Multiple sequence alignment - TraesCS1D01G352300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G352300 chr1D 100.000 6713 0 0 434 7146 437442746 437449458 0.000000e+00 12397.0
1 TraesCS1D01G352300 chr1D 100.000 220 0 0 1 220 437442313 437442532 2.400000e-109 407.0
2 TraesCS1D01G352300 chr1D 88.976 254 20 4 6794 7046 437477469 437477715 2.500000e-79 307.0
3 TraesCS1D01G352300 chr1D 82.609 253 36 3 6794 7046 437578481 437578725 4.340000e-52 217.0
4 TraesCS1D01G352300 chr1D 97.872 47 1 0 6705 6751 437507502 437507548 1.650000e-11 82.4
5 TraesCS1D01G352300 chr1D 90.323 62 6 0 6705 6766 437698205 437698266 1.650000e-11 82.4
6 TraesCS1D01G352300 chr1B 95.159 4111 142 20 751 4822 592846451 592850543 0.000000e+00 6436.0
7 TraesCS1D01G352300 chr1B 90.550 1037 70 13 5457 6477 592851203 592852227 0.000000e+00 1347.0
8 TraesCS1D01G352300 chr1B 93.707 588 20 6 4883 5457 592850544 592851127 0.000000e+00 865.0
9 TraesCS1D01G352300 chr1B 89.515 515 28 6 6544 7045 592852372 592852873 4.710000e-176 628.0
10 TraesCS1D01G352300 chr1B 84.800 500 34 14 6687 7146 593053250 593053747 1.400000e-126 464.0
11 TraesCS1D01G352300 chr1B 84.825 257 27 5 6794 7046 593059455 593059703 1.540000e-61 248.0
12 TraesCS1D01G352300 chr1B 84.314 255 28 6 6794 7046 592971297 592971053 9.260000e-59 239.0
13 TraesCS1D01G352300 chr1B 87.500 72 8 1 6705 6775 593010892 593010963 1.650000e-11 82.4
14 TraesCS1D01G352300 chr1B 97.872 47 1 0 6705 6751 593118155 593118201 1.650000e-11 82.4
15 TraesCS1D01G352300 chr1B 82.178 101 7 4 7046 7146 592852893 592852982 7.690000e-10 76.8
16 TraesCS1D01G352300 chr1A 94.813 3316 98 35 857 4152 534246372 534243111 0.000000e+00 5103.0
17 TraesCS1D01G352300 chr1A 94.510 1275 39 13 4184 5457 534243111 534241867 0.000000e+00 1938.0
18 TraesCS1D01G352300 chr1A 91.088 1369 81 17 5457 6789 534241791 534240428 0.000000e+00 1814.0
19 TraesCS1D01G352300 chr1A 89.894 376 14 2 6794 7146 534240385 534240011 5.050000e-126 462.0
20 TraesCS1D01G352300 chr3D 76.644 1156 231 30 1560 2694 389906542 389907679 2.850000e-168 603.0
21 TraesCS1D01G352300 chr3D 74.208 663 139 24 4424 5061 389909337 389909992 1.540000e-61 248.0
22 TraesCS1D01G352300 chr3D 83.333 252 38 4 3086 3336 389908052 389908300 5.580000e-56 230.0
23 TraesCS1D01G352300 chr3D 77.922 231 30 14 1289 1508 389906310 389906530 2.710000e-24 124.0
24 TraesCS1D01G352300 chr3A 76.537 1155 234 27 1560 2694 510590799 510591936 1.330000e-166 597.0
25 TraesCS1D01G352300 chr3A 83.051 236 38 2 3086 3320 510592379 510592613 5.620000e-51 213.0
26 TraesCS1D01G352300 chr3A 77.778 234 26 17 1286 1508 510590569 510590787 3.500000e-23 121.0
27 TraesCS1D01G352300 chr3B 75.952 1156 239 30 1560 2694 507270153 507271290 6.260000e-155 558.0
28 TraesCS1D01G352300 chr3B 74.238 656 148 14 4424 5061 507273020 507273672 9.200000e-64 255.0
29 TraesCS1D01G352300 chr3B 82.731 249 39 4 3086 3333 507271734 507271979 1.210000e-52 219.0
30 TraesCS1D01G352300 chr4D 79.842 253 27 13 6799 7046 352776039 352776272 5.740000e-36 163.0
31 TraesCS1D01G352300 chr4D 100.000 68 0 0 595 662 502029152 502029085 7.530000e-25 126.0
32 TraesCS1D01G352300 chr4A 78.313 249 24 17 6805 7045 112729105 112728879 4.500000e-27 134.0
33 TraesCS1D01G352300 chrUn 100.000 68 0 0 595 662 100221685 100221618 7.530000e-25 126.0
34 TraesCS1D01G352300 chr4B 88.119 101 7 3 6946 7045 436316139 436316235 1.630000e-21 115.0
35 TraesCS1D01G352300 chr4B 80.519 154 21 8 6706 6853 436315928 436316078 7.580000e-20 110.0
36 TraesCS1D01G352300 chr6D 95.588 68 3 0 595 662 949538 949471 7.580000e-20 110.0
37 TraesCS1D01G352300 chr5D 95.455 66 2 1 595 660 294348247 294348311 3.530000e-18 104.0
38 TraesCS1D01G352300 chr5D 100.000 42 0 0 642 683 88472131 88472090 2.140000e-10 78.7
39 TraesCS1D01G352300 chr2D 85.714 63 8 1 599 661 1760146 1760207 1.660000e-06 65.8
40 TraesCS1D01G352300 chr2A 94.872 39 2 0 623 661 1173428 1173466 2.150000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G352300 chr1D 437442313 437449458 7145 False 6402.000000 12397 100.000000 1 7146 2 chr1D.!!$F5 7145
1 TraesCS1D01G352300 chr1B 592846451 592852982 6531 False 1870.560000 6436 90.221800 751 7146 5 chr1B.!!$F5 6395
2 TraesCS1D01G352300 chr1A 534240011 534246372 6361 True 2329.250000 5103 92.576250 857 7146 4 chr1A.!!$R1 6289
3 TraesCS1D01G352300 chr3D 389906310 389909992 3682 False 301.250000 603 78.026750 1289 5061 4 chr3D.!!$F1 3772
4 TraesCS1D01G352300 chr3A 510590569 510592613 2044 False 310.333333 597 79.122000 1286 3320 3 chr3A.!!$F1 2034
5 TraesCS1D01G352300 chr3B 507270153 507273672 3519 False 344.000000 558 77.640333 1560 5061 3 chr3B.!!$F1 3501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 745 0.032815 TGTGGAAATGAGACACGCGA 59.967 50.000 15.93 0.0 37.92 5.87 F
1086 1096 0.036732 TCACCAACTGCATCCACCTC 59.963 55.000 0.00 0.0 0.00 3.85 F
2229 2287 1.227527 TATCGCGCACAATCTGGGG 60.228 57.895 8.75 0.0 33.31 4.96 F
2920 3320 1.876322 ACTGCACAGAAGAGTTCAGC 58.124 50.000 4.31 0.0 36.43 4.26 F
3684 4141 2.024176 TAGCAAGGAACTCTGGTCCA 57.976 50.000 4.36 0.0 38.49 4.02 F
5308 6114 0.322546 GACCTGGGATCACACCAACC 60.323 60.000 0.00 0.0 37.59 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2412 2470 2.841160 AAAAACCACACGCCGAGGC 61.841 57.895 3.59 3.59 37.85 4.70 R
2927 3327 1.064758 TGGTGCTTCCAGTTGTGACTT 60.065 47.619 0.00 0.00 41.93 3.01 R
3076 3480 1.127567 AGCCAGCCTGTCAGGTAACA 61.128 55.000 20.24 0.00 37.80 2.41 R
3960 4420 1.446907 CTGTGCCAAGGCTAACAGAG 58.553 55.000 20.84 2.92 43.46 3.35 R
5530 6413 0.593128 CCCTTTGAAGCCACAGTTCG 59.407 55.000 0.00 0.00 0.00 3.95 R
6510 7517 0.321671 GCAGTCCTCACAGGTTGCTA 59.678 55.000 11.90 0.00 40.90 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.716006 CTTGAGTGTGGCGCGGTG 61.716 66.667 8.83 0.00 0.00 4.94
22 23 4.683334 GTGTGGCGCGGTGCTTTC 62.683 66.667 13.85 5.05 45.43 2.62
31 32 3.773117 CGGTGCTTTCGCTTCATTT 57.227 47.368 0.00 0.00 36.97 2.32
32 33 1.606606 CGGTGCTTTCGCTTCATTTC 58.393 50.000 0.00 0.00 36.97 2.17
33 34 1.729149 CGGTGCTTTCGCTTCATTTCC 60.729 52.381 0.00 0.00 36.97 3.13
34 35 1.541588 GGTGCTTTCGCTTCATTTCCT 59.458 47.619 0.00 0.00 36.97 3.36
35 36 2.029918 GGTGCTTTCGCTTCATTTCCTT 60.030 45.455 0.00 0.00 36.97 3.36
36 37 3.237628 GTGCTTTCGCTTCATTTCCTTC 58.762 45.455 0.00 0.00 36.97 3.46
37 38 3.057946 GTGCTTTCGCTTCATTTCCTTCT 60.058 43.478 0.00 0.00 36.97 2.85
38 39 3.569701 TGCTTTCGCTTCATTTCCTTCTT 59.430 39.130 0.00 0.00 36.97 2.52
39 40 4.162072 GCTTTCGCTTCATTTCCTTCTTC 58.838 43.478 0.00 0.00 0.00 2.87
40 41 4.398247 CTTTCGCTTCATTTCCTTCTTCG 58.602 43.478 0.00 0.00 0.00 3.79
41 42 3.313012 TCGCTTCATTTCCTTCTTCGA 57.687 42.857 0.00 0.00 0.00 3.71
42 43 3.659786 TCGCTTCATTTCCTTCTTCGAA 58.340 40.909 0.00 0.00 0.00 3.71
43 44 3.679980 TCGCTTCATTTCCTTCTTCGAAG 59.320 43.478 19.35 19.35 34.39 3.79
44 45 3.752731 GCTTCATTTCCTTCTTCGAAGC 58.247 45.455 20.56 6.22 45.78 3.86
45 46 3.726190 GCTTCATTTCCTTCTTCGAAGCG 60.726 47.826 20.56 12.98 43.93 4.68
46 47 3.040147 TCATTTCCTTCTTCGAAGCGT 57.960 42.857 20.56 0.00 0.00 5.07
47 48 2.993899 TCATTTCCTTCTTCGAAGCGTC 59.006 45.455 20.56 0.00 0.00 5.19
58 59 1.920553 CGAAGCGTCGTCTTTTCAAC 58.079 50.000 14.17 0.00 42.53 3.18
59 60 1.396815 CGAAGCGTCGTCTTTTCAACC 60.397 52.381 14.17 0.00 42.53 3.77
60 61 1.865340 GAAGCGTCGTCTTTTCAACCT 59.135 47.619 0.00 0.00 0.00 3.50
61 62 1.949465 AGCGTCGTCTTTTCAACCTT 58.051 45.000 0.00 0.00 0.00 3.50
62 63 3.102052 AGCGTCGTCTTTTCAACCTTA 57.898 42.857 0.00 0.00 0.00 2.69
63 64 3.057734 AGCGTCGTCTTTTCAACCTTAG 58.942 45.455 0.00 0.00 0.00 2.18
64 65 2.157085 GCGTCGTCTTTTCAACCTTAGG 59.843 50.000 0.00 0.00 0.00 2.69
65 66 2.157085 CGTCGTCTTTTCAACCTTAGGC 59.843 50.000 0.00 0.00 0.00 3.93
66 67 2.483106 GTCGTCTTTTCAACCTTAGGCC 59.517 50.000 0.00 0.00 0.00 5.19
67 68 1.810755 CGTCTTTTCAACCTTAGGCCC 59.189 52.381 0.00 0.00 0.00 5.80
68 69 2.812613 CGTCTTTTCAACCTTAGGCCCA 60.813 50.000 0.00 0.00 0.00 5.36
69 70 3.431415 GTCTTTTCAACCTTAGGCCCAT 58.569 45.455 0.00 0.00 0.00 4.00
70 71 3.193479 GTCTTTTCAACCTTAGGCCCATG 59.807 47.826 0.00 0.00 0.00 3.66
71 72 2.990740 TTTCAACCTTAGGCCCATGT 57.009 45.000 0.00 0.00 0.00 3.21
72 73 2.214376 TTCAACCTTAGGCCCATGTG 57.786 50.000 0.00 0.00 0.00 3.21
73 74 0.331278 TCAACCTTAGGCCCATGTGG 59.669 55.000 0.00 0.00 37.09 4.17
74 75 0.331278 CAACCTTAGGCCCATGTGGA 59.669 55.000 0.00 0.00 37.39 4.02
75 76 0.331616 AACCTTAGGCCCATGTGGAC 59.668 55.000 0.00 1.36 45.96 4.02
80 81 2.044946 GGCCCATGTGGACAGGTC 60.045 66.667 0.00 0.00 44.36 3.85
81 82 2.756400 GCCCATGTGGACAGGTCA 59.244 61.111 0.00 0.00 37.39 4.02
82 83 1.074775 GCCCATGTGGACAGGTCAA 59.925 57.895 0.00 0.00 37.39 3.18
83 84 0.962356 GCCCATGTGGACAGGTCAAG 60.962 60.000 0.00 0.00 37.39 3.02
84 85 0.322816 CCCATGTGGACAGGTCAAGG 60.323 60.000 0.00 0.00 37.39 3.61
85 86 0.322816 CCATGTGGACAGGTCAAGGG 60.323 60.000 1.41 0.00 37.39 3.95
