946 TGCGTCTGTACTGCGTTAAAAA 59.135 40.909 14.36 0.00 0.00 1.94
852 1105 0.953960 ACCCAAAAGGATCGTCGTGC 60.954 55.000 0.00 0.00 39.89 5.34
872 1132 2.413371 GCAAAAGAGCCTCTGTTAAGCG 60.413 50.000 0.00 0.00 0.00 4.68
942 1202 2.034685 GGCAAGAAAACCCAACTCTGTC 59.965 50.000 0.00 0.00 0.00 3.51
973 1240 3.437795 GTTCTCCGTCGCCTCCGA 61.438 66.667 0.00 0.00 42.01 4.55
974 1241 2.439701 TTCTCCGTCGCCTCCGAT 60.440 61.111 0.00 0.00 46.38 4.18
975 1242 2.050350 TTCTCCGTCGCCTCCGATT 61.050 57.895 0.00 0.00 46.38 3.34
1018 1285 2.923852 AATGGCTCCTCCTCTCCCCC 62.924 65.000 0.00 0.00 35.26 5.40
1042 1309 2.187946 CGCTGATCTCCACCACCC 59.812 66.667 0.00 0.00 0.00 4.61
1068 1335 3.964221 GACGCTCCGCATCGTGTCA 62.964 63.158 0.00 0.00 39.69 3.58
1081 1348 3.986006 TGTCACCGGTGCCGTCTC 61.986 66.667 30.25 14.56 37.81 3.36
1082 1349 3.681835 GTCACCGGTGCCGTCTCT 61.682 66.667 30.25 0.00 37.81 3.10
1222 1489 3.423154 CCGAAGCTGAACACGGGC 61.423 66.667 0.00 0.00 41.41 6.13
1288 1555 3.361724 CGTCGTAAGTGCTCTGAAACAAC 60.362 47.826 0.00 0.00 39.48 3.32
1295 1562 2.223377 GTGCTCTGAAACAACCCTTACG 59.777 50.000 0.00 0.00 0.00 3.18
1312 1579 5.354234 CCCTTACGAATTCTGCAAGTATGTT 59.646 40.000 3.52 0.00 33.76 2.71
1370 1637 7.066284 GCCTAATCTAAGAGCAAAGAAATGTCA 59.934 37.037 0.00 0.00 0.00 3.58
1388 1655 9.167311 GAAATGTCAGTTGGAACTCATATTACT 57.833 33.333 0.00 0.00 37.08 2.24
1447 1715 7.290857 TGCTATTTCTGAATAAGTCGTTGTC 57.709 36.000 0.00 0.00 0.00 3.18
1463 1739 3.005554 GTTGTCTGCTGCTGATATGTGT 58.994 45.455 12.42 0.00 0.00 3.72
1464 1740 2.624636 TGTCTGCTGCTGATATGTGTG 58.375 47.619 12.42 0.00 0.00 3.82
1465 1741 1.329906 GTCTGCTGCTGATATGTGTGC 59.670 52.381 12.42 0.00 0.00 4.57
1471 1760 3.374988 GCTGCTGATATGTGTGCTTGTTA 59.625 43.478 0.00 0.00 0.00 2.41
1516 1805 3.307975 CCTCAGAGGAAATCAAGAAGGCA 60.308 47.826 11.62 0.00 37.67 4.75
1632 1921 4.338964 GGTAGGAGCCTTCAGTACTAGTTC 59.661 50.000 0.00 0.00 0.00 3.01
1635 1924 3.764972 GGAGCCTTCAGTACTAGTTCTGT 59.235 47.826 23.82 8.85 33.89 3.41
1680 2064 3.315191 TGTTCACAAAGCTAACAAGAGGC 59.685 43.478 0.00 0.00 30.54 4.70
1800 2184 2.289257 TGACAGTGCAGTCAAGGATCAG 60.289 50.000 6.33 0.00 44.92 2.90
1821 2205 3.255149 AGGTGTTCGTCGATGAGTTTACT 59.745 43.478 7.51 1.79 0.00 2.24
1921 2305 6.408858 AGTCAGTGTATTTTATCTTGTGCG 57.591 37.500 0.00 0.00 0.00 5.34
2072 2456 3.627395 TGGTGAGTATACAAAGGCCAG 57.373 47.619 5.01 0.00 0.00 4.85
2091 2475 6.003950 GGCCAGCATAATATTTACTTGGAGA 58.996 40.000 0.00 0.00 0.00 3.71
2124 2508 7.043300 TGCCAATTATCCCCATCACTATATT 57.957 36.000 0.00 0.00 0.00 1.28
2138 2522 7.067372 CCATCACTATATTCAAGTCCTTGCAAA 59.933 37.037 0.00 0.00 40.24 3.68
2224 2608 7.594714 TGTTAAAGTTGTTGCACTGAACTTTA 58.405 30.769 21.74 21.74 44.30 1.85
2235 2619 5.935206 TGCACTGAACTTTATCGTATTTCCA 59.065 36.000 0.00 0.00 0.00 3.53
2267 2651 3.997021 CAGTTGACTGTATTCACTGGACC 59.003 47.826 2.98 0.00 39.09 4.46
2334 2718 5.422214 AGAAAGGGTCAATGTAAGACGAT 57.578 39.130 0.00 0.00 36.87 3.73
2350 2734 9.483916 TGTAAGACGATTTTCTTTCAGTCATAA 57.516 29.630 0.00 0.00 37.09 1.90
2446 2830 9.282247 GCAAAATGTGTATTATTCTCAGAACTG 57.718 33.333 0.00 0.00 0.00 3.16
2558 2942 1.214305 ATCTTGGGCAGGTTGGGCTA 61.214 55.000 0.00 0.00 0.00 3.93
2583 2967 0.776810 TGCTGGGATGGGAGTTTCAA 59.223 50.000 0.00 0.00 0.00 2.69
2588 2972 4.284178 CTGGGATGGGAGTTTCAATCAAT 58.716 43.478 0.00 0.00 0.00 2.57
2591 2975 4.142093 GGGATGGGAGTTTCAATCAATGTG 60.142 45.833 0.00 0.00 0.00 3.21
2605 2989 7.081349 TCAATCAATGTGTTTCGAATGGTAAC 58.919 34.615 0.00 0.00 0.00 2.50
2619 3003 0.373716 GGTAACAGCCGCTTCATTCG 59.626 55.000 0.00 0.00 0.00 3.34
2625 3009 1.132640 GCCGCTTCATTCGTGTGAC 59.867 57.895 0.00 0.00 0.00 3.67
2747 3131 3.804036 TCAGTTCTGTTCAAATCCACGT 58.196 40.909 0.00 0.00 0.00 4.49
2750 3134 4.509970 CAGTTCTGTTCAAATCCACGTGTA 59.490 41.667 15.65 0.00 0.00 2.90
2942 3337 7.380065 GTCATATATTCGACCAGAACTGAAGAC 59.620 40.741 3.19 0.00 42.39 3.01