86 87 0.962356 CATGTGGACAGGTCAAGGGC 60.962 60.000 1.41 0.00 0.00 5.19
87 88 2.358737 GTGGACAGGTCAAGGGCG 60.359 66.667 1.41 0.00 0.00 6.13
88 89 2.847234 TGGACAGGTCAAGGGCGT 60.847 61.111 1.41 0.00 0.00 5.68
89 90 2.358737 GGACAGGTCAAGGGCGTG 60.359 66.667 1.41 0.00 0.00 5.34
90 91 2.426023 GACAGGTCAAGGGCGTGT 59.574 61.111 0.00 0.00 37.61 4.49
91 92 1.961277 GACAGGTCAAGGGCGTGTG 60.961 63.158 0.52 0.00 35.46 3.82
92 93 3.357079 CAGGTCAAGGGCGTGTGC 61.357 66.667 0.00 0.00 41.71 4.57
93 94 3.560251 AGGTCAAGGGCGTGTGCT 61.560 61.111 0.00 0.00 42.25 4.40
94 95 3.357079 GGTCAAGGGCGTGTGCTG 61.357 66.667 0.00 0.00 42.25 4.41
95 96 3.357079 GTCAAGGGCGTGTGCTGG 61.357 66.667 0.00 0.00 42.25 4.85
96 97 3.872603 TCAAGGGCGTGTGCTGGT 61.873 61.111 0.00 0.00 42.25 4.00
97 98 3.663176 CAAGGGCGTGTGCTGGTG 61.663 66.667 0.00 0.00 42.25 4.17
98 99 4.954970 AAGGGCGTGTGCTGGTGG 62.955 66.667 0.00 0.00 42.25 4.61
103 104 4.248842 CGTGTGCTGGTGGGTGGA 62.249 66.667 0.00 0.00 0.00 4.02
104 105 2.594592 GTGTGCTGGTGGGTGGAC 60.595 66.667 0.00 0.00 0.00 4.02
105 106 4.248842 TGTGCTGGTGGGTGGACG 62.249 66.667 0.00 0.00 0.00 4.79
106 107 3.936203 GTGCTGGTGGGTGGACGA 61.936 66.667 0.00 0.00 0.00 4.20
107 108 2.927856 TGCTGGTGGGTGGACGAT 60.928 61.111 0.00 0.00 0.00 3.73
108 109 1.610967 TGCTGGTGGGTGGACGATA 60.611 57.895 0.00 0.00 0.00 2.92
109 110 1.195442 TGCTGGTGGGTGGACGATAA 61.195 55.000 0.00 0.00 0.00 1.75
110 111 0.180406 GCTGGTGGGTGGACGATAAT 59.820 55.000 0.00 0.00 0.00 1.28
111 112 1.953559 CTGGTGGGTGGACGATAATG 58.046 55.000 0.00 0.00 0.00 1.90
112 113 0.544223 TGGTGGGTGGACGATAATGG 59.456 55.000 0.00 0.00 0.00 3.16
113 114 0.544697 GGTGGGTGGACGATAATGGT 59.455 55.000 0.00 0.00 0.00 3.55
114 115 1.764134 GGTGGGTGGACGATAATGGTA 59.236 52.381 0.00 0.00 0.00 3.25
115 116 2.370849 GGTGGGTGGACGATAATGGTAT 59.629 50.000 0.00 0.00 0.00 2.73
116 117 3.181448 GGTGGGTGGACGATAATGGTATT 60.181 47.826 0.00 0.00 0.00 1.89
117 118 4.062991 GTGGGTGGACGATAATGGTATTC 58.937 47.826 0.00 0.00 0.00 1.75
118 119 3.712218 TGGGTGGACGATAATGGTATTCA 59.288 43.478 0.00 0.00 0.00 2.57
119 120 4.349636 TGGGTGGACGATAATGGTATTCAT 59.650 41.667 0.00 0.00 37.79 2.57
120 121 4.935808 GGGTGGACGATAATGGTATTCATC 59.064 45.833 0.00 0.00 34.44 2.92
121 122 5.512404 GGGTGGACGATAATGGTATTCATCA 60.512 44.000 0.00 0.00 34.44 3.07
122 123 5.995282 GGTGGACGATAATGGTATTCATCAA 59.005 40.000 0.00 0.00 34.44 2.57
123 124 6.147821 GGTGGACGATAATGGTATTCATCAAG 59.852 42.308 0.00 0.00 34.44 3.02
124 125 6.147821 GTGGACGATAATGGTATTCATCAAGG 59.852 42.308 0.00 0.00 34.44 3.61
125 126 6.183361 TGGACGATAATGGTATTCATCAAGGT 60.183 38.462 0.00 0.00 34.44 3.50
126 127 6.369065 GGACGATAATGGTATTCATCAAGGTC 59.631 42.308 0.00 0.00 34.44 3.85
127 128 7.067496 ACGATAATGGTATTCATCAAGGTCT 57.933 36.000 0.00 0.00 34.44 3.85
128 129 6.931281 ACGATAATGGTATTCATCAAGGTCTG 59.069 38.462 0.00 0.00 34.44 3.51
129 130 6.369890 CGATAATGGTATTCATCAAGGTCTGG 59.630 42.308 0.00 0.00 34.44 3.86
130 131 5.456921 AATGGTATTCATCAAGGTCTGGT 57.543 39.130 0.00 0.00 34.44 4.00
131 132 4.927267 TGGTATTCATCAAGGTCTGGTT 57.073 40.909 0.00 0.00 0.00 3.67
132 133 5.255397 TGGTATTCATCAAGGTCTGGTTT 57.745 39.130 0.00 0.00 0.00 3.27
133 134 5.640147 TGGTATTCATCAAGGTCTGGTTTT 58.360 37.500 0.00 0.00 0.00 2.43
134 135 5.476599 TGGTATTCATCAAGGTCTGGTTTTG 59.523 40.000 0.00 0.00 0.00 2.44
135 136 5.105756 GGTATTCATCAAGGTCTGGTTTTGG 60.106 44.000 0.00 0.00 0.00 3.28
136 137 2.238521 TCATCAAGGTCTGGTTTTGGC 58.761 47.619 0.00 0.00 0.00 4.52
137 138 2.158475 TCATCAAGGTCTGGTTTTGGCT 60.158 45.455 0.00 0.00 0.00 4.75
138 139 1.981256 TCAAGGTCTGGTTTTGGCTC 58.019 50.000 0.00 0.00 0.00 4.70
139 140 0.961753 CAAGGTCTGGTTTTGGCTCC 59.038 55.000 0.00 0.00 0.00 4.70
140 141 0.537371 AAGGTCTGGTTTTGGCTCCG 60.537 55.000 0.00 0.00 0.00 4.63
141 142 1.971695 GGTCTGGTTTTGGCTCCGG 60.972 63.158 0.00 0.00 0.00 5.14
142 143 1.228154 GTCTGGTTTTGGCTCCGGT 60.228 57.895 0.00 0.00 0.00 5.28
143 144 0.822121 GTCTGGTTTTGGCTCCGGTT 60.822 55.000 0.00 0.00 0.00 4.44
144 145 0.536460 TCTGGTTTTGGCTCCGGTTC 60.536 55.000 0.00 0.00 0.00 3.62
145 146 0.821711 CTGGTTTTGGCTCCGGTTCA 60.822 55.000 0.00 0.00 0.00 3.18
146 147 0.821711 TGGTTTTGGCTCCGGTTCAG 60.822 55.000 0.00 0.00 0.00 3.02
147 148 0.822121 GGTTTTGGCTCCGGTTCAGT 60.822 55.000 0.00 0.00 0.00 3.41
148 149 1.029681 GTTTTGGCTCCGGTTCAGTT 58.970 50.000 0.00 0.00 0.00 3.16
149 150 1.001706 GTTTTGGCTCCGGTTCAGTTC 60.002 52.381 0.00 0.00 0.00 3.01
150 151 0.472471 TTTGGCTCCGGTTCAGTTCT 59.528 50.000 0.00 0.00 0.00 3.01
151 152 0.034896 TTGGCTCCGGTTCAGTTCTC 59.965 55.000 0.00 0.00 0.00 2.87
152 153 0.832135 TGGCTCCGGTTCAGTTCTCT 60.832 55.000 0.00 0.00 0.00 3.10
153 154 1.183549 GGCTCCGGTTCAGTTCTCTA 58.816 55.000 0.00 0.00 0.00 2.43
154 155 1.549170 GGCTCCGGTTCAGTTCTCTAA 59.451 52.381 0.00 0.00 0.00 2.10
155 156 2.608268 GCTCCGGTTCAGTTCTCTAAC 58.392 52.381 0.00 0.00 35.72 2.34
157 158 3.306156 GCTCCGGTTCAGTTCTCTAACTT 60.306 47.826 0.00 0.00 43.60 2.66
158 159 4.238514 CTCCGGTTCAGTTCTCTAACTTG 58.761 47.826 0.00 0.00 43.60 3.16
159 160 3.893200 TCCGGTTCAGTTCTCTAACTTGA 59.107 43.478 0.00 0.00 43.60 3.02
160 161 4.527038 TCCGGTTCAGTTCTCTAACTTGAT 59.473 41.667 0.00 0.00 43.60 2.57
161 162 4.627467 CCGGTTCAGTTCTCTAACTTGATG 59.373 45.833 0.00 0.00 43.60 3.07
162 163 5.230942 CGGTTCAGTTCTCTAACTTGATGT 58.769 41.667 0.00 0.00 43.60 3.06
163 164 5.346281 CGGTTCAGTTCTCTAACTTGATGTC 59.654 44.000 0.00 0.00 43.60 3.06
164 165 6.459923 GGTTCAGTTCTCTAACTTGATGTCT 58.540 40.000 0.00 0.00 43.60 3.41
165 166 6.588373 GGTTCAGTTCTCTAACTTGATGTCTC 59.412 42.308 0.00 0.00 43.60 3.36
166 167 7.375053 GTTCAGTTCTCTAACTTGATGTCTCT 58.625 38.462 0.00 0.00 43.60 3.10
167 168 7.531857 TCAGTTCTCTAACTTGATGTCTCTT 57.468 36.000 0.00 0.00 43.60 2.85
168 169 7.957002 TCAGTTCTCTAACTTGATGTCTCTTT 58.043 34.615 0.00 0.00 43.60 2.52
169 170 8.085296 TCAGTTCTCTAACTTGATGTCTCTTTC 58.915 37.037 0.00 0.00 43.60 2.62
170 171 7.330700 CAGTTCTCTAACTTGATGTCTCTTTCC 59.669 40.741 0.00 0.00 43.60 3.13
171 172 6.918067 TCTCTAACTTGATGTCTCTTTCCA 57.082 37.500 0.00 0.00 0.00 3.53
172 173 7.487822 TCTCTAACTTGATGTCTCTTTCCAT 57.512 36.000 0.00 0.00 0.00 3.41
173 174 7.326454 TCTCTAACTTGATGTCTCTTTCCATG 58.674 38.462 0.00 0.00 0.00 3.66
174 175 7.009179 TCTAACTTGATGTCTCTTTCCATGT 57.991 36.000 0.00 0.00 0.00 3.21
175 176 8.134202 TCTAACTTGATGTCTCTTTCCATGTA 57.866 34.615 0.00 0.00 0.00 2.29
176 177 8.593679 TCTAACTTGATGTCTCTTTCCATGTAA 58.406 33.333 0.00 0.00 0.00 2.41
177 178 7.678947 AACTTGATGTCTCTTTCCATGTAAG 57.321 36.000 0.00 0.00 0.00 2.34
178 179 6.176183 ACTTGATGTCTCTTTCCATGTAAGG 58.824 40.000 5.32 0.00 0.00 2.69
179 180 5.762179 TGATGTCTCTTTCCATGTAAGGT 57.238 39.130 5.32 0.00 0.00 3.50
180 181 5.491070 TGATGTCTCTTTCCATGTAAGGTG 58.509 41.667 5.32 0.00 0.00 4.00
181 182 4.974645 TGTCTCTTTCCATGTAAGGTGT 57.025 40.909 5.32 0.00 0.00 4.16
182 183 4.641396 TGTCTCTTTCCATGTAAGGTGTG 58.359 43.478 5.32 0.00 0.00 3.82
183 184 3.437049 GTCTCTTTCCATGTAAGGTGTGC 59.563 47.826 5.32 0.00 0.00 4.57
184 185 3.072330 TCTCTTTCCATGTAAGGTGTGCA 59.928 43.478 5.32 0.00 0.00 4.57
185 186 3.411446 TCTTTCCATGTAAGGTGTGCAG 58.589 45.455 0.00 0.00 0.00 4.41
186 187 1.533625 TTCCATGTAAGGTGTGCAGC 58.466 50.000 0.00 0.00 0.00 5.25
187 188 0.673333 TCCATGTAAGGTGTGCAGCG 60.673 55.000 0.00 0.00 0.00 5.18
188 189 0.673333 CCATGTAAGGTGTGCAGCGA 60.673 55.000 0.00 0.00 0.00 4.93
189 190 0.723414 CATGTAAGGTGTGCAGCGAG 59.277 55.000 0.00 0.00 0.00 5.03
190 191 0.391661 ATGTAAGGTGTGCAGCGAGG 60.392 55.000 0.00 0.00 0.00 4.63
191 192 1.004918 GTAAGGTGTGCAGCGAGGT 60.005 57.895 0.00 0.00 0.00 3.85
192 193 0.602905 GTAAGGTGTGCAGCGAGGTT 60.603 55.000 0.00 0.00 0.00 3.50
193 194 0.107831 TAAGGTGTGCAGCGAGGTTT 59.892 50.000 0.00 0.00 0.00 3.27
194 195 1.166531 AAGGTGTGCAGCGAGGTTTC 61.167 55.000 0.00 0.00 0.00 2.78
195 196 1.598130 GGTGTGCAGCGAGGTTTCT 60.598 57.895 0.00 0.00 0.00 2.52
196 197 0.320421 GGTGTGCAGCGAGGTTTCTA 60.320 55.000 0.00 0.00 0.00 2.10
197 198 1.676014 GGTGTGCAGCGAGGTTTCTAT 60.676 52.381 0.00 0.00 0.00 1.98
198 199 1.661112 GTGTGCAGCGAGGTTTCTATC 59.339 52.381 0.00 0.00 0.00 2.08
199 200 1.291132 GTGCAGCGAGGTTTCTATCC 58.709 55.000 0.00 0.00 0.00 2.59
200 201 0.179111 TGCAGCGAGGTTTCTATCCG 60.179 55.000 0.00 0.00 0.00 4.18
201 202 0.102481 GCAGCGAGGTTTCTATCCGA 59.898 55.000 0.00 0.00 0.00 4.55
202 203 1.866063 GCAGCGAGGTTTCTATCCGAG 60.866 57.143 0.00 0.00 0.00 4.63
203 204 0.386113 AGCGAGGTTTCTATCCGAGC 59.614 55.000 0.00 0.00 34.44 5.03
204 205 0.386113 GCGAGGTTTCTATCCGAGCT 59.614 55.000 0.00 0.00 32.68 4.09
205 206 1.600912 GCGAGGTTTCTATCCGAGCTC 60.601 57.143 2.73 2.73 35.25 4.09
206 207 1.950909 CGAGGTTTCTATCCGAGCTCT 59.049 52.381 12.85 0.00 36.16 4.09
207 208 2.031508 CGAGGTTTCTATCCGAGCTCTC 60.032 54.545 12.85 0.00 36.16 3.20
462 463 6.524101 ACTGAAGTAGAGAAGAGGTTGATC 57.476 41.667 0.00 0.00 0.00 2.92