3080 3481 3.648067 GTGATATCTGGGGATCTCCAACA 59.352 47.826 17.04 5.50 36.21 3.33
3115 3516 6.913170 ACACTGGTAATGTTTCTGCAAATAG 58.087 36.000 0.00 0.00 0.00 1.73
3198 3599 6.630071 AGTTGGTACCATAATGAATTTGCAC 58.370 36.000 17.17 5.91 0.00 4.57
3215 3616 1.608283 GCACCACTTTCCTACGAAGCT 60.608 52.381 0.00 0.00 0.00 3.74
3236 3637 8.659925 AAGCTGATAGAACAATATTGACTCAG 57.340 34.615 22.16 20.95 0.00 3.35
3460 8178 5.136105 AGCAACAGAACAGAGGAATTTTCT 58.864 37.500 0.00 0.00 0.00 2.52
3497 8224 9.346005 TGCTGATATCATTTGATCACATTTAGT 57.654 29.630 5.72 0.00 36.05 2.24
3523 8253 4.625742 CGTGTATATAGCCTAATGGTGTGC 59.374 45.833 0.00 0.00 35.27 4.57
3561 8292 3.709141 AGAAGATGTAGCTCCCTCTTTCC 59.291 47.826 0.00 0.00 0.00 3.13
3580 8311 4.148128 TCCTCTGCCAAGATTCTCATTC 57.852 45.455 0.00 0.00 0.00 2.67
3757 12820 1.203523 TGAATTCCGGGGCAAATTTCG 59.796 47.619 0.00 0.00 0.00 3.46
3910 12988 2.363018 CTCACTGCTCCCCCTCGA 60.363 66.667 0.00 0.00 0.00 4.04
3911 12989 1.760086 CTCACTGCTCCCCCTCGAT 60.760 63.158 0.00 0.00 0.00 3.59
3912 12990 1.306141 TCACTGCTCCCCCTCGATT 60.306 57.895 0.00 0.00 0.00 3.34
3913 12991 1.153289 CACTGCTCCCCCTCGATTG 60.153 63.158 0.00 0.00 0.00 2.67
3970 13048 1.002868 GTGATCACCCTGCAGCAGT 60.003 57.895 21.26 4.84 0.00 4.40
4084 13187 0.543277 CAATGCCAGGCCTAGACTGA 59.457 55.000 3.98 0.00 42.14 3.41
4091 13194 2.702478 CCAGGCCTAGACTGAATGATGA 59.298 50.000 3.98 0.00 42.14 2.92
4150 13257 4.778534 ATGAGTGGTCAAGCTCATTTTG 57.221 40.909 0.00 0.00 46.66 2.44
4151 13258 3.554934 TGAGTGGTCAAGCTCATTTTGT 58.445 40.909 0.00 0.00 36.89 2.83
4152 13259 3.953612 TGAGTGGTCAAGCTCATTTTGTT 59.046 39.130 0.00 0.00 36.89 2.83
4155 13262 5.376625 AGTGGTCAAGCTCATTTTGTTAGA 58.623 37.500 0.00 0.00 0.00 2.10
4159 13266 6.374333 TGGTCAAGCTCATTTTGTTAGATACC 59.626 38.462 0.00 0.00 0.00 2.73
4206 13314 4.177026 TCTAAGCAATCAGTCTTCTTCGC 58.823 43.478 0.00 0.00 0.00 4.70
4208 13316 2.615869 AGCAATCAGTCTTCTTCGCTC 58.384 47.619 0.00 0.00 0.00 5.03
4214 13322 2.488545 TCAGTCTTCTTCGCTCAGTACC 59.511 50.000 0.00 0.00 0.00 3.34
4283 13394 4.080687 ACAGTACTCAGGGTAGACAGAAC 58.919 47.826 0.00 0.00 0.00 3.01
4287 13398 1.895798 CTCAGGGTAGACAGAACTGCA 59.104 52.381 1.46 0.00 0.00 4.41
4299 13410 7.190920 AGACAGAACTGCAATTTTACTGTAC 57.809 36.000 1.29 0.00 37.27 2.90
4307 13418 7.960793 ACTGCAATTTTACTGTACGATTCTAC 58.039 34.615 0.00 0.00 0.00 2.59
4311 13422 8.440833 GCAATTTTACTGTACGATTCTACAACT 58.559 33.333 0.00 0.00 0.00 3.16
4424 13536 3.958629 ATCCTGGCAGGGGTGCTCT 62.959 63.158 32.23 6.83 35.59 4.09
4429 13541 2.373707 GGCAGGGGTGCTCTGATCT 61.374 63.158 0.00 0.00 34.36 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.173255 AAAATCAAAGCCATCGCCGG 59.827 50.000 0.00 0.00 34.57 6.13
2 3 1.655099 CAAAAATCAAAGCCATCGCCG 59.345 47.619 0.00 0.00 34.57 6.46
4 5 2.687370 ACCAAAAATCAAAGCCATCGC 58.313 42.857 0.00 0.00 0.00 4.58
6 7 6.806388 ATCAAACCAAAAATCAAAGCCATC 57.194 33.333 0.00 0.00 0.00 3.51
7 8 7.585579 AAATCAAACCAAAAATCAAAGCCAT 57.414 28.000 0.00 0.00 0.00 4.40
9 10 8.190122 AGAAAAATCAAACCAAAAATCAAAGCC 58.810 29.630 0.00 0.00 0.00 4.35
10 11 9.225201 GAGAAAAATCAAACCAAAAATCAAAGC 57.775 29.630 0.00 0.00 0.00 3.51
61 62 3.454812 GGGGCTTCTACTATTTCCACTCA 59.545 47.826 0.00 0.00 0.00 3.41
79 80 0.106708 TCGTCAAGATAGCATGGGGC 59.893 55.000 0.00 0.00 45.30 5.80
104 105 3.436359 GCCCATGCGAAATTGTTTTTGAT 59.564 39.130 0.00 0.00 0.00 2.57
149 151 2.617021 GGGGAGACTGGTCGCAATTTTA 60.617 50.000 6.78 0.00 34.09 1.52
186 188 1.137404 GACAACATGGCATGACGGC 59.863 57.895 32.74 20.71 41.67 5.68
231 233 4.202151 GGGTGAAACTTTGTGCTCTGAATT 60.202 41.667 0.00 0.00 36.74 2.17
290 292 4.613031 GCTTGTTCTTTCTTCGAATTTCCG 59.387 41.667 0.00 0.00 0.00 4.30
291 293 5.763088 AGCTTGTTCTTTCTTCGAATTTCC 58.237 37.500 0.00 0.00 0.00 3.13
329 331 7.232330 TCTCTATCTGGATGTTGGTAGATCTTG 59.768 40.741 0.00 0.00 32.54 3.02
339 592 6.666980 TCCATAGGATCTCTATCTGGATGTTG 59.333 42.308 8.41 0.00 36.59 3.33