463 464 6.252995 ACTGAAGTAGAGAAGAGGTTGATCT 58.747 40.000 0.00 0.00 0.00 2.75
464 465 7.406916 ACTGAAGTAGAGAAGAGGTTGATCTA 58.593 38.462 0.00 0.00 0.00 1.98
465 466 7.891183 ACTGAAGTAGAGAAGAGGTTGATCTAA 59.109 37.037 0.00 0.00 0.00 2.10
466 467 8.057536 TGAAGTAGAGAAGAGGTTGATCTAAC 57.942 38.462 0.00 0.00 38.60 2.34
467 468 7.891183 TGAAGTAGAGAAGAGGTTGATCTAACT 59.109 37.037 0.00 0.00 39.31 2.24
468 469 7.875327 AGTAGAGAAGAGGTTGATCTAACTC 57.125 40.000 13.60 13.60 39.31 3.01
469 470 7.639378 AGTAGAGAAGAGGTTGATCTAACTCT 58.361 38.462 17.66 17.66 41.58 3.24
470 471 8.774183 AGTAGAGAAGAGGTTGATCTAACTCTA 58.226 37.037 22.51 6.38 40.44 2.43
471 472 9.052759 GTAGAGAAGAGGTTGATCTAACTCTAG 57.947 40.741 22.51 0.00 41.11 2.43
472 473 7.060421 AGAGAAGAGGTTGATCTAACTCTAGG 58.940 42.308 22.51 0.00 39.35 3.02
473 474 5.596772 AGAAGAGGTTGATCTAACTCTAGGC 59.403 44.000 22.51 15.34 39.31 3.93
474 475 4.219919 AGAGGTTGATCTAACTCTAGGCC 58.780 47.826 21.19 0.00 39.31 5.19
475 476 4.078863 AGAGGTTGATCTAACTCTAGGCCT 60.079 45.833 21.19 11.78 39.31 5.19
476 477 5.134679 AGAGGTTGATCTAACTCTAGGCCTA 59.865 44.000 21.19 13.09 39.31 3.93
477 478 5.141910 AGGTTGATCTAACTCTAGGCCTAC 58.858 45.833 8.91 0.00 39.31 3.18
478 479 4.023021 GGTTGATCTAACTCTAGGCCTACG 60.023 50.000 8.91 5.55 39.31 3.51
479 480 3.752665 TGATCTAACTCTAGGCCTACGG 58.247 50.000 8.91 7.03 0.00 4.02
480 481 7.505396 GTTGATCTAACTCTAGGCCTACGGC 62.505 52.000 8.91 0.00 41.10 5.68
489 490 4.637771 GCCTACGGCCATGTTTCT 57.362 55.556 2.24 0.00 44.06 2.52
490 491 3.772619 GCCTACGGCCATGTTTCTA 57.227 52.632 2.24 0.00 44.06 2.10
491 492 2.256117 GCCTACGGCCATGTTTCTAT 57.744 50.000 2.24 0.00 44.06 1.98
492 493 1.873591 GCCTACGGCCATGTTTCTATG 59.126 52.381 2.24 0.00 44.06 2.23
493 494 1.873591 CCTACGGCCATGTTTCTATGC 59.126 52.381 2.24 0.00 0.00 3.14
494 495 2.560504 CTACGGCCATGTTTCTATGCA 58.439 47.619 2.24 0.00 0.00 3.96
495 496 2.057137 ACGGCCATGTTTCTATGCAT 57.943 45.000 3.79 3.79 0.00 3.96
496 497 1.949525 ACGGCCATGTTTCTATGCATC 59.050 47.619 0.19 0.00 0.00 3.91
497 498 1.069703 CGGCCATGTTTCTATGCATCG 60.070 52.381 0.19 0.00 0.00 3.84
498 499 1.267806 GGCCATGTTTCTATGCATCGG 59.732 52.381 0.19 0.00 0.00 4.18
499 500 2.221169 GCCATGTTTCTATGCATCGGA 58.779 47.619 0.19 0.00 0.00 4.55
500 501 2.618241 GCCATGTTTCTATGCATCGGAA 59.382 45.455 0.19 6.70 0.00 4.30
501 502 3.254166 GCCATGTTTCTATGCATCGGAAT 59.746 43.478 0.19 0.00 0.00 3.01
502 503 4.455533 GCCATGTTTCTATGCATCGGAATA 59.544 41.667 0.19 0.00 0.00 1.75
503 504 5.124457 GCCATGTTTCTATGCATCGGAATAT 59.876 40.000 0.19 0.00 0.00 1.28
504 505 6.349611 GCCATGTTTCTATGCATCGGAATATT 60.350 38.462 0.19 0.00 0.00 1.28
505 506 7.025365 CCATGTTTCTATGCATCGGAATATTG 58.975 38.462 0.19 7.07 0.00 1.90
506 507 7.094677 CCATGTTTCTATGCATCGGAATATTGA 60.095 37.037 0.19 0.00 0.00 2.57
507 508 7.800155 TGTTTCTATGCATCGGAATATTGAA 57.200 32.000 0.19 0.00 0.00 2.69
508 509 7.864686 TGTTTCTATGCATCGGAATATTGAAG 58.135 34.615 0.19 0.00 0.00 3.02
509 510 7.498900 TGTTTCTATGCATCGGAATATTGAAGT 59.501 33.333 0.19 0.00 0.00 3.01
510 511 8.345565 GTTTCTATGCATCGGAATATTGAAGTT 58.654 33.333 0.19 0.00 0.00 2.66
511 512 8.450578 TTCTATGCATCGGAATATTGAAGTTT 57.549 30.769 0.19 0.00 0.00 2.66
512 513 8.087982 TCTATGCATCGGAATATTGAAGTTTC 57.912 34.615 0.19 0.00 0.00 2.78
513 514 6.698008 ATGCATCGGAATATTGAAGTTTCA 57.302 33.333 0.00 0.00 34.92 2.69
527 528 7.565450 TTGAAGTTTCAATTTACATCGCATG 57.435 32.000 3.28 0.00 41.88 4.06
528 529 5.572511 TGAAGTTTCAATTTACATCGCATGC 59.427 36.000 7.91 7.91 33.55 4.06
529 530 5.314923 AGTTTCAATTTACATCGCATGCT 57.685 34.783 17.13 0.00 0.00 3.79
530 531 5.335127 AGTTTCAATTTACATCGCATGCTC 58.665 37.500 17.13 0.00 0.00 4.26
531 532 3.590720 TCAATTTACATCGCATGCTCG 57.409 42.857 17.13 6.22 0.00 5.03
532 533 2.039085 CAATTTACATCGCATGCTCGC 58.961 47.619 17.13 0.00 0.00 5.03
533 534 1.298602 ATTTACATCGCATGCTCGCA 58.701 45.000 17.13 0.00 0.00 5.10
534 535 1.298602 TTTACATCGCATGCTCGCAT 58.701 45.000 17.13 0.00 37.08 4.73
535 536 1.298602 TTACATCGCATGCTCGCATT 58.701 45.000 17.13 0.00 33.90 3.56
536 537 2.147436 TACATCGCATGCTCGCATTA 57.853 45.000 17.13 0.00 33.90 1.90
537 538 1.516161 ACATCGCATGCTCGCATTAT 58.484 45.000 17.13 0.00 33.90 1.28
538 539 1.875514 ACATCGCATGCTCGCATTATT 59.124 42.857 17.13 0.00 33.90 1.40
539 540 2.096069 ACATCGCATGCTCGCATTATTC 60.096 45.455 17.13 0.00 33.90 1.75
540 541 1.869774 TCGCATGCTCGCATTATTCT 58.130 45.000 17.13 0.00 33.90 2.40
541 542 2.212652 TCGCATGCTCGCATTATTCTT 58.787 42.857 17.13 0.00 33.90 2.52
542 543 2.032636 TCGCATGCTCGCATTATTCTTG 60.033 45.455 17.13 0.00 33.90 3.02
543 544 2.032636 CGCATGCTCGCATTATTCTTGA 60.033 45.455 17.13 0.00 33.90 3.02
544 545 3.546616 CGCATGCTCGCATTATTCTTGAA 60.547 43.478 17.13 0.00 33.90 2.69
545 546 4.543692 GCATGCTCGCATTATTCTTGAAT 58.456 39.130 11.37 1.35 33.90 2.57
546 547 4.980434 GCATGCTCGCATTATTCTTGAATT 59.020 37.500 11.37 0.00 33.90 2.17
547 548 5.461078 GCATGCTCGCATTATTCTTGAATTT 59.539 36.000 11.37 0.00 33.90 1.82
548 549 6.019318 GCATGCTCGCATTATTCTTGAATTTT 60.019 34.615 11.37 0.00 33.90 1.82
549 550 7.464977 GCATGCTCGCATTATTCTTGAATTTTT 60.465 33.333 11.37 0.00 33.90 1.94
591 592 9.853555 ATATTCGCTCTAATATTGAAGTCTCAG 57.146 33.333 0.00 0.00 29.60 3.35
592 593 6.701145 TCGCTCTAATATTGAAGTCTCAGT 57.299 37.500 0.00 0.00 31.69 3.41
593 594 7.803279 TCGCTCTAATATTGAAGTCTCAGTA 57.197 36.000 0.00 0.00 31.69 2.74
594 595 7.866729 TCGCTCTAATATTGAAGTCTCAGTAG 58.133 38.462 0.00 0.00 31.69 2.57
595 596 7.041030 TCGCTCTAATATTGAAGTCTCAGTAGG 60.041 40.741 0.00 0.00 31.69 3.18
596 597 7.041030 CGCTCTAATATTGAAGTCTCAGTAGGA 60.041 40.741 0.00 0.00 31.69 2.94
597 598 8.802267 GCTCTAATATTGAAGTCTCAGTAGGAT 58.198 37.037 0.00 0.00 31.69 3.24
601 602 5.867903 ATTGAAGTCTCAGTAGGATCTGG 57.132 43.478 0.00 0.00 36.25 3.86
602 603 3.636679 TGAAGTCTCAGTAGGATCTGGG 58.363 50.000 0.00 0.00 37.28 4.45
603 604 2.765689 AGTCTCAGTAGGATCTGGGG 57.234 55.000 0.00 0.00 36.65 4.96
604 605 1.219213 AGTCTCAGTAGGATCTGGGGG 59.781 57.143 0.00 0.00 36.65 5.40
605 606 1.218196 GTCTCAGTAGGATCTGGGGGA 59.782 57.143 0.00 0.00 36.65 4.81
606 607 1.501170 TCTCAGTAGGATCTGGGGGAG 59.499 57.143 0.00 0.00 36.65 4.30
607 608 0.563173 TCAGTAGGATCTGGGGGAGG 59.437 60.000 0.00 0.00 36.25 4.30
608 609 1.124477 CAGTAGGATCTGGGGGAGGC 61.124 65.000 0.00 0.00 0.00 4.70
609 610 2.201490 TAGGATCTGGGGGAGGCG 59.799 66.667 0.00 0.00 0.00 5.52
610 611 3.468390 TAGGATCTGGGGGAGGCGG 62.468 68.421 0.00 0.00 0.00 6.13
613 614 4.172232 ATCTGGGGGAGGCGGCTA 62.172 66.667 13.24 0.00 0.00 3.93
614 615 4.860881 TCTGGGGGAGGCGGCTAG 62.861 72.222 13.24 5.25 0.00 3.42
619 620 3.862991 GGGAGGCGGCTAGGGTTC 61.863 72.222 13.24 0.00 0.00 3.62
620 621 2.764547 GGAGGCGGCTAGGGTTCT 60.765 66.667 13.24 0.00 0.00 3.01
621 622 2.368011 GGAGGCGGCTAGGGTTCTT 61.368 63.158 13.24 0.00 0.00 2.52
622 623 1.153349 GAGGCGGCTAGGGTTCTTG 60.153 63.158 13.24 0.00 0.00 3.02
623 624 2.824489 GGCGGCTAGGGTTCTTGC 60.824 66.667 0.00 0.00 40.23 4.01
624 625 3.195698 GCGGCTAGGGTTCTTGCG 61.196 66.667 0.00 0.00 41.52 4.85
625 626 3.195698 CGGCTAGGGTTCTTGCGC 61.196 66.667 0.00 0.00 41.52 6.09
626 627 2.824489 GGCTAGGGTTCTTGCGCC 60.824 66.667 4.18 0.00 41.52 6.53
627 628 2.824489 GCTAGGGTTCTTGCGCCC 60.824 66.667 4.18 0.00 45.16 6.13
669 670 3.798511 GGGGCCAGGGCACTAGTC 61.799 72.222 16.36 0.00 45.29 2.59
670 671 2.689034 GGGCCAGGGCACTAGTCT 60.689 66.667 16.36 0.00 42.14 3.24
671 672 1.382695 GGGCCAGGGCACTAGTCTA 60.383 63.158 16.36 0.00 42.14 2.59
672 673 0.764752 GGGCCAGGGCACTAGTCTAT 60.765 60.000 16.36 0.00 42.14 1.98
673 674 0.682292 GGCCAGGGCACTAGTCTATC 59.318 60.000 13.10 0.00 44.11 2.08
674 675 0.315568 GCCAGGGCACTAGTCTATCG 59.684 60.000 5.20 0.00 41.49 2.92
675 676 1.693627 CCAGGGCACTAGTCTATCGT 58.306 55.000 0.00 0.00 0.00 3.73
676 677 2.032620 CCAGGGCACTAGTCTATCGTT 58.967 52.381 0.00 0.00 0.00 3.85
677 678 2.431057 CCAGGGCACTAGTCTATCGTTT 59.569 50.000 0.00 0.00 0.00 3.60
678 679 3.635373 CCAGGGCACTAGTCTATCGTTTA 59.365 47.826 0.00 0.00 0.00 2.01
679 680 4.261656 CCAGGGCACTAGTCTATCGTTTAG 60.262 50.000 0.00 0.00 0.00 1.85
680 681 3.318557 AGGGCACTAGTCTATCGTTTAGC 59.681 47.826 0.00 0.00 0.00 3.09
681 682 3.552478 GGGCACTAGTCTATCGTTTAGCC 60.552 52.174 0.00 0.00 37.69 3.93
682 683 3.298317 GCACTAGTCTATCGTTTAGCCG 58.702 50.000 0.00 0.00 0.00 5.52
683 684 3.298317 CACTAGTCTATCGTTTAGCCGC 58.702 50.000 0.00 0.00 0.00 6.53
684 685 3.003482 CACTAGTCTATCGTTTAGCCGCT 59.997 47.826 0.00 0.00 0.00 5.52
685 686 4.212847 CACTAGTCTATCGTTTAGCCGCTA 59.787 45.833 0.00 0.00 0.00 4.26
686 687 3.900388 AGTCTATCGTTTAGCCGCTAG 57.100 47.619 0.00 0.00 0.00 3.42
687 688 3.212685 AGTCTATCGTTTAGCCGCTAGT 58.787 45.455 0.00 0.00 30.72 2.57
688 689 3.631227 AGTCTATCGTTTAGCCGCTAGTT 59.369 43.478 0.00 0.00 30.72 2.24
689 690 4.097589 AGTCTATCGTTTAGCCGCTAGTTT 59.902 41.667 0.00 0.00 30.72 2.66
690 691 5.297776 AGTCTATCGTTTAGCCGCTAGTTTA 59.702 40.000 0.00 0.00 30.72 2.01