346 599 5.421693 CCCAGTTCCATAGGATCTCTATCTG 59.578 48.000 0.00 2.65 36.59 2.90
366 619 3.670625 TGACTTATTTTCCACGTCCCAG 58.329 45.455 0.00 0.00 0.00 4.45
400 653 5.011943 AGCAAAGAGGCATGGTTATCAAAAA 59.988 36.000 0.00 0.00 35.83 1.94
402 655 4.088634 AGCAAAGAGGCATGGTTATCAAA 58.911 39.130 0.00 0.00 35.83 2.69
403 656 3.696051 GAGCAAAGAGGCATGGTTATCAA 59.304 43.478 0.00 0.00 35.83 2.57
404 657 3.054139 AGAGCAAAGAGGCATGGTTATCA 60.054 43.478 0.00 0.00 35.83 2.15
405 658 3.314635 CAGAGCAAAGAGGCATGGTTATC 59.685 47.826 0.00 0.00 35.83 1.75
407 660 2.305635 TCAGAGCAAAGAGGCATGGTTA 59.694 45.455 0.00 0.00 35.83 2.85
408 661 1.074405 TCAGAGCAAAGAGGCATGGTT 59.926 47.619 0.00 0.00 35.83 3.67
409 662 0.694771 TCAGAGCAAAGAGGCATGGT 59.305 50.000 0.00 0.00 35.83 3.55
410 663 1.830279 TTCAGAGCAAAGAGGCATGG 58.170 50.000 0.00 0.00 35.83 3.66
411 664 2.163815 CCTTTCAGAGCAAAGAGGCATG 59.836 50.000 0.00 0.00 35.67 4.06
412 665 2.224967 ACCTTTCAGAGCAAAGAGGCAT 60.225 45.455 0.00 0.00 35.67 4.40
413 666 1.143684 ACCTTTCAGAGCAAAGAGGCA 59.856 47.619 0.00 0.00 35.67 4.75
414 667 1.809547 GACCTTTCAGAGCAAAGAGGC 59.190 52.381 0.00 0.00 35.67 4.70
415 668 3.415457 AGACCTTTCAGAGCAAAGAGG 57.585 47.619 0.00 0.00 35.67 3.69
500 753 6.630444 TTTAGTATCTAGTGCCTACTTCCG 57.370 41.667 0.00 0.00 38.36 4.30
517 770 7.494625 CAGGTTAATTCGCTCATCCTTTTAGTA 59.505 37.037 0.00 0.00 0.00 1.82
520 773 6.093495 CACAGGTTAATTCGCTCATCCTTTTA 59.907 38.462 0.00 0.00 0.00 1.52
531 784 3.907894 TCCAAACACAGGTTAATTCGC 57.092 42.857 0.00 0.00 35.82 4.70
532 785 4.217550 ACCATCCAAACACAGGTTAATTCG 59.782 41.667 0.00 0.00 35.82 3.34
533 786 5.722021 ACCATCCAAACACAGGTTAATTC 57.278 39.130 0.00 0.00 35.82 2.17
534 787 7.007723 TCTAACCATCCAAACACAGGTTAATT 58.992 34.615 0.00 0.00 42.40 1.40
536 789 5.942961 TCTAACCATCCAAACACAGGTTAA 58.057 37.500 0.00 0.00 42.40 2.01
537 790 5.514136 CCTCTAACCATCCAAACACAGGTTA 60.514 44.000 0.00 0.00 42.23 2.85
539 792 3.244911 CCTCTAACCATCCAAACACAGGT 60.245 47.826 0.00 0.00 0.00 4.00
540 793 3.347216 CCTCTAACCATCCAAACACAGG 58.653 50.000 0.00 0.00 0.00 4.00
542 795 2.983192 TCCCTCTAACCATCCAAACACA 59.017 45.455 0.00 0.00 0.00 3.72
543 796 3.344515 GTCCCTCTAACCATCCAAACAC 58.655 50.000 0.00 0.00 0.00 3.32
544 797 2.307686 GGTCCCTCTAACCATCCAAACA 59.692 50.000 0.00 0.00 36.75 2.83
545 798 2.679930 CGGTCCCTCTAACCATCCAAAC 60.680 54.545 0.00 0.00 36.53 2.93
548 801 0.042131 ACGGTCCCTCTAACCATCCA 59.958 55.000 0.00 0.00 36.53 3.41
549 802 0.464452 CACGGTCCCTCTAACCATCC 59.536 60.000 0.00 0.00 36.53 3.51
551 804 0.252558 ACCACGGTCCCTCTAACCAT 60.253 55.000 0.00 0.00 36.53 3.55
552 805 0.409092 TACCACGGTCCCTCTAACCA 59.591 55.000 0.00 0.00 36.53 3.67
553 806 1.685517 GATACCACGGTCCCTCTAACC 59.314 57.143 0.00 0.00 0.00 2.85
554 807 1.685517 GGATACCACGGTCCCTCTAAC 59.314 57.143 0.00 0.00 0.00 2.34
555 808 2.077687 GGATACCACGGTCCCTCTAA 57.922 55.000 0.00 0.00 0.00 2.10
556 809 3.835810 GGATACCACGGTCCCTCTA 57.164 57.895 0.00 0.00 0.00 2.43
557 810 4.701286 GGATACCACGGTCCCTCT 57.299 61.111 0.00 0.00 0.00 3.69
569 822 1.763770 CCTGATGGGCTGGGGATAC 59.236 63.158 0.00 0.00 32.31 2.24
570 823 4.337474 CCTGATGGGCTGGGGATA 57.663 61.111 0.00 0.00 32.31 2.59
585 838 2.681976 CGAGCATCAGGATTTGAACCCT 60.682 50.000 0.00 0.00 39.77 4.34
586 839 1.672881 CGAGCATCAGGATTTGAACCC 59.327 52.381 0.00 0.00 39.77 4.11
587 840 1.064654 GCGAGCATCAGGATTTGAACC 59.935 52.381 0.00 0.00 39.77 3.62
588 841 1.739466 TGCGAGCATCAGGATTTGAAC 59.261 47.619 0.00 0.00 39.77 3.18
589 842 2.112380 TGCGAGCATCAGGATTTGAA 57.888 45.000 0.00 0.00 39.77 2.69
590 843 2.336945 ATGCGAGCATCAGGATTTGA 57.663 45.000 4.52 0.00 40.85 2.69
591 844 3.431922 AAATGCGAGCATCAGGATTTG 57.568 42.857 11.26 0.00 37.87 2.32
592 845 5.779529 AATAAATGCGAGCATCAGGATTT 57.220 34.783 11.26 4.40 40.41 2.17
593 846 5.533903 AGAAATAAATGCGAGCATCAGGATT 59.466 36.000 11.26 4.31 35.31 3.01