691 692 5.973565 GTCTATCGTTTAGCCGCTAGTTTAA 59.026 40.000 0.00 0.00 30.72 1.52
692 693 6.142002 GTCTATCGTTTAGCCGCTAGTTTAAG 59.858 42.308 0.00 0.00 30.72 1.85
693 694 4.178545 TCGTTTAGCCGCTAGTTTAAGT 57.821 40.909 0.00 0.00 0.00 2.24
694 695 4.559153 TCGTTTAGCCGCTAGTTTAAGTT 58.441 39.130 0.00 0.00 0.00 2.66
695 696 4.386652 TCGTTTAGCCGCTAGTTTAAGTTG 59.613 41.667 0.00 0.00 0.00 3.16
696 697 4.151157 CGTTTAGCCGCTAGTTTAAGTTGT 59.849 41.667 0.00 0.00 0.00 3.32
697 698 5.333568 CGTTTAGCCGCTAGTTTAAGTTGTT 60.334 40.000 0.00 0.00 0.00 2.83
698 699 5.600908 TTAGCCGCTAGTTTAAGTTGTTG 57.399 39.130 0.00 0.00 0.00 3.33
699 700 2.225727 AGCCGCTAGTTTAAGTTGTTGC 59.774 45.455 0.00 0.00 0.00 4.17
700 701 2.225727 GCCGCTAGTTTAAGTTGTTGCT 59.774 45.455 0.00 0.00 0.00 3.91
701 702 3.434299 GCCGCTAGTTTAAGTTGTTGCTA 59.566 43.478 0.00 0.00 0.00 3.49
702 703 4.094442 GCCGCTAGTTTAAGTTGTTGCTAT 59.906 41.667 0.00 0.00 0.00 2.97
703 704 5.391629 GCCGCTAGTTTAAGTTGTTGCTATT 60.392 40.000 0.00 0.00 0.00 1.73
704 705 6.608610 CCGCTAGTTTAAGTTGTTGCTATTT 58.391 36.000 0.00 0.00 0.00 1.40
705 706 6.741358 CCGCTAGTTTAAGTTGTTGCTATTTC 59.259 38.462 0.00 0.00 0.00 2.17
706 707 7.360946 CCGCTAGTTTAAGTTGTTGCTATTTCT 60.361 37.037 0.00 0.00 0.00 2.52
707 708 7.478667 CGCTAGTTTAAGTTGTTGCTATTTCTG 59.521 37.037 0.00 0.00 0.00 3.02
708 709 8.290325 GCTAGTTTAAGTTGTTGCTATTTCTGT 58.710 33.333 0.00 0.00 0.00 3.41
709 710 9.813080 CTAGTTTAAGTTGTTGCTATTTCTGTC 57.187 33.333 0.00 0.00 0.00 3.51
710 711 8.220755 AGTTTAAGTTGTTGCTATTTCTGTCA 57.779 30.769 0.00 0.00 0.00 3.58
711 712 8.682710 AGTTTAAGTTGTTGCTATTTCTGTCAA 58.317 29.630 0.00 0.00 0.00 3.18
712 713 9.463443 GTTTAAGTTGTTGCTATTTCTGTCAAT 57.537 29.630 0.00 0.00 0.00 2.57
717 718 9.683069 AGTTGTTGCTATTTCTGTCAATAAAAG 57.317 29.630 0.00 0.00 0.00 2.27
718 719 9.463443 GTTGTTGCTATTTCTGTCAATAAAAGT 57.537 29.630 0.00 0.00 0.00 2.66
730 731 9.513906 TCTGTCAATAAAAGTAAATCATGTGGA 57.486 29.630 0.00 0.00 0.00 4.02
739 740 8.408043 AAAGTAAATCATGTGGAAATGAGACA 57.592 30.769 0.00 0.00 39.84 3.41
740 741 7.383102 AGTAAATCATGTGGAAATGAGACAC 57.617 36.000 0.00 0.00 39.84 3.67
741 742 4.952262 AATCATGTGGAAATGAGACACG 57.048 40.909 0.00 0.00 39.84 4.49
742 743 2.076100 TCATGTGGAAATGAGACACGC 58.924 47.619 0.00 0.00 37.92 5.34
743 744 1.078709 ATGTGGAAATGAGACACGCG 58.921 50.000 3.53 3.53 37.92 6.01
744 745 0.032815 TGTGGAAATGAGACACGCGA 59.967 50.000 15.93 0.00 37.92 5.87
745 746 1.144969 GTGGAAATGAGACACGCGAA 58.855 50.000 15.93 0.00 0.00 4.70
746 747 1.126846 GTGGAAATGAGACACGCGAAG 59.873 52.381 15.93 7.57 0.00 3.79
747 748 0.721718 GGAAATGAGACACGCGAAGG 59.278 55.000 15.93 4.07 0.00 3.46
748 749 1.429463 GAAATGAGACACGCGAAGGT 58.571 50.000 15.93 7.99 0.00 3.50
749 750 2.602878 GAAATGAGACACGCGAAGGTA 58.397 47.619 15.93 0.00 0.00 3.08
750 751 2.279582 AATGAGACACGCGAAGGTAG 57.720 50.000 15.93 0.00 0.00 3.18
751 752 1.174783 ATGAGACACGCGAAGGTAGT 58.825 50.000 15.93 0.39 0.00 2.73
752 753 0.956633 TGAGACACGCGAAGGTAGTT 59.043 50.000 15.93 0.00 0.00 2.24
753 754 1.335597 TGAGACACGCGAAGGTAGTTG 60.336 52.381 15.93 0.00 0.00 3.16
754 755 0.672342 AGACACGCGAAGGTAGTTGT 59.328 50.000 15.93 3.11 0.00 3.32
755 756 1.881973 AGACACGCGAAGGTAGTTGTA 59.118 47.619 15.93 0.00 0.00 2.41
756 757 2.095364 AGACACGCGAAGGTAGTTGTAG 60.095 50.000 15.93 0.00 0.00 2.74
757 758 1.881973 ACACGCGAAGGTAGTTGTAGA 59.118 47.619 15.93 0.00 0.00 2.59
1086 1096 0.036732 TCACCAACTGCATCCACCTC 59.963 55.000 0.00 0.00 0.00 3.85
2088 2146 2.969628 TTCTCAAGAGGAAGATCGGC 57.030 50.000 0.00 0.00 0.00 5.54
2229 2287 1.227527 TATCGCGCACAATCTGGGG 60.228 57.895 8.75 0.00 33.31 4.96
2286 2344 2.119801 ACATTGACCTGGACAGCATC 57.880 50.000 0.00 0.00 0.00 3.91
2322 2380 1.985447 ATGTGATGCTTTCGCCGCTG 61.985 55.000 0.00 0.00 33.71 5.18
2412 2470 3.000080 GAAGGTTGTCGAGCGTGCG 62.000 63.158 0.00 0.00 0.00 5.34
2531 2589 3.542712 ATGCGACATTGTCAACACTTC 57.457 42.857 16.61 0.00 32.09 3.01
2852 3252 8.437360 TGTGAAGCTGAATTAACGATATCATT 57.563 30.769 3.12 0.00 0.00 2.57
2905 3305 2.233431 TGTTCCCATTTTGGCATACTGC 59.767 45.455 0.00 0.00 44.08 4.40
2920 3320 1.876322 ACTGCACAGAAGAGTTCAGC 58.124 50.000 4.31 0.00 36.43 4.26
2925 3325 2.222911 GCACAGAAGAGTTCAGCAAGTC 59.777 50.000 0.00 0.00 32.65 3.01
2927 3327 3.873361 CACAGAAGAGTTCAGCAAGTCAA 59.127 43.478 0.00 0.00 34.71 3.18
3014 3417 7.133891 ACACATTCTTGCATTCTAAGTGTAC 57.866 36.000 8.85 0.00 36.09 2.90
3076 3480 6.769341 AGGTTGGTTGTCGTTTCTAATACTTT 59.231 34.615 0.00 0.00 0.00 2.66
3594 4045 3.084039 CCAGCTTGCTCCTGATAAACAA 58.916 45.455 0.00 0.00 32.03 2.83
3684 4141 2.024176 TAGCAAGGAACTCTGGTCCA 57.976 50.000 4.36 0.00 38.49 4.02
3704 4161 3.317149 CCACATGGGTTATCAAGAGCATG 59.683 47.826 0.00 0.00 0.00 4.06
3711 4168 3.624861 GGTTATCAAGAGCATGTGACCAG 59.375 47.826 0.00 0.00 0.00 4.00
3823 4283 2.566833 TACACCAGATGGCCATATGC 57.433 50.000 30.96 14.39 39.32 3.14
3876 4336 8.814038 AAGGATCTAAATGTAGCAAAACTGAT 57.186 30.769 0.00 0.00 0.00 2.90
3960 4420 1.202545 GCTAAAGAGGGACGGGTGATC 60.203 57.143 0.00 0.00 0.00 2.92
3989 4449 3.751767 TTGGCACAGGCAAGATTCT 57.248 47.368 1.59 0.00 42.98 2.40
4022 4482 8.995027 TCCATTTCTGCCTGTATTATTTGTAT 57.005 30.769 0.00 0.00 0.00 2.29
4178 4641 9.777575 GTGGTTTGCGTTTATATGTTAGTATTT 57.222 29.630 0.00 0.00 0.00 1.40
4259 4722 5.586243 TGCTTCTATGCACTGTTAATCTTCC 59.414 40.000 0.00 0.00 38.12 3.46
4275 4738 8.548877 GTTAATCTTCCCTAGGCATGGAATATA 58.451 37.037 2.05 0.00 39.79 0.86
4320 4791 5.800941 TGCTAACAAGTTTAAAACCGTGTTG 59.199 36.000 15.50 9.52 39.25 3.33
4498 5273 4.016444 ACAAGTCCAAAGCTGAAAAGTCA 58.984 39.130 0.00 0.00 0.00 3.41
4598 5376 2.009042 GCGGAGAAGGTGTTGAGGATG 61.009 57.143 0.00 0.00 0.00 3.51
4630 5408 5.767816 ACATTGCTTTAACGAGGTCTTTT 57.232 34.783 0.00 0.00 0.00 2.27
4780 5561 5.014123 TGAAGGTGAGATTATTGAAGTGGGT 59.986 40.000 0.00 0.00 0.00 4.51
4873 5660 2.490903 GGAAGCAGCTTTGTCATCACAT 59.509 45.455 9.62 0.00 30.55 3.21
4966 5759 7.386299 GGTAAGGTATCTCTTGCTCATGTTATG 59.614 40.741 0.00 0.00 31.48 1.90
5176 5982 2.820197 GGTTCAACATGGAGTTCCCTTC 59.180 50.000 0.00 0.00 38.74 3.46
5282 6088 2.367486 GAGCACTACTAGACGGAAGGT 58.633 52.381 0.00 0.00 0.00 3.50
5283 6089 3.539604 GAGCACTACTAGACGGAAGGTA 58.460 50.000 0.00 0.00 0.00 3.08
5284 6090 3.944015 GAGCACTACTAGACGGAAGGTAA 59.056 47.826 0.00 0.00 0.00 2.85
5308 6114 0.322546 GACCTGGGATCACACCAACC 60.323 60.000 0.00 0.00 37.59 3.77
5326 6132 4.445735 CCAACCCAAAACTTCAGTCCTAGA 60.446 45.833 0.00 0.00 0.00 2.43
5384 6191 2.417719 GCTTGGGCTCCATATAAGACG 58.582 52.381 0.00 0.00 31.53 4.18
5400 6207 3.751479 AGACGCATGGCATGATAGTTA 57.249 42.857 30.69 0.00 0.00 2.24
5467 6350 4.848357 CCAGTAACCAAGATCACCATTCT 58.152 43.478 0.00 0.00 0.00 2.40
5499 6382 3.746492 ACCGTTGACTCACTGAAAATAGC 59.254 43.478 0.00 0.00 0.00 2.97
5530 6413 7.598493 TGTATGCTTCCAAAAGACAAAATAAGC 59.402 33.333 0.00 0.00 38.78 3.09
5553 6436 2.054799 ACTGTGGCTTCAAAGGGAGTA 58.945 47.619 0.00 0.00 29.97 2.59
5554 6437 2.644798 ACTGTGGCTTCAAAGGGAGTAT 59.355 45.455 0.00 0.00 29.97 2.12
5580 6463 2.943993 AGAAACGGTAGAGTTCTTCGC 58.056 47.619 0.00 0.00 32.43 4.70
5593 6476 3.372206 AGTTCTTCGCAAAAGGATCATCG 59.628 43.478 0.00 0.00 0.00 3.84
5599 6482 1.739466 GCAAAAGGATCATCGTCAGCA 59.261 47.619 0.00 0.00 0.00 4.41
5623 6507 8.983724 GCATGAGATCTTAGTTTAATACTGTCC 58.016 37.037 0.00 0.00 37.73 4.02
5629 6513 9.374838 GATCTTAGTTTAATACTGTCCGGAAAA 57.625 33.333 5.23 0.00 37.73 2.29
5643 6527 2.097466 CCGGAAAATGGCTGTATGTCAC 59.903 50.000 0.00 0.00 30.59 3.67
5655 6539 2.224185 TGTATGTCACGGGATACATGCC 60.224 50.000 2.39 0.00 37.76 4.40
5672 6556 4.278170 ACATGCCTTTCTCGTTGATCAAAA 59.722 37.500 10.35 0.00 0.00 2.44
5731 6616 8.738645 AGAGTATTTCCACTTCATGTTTATCC 57.261 34.615 0.00 0.00 0.00 2.59
5755 6640 6.398234 TGTCAGCTATACTTTCTCATCCTC 57.602 41.667 0.00 0.00 0.00 3.71
5887 6772 1.486310 TCTCCAAGATAACATGCCGCT 59.514 47.619 0.00 0.00 0.00 5.52
5891 6777 0.107017 AAGATAACATGCCGCTGCCT 60.107 50.000 0.00 0.00 36.33 4.75
5934 6820 4.225942 TGGAGCTAAATTGATCTCTGTGGT 59.774 41.667 0.00 0.00 0.00 4.16
6018 6910 8.734386 ACATGTAGAAGAATGAGAAATTTCCAC 58.266 33.333 14.61 9.82 0.00 4.02
6029 6921 6.252233 TGAGAAATTTCCACCATGTCCATTA 58.748 36.000 14.61 0.00 0.00 1.90
6046 6938 7.610865 TGTCCATTATTTTCCCTGAAATTGTC 58.389 34.615 0.00 0.00 31.34 3.18
6172 7068 9.709495 ACACTTAACCGTTATTACAGATAAACA 57.291 29.630 0.00 0.00 0.00 2.83
6192 7088 1.803334 AAAGCAAATCACGCGAGGTA 58.197 45.000 15.93 0.00 0.00 3.08
6210 7106 4.917385 AGGTACTAAATGCATGTTGTCCA 58.083 39.130 7.26 0.00 36.02 4.02
6217 7113 6.991531 ACTAAATGCATGTTGTCCATTTGTTT 59.008 30.769 14.71 0.00 38.98 2.83
6266 7163 9.793252 CAACATTTAATCTTTGAGTGATTAGGG 57.207 33.333 0.00 0.00 37.59 3.53
6279 7176 6.908593 TGAGTGATTAGGGGGTATATATGCAT 59.091 38.462 3.79 3.79 0.00 3.96
6305 7202 9.809096 TCTGAAAATAAAACTTGTTAACATGCA 57.191 25.926 18.59 0.00 0.00 3.96