594 847 5.048921 CAGAAATAAATGCGAGCATCAGGAT 60.049 40.000 11.26 0.39 35.31 3.24
595 848 4.274214 CAGAAATAAATGCGAGCATCAGGA 59.726 41.667 11.26 0.00 35.31 3.86
596 849 4.534168 CAGAAATAAATGCGAGCATCAGG 58.466 43.478 11.26 0.00 35.31 3.86
597 850 4.274214 TCCAGAAATAAATGCGAGCATCAG 59.726 41.667 11.26 0.00 35.31 2.90
598 851 4.198530 TCCAGAAATAAATGCGAGCATCA 58.801 39.130 11.26 3.11 35.31 3.07
599 852 4.818534 TCCAGAAATAAATGCGAGCATC 57.181 40.909 11.26 0.00 35.31 3.91
600 853 5.779529 AATCCAGAAATAAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
601 854 5.581126 AAATCCAGAAATAAATGCGAGCA 57.419 34.783 0.00 0.00 0.00 4.26
602 855 8.579682 AAATAAATCCAGAAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
603 856 9.734620 TGAAATAAATCCAGAAATAAATGCGAG 57.265 29.630 0.00 0.00 0.00 5.03
604 857 9.734620 CTGAAATAAATCCAGAAATAAATGCGA 57.265 29.630 0.00 0.00 0.00 5.10
605 858 8.971321 CCTGAAATAAATCCAGAAATAAATGCG 58.029 33.333 0.00 0.00 0.00 4.73
612 865 9.807649 CGAAAATCCTGAAATAAATCCAGAAAT 57.192 29.630 0.00 0.00 0.00 2.17
613 866 8.250332 CCGAAAATCCTGAAATAAATCCAGAAA 58.750 33.333 0.00 0.00 0.00 2.52
614 867 7.630513 GCCGAAAATCCTGAAATAAATCCAGAA 60.631 37.037 0.00 0.00 0.00 3.02
615 868 6.183360 GCCGAAAATCCTGAAATAAATCCAGA 60.183 38.462 0.00 0.00 0.00 3.86
616 869 5.979517 GCCGAAAATCCTGAAATAAATCCAG 59.020 40.000 0.00 0.00 0.00 3.86
617 870 5.449862 CGCCGAAAATCCTGAAATAAATCCA 60.450 40.000 0.00 0.00 0.00 3.41
618 871 4.976116 CGCCGAAAATCCTGAAATAAATCC 59.024 41.667 0.00 0.00 0.00 3.01
619 872 5.816919 TCGCCGAAAATCCTGAAATAAATC 58.183 37.500 0.00 0.00 0.00 2.17
620 873 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
621 874 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
622 875 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
623 876 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
624 877 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
625 878 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
626 879 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
627 880 0.392327 TGCATCGCCGAAAATCCTGA 60.392 50.000 0.00 0.00 0.00 3.86
628 881 0.248215 GTGCATCGCCGAAAATCCTG 60.248 55.000 0.00 0.00 0.00 3.86
629 882 0.676466 TGTGCATCGCCGAAAATCCT 60.676 50.000 0.00 0.00 0.00 3.24
630 883 0.381801 ATGTGCATCGCCGAAAATCC 59.618 50.000 0.00 0.00 0.00 3.01
631 884 2.111756 GAATGTGCATCGCCGAAAATC 58.888 47.619 0.00 0.00 0.00 2.17
632 885 1.472082 TGAATGTGCATCGCCGAAAAT 59.528 42.857 0.00 0.00 0.00 1.82
633 886 0.877743 TGAATGTGCATCGCCGAAAA 59.122 45.000 0.00 0.00 0.00 2.29
634 887 0.447406 CTGAATGTGCATCGCCGAAA 59.553 50.000 0.00 0.00 0.00 3.46
635 888 0.673333 ACTGAATGTGCATCGCCGAA 60.673 50.000 0.00 0.00 0.00 4.30
636 889 1.079197 ACTGAATGTGCATCGCCGA 60.079 52.632 0.00 0.00 0.00 5.54
637 890 1.061411 CACTGAATGTGCATCGCCG 59.939 57.895 0.00 0.00 40.06 6.46
638 891 1.430632 CCACTGAATGTGCATCGCC 59.569 57.895 0.00 0.00 44.92 5.54
639 892 1.026182 TCCCACTGAATGTGCATCGC 61.026 55.000 0.00 0.00 44.92 4.58
640 893 1.012086 CTCCCACTGAATGTGCATCG 58.988 55.000 0.00 0.00 44.92 3.84
641 894 1.386533 CCTCCCACTGAATGTGCATC 58.613 55.000 0.00 0.00 44.92 3.91
642 895 0.033796 CCCTCCCACTGAATGTGCAT 60.034 55.000 0.00 0.00 44.92 3.96
643 896 1.379916 CCCTCCCACTGAATGTGCA 59.620 57.895 0.00 0.00 44.92 4.57
644 897 1.379044 CCCCTCCCACTGAATGTGC 60.379 63.158 0.00 0.00 44.92 4.57
645 898 0.035056 GTCCCCTCCCACTGAATGTG 60.035 60.000 0.00 0.00 45.80 3.21
646 899 1.553690 CGTCCCCTCCCACTGAATGT 61.554 60.000 0.00 0.00 0.00 2.71
647 900 1.221840 CGTCCCCTCCCACTGAATG 59.778 63.158 0.00 0.00 0.00 2.67
648 901 0.840722 AACGTCCCCTCCCACTGAAT 60.841 55.000 0.00 0.00 0.00 2.57
649 902 1.057851 AAACGTCCCCTCCCACTGAA 61.058 55.000 0.00 0.00 0.00 3.02
650 903 1.460689 AAACGTCCCCTCCCACTGA 60.461 57.895 0.00 0.00 0.00 3.41
651 904 1.003718 GAAACGTCCCCTCCCACTG 60.004 63.158 0.00 0.00 0.00 3.66
652 905 2.222013 GGAAACGTCCCCTCCCACT 61.222 63.158 0.00 0.00 38.08 4.00
653 906 2.350134 GGAAACGTCCCCTCCCAC 59.650 66.667 0.00 0.00 38.08 4.61
671 924 0.792356 GTAAGCACCTCGTCGTCGAC 60.792 60.000 15.51 15.51 41.35 4.20
672 925 1.499056 GTAAGCACCTCGTCGTCGA 59.501 57.895 4.42 4.42 44.12 4.20
673 926 1.862147 CGTAAGCACCTCGTCGTCG 60.862 63.158 0.00 0.00 38.55 5.12
674 927 0.098376 ATCGTAAGCACCTCGTCGTC 59.902 55.000 0.00 0.00 37.18 4.20
675 928 0.524862 AATCGTAAGCACCTCGTCGT 59.475 50.000 0.00 0.00 37.18 4.34
676 929 2.107178 GTAATCGTAAGCACCTCGTCG 58.893 52.381 0.00 0.00 37.18 5.12
677 930 3.417690 AGTAATCGTAAGCACCTCGTC 57.582 47.619 0.00 0.00 37.18 4.20
678 931 3.730061 CGAAGTAATCGTAAGCACCTCGT 60.730 47.826 0.00 0.00 46.52 4.18
679 932 2.782192 CGAAGTAATCGTAAGCACCTCG 59.218 50.000 0.00 0.00 46.52 4.63
696 949 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
697 950 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
698 951 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
699 952 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
700 953 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
701 954 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
702 955 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
703 956 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
704 957 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
705 958 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
706 959 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
707 960 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
708 961 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
709 962 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
710 963 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
711 964 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
712 965 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
713 966 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
714 967 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
715 968 1.486310 TGAAAGACTGAGCCGGCATAT 59.514 47.619 31.54 8.11 0.00 1.78
716 969 0.901827 TGAAAGACTGAGCCGGCATA 59.098 50.000 31.54 16.21 0.00 3.14
717 970 0.392193 CTGAAAGACTGAGCCGGCAT 60.392 55.000 31.54 14.28 34.07 4.40
718 971 1.004560 CTGAAAGACTGAGCCGGCA 60.005 57.895 31.54 7.98 34.07 5.69
719 972 1.293498 TCTGAAAGACTGAGCCGGC 59.707 57.895 21.89 21.89 38.67 6.13
729 982 6.728089 ATCTCTATGAGCATGTCTGAAAGA 57.272 37.500 0.00 0.00 43.69 2.52
730 983 7.092079 CCTATCTCTATGAGCATGTCTGAAAG 58.908 42.308 0.00 0.00 0.00 2.62
731 984 6.014755 CCCTATCTCTATGAGCATGTCTGAAA 60.015 42.308 0.00 0.00 0.00 2.69
732 985 5.479724 CCCTATCTCTATGAGCATGTCTGAA 59.520 44.000 0.00 0.00 0.00 3.02
733 986 5.015515 CCCTATCTCTATGAGCATGTCTGA 58.984 45.833 0.00 0.00 0.00 3.27
734 987 4.771577 ACCCTATCTCTATGAGCATGTCTG 59.228 45.833 0.00 0.00 0.00 3.51
735 988 5.009436 ACCCTATCTCTATGAGCATGTCT 57.991 43.478 0.00 0.00 0.00 3.41
736 989 6.682611 GCATACCCTATCTCTATGAGCATGTC 60.683 46.154 0.00 0.00 0.00 3.06
737 990 5.128499 GCATACCCTATCTCTATGAGCATGT 59.872 44.000 0.00 0.00 0.00 3.21
738 991 5.363292 AGCATACCCTATCTCTATGAGCATG 59.637 44.000 0.00 0.00 0.00 4.06
739 992 5.527385 AGCATACCCTATCTCTATGAGCAT 58.473 41.667 0.00 0.00 0.00 3.79
740 993 4.940483 AGCATACCCTATCTCTATGAGCA 58.060 43.478 0.00 0.00 0.00 4.26
741 994 5.930837 AAGCATACCCTATCTCTATGAGC 57.069 43.478 0.00 0.00 0.00 4.26
742 995 8.412456 CACATAAGCATACCCTATCTCTATGAG 58.588 40.741 0.00 0.00 0.00 2.90
743 996 7.147828 GCACATAAGCATACCCTATCTCTATGA 60.148 40.741 0.00 0.00 0.00 2.15
744 997 6.983307 GCACATAAGCATACCCTATCTCTATG 59.017 42.308 0.00 0.00 0.00 2.23
745 998 6.183360 CGCACATAAGCATACCCTATCTCTAT 60.183 42.308 0.00 0.00 0.00 1.98
746 999 5.125578 CGCACATAAGCATACCCTATCTCTA 59.874 44.000 0.00 0.00 0.00 2.43
747 1000 4.081972 CGCACATAAGCATACCCTATCTCT 60.082 45.833 0.00 0.00 0.00 3.10
748 1001 4.177026 CGCACATAAGCATACCCTATCTC 58.823 47.826 0.00 0.00 0.00 2.75