6306 7203 9.848172 CTGAAAATAAAACTTGTTAACATGCAC 57.152 29.630 18.59 0.00 0.00 4.57
6349 7248 8.842358 TCTACCACTTGATTCGTTAATTTCTT 57.158 30.769 0.00 0.00 0.00 2.52
6429 7329 2.742372 CGGTCGAAGGGCCACAAG 60.742 66.667 6.18 0.00 0.00 3.16
6448 7351 3.438297 AGCACTACATAGCAGTTACCG 57.562 47.619 0.00 0.00 0.00 4.02
6505 7512 5.104941 TGTGTTATACTCCCTCACCATCTTG 60.105 44.000 0.00 0.00 0.00 3.02
6508 7515 6.386927 TGTTATACTCCCTCACCATCTTGATT 59.613 38.462 0.00 0.00 0.00 2.57
6509 7516 3.641434 ACTCCCTCACCATCTTGATTG 57.359 47.619 0.00 0.00 0.00 2.67
6510 7517 2.915604 ACTCCCTCACCATCTTGATTGT 59.084 45.455 0.00 0.00 0.00 2.71
6512 7519 4.163078 ACTCCCTCACCATCTTGATTGTAG 59.837 45.833 0.00 0.00 0.00 2.74
6513 7520 3.118261 TCCCTCACCATCTTGATTGTAGC 60.118 47.826 0.00 0.00 0.00 3.58
6516 7523 4.095483 CCTCACCATCTTGATTGTAGCAAC 59.905 45.833 0.00 0.00 0.00 4.17
6517 7524 4.009675 TCACCATCTTGATTGTAGCAACC 58.990 43.478 0.00 0.00 0.00 3.77
6519 7526 4.012374 ACCATCTTGATTGTAGCAACCTG 58.988 43.478 0.00 0.00 0.00 4.00
6540 7547 3.006967 TGTGAGGACTGCTTTAGAGTTCC 59.993 47.826 0.00 0.00 0.00 3.62
6575 7582 0.331616 GGTGAGGGCCTTAACCATGT 59.668 55.000 26.31 0.00 32.69 3.21
6610 7617 3.728076 ACAAACTACTCTGCTTCACGA 57.272 42.857 0.00 0.00 0.00 4.35
6690 7709 3.900855 CAGCACATCCTGTCCTGC 58.099 61.111 0.00 0.00 28.36 4.85
6755 7774 2.646719 CTTTGGCACGCACAGCAT 59.353 55.556 0.00 0.00 0.00 3.79
6784 7803 0.811616 GGTAGCTTCCGTGCATGGAG 60.812 60.000 26.16 20.35 39.72 3.86
6789 7808 1.372087 CTTCCGTGCATGGAGCTTCC 61.372 60.000 26.16 0.00 45.94 3.46
6790 7809 3.197790 CCGTGCATGGAGCTTCCG 61.198 66.667 21.08 0.00 45.94 4.30
6791 7810 2.434884 CGTGCATGGAGCTTCCGT 60.435 61.111 0.00 0.00 45.94 4.69
6853 7910 3.049674 ACGCCGCAACACATGGAG 61.050 61.111 0.00 0.00 0.00 3.86
6924 7982 1.992667 TCTTGCGCTCGTTGATGTAAG 59.007 47.619 9.73 0.00 0.00 2.34
6944 8002 1.135170 GCATTCTGCTTCTTGGCTTCC 60.135 52.381 0.00 0.00 40.96 3.46
7083 8164 1.516423 GAACAGGGTCCTCGTAGCC 59.484 63.158 0.00 0.00 37.29 3.93
7098 8179 0.608035 TAGCCCAACCTGCCTTTTCG 60.608 55.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.683334 GAAAGCACCGCGCCACAC 62.683 66.667 0.00 0.00 44.04 3.82
18 19 4.152402 TCGAAGAAGGAAATGAAGCGAAAG 59.848 41.667 0.00 0.00 0.00 2.62
19 20 4.062293 TCGAAGAAGGAAATGAAGCGAAA 58.938 39.130 0.00 0.00 0.00 3.46
20 21 3.659786 TCGAAGAAGGAAATGAAGCGAA 58.340 40.909 0.00 0.00 0.00 4.70
21 22 3.313012 TCGAAGAAGGAAATGAAGCGA 57.687 42.857 0.00 0.00 0.00 4.93
22 23 3.726190 GCTTCGAAGAAGGAAATGAAGCG 60.726 47.826 28.95 0.00 45.77 4.68
24 25 3.433615 ACGCTTCGAAGAAGGAAATGAAG 59.566 43.478 28.95 0.00 45.90 3.02
25 26 3.399330 ACGCTTCGAAGAAGGAAATGAA 58.601 40.909 28.95 0.00 45.90 2.57
26 27 2.993899 GACGCTTCGAAGAAGGAAATGA 59.006 45.455 28.95 0.00 45.90 2.57
27 28 3.375911 GACGCTTCGAAGAAGGAAATG 57.624 47.619 28.95 8.98 45.90 2.32
40 41 1.865340 AGGTTGAAAAGACGACGCTTC 59.135 47.619 0.00 0.00 0.00 3.86
41 42 1.949465 AGGTTGAAAAGACGACGCTT 58.051 45.000 0.00 0.00 0.00 4.68
42 43 1.949465 AAGGTTGAAAAGACGACGCT 58.051 45.000 0.00 0.00 0.00 5.07
43 44 2.157085 CCTAAGGTTGAAAAGACGACGC 59.843 50.000 0.00 0.00 0.00 5.19
44 45 2.157085 GCCTAAGGTTGAAAAGACGACG 59.843 50.000 0.00 0.00 0.00 5.12
45 46 2.483106 GGCCTAAGGTTGAAAAGACGAC 59.517 50.000 0.00 0.00 0.00 4.34
46 47 2.551504 GGGCCTAAGGTTGAAAAGACGA 60.552 50.000 0.84 0.00 0.00 4.20
47 48 1.810755 GGGCCTAAGGTTGAAAAGACG 59.189 52.381 0.84 0.00 0.00 4.18
48 49 2.871453 TGGGCCTAAGGTTGAAAAGAC 58.129 47.619 4.53 0.00 0.00 3.01
49 50 3.181423 ACATGGGCCTAAGGTTGAAAAGA 60.181 43.478 4.53 0.00 0.00 2.52
50 51 3.056607 CACATGGGCCTAAGGTTGAAAAG 60.057 47.826 4.53 0.00 0.00 2.27
51 52 2.896685 CACATGGGCCTAAGGTTGAAAA 59.103 45.455 4.53 0.00 0.00 2.29
52 53 2.524306 CACATGGGCCTAAGGTTGAAA 58.476 47.619 4.53 0.00 0.00 2.69
53 54 1.272425 CCACATGGGCCTAAGGTTGAA 60.272 52.381 4.53 0.00 0.00 2.69
54 55 0.331278 CCACATGGGCCTAAGGTTGA 59.669 55.000 4.53 0.00 0.00 3.18
55 56 0.331278 TCCACATGGGCCTAAGGTTG 59.669 55.000 4.53 0.00 36.21 3.77
56 57 0.331616 GTCCACATGGGCCTAAGGTT 59.668 55.000 4.53 0.00 36.21 3.50
57 58 0.844661 TGTCCACATGGGCCTAAGGT 60.845 55.000 4.53 0.00 39.61 3.50
58 59 0.107017 CTGTCCACATGGGCCTAAGG 60.107 60.000 4.53 0.24 39.61 2.69
59 60 0.107017 CCTGTCCACATGGGCCTAAG 60.107 60.000 4.53 0.00 39.61 2.18
60 61 0.844661 ACCTGTCCACATGGGCCTAA 60.845 55.000 4.53 0.00 39.61 2.69
61 62 1.229820 ACCTGTCCACATGGGCCTA 60.230 57.895 4.53 0.00 39.61 3.93
62 63 2.532715 ACCTGTCCACATGGGCCT 60.533 61.111 4.53 0.00 39.61 5.19
63 64 2.044946 GACCTGTCCACATGGGCC 60.045 66.667 0.00 0.00 39.61 5.80
64 65 0.962356 CTTGACCTGTCCACATGGGC 60.962 60.000 0.00 0.00 41.09 5.36
65 66 0.322816 CCTTGACCTGTCCACATGGG 60.323 60.000 0.00 0.00 35.41 4.00
66 67 0.322816 CCCTTGACCTGTCCACATGG 60.323 60.000 0.00 0.00 0.00 3.66
67 68 0.962356 GCCCTTGACCTGTCCACATG 60.962 60.000 0.00 0.00 0.00 3.21
68 69 1.380302 GCCCTTGACCTGTCCACAT 59.620 57.895 0.00 0.00 0.00 3.21
69 70 2.836154 GCCCTTGACCTGTCCACA 59.164 61.111 0.00 0.00 0.00 4.17
70 71 2.358737 CGCCCTTGACCTGTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
71 72 2.847234 ACGCCCTTGACCTGTCCA 60.847 61.111 0.00 0.00 0.00 4.02
72 73 2.358737 CACGCCCTTGACCTGTCC 60.359 66.667 0.00 0.00 0.00 4.02
73 74 1.961277 CACACGCCCTTGACCTGTC 60.961 63.158 0.00 0.00 0.00 3.51
74 75 2.111043 CACACGCCCTTGACCTGT 59.889 61.111 0.00 0.00 0.00 4.00
75 76 3.357079 GCACACGCCCTTGACCTG 61.357 66.667 0.00 0.00 0.00 4.00
76 77 3.560251 AGCACACGCCCTTGACCT 61.560 61.111 0.00 0.00 39.83 3.85
77 78 3.357079 CAGCACACGCCCTTGACC 61.357 66.667 0.00 0.00 39.83 4.02
78 79 3.357079 CCAGCACACGCCCTTGAC 61.357 66.667 0.00 0.00 39.83 3.18
79 80 3.872603 ACCAGCACACGCCCTTGA 61.873 61.111 0.00 0.00 39.83 3.02
80 81 3.663176 CACCAGCACACGCCCTTG 61.663 66.667 0.00 0.00 39.83 3.61
81 82 4.954970 CCACCAGCACACGCCCTT 62.955 66.667 0.00 0.00 39.83 3.95
86 87 4.248842 TCCACCCACCAGCACACG 62.249 66.667 0.00 0.00 0.00 4.49
87 88 2.594592 GTCCACCCACCAGCACAC 60.595 66.667 0.00 0.00 0.00 3.82
88 89 4.248842 CGTCCACCCACCAGCACA 62.249 66.667 0.00 0.00 0.00 4.57
89 90 1.895020 TATCGTCCACCCACCAGCAC 61.895 60.000 0.00 0.00 0.00 4.40
90 91 1.195442 TTATCGTCCACCCACCAGCA 61.195 55.000 0.00 0.00 0.00 4.41
91 92 0.180406 ATTATCGTCCACCCACCAGC 59.820 55.000 0.00 0.00 0.00 4.85
92 93 1.475034 CCATTATCGTCCACCCACCAG 60.475 57.143 0.00 0.00 0.00 4.00
93 94 0.544223 CCATTATCGTCCACCCACCA 59.456 55.000 0.00 0.00 0.00 4.17
94 95 0.544697 ACCATTATCGTCCACCCACC 59.455 55.000 0.00 0.00 0.00 4.61
95 96 3.764237 ATACCATTATCGTCCACCCAC 57.236 47.619 0.00 0.00 0.00 4.61
96 97 3.712218 TGAATACCATTATCGTCCACCCA 59.288 43.478 0.00 0.00 0.00 4.51
97 98 4.345859 TGAATACCATTATCGTCCACCC 57.654 45.455 0.00 0.00 0.00 4.61
98 99 5.547465 TGATGAATACCATTATCGTCCACC 58.453 41.667 0.00 0.00 35.17 4.61
99 100 6.147821 CCTTGATGAATACCATTATCGTCCAC 59.852 42.308 0.00 0.00 35.17 4.02
100 101 6.183361 ACCTTGATGAATACCATTATCGTCCA 60.183 38.462 0.00 0.00 35.17 4.02
101 102 6.231211 ACCTTGATGAATACCATTATCGTCC 58.769 40.000 0.00 0.00 35.17 4.79
102 103 7.116948 CAGACCTTGATGAATACCATTATCGTC 59.883 40.741 0.00 0.00 35.17 4.20
103 104 6.931281 CAGACCTTGATGAATACCATTATCGT 59.069 38.462 0.00 0.00 35.17 3.73
104 105 6.369890 CCAGACCTTGATGAATACCATTATCG 59.630 42.308 0.00 0.00 35.17 2.92
105 106 7.227156 ACCAGACCTTGATGAATACCATTATC 58.773 38.462 0.00 0.00 35.17 1.75
106 107 7.154191 ACCAGACCTTGATGAATACCATTAT 57.846 36.000 0.00 0.00 35.17 1.28
107 108 6.575244 ACCAGACCTTGATGAATACCATTA 57.425 37.500 0.00 0.00 35.17 1.90
108 109 5.456921 ACCAGACCTTGATGAATACCATT 57.543 39.130 0.00 0.00 35.17 3.16
109 110 5.456921 AACCAGACCTTGATGAATACCAT 57.543 39.130 0.00 0.00 38.43 3.55
110 111 4.927267 AACCAGACCTTGATGAATACCA 57.073 40.909 0.00 0.00 0.00 3.25
111 112 5.105756 CCAAAACCAGACCTTGATGAATACC 60.106 44.000 0.00 0.00 0.00 2.73
112 113 5.622233 GCCAAAACCAGACCTTGATGAATAC 60.622 44.000 0.00 0.00 0.00 1.89
113 114 4.462483 GCCAAAACCAGACCTTGATGAATA 59.538 41.667 0.00 0.00 0.00 1.75
114 115 3.259123 GCCAAAACCAGACCTTGATGAAT 59.741 43.478 0.00 0.00 0.00 2.57
115 116 2.627699 GCCAAAACCAGACCTTGATGAA 59.372 45.455 0.00 0.00 0.00 2.57
116 117 2.158475 AGCCAAAACCAGACCTTGATGA 60.158 45.455 0.00 0.00 0.00 2.92
117 118 2.229784 GAGCCAAAACCAGACCTTGATG 59.770 50.000 0.00 0.00 0.00 3.07
118 119 2.519013 GAGCCAAAACCAGACCTTGAT 58.481 47.619 0.00 0.00 0.00 2.57
119 120 1.478654 GGAGCCAAAACCAGACCTTGA 60.479 52.381 0.00 0.00 0.00 3.02
120 121 0.961753 GGAGCCAAAACCAGACCTTG 59.038 55.000 0.00 0.00 0.00 3.61
121 122 0.537371 CGGAGCCAAAACCAGACCTT 60.537 55.000 0.00 0.00 0.00 3.50
122 123 1.073199 CGGAGCCAAAACCAGACCT 59.927 57.895 0.00 0.00 0.00 3.85
123 124 1.971695 CCGGAGCCAAAACCAGACC 60.972 63.158 0.00 0.00 0.00 3.85
124 125 0.822121 AACCGGAGCCAAAACCAGAC 60.822 55.000 9.46 0.00 0.00 3.51
125 126 0.536460 GAACCGGAGCCAAAACCAGA 60.536 55.000 9.46 0.00 0.00 3.86