749 1002 3.578716 ACGCACATAAGCATACCCTATCT 59.421 43.478 0.00 0.00 0.00 1.98
750 1003 3.926616 ACGCACATAAGCATACCCTATC 58.073 45.455 0.00 0.00 0.00 2.08
751 1004 4.202315 TGAACGCACATAAGCATACCCTAT 60.202 41.667 0.00 0.00 0.00 2.57
752 1005 3.133183 TGAACGCACATAAGCATACCCTA 59.867 43.478 0.00 0.00 0.00 3.53
753 1006 2.093181 TGAACGCACATAAGCATACCCT 60.093 45.455 0.00 0.00 0.00 4.34
754 1007 2.285083 TGAACGCACATAAGCATACCC 58.715 47.619 0.00 0.00 0.00 3.69
755 1008 4.152402 CCTATGAACGCACATAAGCATACC 59.848 45.833 4.25 0.00 33.26 2.73
756 1009 4.152402 CCCTATGAACGCACATAAGCATAC 59.848 45.833 4.25 0.00 33.26 2.39
757 1010 4.039852 TCCCTATGAACGCACATAAGCATA 59.960 41.667 4.25 0.00 33.26 3.14
758 1011 3.141398 CCCTATGAACGCACATAAGCAT 58.859 45.455 4.25 0.00 33.26 3.79
759 1012 2.169561 TCCCTATGAACGCACATAAGCA 59.830 45.455 4.25 0.00 33.26 3.91
760 1013 2.833794 TCCCTATGAACGCACATAAGC 58.166 47.619 4.25 0.00 33.26 3.09
761 1014 4.631131 TCATCCCTATGAACGCACATAAG 58.369 43.478 4.25 0.00 39.20 1.73
762 1015 4.100963 ACTCATCCCTATGAACGCACATAA 59.899 41.667 4.25 0.00 41.57 1.90
763 1016 3.641436 ACTCATCCCTATGAACGCACATA 59.359 43.478 2.94 2.94 41.57 2.29
764 1017 2.435805 ACTCATCCCTATGAACGCACAT 59.564 45.455 0.94 0.94 41.57 3.21
765 1018 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
766 1019 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
767 1020 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
768 1021 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
769 1022 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
770 1023 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
771 1024 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
772 1025 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
773 1026 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
774 1027 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
775 1028 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
776 1029 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
777 1030 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
778 1031 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
779 1032 1.517276 GTACACGCGCATACACTCATC 59.483 52.381 5.73 0.00 0.00 2.92
780 1033 1.135228 TGTACACGCGCATACACTCAT 60.135 47.619 16.59 0.00 0.00 2.90
781 1034 0.241481 TGTACACGCGCATACACTCA 59.759 50.000 16.59 0.00 0.00 3.41
782 1035 1.255342 CATGTACACGCGCATACACTC 59.745 52.381 21.26 0.06 34.24 3.51
783 1036 1.135228 TCATGTACACGCGCATACACT 60.135 47.619 21.26 10.71 34.24 3.55
784 1037 1.255342 CTCATGTACACGCGCATACAC 59.745 52.381 21.26 7.44 34.24 2.90
785 1038 1.555477 CTCATGTACACGCGCATACA 58.445 50.000 21.14 21.14 35.82 2.29
786 1039 0.229753 GCTCATGTACACGCGCATAC 59.770 55.000 5.73 9.92 0.00 2.39
787 1040 1.206115 CGCTCATGTACACGCGCATA 61.206 55.000 18.77 0.00 39.11 3.14
788 1041 2.516589 CGCTCATGTACACGCGCAT 61.517 57.895 18.77 0.00 39.11 4.73
789 1042 3.178592 CGCTCATGTACACGCGCA 61.179 61.111 18.77 0.00 39.11 6.09
793 1046 1.059369 GCAAGCGCTCATGTACACG 59.941 57.895 12.06 0.00 34.30 4.49
794 1047 1.059369 CGCAAGCGCTCATGTACAC 59.941 57.895 12.06 0.00 35.30 2.90
795 1048 1.351430 GACGCAAGCGCTCATGTACA 61.351 55.000 12.06 0.00 44.19 2.90
796 1049 1.078759 AGACGCAAGCGCTCATGTAC 61.079 55.000 12.06 1.00 44.19 2.90
797 1050 1.078201 CAGACGCAAGCGCTCATGTA 61.078 55.000 12.06 0.00 44.19 2.29
798 1051 2.047844 AGACGCAAGCGCTCATGT 60.048 55.556 12.06 9.53 44.19 3.21
799 1052 1.078201 TACAGACGCAAGCGCTCATG 61.078 55.000 12.06 7.74 44.19 3.07
800 1053 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
801 1054 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
802 1055 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
803 1056 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
804 1057 2.772189 CAGTACAGACGCAAGCGC 59.228 61.111 15.09 0.00 44.19 5.92
805 1058 2.772189 GCAGTACAGACGCAAGCG 59.228 61.111 13.50 13.50 46.03 4.68