126 127 0.821711 TGAACCGGAGCCAAAACCAG 60.822 55.000 9.46 0.00 0.00 4.00
127 128 0.821711 CTGAACCGGAGCCAAAACCA 60.822 55.000 9.46 0.00 0.00 3.67
128 129 0.822121 ACTGAACCGGAGCCAAAACC 60.822 55.000 9.46 0.00 0.00 3.27
129 130 1.001706 GAACTGAACCGGAGCCAAAAC 60.002 52.381 9.46 0.00 0.00 2.43
130 131 1.133915 AGAACTGAACCGGAGCCAAAA 60.134 47.619 9.46 0.00 0.00 2.44
131 132 0.472471 AGAACTGAACCGGAGCCAAA 59.528 50.000 9.46 0.00 0.00 3.28
132 133 0.034896 GAGAACTGAACCGGAGCCAA 59.965 55.000 9.46 0.00 0.00 4.52
133 134 0.832135 AGAGAACTGAACCGGAGCCA 60.832 55.000 9.46 1.19 0.00 4.75
134 135 1.183549 TAGAGAACTGAACCGGAGCC 58.816 55.000 9.46 0.00 0.00 4.70
135 136 2.231721 AGTTAGAGAACTGAACCGGAGC 59.768 50.000 9.46 0.00 44.50 4.70
136 137 4.022242 TCAAGTTAGAGAACTGAACCGGAG 60.022 45.833 9.46 0.00 45.50 4.63
137 138 3.893200 TCAAGTTAGAGAACTGAACCGGA 59.107 43.478 9.46 0.00 45.50 5.14
138 139 4.252971 TCAAGTTAGAGAACTGAACCGG 57.747 45.455 0.00 0.00 45.50 5.28
139 140 5.230942 ACATCAAGTTAGAGAACTGAACCG 58.769 41.667 0.00 0.00 45.50 4.44
140 141 6.459923 AGACATCAAGTTAGAGAACTGAACC 58.540 40.000 0.00 0.00 45.50 3.62
141 142 7.375053 AGAGACATCAAGTTAGAGAACTGAAC 58.625 38.462 0.00 0.00 45.50 3.18
142 143 7.531857 AGAGACATCAAGTTAGAGAACTGAA 57.468 36.000 0.00 0.00 45.50 3.02
143 144 7.531857 AAGAGACATCAAGTTAGAGAACTGA 57.468 36.000 0.00 0.00 45.50 3.41
144 145 7.330700 GGAAAGAGACATCAAGTTAGAGAACTG 59.669 40.741 0.00 0.00 45.50 3.16
146 147 7.155328 TGGAAAGAGACATCAAGTTAGAGAAC 58.845 38.462 0.00 0.00 35.64 3.01
147 148 7.303182 TGGAAAGAGACATCAAGTTAGAGAA 57.697 36.000 0.00 0.00 0.00 2.87
148 149 6.918067 TGGAAAGAGACATCAAGTTAGAGA 57.082 37.500 0.00 0.00 0.00 3.10
149 150 7.102346 ACATGGAAAGAGACATCAAGTTAGAG 58.898 38.462 0.00 0.00 0.00 2.43
150 151 7.009179 ACATGGAAAGAGACATCAAGTTAGA 57.991 36.000 0.00 0.00 0.00 2.10
151 152 8.777865 TTACATGGAAAGAGACATCAAGTTAG 57.222 34.615 0.00 0.00 0.00 2.34
152 153 7.824289 CCTTACATGGAAAGAGACATCAAGTTA 59.176 37.037 10.69 0.00 0.00 2.24
153 154 6.656693 CCTTACATGGAAAGAGACATCAAGTT 59.343 38.462 10.69 0.00 0.00 2.66
154 155 6.176183 CCTTACATGGAAAGAGACATCAAGT 58.824 40.000 10.69 0.00 0.00 3.16
155 156 6.093219 CACCTTACATGGAAAGAGACATCAAG 59.907 42.308 10.69 0.00 0.00 3.02
156 157 5.939883 CACCTTACATGGAAAGAGACATCAA 59.060 40.000 10.69 0.00 0.00 2.57
157 158 5.013079 ACACCTTACATGGAAAGAGACATCA 59.987 40.000 10.69 0.00 0.00 3.07
158 159 5.352569 CACACCTTACATGGAAAGAGACATC 59.647 44.000 10.69 0.00 0.00 3.06
159 160 5.248640 CACACCTTACATGGAAAGAGACAT 58.751 41.667 10.69 0.00 0.00 3.06
160 161 4.641396 CACACCTTACATGGAAAGAGACA 58.359 43.478 10.69 0.00 0.00 3.41
161 162 3.437049 GCACACCTTACATGGAAAGAGAC 59.563 47.826 10.69 0.00 0.00 3.36
162 163 3.072330 TGCACACCTTACATGGAAAGAGA 59.928 43.478 10.69 0.00 0.00 3.10
163 164 3.411446 TGCACACCTTACATGGAAAGAG 58.589 45.455 10.69 0.00 0.00 2.85
164 165 3.411446 CTGCACACCTTACATGGAAAGA 58.589 45.455 10.69 0.00 0.00 2.52
165 166 2.095059 GCTGCACACCTTACATGGAAAG 60.095 50.000 0.00 0.06 0.00 2.62
166 167 1.885887 GCTGCACACCTTACATGGAAA 59.114 47.619 0.00 0.00 0.00 3.13
167 168 1.533625 GCTGCACACCTTACATGGAA 58.466 50.000 0.00 0.00 0.00 3.53
168 169 0.673333 CGCTGCACACCTTACATGGA 60.673 55.000 0.00 0.00 0.00 3.41
169 170 0.673333 TCGCTGCACACCTTACATGG 60.673 55.000 0.00 0.00 0.00 3.66
170 171 0.723414 CTCGCTGCACACCTTACATG 59.277 55.000 0.00 0.00 0.00 3.21
171 172 0.391661 CCTCGCTGCACACCTTACAT 60.392 55.000 0.00 0.00 0.00 2.29
172 173 1.005037 CCTCGCTGCACACCTTACA 60.005 57.895 0.00 0.00 0.00 2.41
173 174 0.602905 AACCTCGCTGCACACCTTAC 60.603 55.000 0.00 0.00 0.00 2.34
174 175 0.107831 AAACCTCGCTGCACACCTTA 59.892 50.000 0.00 0.00 0.00 2.69
175 176 1.152963 AAACCTCGCTGCACACCTT 60.153 52.632 0.00 0.00 0.00 3.50
176 177 1.598130 GAAACCTCGCTGCACACCT 60.598 57.895 0.00 0.00 0.00 4.00
177 178 0.320421 TAGAAACCTCGCTGCACACC 60.320 55.000 0.00 0.00 0.00 4.16
178 179 1.661112 GATAGAAACCTCGCTGCACAC 59.339 52.381 0.00 0.00 0.00 3.82
179 180 1.405526 GGATAGAAACCTCGCTGCACA 60.406 52.381 0.00 0.00 0.00 4.57
180 181 1.291132 GGATAGAAACCTCGCTGCAC 58.709 55.000 0.00 0.00 0.00 4.57
181 182 0.179111 CGGATAGAAACCTCGCTGCA 60.179 55.000 0.00 0.00 0.00 4.41
182 183 0.102481 TCGGATAGAAACCTCGCTGC 59.898 55.000 0.00 0.00 0.00 5.25
183 184 1.866063 GCTCGGATAGAAACCTCGCTG 60.866 57.143 0.00 0.00 0.00 5.18
184 185 0.386113 GCTCGGATAGAAACCTCGCT 59.614 55.000 0.00 0.00 0.00 4.93
185 186 0.386113 AGCTCGGATAGAAACCTCGC 59.614 55.000 0.00 0.00 0.00 5.03
186 187 1.950909 AGAGCTCGGATAGAAACCTCG 59.049 52.381 8.37 0.00 0.00 4.63
187 188 3.636282 GAGAGCTCGGATAGAAACCTC 57.364 52.381 8.37 0.00 0.00 3.85
433 434 5.222379 ACCTCTTCTCTACTTCAGTAGGGTT 60.222 44.000 12.68 0.00 46.55 4.11
434 435 4.292836 ACCTCTTCTCTACTTCAGTAGGGT 59.707 45.833 12.68 8.58 46.55 4.34
436 437 5.946972 TCAACCTCTTCTCTACTTCAGTAGG 59.053 44.000 13.02 5.45 46.01 3.18
438 439 7.406916 AGATCAACCTCTTCTCTACTTCAGTA 58.593 38.462 0.00 0.00 0.00 2.74
439 440 6.252995 AGATCAACCTCTTCTCTACTTCAGT 58.747 40.000 0.00 0.00 0.00 3.41
440 441 6.773976 AGATCAACCTCTTCTCTACTTCAG 57.226 41.667 0.00 0.00 0.00 3.02
441 442 7.891183 AGTTAGATCAACCTCTTCTCTACTTCA 59.109 37.037 0.00 0.00 37.93 3.02
442 443 8.288689 AGTTAGATCAACCTCTTCTCTACTTC 57.711 38.462 0.00 0.00 37.93 3.01
443 444 8.113462 AGAGTTAGATCAACCTCTTCTCTACTT 58.887 37.037 0.00 0.00 37.93 2.24
444 445 7.639378 AGAGTTAGATCAACCTCTTCTCTACT 58.361 38.462 0.00 0.00 37.93 2.57
445 446 7.875327 AGAGTTAGATCAACCTCTTCTCTAC 57.125 40.000 0.00 0.00 37.93 2.59
446 447 8.215050 CCTAGAGTTAGATCAACCTCTTCTCTA 58.785 40.741 11.70 0.00 37.93 2.43
447 448 7.060421 CCTAGAGTTAGATCAACCTCTTCTCT 58.940 42.308 11.70 0.00 37.93 3.10
448 449 6.238925 GCCTAGAGTTAGATCAACCTCTTCTC 60.239 46.154 11.70 0.00 37.93 2.87
449 450 5.596772 GCCTAGAGTTAGATCAACCTCTTCT 59.403 44.000 11.70 7.57 37.93 2.85
450 451 5.221362 GGCCTAGAGTTAGATCAACCTCTTC 60.221 48.000 11.70 1.98 37.93 2.87
451 452 4.651962 GGCCTAGAGTTAGATCAACCTCTT 59.348 45.833 11.70 0.60 37.93 2.85
452 453 4.078863 AGGCCTAGAGTTAGATCAACCTCT 60.079 45.833 1.29 11.33 37.93 3.69
453 454 4.219919 AGGCCTAGAGTTAGATCAACCTC 58.780 47.826 1.29 0.00 37.93 3.85
454 455 4.273300 AGGCCTAGAGTTAGATCAACCT 57.727 45.455 1.29 1.04 37.93 3.50
455 456 4.023021 CGTAGGCCTAGAGTTAGATCAACC 60.023 50.000 14.38 0.00 37.93 3.77
456 457 4.023021 CCGTAGGCCTAGAGTTAGATCAAC 60.023 50.000 14.38 0.00 46.14 3.18
457 458 4.142790 CCGTAGGCCTAGAGTTAGATCAA 58.857 47.826 14.38 0.00 46.14 2.57
458 459 3.752665 CCGTAGGCCTAGAGTTAGATCA 58.247 50.000 14.38 0.00 46.14 2.92
474 475 2.560504 TGCATAGAAACATGGCCGTAG 58.439 47.619 0.00 0.00 0.00 3.51
475 476 2.700722 TGCATAGAAACATGGCCGTA 57.299 45.000 0.00 0.00 0.00 4.02
476 477 1.949525 GATGCATAGAAACATGGCCGT 59.050 47.619 0.00 0.00 0.00 5.68
477 478 1.069703 CGATGCATAGAAACATGGCCG 60.070 52.381 0.00 0.00 0.00 6.13
478 479 1.267806 CCGATGCATAGAAACATGGCC 59.732 52.381 8.55 0.00 0.00 5.36
479 480 2.221169 TCCGATGCATAGAAACATGGC 58.779 47.619 8.55 0.00 0.00 4.40
480 481 6.748333 ATATTCCGATGCATAGAAACATGG 57.252 37.500 13.88 1.35 0.00 3.66
481 482 7.809665 TCAATATTCCGATGCATAGAAACATG 58.190 34.615 13.88 12.33 0.00 3.21
482 483 7.984422 TCAATATTCCGATGCATAGAAACAT 57.016 32.000 13.88 8.76 0.00 2.71
483 484 7.498900 ACTTCAATATTCCGATGCATAGAAACA 59.501 33.333 13.88 7.19 0.00 2.83
484 485 7.865707 ACTTCAATATTCCGATGCATAGAAAC 58.134 34.615 13.88 0.00 0.00 2.78
485 486 8.450578 AACTTCAATATTCCGATGCATAGAAA 57.549 30.769 13.88 0.00 0.00 2.52
486 487 8.450578 AAACTTCAATATTCCGATGCATAGAA 57.549 30.769 8.55 10.90 0.00 2.10
487 488 7.714813 TGAAACTTCAATATTCCGATGCATAGA 59.285 33.333 8.55 1.32 33.55 1.98
488 489 7.864686 TGAAACTTCAATATTCCGATGCATAG 58.135 34.615 0.00 0.00 33.55 2.23
489 490 7.800155 TGAAACTTCAATATTCCGATGCATA 57.200 32.000 0.00 0.00 33.55 3.14
490 491 6.698008 TGAAACTTCAATATTCCGATGCAT 57.302 33.333 0.00 0.00 33.55 3.96
491 492 6.507958 TTGAAACTTCAATATTCCGATGCA 57.492 33.333 0.69 0.00 41.88 3.96
504 505 5.572511 GCATGCGATGTAAATTGAAACTTCA 59.427 36.000 0.00 0.00 34.92 3.02
505 506 5.801947 AGCATGCGATGTAAATTGAAACTTC 59.198 36.000 13.01 0.00 0.00 3.01
506 507 5.713025 AGCATGCGATGTAAATTGAAACTT 58.287 33.333 13.01 0.00 0.00 2.66
507 508 5.314923 AGCATGCGATGTAAATTGAAACT 57.685 34.783 13.01 0.00 0.00 2.66
508 509 4.202959 CGAGCATGCGATGTAAATTGAAAC 59.797 41.667 13.01 0.00 0.00 2.78
509 510 4.341935 CGAGCATGCGATGTAAATTGAAA 58.658 39.130 13.01 0.00 0.00 2.69
510 511 3.788466 GCGAGCATGCGATGTAAATTGAA 60.788 43.478 13.01 0.00 0.00 2.69
511 512 2.286359 GCGAGCATGCGATGTAAATTGA 60.286 45.455 13.01 0.00 0.00 2.57
512 513 2.039085 GCGAGCATGCGATGTAAATTG 58.961 47.619 13.01 0.00 0.00 2.32
513 514 1.670295 TGCGAGCATGCGATGTAAATT 59.330 42.857 13.01 0.00 37.81 1.82
514 515 1.298602 TGCGAGCATGCGATGTAAAT 58.701 45.000 13.01 0.00 37.81 1.40
515 516 1.298602 ATGCGAGCATGCGATGTAAA 58.701 45.000 13.01 0.00 37.81 2.01
516 517 1.298602 AATGCGAGCATGCGATGTAA 58.701 45.000 13.01 0.00 36.68 2.41
517 518 2.147436 TAATGCGAGCATGCGATGTA 57.853 45.000 13.01 6.07 36.68 2.29
518 519 1.516161 ATAATGCGAGCATGCGATGT 58.484 45.000 13.01 0.00 36.68 3.06
519 520 2.159037 AGAATAATGCGAGCATGCGATG 59.841 45.455 13.01 7.28 36.68 3.84
520 521 2.420642 AGAATAATGCGAGCATGCGAT 58.579 42.857 13.01 0.00 36.68 4.58
521 522 1.869774 AGAATAATGCGAGCATGCGA 58.130 45.000 13.01 0.98 36.68 5.10
522 523 2.032636 TCAAGAATAATGCGAGCATGCG 60.033 45.455 13.01 0.00 36.68 4.73
523 524 3.614159 TCAAGAATAATGCGAGCATGC 57.386 42.857 10.51 10.51 36.68 4.06
524 525 7.459394 AAAATTCAAGAATAATGCGAGCATG 57.541 32.000 11.64 0.00 36.68 4.06
565 566 9.853555 CTGAGACTTCAATATTAGAGCGAATAT 57.146 33.333 0.00 0.00 34.18 1.28
566 567 8.851145 ACTGAGACTTCAATATTAGAGCGAATA 58.149 33.333 0.00 0.00 31.69 1.75
567 568 7.721402 ACTGAGACTTCAATATTAGAGCGAAT 58.279 34.615 0.00 0.00 31.69 3.34
568 569 7.101652 ACTGAGACTTCAATATTAGAGCGAA 57.898 36.000 0.00 0.00 31.69 4.70
569 570 6.701145 ACTGAGACTTCAATATTAGAGCGA 57.299 37.500 0.00 0.00 31.69 4.93
570 571 7.041030 TCCTACTGAGACTTCAATATTAGAGCG 60.041 40.741 0.00 0.00 31.69 5.03
571 572 8.172352 TCCTACTGAGACTTCAATATTAGAGC 57.828 38.462 0.00 0.00 31.69 4.09
575 576 9.083422 CCAGATCCTACTGAGACTTCAATATTA 57.917 37.037 0.00 0.00 39.94 0.98
576 577 7.016072 CCCAGATCCTACTGAGACTTCAATATT 59.984 40.741 0.00 0.00 39.94 1.28
577 578 6.496565 CCCAGATCCTACTGAGACTTCAATAT 59.503 42.308 0.00 0.00 39.94 1.28
578 579 5.835819 CCCAGATCCTACTGAGACTTCAATA 59.164 44.000 0.00 0.00 39.94 1.90
579 580 4.653341 CCCAGATCCTACTGAGACTTCAAT 59.347 45.833 0.00 0.00 39.94 2.57
580 581 4.026744 CCCAGATCCTACTGAGACTTCAA 58.973 47.826 0.00 0.00 39.94 2.69
581 582 3.628513 CCCCAGATCCTACTGAGACTTCA 60.629 52.174 0.00 0.00 39.94 3.02
582 583 2.962421 CCCCAGATCCTACTGAGACTTC 59.038 54.545 0.00 0.00 39.94 3.01
583 584 2.359781 CCCCCAGATCCTACTGAGACTT 60.360 54.545 0.00 0.00 39.94 3.01
584 585 1.219213 CCCCCAGATCCTACTGAGACT 59.781 57.143 0.00 0.00 39.94 3.24
585 586 1.218196 TCCCCCAGATCCTACTGAGAC 59.782 57.143 0.00 0.00 39.94 3.36
586 587 1.501170 CTCCCCCAGATCCTACTGAGA 59.499 57.143 0.00 0.00 39.94 3.27
587 588 1.482177 CCTCCCCCAGATCCTACTGAG 60.482 61.905 0.00 0.00 39.94 3.35
588 589 0.563173 CCTCCCCCAGATCCTACTGA 59.437 60.000 0.00 0.00 39.94 3.41
589 590 1.124477 GCCTCCCCCAGATCCTACTG 61.124 65.000 0.00 0.00 37.61 2.74
590 591 1.237458 GCCTCCCCCAGATCCTACT 59.763 63.158 0.00 0.00 0.00 2.57
591 592 2.210711 CGCCTCCCCCAGATCCTAC 61.211 68.421 0.00 0.00 0.00 3.18
592 593 2.201490 CGCCTCCCCCAGATCCTA 59.799 66.667 0.00 0.00 0.00 2.94
593 594 4.888325 CCGCCTCCCCCAGATCCT 62.888 72.222 0.00 0.00 0.00 3.24
596 597 4.172232 TAGCCGCCTCCCCCAGAT 62.172 66.667 0.00 0.00 0.00 2.90
597 598 4.860881 CTAGCCGCCTCCCCCAGA 62.861 72.222 0.00 0.00 0.00 3.86
602 603 3.862991 GAACCCTAGCCGCCTCCC 61.863 72.222 0.00 0.00 0.00 4.30
603 604 2.368011 AAGAACCCTAGCCGCCTCC 61.368 63.158 0.00 0.00 0.00 4.30
604 605 1.153349 CAAGAACCCTAGCCGCCTC 60.153 63.158 0.00 0.00 0.00 4.70
605 606 2.990479 CAAGAACCCTAGCCGCCT 59.010 61.111 0.00 0.00 0.00 5.52
606 607 2.824489 GCAAGAACCCTAGCCGCC 60.824 66.667 0.00 0.00 0.00 6.13
607 608 3.195698 CGCAAGAACCCTAGCCGC 61.196 66.667 0.00 0.00 43.02 6.53
608 609 3.195698 GCGCAAGAACCCTAGCCG 61.196 66.667 0.30 0.00 43.02 5.52
609 610 2.824489 GGCGCAAGAACCCTAGCC 60.824 66.667 10.83 0.00 43.02 3.93
610 611 2.824489 GGGCGCAAGAACCCTAGC 60.824 66.667 10.83 0.00 43.36 3.42
611 612 2.511600 CGGGCGCAAGAACCCTAG 60.512 66.667 10.83 0.00 44.63 3.02
612 613 4.090588 CCGGGCGCAAGAACCCTA 62.091 66.667 10.83 0.00 44.63 3.53
652 653 2.891307 TAGACTAGTGCCCTGGCCCC 62.891 65.000 0.00 0.00 41.09 5.80
653 654 0.764752 ATAGACTAGTGCCCTGGCCC 60.765 60.000 0.00 0.00 41.09 5.80
654 655 0.682292 GATAGACTAGTGCCCTGGCC 59.318 60.000 0.00 0.00 41.09 5.36
655 656 0.315568 CGATAGACTAGTGCCCTGGC 59.684 60.000 0.00 0.00 39.46 4.85
656 657 1.693627 ACGATAGACTAGTGCCCTGG 58.306 55.000 0.00 0.00 41.38 4.45
657 658 3.802948 AAACGATAGACTAGTGCCCTG 57.197 47.619 0.00 0.00 41.38 4.45
658 659 3.318557 GCTAAACGATAGACTAGTGCCCT 59.681 47.826 0.00 0.00 41.38 5.19
659 660 3.552478 GGCTAAACGATAGACTAGTGCCC 60.552 52.174 0.00 0.00 41.38 5.36
660 661 3.640592 GGCTAAACGATAGACTAGTGCC 58.359 50.000 0.00 0.00 41.38 5.01
661 662 3.298317 CGGCTAAACGATAGACTAGTGC 58.702 50.000 0.00 0.00 41.38 4.40
662 663 3.003482 AGCGGCTAAACGATAGACTAGTG 59.997 47.826 0.00 0.00 41.38 2.74
663 664 3.212685 AGCGGCTAAACGATAGACTAGT 58.787 45.455 0.00 0.00 41.38 2.57
664 665 3.900388 AGCGGCTAAACGATAGACTAG 57.100 47.619 0.00 0.00 41.38 2.57
670 671 5.894807 ACTTAAACTAGCGGCTAAACGATA 58.105 37.500 11.39 0.00 35.47 2.92
671 672 4.752146 ACTTAAACTAGCGGCTAAACGAT 58.248 39.130 11.39 0.00 35.47 3.73
672 673 4.178545 ACTTAAACTAGCGGCTAAACGA 57.821 40.909 11.39 0.00 35.47 3.85
673 674 4.151157 ACAACTTAAACTAGCGGCTAAACG 59.849 41.667 11.39 2.23 0.00 3.60
674 675 5.602458 ACAACTTAAACTAGCGGCTAAAC 57.398 39.130 11.39 0.00 0.00 2.01
675 676 5.561339 GCAACAACTTAAACTAGCGGCTAAA 60.561 40.000 11.39 1.59 0.00 1.85
676 677 4.083696 GCAACAACTTAAACTAGCGGCTAA 60.084 41.667 11.39 0.00 0.00 3.09
677 678 3.434299 GCAACAACTTAAACTAGCGGCTA 59.566 43.478 9.71 9.71 0.00 3.93
678 679 2.225727 GCAACAACTTAAACTAGCGGCT 59.774 45.455 7.98 7.98 0.00 5.52
679 680 2.225727 AGCAACAACTTAAACTAGCGGC 59.774 45.455 0.00 0.00 0.00 6.53
680 681 5.796350 ATAGCAACAACTTAAACTAGCGG 57.204 39.130 0.00 0.00 0.00 5.52
681 682 7.478667 CAGAAATAGCAACAACTTAAACTAGCG 59.521 37.037 0.00 0.00 0.00 4.26
682 683 8.290325 ACAGAAATAGCAACAACTTAAACTAGC 58.710 33.333 0.00 0.00 0.00 3.42
683 684 9.813080 GACAGAAATAGCAACAACTTAAACTAG 57.187 33.333 0.00 0.00 0.00 2.57
684 685 9.332502 TGACAGAAATAGCAACAACTTAAACTA 57.667 29.630 0.00 0.00 0.00 2.24
685 686 8.220755 TGACAGAAATAGCAACAACTTAAACT 57.779 30.769 0.00 0.00 0.00 2.66
686 687 8.850454 TTGACAGAAATAGCAACAACTTAAAC 57.150 30.769 0.00 0.00 0.00 2.01
691 692 9.683069 CTTTTATTGACAGAAATAGCAACAACT 57.317 29.630 0.00 0.00 0.00 3.16
692 693 9.463443 ACTTTTATTGACAGAAATAGCAACAAC 57.537 29.630 0.00 0.00 0.00 3.32
704 705 9.513906 TCCACATGATTTACTTTTATTGACAGA 57.486 29.630 0.00 0.00 0.00 3.41
713 714 8.859090 TGTCTCATTTCCACATGATTTACTTTT 58.141 29.630 0.00 0.00 32.59 2.27
714 715 8.299570 GTGTCTCATTTCCACATGATTTACTTT 58.700 33.333 0.00 0.00 32.59 2.66
715 716 7.361201 CGTGTCTCATTTCCACATGATTTACTT 60.361 37.037 0.00 0.00 32.59 2.24
716 717 6.092670 CGTGTCTCATTTCCACATGATTTACT 59.907 38.462 0.00 0.00 32.59 2.24
717 718 6.250819 CGTGTCTCATTTCCACATGATTTAC 58.749 40.000 0.00 0.00 32.59 2.01
718 719 5.163764 GCGTGTCTCATTTCCACATGATTTA 60.164 40.000 0.00 0.00 32.59 1.40
719 720 4.379813 GCGTGTCTCATTTCCACATGATTT 60.380 41.667 0.00 0.00 32.59 2.17
720 721 3.127548 GCGTGTCTCATTTCCACATGATT 59.872 43.478 0.00 0.00 32.59 2.57
721 722 2.679837 GCGTGTCTCATTTCCACATGAT 59.320 45.455 0.00 0.00 32.59 2.45
722 723 2.076100 GCGTGTCTCATTTCCACATGA 58.924 47.619 0.00 0.00 0.00 3.07
723 724 1.201954 CGCGTGTCTCATTTCCACATG 60.202 52.381 0.00 0.00 0.00 3.21
724 725 1.078709 CGCGTGTCTCATTTCCACAT 58.921 50.000 0.00 0.00 0.00 3.21
725 726 0.032815 TCGCGTGTCTCATTTCCACA 59.967 50.000 5.77 0.00 0.00 4.17
726 727 1.126846 CTTCGCGTGTCTCATTTCCAC 59.873 52.381 5.77 0.00 0.00 4.02
727 728 1.428448 CTTCGCGTGTCTCATTTCCA 58.572 50.000 5.77 0.00 0.00 3.53
728 729 0.721718 CCTTCGCGTGTCTCATTTCC 59.278 55.000 5.77 0.00 0.00 3.13
729 730 1.429463 ACCTTCGCGTGTCTCATTTC 58.571 50.000 5.77 0.00 0.00 2.17
730 731 2.029290 ACTACCTTCGCGTGTCTCATTT 60.029 45.455 5.77 0.00 0.00 2.32
731 732 1.544691 ACTACCTTCGCGTGTCTCATT 59.455 47.619 5.77 0.00 0.00 2.57
732 733 1.174783 ACTACCTTCGCGTGTCTCAT 58.825 50.000 5.77 0.00 0.00 2.90
733 734 0.956633 AACTACCTTCGCGTGTCTCA 59.043 50.000 5.77 0.00 0.00 3.27
734 735 1.335689 ACAACTACCTTCGCGTGTCTC 60.336 52.381 5.77 0.00 0.00 3.36
735 736 0.672342 ACAACTACCTTCGCGTGTCT 59.328 50.000 5.77 0.00 0.00 3.41
736 737 2.095567 TCTACAACTACCTTCGCGTGTC 60.096 50.000 5.77 0.00 0.00 3.67
737 738 1.881973 TCTACAACTACCTTCGCGTGT 59.118 47.619 5.77 2.58 0.00 4.49
738 739 2.624316 TCTACAACTACCTTCGCGTG 57.376 50.000 5.77 0.00 0.00 5.34
739 740 3.648339 TTTCTACAACTACCTTCGCGT 57.352 42.857 5.77 0.00 0.00 6.01
740 741 4.232221 TCTTTTCTACAACTACCTTCGCG 58.768 43.478 0.00 0.00 0.00 5.87
741 742 5.695363 ACTTCTTTTCTACAACTACCTTCGC 59.305 40.000 0.00 0.00 0.00 4.70
742 743 6.700520 ACACTTCTTTTCTACAACTACCTTCG 59.299 38.462 0.00 0.00 0.00 3.79
743 744 7.709613 TGACACTTCTTTTCTACAACTACCTTC 59.290 37.037 0.00 0.00 0.00 3.46
744 745 7.494952 GTGACACTTCTTTTCTACAACTACCTT 59.505 37.037 0.00 0.00 0.00 3.50
745 746 6.985059 GTGACACTTCTTTTCTACAACTACCT 59.015 38.462 0.00 0.00 0.00 3.08
746 747 6.202379 GGTGACACTTCTTTTCTACAACTACC 59.798 42.308 5.39 0.00 0.00 3.18
747 748 6.074463 CGGTGACACTTCTTTTCTACAACTAC 60.074 42.308 5.39 0.00 0.00 2.73