806 1059 1.557443 AACGCAGTACAGACGCAAGC 61.557 55.000 0.00 0.00 45.00 4.01
807 1060 1.693467 TAACGCAGTACAGACGCAAG 58.307 50.000 0.00 0.00 45.00 4.01
808 1061 2.137129 TTAACGCAGTACAGACGCAA 57.863 45.000 0.00 0.00 45.00 4.85
809 1062 2.137129 TTTAACGCAGTACAGACGCA 57.863 45.000 0.00 0.00 45.00 5.24
810 1063 3.508648 TTTTTAACGCAGTACAGACGC 57.491 42.857 0.00 0.00 45.00 5.19
829 1082 2.953648 ACGACGATCCTTTTGGGTTTTT 59.046 40.909 0.00 0.00 40.87 1.94
830 1083 2.292292 CACGACGATCCTTTTGGGTTTT 59.708 45.455 0.00 0.00 40.87 2.43
831 1084 1.877443 CACGACGATCCTTTTGGGTTT 59.123 47.619 0.00 0.00 40.87 3.27
832 1085 1.519408 CACGACGATCCTTTTGGGTT 58.481 50.000 0.00 0.00 40.87 4.11
833 1086 0.953960 GCACGACGATCCTTTTGGGT 60.954 55.000 0.00 0.00 40.87 4.51
834 1087 0.953471 TGCACGACGATCCTTTTGGG 60.953 55.000 0.00 0.00 40.87 4.12
835 1088 0.871722 TTGCACGACGATCCTTTTGG 59.128 50.000 0.00 0.00 42.21 3.28
836 1089 2.679355 TTTGCACGACGATCCTTTTG 57.321 45.000 0.00 0.00 0.00 2.44
837 1090 2.875933 TCTTTTGCACGACGATCCTTTT 59.124 40.909 0.00 0.00 0.00 2.27
838 1091 2.480419 CTCTTTTGCACGACGATCCTTT 59.520 45.455 0.00 0.00 0.00 3.11
846 1099 0.514691 CAGAGGCTCTTTTGCACGAC 59.485 55.000 15.90 0.00 34.04 4.34
852 1105 2.413371 GCGCTTAACAGAGGCTCTTTTG 60.413 50.000 22.80 12.61 0.00 2.44
872 1132 5.127693 TCAGTCAGAGTTCAGACTTAAGC 57.872 43.478 1.29 0.00 40.14 3.09
967 1234 0.471617 AGGAGAATGCCAATCGGAGG 59.528 55.000 0.00 0.00 0.00 4.30
973 1240 0.543277 TGCGAGAGGAGAATGCCAAT 59.457 50.000 0.00 0.00 0.00 3.16
974 1241 0.391661 GTGCGAGAGGAGAATGCCAA 60.392 55.000 0.00 0.00 0.00 4.52
975 1242 1.219124 GTGCGAGAGGAGAATGCCA 59.781 57.895 0.00 0.00 0.00 4.92
1065 1332 3.628280 GAGAGACGGCACCGGTGAC 62.628 68.421 38.30 35.06 44.69 3.67
1206 1473 3.777925 CGCCCGTGTTCAGCTTCG 61.778 66.667 0.00 0.00 0.00 3.79
1222 1489 3.760035 CACGTCCTCCTCCCACCG 61.760 72.222 0.00 0.00 0.00 4.94
1288 1555 4.876107 ACATACTTGCAGAATTCGTAAGGG 59.124 41.667 21.82 16.11 38.47 3.95
1326 1593 9.866655 AGATTAGGCATCTAATTTTCCATTGTA 57.133 29.630 0.00 0.00 43.91 2.41
1327 1594 8.773033 AGATTAGGCATCTAATTTTCCATTGT 57.227 30.769 0.00 0.00 43.91 2.71
1339 1606 7.603180 TCTTTGCTCTTAGATTAGGCATCTA 57.397 36.000 0.00 0.00 40.85 1.98
1340 1607 6.491714 TCTTTGCTCTTAGATTAGGCATCT 57.508 37.500 0.00 0.00 45.08 2.90
1341 1608 7.559590 TTTCTTTGCTCTTAGATTAGGCATC 57.440 36.000 0.00 0.00 32.87 3.91
1342 1609 7.559170 ACATTTCTTTGCTCTTAGATTAGGCAT 59.441 33.333 0.00 0.00 32.87 4.40
1447 1715 1.664873 AGCACACATATCAGCAGCAG 58.335 50.000 0.00 0.00 0.00 4.24
1464 1740 1.200020 GCATCTGGTGGTGTAACAAGC 59.800 52.381 0.00 0.00 39.19 4.01
1465 1741 1.812571 GGCATCTGGTGGTGTAACAAG 59.187 52.381 0.00 0.00 39.98 3.16
1471 1760 0.034767 CATCTGGCATCTGGTGGTGT 60.035 55.000 0.00 0.00 0.00 4.16
1498 1787 5.707066 AGTATGCCTTCTTGATTTCCTCT 57.293 39.130 0.00 0.00 0.00 3.69
1516 1805 4.093408 CACGTTTTCATGCAGCTGTAGTAT 59.907 41.667 16.64 2.43 0.00 2.12
1561 1850 2.795231 AGTTGGTCACATCAGGATGG 57.205 50.000 13.40 3.42 42.91 3.51
1562 1851 3.937706 GAGAAGTTGGTCACATCAGGATG 59.062 47.826 7.70 7.70 44.15 3.51
1564 1853 2.303022 GGAGAAGTTGGTCACATCAGGA 59.697 50.000 0.00 0.00 0.00 3.86
1632 1921 4.624015 ACCATTTCAATGAAGCAACACAG 58.376 39.130 0.81 0.00 38.70 3.66
1635 1924 4.828939 AGAGACCATTTCAATGAAGCAACA 59.171 37.500 0.81 0.00 38.70 3.33
1680 2064 0.807667 CCTGCTCTTCGAATCCCACG 60.808 60.000 0.00 0.00 0.00 4.94
1761 2145 2.621526 GTCATCAACGAAAGGGTTGGTT 59.378 45.455 5.69 0.00 45.66 3.67
1800 2184 3.572584 AGTAAACTCATCGACGAACACC 58.427 45.455 0.00 0.00 0.00 4.16
1885 2269 7.741554 AATACACTGACTCCCTTAAGAAGAT 57.258 36.000 3.36 0.00 0.00 2.40
1891 2275 9.667107 CAAGATAAAATACACTGACTCCCTTAA 57.333 33.333 0.00 0.00 0.00 1.85
1921 2305 1.014044 TCTGCATCCTGAAACGACGC 61.014 55.000 0.00 0.00 0.00 5.19
2031 2415 4.037208 CCAACTATCAATGGCATCCTGAAC 59.963 45.833 0.00 0.00 0.00 3.18
2072 2456 8.175716 GCCGTAATCTCCAAGTAAATATTATGC 58.824 37.037 0.00 0.00 0.00 3.14