748 749 5.981315 CGGTGACACTTCTTTTCTACAACTA 59.019 40.000 5.39 0.00 0.00 2.24
749 750 4.809426 CGGTGACACTTCTTTTCTACAACT 59.191 41.667 5.39 0.00 0.00 3.16
750 751 4.569564 ACGGTGACACTTCTTTTCTACAAC 59.430 41.667 5.39 0.00 0.00 3.32
751 752 4.569162 CACGGTGACACTTCTTTTCTACAA 59.431 41.667 0.74 0.00 0.00 2.41
752 753 4.116961 CACGGTGACACTTCTTTTCTACA 58.883 43.478 0.74 0.00 0.00 2.74
753 754 3.059800 GCACGGTGACACTTCTTTTCTAC 60.060 47.826 13.29 0.00 0.00 2.59
754 755 3.128349 GCACGGTGACACTTCTTTTCTA 58.872 45.455 13.29 0.00 0.00 2.10
755 756 1.940613 GCACGGTGACACTTCTTTTCT 59.059 47.619 13.29 0.00 0.00 2.52
756 757 1.668751 TGCACGGTGACACTTCTTTTC 59.331 47.619 13.29 0.00 0.00 2.29
757 758 1.670811 CTGCACGGTGACACTTCTTTT 59.329 47.619 13.29 0.00 0.00 2.27
844 845 4.351054 GGAGGGTGGTGTGGCCTG 62.351 72.222 3.32 0.00 38.35 4.85
919 929 2.202932 CGGGAGATTCGGGTGCTG 60.203 66.667 0.00 0.00 0.00 4.41
920 930 3.470888 CCGGGAGATTCGGGTGCT 61.471 66.667 0.00 0.00 43.45 4.40
1780 1826 4.436998 GGTGGAGGACGTCAGCCG 62.437 72.222 18.91 0.00 44.03 5.52
2088 2146 4.058817 GCCCATAGAAGACATAAACGGAG 58.941 47.826 0.00 0.00 0.00 4.63
2229 2287 5.470047 TCTCCACCAAACTTCTACTCTTC 57.530 43.478 0.00 0.00 0.00 2.87
2286 2344 4.441792 TCACATTGTCAAGGATATCCACG 58.558 43.478 23.81 13.63 38.89 4.94
2412 2470 2.841160 AAAAACCACACGCCGAGGC 61.841 57.895 3.59 3.59 37.85 4.70
2531 2589 3.845178 TCACTAGTACAAATCCACTGCG 58.155 45.455 0.00 0.00 0.00 5.18
2852 3252 7.719193 TGGAAGAGAAATTTGAAGTGTATGACA 59.281 33.333 0.00 0.00 0.00 3.58
2905 3305 3.461061 TGACTTGCTGAACTCTTCTGTG 58.539 45.455 0.00 0.00 0.00 3.66
2909 3309 4.572389 TGACTTTGACTTGCTGAACTCTTC 59.428 41.667 0.00 0.00 0.00 2.87
2920 3320 4.731773 GCTTCCAGTTGTGACTTTGACTTG 60.732 45.833 0.00 0.00 32.54 3.16
2925 3325 2.223572 GGTGCTTCCAGTTGTGACTTTG 60.224 50.000 0.00 0.00 32.54 2.77
2927 3327 1.064758 TGGTGCTTCCAGTTGTGACTT 60.065 47.619 0.00 0.00 41.93 3.01
3076 3480 1.127567 AGCCAGCCTGTCAGGTAACA 61.128 55.000 20.24 0.00 37.80 2.41
3122 3526 4.288670 CAGATAGTGCCAAATCAAGCAG 57.711 45.455 0.00 0.00 40.28 4.24
3594 4045 5.050490 GTCGATGAACTTGGCAGTACATAT 58.950 41.667 0.00 0.00 30.68 1.78
3684 4141 3.949754 CACATGCTCTTGATAACCCATGT 59.050 43.478 0.00 0.00 42.64 3.21
3704 4161 4.458989 TGTATTGCAGATTTTCCTGGTCAC 59.541 41.667 0.00 0.00 34.82 3.67
3823 4283 3.111853 TCTGGTAGCACTTGTTGACAG 57.888 47.619 0.00 0.00 0.00 3.51
3876 4336 3.374988 CAGCTTGCCAAATCATCTCGTTA 59.625 43.478 0.00 0.00 0.00 3.18
3960 4420 1.446907 CTGTGCCAAGGCTAACAGAG 58.553 55.000 20.84 2.92 43.46 3.35
3989 4449 5.441718 ACAGGCAGAAATGGAATAAGAGA 57.558 39.130 0.00 0.00 0.00 3.10
4022 4482 7.939782 TCTGCAATGAAAATCTTGACAAAGTA 58.060 30.769 0.00 0.00 34.78 2.24
4025 4485 9.932207 ATATTCTGCAATGAAAATCTTGACAAA 57.068 25.926 0.00 0.00 0.00 2.83
4178 4641 5.506730 TCCACTAAATTACATGGTCACCA 57.493 39.130 0.00 0.00 38.19 4.17
4275 4738 6.120905 AGCAATCTTGAAGAACTAGCATGAT 58.879 36.000 0.00 0.00 0.00 2.45
4477 5252 4.637483 TGACTTTTCAGCTTTGGACTTG 57.363 40.909 0.00 0.00 0.00 3.16
4498 5273 2.172293 TGCTTGCAAAATTTGACCCCTT 59.828 40.909 10.26 0.00 0.00 3.95
4598 5376 4.798387 CGTTAAAGCAATGTTGGAATAGGC 59.202 41.667 0.00 0.00 0.00 3.93
4780 5561 4.513442 CGTACCATTCCATTTCAGAAGGA 58.487 43.478 0.00 0.00 0.00 3.36
4873 5660 5.667466 GGAGGACGTATATTTTCTTGGTCA 58.333 41.667 0.00 0.00 0.00 4.02
4966 5759 0.668535 AACAAGCTTCCGCCTTGTTC 59.331 50.000 12.28 0.00 40.29 3.18
4990 5783 0.957888 GTCTTGACCAGCCTCCTTGC 60.958 60.000 0.00 0.00 0.00 4.01
5282 6088 4.724293 TGGTGTGATCCCAGGTCATTATTA 59.276 41.667 0.00 0.00 0.00 0.98
5283 6089 3.527253 TGGTGTGATCCCAGGTCATTATT 59.473 43.478 0.00 0.00 0.00 1.40
5284 6090 3.122480 TGGTGTGATCCCAGGTCATTAT 58.878 45.455 0.00 0.00 0.00 1.28
5308 6114 6.347859 ACTACTCTAGGACTGAAGTTTTGG 57.652 41.667 0.00 0.00 0.00 3.28
5343 6150 6.886178 AGCTTAAGTTACTTAGGGGAATGA 57.114 37.500 14.55 0.00 0.00 2.57
5384 6191 5.471116 TCAACAGATAACTATCATGCCATGC 59.529 40.000 0.00 0.00 35.17 4.06
5467 6350 5.924254 CAGTGAGTCAACGGTATGAAACTAA 59.076 40.000 0.00 0.00 0.00 2.24
5499 6382 6.258230 TGTCTTTTGGAAGCATACATTCTG 57.742 37.500 0.00 0.00 32.75 3.02
5530 6413 0.593128 CCCTTTGAAGCCACAGTTCG 59.407 55.000 0.00 0.00 0.00 3.95
5553 6436 9.298774 CGAAGAACTCTACCGTTTCTATTTAAT 57.701 33.333 0.00 0.00 0.00 1.40
5554 6437 7.274250 GCGAAGAACTCTACCGTTTCTATTTAA 59.726 37.037 0.00 0.00 0.00 1.52
5580 6463 3.624410 TCATGCTGACGATGATCCTTTTG 59.376 43.478 0.00 0.00 0.00 2.44
5593 6476 9.757227 AGTATTAAACTAAGATCTCATGCTGAC 57.243 33.333 0.00 0.00 36.36 3.51
5599 6482 8.361139 CCGGACAGTATTAAACTAAGATCTCAT 58.639 37.037 0.00 0.00 35.76 2.90
5612 6496 4.638421 CAGCCATTTTCCGGACAGTATTAA 59.362 41.667 1.83 0.00 0.00 1.40
5623 6507 2.223021 CGTGACATACAGCCATTTTCCG 60.223 50.000 0.00 0.00 0.00 4.30
5629 6513 1.131638 ATCCCGTGACATACAGCCAT 58.868 50.000 0.00 0.00 0.00 4.40
5643 6527 1.202533 ACGAGAAAGGCATGTATCCCG 60.203 52.381 0.00 0.00 0.00 5.14
5655 6539 5.673337 TCACCTTTTGATCAACGAGAAAG 57.327 39.130 7.89 8.62 0.00 2.62
5709 6594 8.281212 ACAGGATAAACATGAAGTGGAAATAC 57.719 34.615 0.00 0.00 34.19 1.89
5731 6616 6.403866 AGGATGAGAAAGTATAGCTGACAG 57.596 41.667 0.00 0.00 0.00 3.51
5887 6772 1.668826 AAATCTGGTGGACCTAGGCA 58.331 50.000 9.30 0.00 36.82 4.75
5891 6777 4.290985 TCCATGAAAAATCTGGTGGACCTA 59.709 41.667 0.00 0.00 36.82 3.08
5934 6820 7.119699 CAGGTTGCTACAATTACAGAGAATCAA 59.880 37.037 0.00 0.00 37.82 2.57
6018 6910 6.543430 TTTCAGGGAAAATAATGGACATGG 57.457 37.500 0.00 0.00 0.00 3.66
6029 6921 6.652062 GCATTTCAGACAATTTCAGGGAAAAT 59.348 34.615 0.00 0.00 35.11 1.82
6088 6980 4.178540 TGATAACGTTAGTACCTTGCAGC 58.821 43.478 14.25 0.00 0.00 5.25
6104 6999 1.070577 CGCAACGCCTAGCATGATAAC 60.071 52.381 0.00 0.00 0.00 1.89
6133 7028 4.053295 GGTTAAGTGTGTGCTTTCGTAGA 58.947 43.478 0.00 0.00 0.00 2.59
6139 7034 5.761165 AATAACGGTTAAGTGTGTGCTTT 57.239 34.783 4.47 0.00 0.00 3.51
6172 7068 0.951558 ACCTCGCGTGATTTGCTTTT 59.048 45.000 10.21 0.00 0.00 2.27
6217 7113 9.469807 GTTGATTTGTCAATGTAATTTGGTACA 57.530 29.630 0.00 0.00 38.32 2.90
6279 7176 9.809096 TGCATGTTAACAAGTTTTATTTTCAGA 57.191 25.926 13.23 0.00 0.00 3.27
6299 7196 2.038952 TCAGTCTTTAGCAGGTGCATGT 59.961 45.455 4.48 0.00 45.16 3.21
6300 7197 2.703416 TCAGTCTTTAGCAGGTGCATG 58.297 47.619 4.48 0.00 45.16 4.06
6302 7199 2.368548 TCTTCAGTCTTTAGCAGGTGCA 59.631 45.455 4.48 0.00 45.16 4.57
6303 7200 3.045601 TCTTCAGTCTTTAGCAGGTGC 57.954 47.619 0.00 0.00 42.49 5.01
6304 7201 5.083533 AGATCTTCAGTCTTTAGCAGGTG 57.916 43.478 0.00 0.00 0.00 4.00
6305 7202 5.128008 GGTAGATCTTCAGTCTTTAGCAGGT 59.872 44.000 0.00 0.00 0.00 4.00
6306 7203 5.127845 TGGTAGATCTTCAGTCTTTAGCAGG 59.872 44.000 0.00 0.00 0.00 4.85
6349 7248 6.575056 GCACTATAGCCATTCCATGATGTAGA 60.575 42.308 0.00 0.00 0.00 2.59
6429 7329 1.859080 GCGGTAACTGCTATGTAGTGC 59.141 52.381 0.00 0.00 34.09 4.40
6477 7380 5.525484 TGGTGAGGGAGTATAACACATACT 58.475 41.667 0.00 0.00 37.53 2.12
6478 7381 5.864418 TGGTGAGGGAGTATAACACATAC 57.136 43.478 0.00 0.00 33.82 2.39
6482 7489 5.128827 TCAAGATGGTGAGGGAGTATAACAC 59.871 44.000 0.00 0.00 0.00 3.32
6484 7491 5.871396 TCAAGATGGTGAGGGAGTATAAC 57.129 43.478 0.00 0.00 0.00 1.89
6487 7494 4.723789 ACAATCAAGATGGTGAGGGAGTAT 59.276 41.667 0.00 0.00 0.00 2.12
6489 7496 2.915604 ACAATCAAGATGGTGAGGGAGT 59.084 45.455 0.00 0.00 0.00 3.85
6490 7497 3.641434 ACAATCAAGATGGTGAGGGAG 57.359 47.619 0.00 0.00 0.00 4.30
6493 7500 3.877559 TGCTACAATCAAGATGGTGAGG 58.122 45.455 0.29 0.00 0.00 3.86
6505 7512 3.003480 GTCCTCACAGGTTGCTACAATC 58.997 50.000 0.00 0.00 36.53 2.67
6508 7515 1.344438 CAGTCCTCACAGGTTGCTACA 59.656 52.381 0.00 0.00 36.53 2.74
6509 7516 1.941668 GCAGTCCTCACAGGTTGCTAC 60.942 57.143 11.90 0.00 40.90 3.58
6510 7517 0.321671 GCAGTCCTCACAGGTTGCTA 59.678 55.000 11.90 0.00 40.90 3.49
6512 7519 0.536006 AAGCAGTCCTCACAGGTTGC 60.536 55.000 11.47 11.47 42.81 4.17
6513 7520 1.972872 AAAGCAGTCCTCACAGGTTG 58.027 50.000 0.00 0.00 36.53 3.77
6516 7523 2.564947 ACTCTAAAGCAGTCCTCACAGG 59.435 50.000 0.00 0.00 36.46 4.00
6517 7524 3.951775 ACTCTAAAGCAGTCCTCACAG 57.048 47.619 0.00 0.00 0.00 3.66
6519 7526 3.006967 TGGAACTCTAAAGCAGTCCTCAC 59.993 47.826 0.00 0.00 0.00 3.51
6540 7547 4.697352 CCCTCACCTATTTGTCTCAACTTG 59.303 45.833 0.00 0.00 0.00 3.16
6575 7582 4.010667 AGTTTGTTAGCCCGTGTTATCA 57.989 40.909 0.00 0.00 0.00 2.15
6610 7617 4.476479 AGCCTCCTTAATGTGGATCTTCTT 59.524 41.667 3.35 0.00 32.56 2.52
6853 7910 1.203287 GAGAGCAAAAGTTGGCCCATC 59.797 52.381 0.00 0.00 0.00 3.51
6889 7947 3.558505 CGCAAGAACTTCAGAACATTGG 58.441 45.455 0.00 0.00 43.02 3.16
6941 7999 5.538118 CACATCGTGCAGTATATAAGGGAA 58.462 41.667 0.00 0.00 0.00 3.97
7083 8164 0.598065 CTTCCGAAAAGGCAGGTTGG 59.402 55.000 0.00 0.00 40.77 3.77
7098 8179 6.702723 TGTAACGTTGCACCATATATACTTCC 59.297 38.462 15.43 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.