2084 2468 0.815615 GGCAGGCCGTAATCTCCAAG 60.816 60.000 0.00 0.00 0.00 3.61
2091 2475 2.514803 GGATAATTGGCAGGCCGTAAT 58.485 47.619 5.74 0.00 39.42 1.89
2095 2479 1.903404 GGGGATAATTGGCAGGCCG 60.903 63.158 5.74 0.00 39.42 6.13
2124 2508 6.219417 TCTGAAAATTTTGCAAGGACTTGA 57.781 33.333 15.76 0.00 42.93 3.02
2224 2608 3.222603 GGGCTGGAAATGGAAATACGAT 58.777 45.455 0.00 0.00 0.00 3.73
2235 2619 1.915141 CAGTCAACTGGGCTGGAAAT 58.085 50.000 2.08 0.00 40.20 2.17
2267 2651 1.945394 AGTGAAAGTTGTGCAGCAGAG 59.055 47.619 0.00 0.00 0.00 3.35
2463 2847 6.990349 CCAGAGTAAACACAGGAACTTTCTTA 59.010 38.462 0.00 0.00 34.60 2.10
2470 2854 7.506328 AATAAACCAGAGTAAACACAGGAAC 57.494 36.000 0.00 0.00 0.00 3.62
2541 2925 0.324645 ATTAGCCCAACCTGCCCAAG 60.325 55.000 0.00 0.00 0.00 3.61
2558 2942 1.572415 ACTCCCATCCCAGCATTCATT 59.428 47.619 0.00 0.00 0.00 2.57
2583 2967 6.567687 TGTTACCATTCGAAACACATTGAT 57.432 33.333 0.00 0.00 0.00 2.57
2588 2972 2.550606 GGCTGTTACCATTCGAAACACA 59.449 45.455 0.00 0.19 0.00 3.72
2591 2975 1.465187 GCGGCTGTTACCATTCGAAAC 60.465 52.381 0.00 0.00 0.00 2.78
2605 2989 1.133253 CACACGAATGAAGCGGCTG 59.867 57.895 1.81 0.00 0.00 4.85
2608 2992 1.148310 AAGTCACACGAATGAAGCGG 58.852 50.000 0.00 0.00 0.00 5.52
2650 3034 5.893255 ACATAATTTTGGGAGCATGCTTAGA 59.107 36.000 23.61 5.48 0.00 2.10
2709 3093 7.072030 CAGAACTGAACTGCATTTTGTACTAC 58.928 38.462 0.00 0.00 0.00 2.73
2747 3131 4.318332 GCAGCAGGCAATATCTACATACA 58.682 43.478 0.00 0.00 43.97 2.29
2942 3337 5.047802 AGTTCCTTTGCTAACCAATGACATG 60.048 40.000 0.00 0.00 32.49 3.21
3002 3403 5.801350 TCATCATCCGTGTTCTGATTTTC 57.199 39.130 0.00 0.00 0.00 2.29
3198 3599 2.743636 TCAGCTTCGTAGGAAAGTGG 57.256 50.000 0.00 0.00 0.00 4.00
3215 3616 9.942850 TTGTTCTGAGTCAATATTGTTCTATCA 57.057 29.630 14.97 11.31 0.00 2.15
3236 3637 6.781138 TGAACAGACAGTAACACATTTGTTC 58.219 36.000 0.00 6.99 42.67 3.18
3460 8178 7.776500 TCAAATGATATCAGCAGGAATCAAGAA 59.224 33.333 11.78 0.00 31.49 2.52
3497 8224 7.372714 CACACCATTAGGCTATATACACGTAA 58.627 38.462 0.00 0.00 39.06 3.18
3501 8228 5.547465 TGCACACCATTAGGCTATATACAC 58.453 41.667 0.00 0.00 39.06 2.90
3511 8241 4.944619 TCTATCTCTGCACACCATTAGG 57.055 45.455 0.00 0.00 42.21 2.69
3561 8292 5.183969 TGAAGAATGAGAATCTTGGCAGAG 58.816 41.667 0.00 0.00 37.26 3.35
3580 8311 6.765036 AGCTACATCACCATTTACAGATGAAG 59.235 38.462 8.11 0.00 40.10 3.02
3910 12988 4.520492 GGATGAAACAGAGTTCCACACAAT 59.480 41.667 0.00 0.00 0.00 2.71
3911 12989 3.882888 GGATGAAACAGAGTTCCACACAA 59.117 43.478 0.00 0.00 0.00 3.33
3912 12990 3.476552 GGATGAAACAGAGTTCCACACA 58.523 45.455 0.00 0.00 0.00 3.72
3913 12991 2.480419 CGGATGAAACAGAGTTCCACAC 59.520 50.000 0.00 0.00 0.00 3.82
4024 13127 3.904800 TCGATCCTCATTGTGCCTTTA 57.095 42.857 0.00 0.00 0.00 1.85
4084 13187 7.834881 ATTCAGCCTTGTATGAATCATCATT 57.165 32.000 0.00 0.00 43.89 2.57
4091 13194 6.239829 CCTCTCCTATTCAGCCTTGTATGAAT 60.240 42.308 5.80 5.80 45.59 2.57
4150 13257 5.850614 TGATTTCTTAGCCGGGTATCTAAC 58.149 41.667 15.31 5.86 0.00 2.34
4151 13258 6.042781 ACATGATTTCTTAGCCGGGTATCTAA 59.957 38.462 15.31 9.01 0.00 2.10
4152 13259 5.542635 ACATGATTTCTTAGCCGGGTATCTA 59.457 40.000 15.31 0.00 0.00 1.98
4155 13262 4.102524 TCACATGATTTCTTAGCCGGGTAT 59.897 41.667 15.31 0.00 0.00 2.73
4159 13266 3.270027 TGTCACATGATTTCTTAGCCGG 58.730 45.455 0.00 0.00 0.00 6.13
4206 13314 3.567397 AGGCTAGTATGGTGGTACTGAG 58.433 50.000 0.00 0.00 36.39 3.35
4208 13316 3.567397 AGAGGCTAGTATGGTGGTACTG 58.433 50.000 0.00 0.00 36.39 2.74
4214 13322 6.183360 ACACTGAATTAGAGGCTAGTATGGTG 60.183 42.308 0.00 0.00 0.00 4.17
4283 13394 7.959733 TGTAGAATCGTACAGTAAAATTGCAG 58.040 34.615 0.00 0.00 0.00 4.41
4299 13410 9.582431 TTTGGATCTTAAGTAGTTGTAGAATCG 57.418 33.333 1.63 0.00 0.00 3.34
4398 13510 2.587307 ACCCCTGCCAGGATCTTAAATT 59.413 45.455 13.74 0.00 37.67 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.