Multiple sequence alignment - TraesCS1D01G352200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G352200 chr1D 100.000 4109 0 0 749 4857 437422037 437426145 0.000000e+00 7589
1 TraesCS1D01G352200 chr1D 100.000 395 0 0 1 395 437421289 437421683 0.000000e+00 730
2 TraesCS1D01G352200 chr1D 83.261 460 50 18 4417 4857 437432362 437432813 9.800000e-107 398
3 TraesCS1D01G352200 chr1D 86.589 343 38 8 2569 2908 468786416 468786753 5.940000e-99 372
4 TraesCS1D01G352200 chr1A 91.394 825 45 13 3070 3892 534260132 534259332 0.000000e+00 1107
5 TraesCS1D01G352200 chr1A 81.355 1255 118 58 749 1933 534262189 534260981 0.000000e+00 915
6 TraesCS1D01G352200 chr1A 90.549 656 37 15 1931 2574 534260948 534260306 0.000000e+00 845
7 TraesCS1D01G352200 chr1A 94.207 397 20 2 1 395 534263057 534262662 1.930000e-168 603
8 TraesCS1D01G352200 chr1A 86.923 390 27 9 3919 4290 534259335 534258952 2.700000e-112 416
9 TraesCS1D01G352200 chr1A 80.344 407 56 20 4405 4805 534258546 534258158 2.210000e-73 287
10 TraesCS1D01G352200 chr1A 94.000 150 7 1 2925 3072 534260314 534260165 4.890000e-55 226
11 TraesCS1D01G352200 chr1B 89.655 725 44 13 3479 4182 592652499 592653213 0.000000e+00 894
12 TraesCS1D01G352200 chr1B 90.312 640 46 9 1946 2574 592651207 592651841 0.000000e+00 824
13 TraesCS1D01G352200 chr1B 82.061 825 77 42 749 1538 592648302 592649090 5.300000e-179 638
14 TraesCS1D01G352200 chr1B 96.562 349 10 1 46 392 592647495 592647843 1.170000e-160 577
15 TraesCS1D01G352200 chr1B 92.542 295 17 3 3201 3495 592652194 592652483 7.520000e-113 418
16 TraesCS1D01G352200 chr1B 81.522 368 27 10 1573 1900 592649085 592649451 1.040000e-66 265
17 TraesCS1D01G352200 chr1B 91.146 192 9 3 4409 4596 592655355 592655542 2.240000e-63 254
18 TraesCS1D01G352200 chr1B 93.333 150 8 1 2925 3072 592651833 592651982 2.280000e-53 220
19 TraesCS1D01G352200 chr1B 88.360 189 12 3 3070 3258 592652015 592652193 8.180000e-53 219
20 TraesCS1D01G352200 chr7D 91.740 339 25 3 2573 2908 126484108 126483770 7.360000e-128 468
21 TraesCS1D01G352200 chr5D 90.202 347 21 3 2575 2908 389527575 389527229 1.600000e-119 440
22 TraesCS1D01G352200 chr3D 89.655 348 21 4 2575 2908 33352415 33352069 3.470000e-116 429
23 TraesCS1D01G352200 chr2D 89.565 345 24 2 2575 2908 426006781 426006438 1.250000e-115 427
24 TraesCS1D01G352200 chr2D 89.337 347 23 4 2573 2908 455893351 455893008 1.620000e-114 424
25 TraesCS1D01G352200 chr2D 89.368 348 22 4 2574 2908 641973605 641973260 1.620000e-114 424
26 TraesCS1D01G352200 chr2D 86.269 335 40 6 2578 2908 372514935 372514603 4.620000e-95 359
27 TraesCS1D01G352200 chr3B 90.549 328 18 3 2576 2891 82631890 82631564 5.810000e-114 422
28 TraesCS1D01G352200 chr4A 89.049 347 25 3 2574 2908 13061984 13062329 7.520000e-113 418
29 TraesCS1D01G352200 chr4A 88.150 346 29 7 2575 2908 429414652 429414307 7.570000e-108 401
30 TraesCS1D01G352200 chr4A 87.536 345 30 8 2576 2908 574929108 574929451 2.120000e-103 387
31 TraesCS1D01G352200 chr4D 88.761 347 26 3 2573 2908 189734237 189733893 3.500000e-111 412
32 TraesCS1D01G352200 chr2A 89.021 337 26 6 2583 2908 23756499 23756835 1.630000e-109 407
33 TraesCS1D01G352200 chr3A 88.150 346 30 6 2574 2908 41949484 41949139 7.570000e-108 401
34 TraesCS1D01G352200 chr6D 84.971 346 19 10 2574 2908 368207148 368207471 2.180000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G352200 chr1D 437421289 437426145 4856 False 4159.500000 7589 100.000000 1 4857 2 chr1D.!!$F3 4856
1 TraesCS1D01G352200 chr1A 534258158 534263057 4899 True 628.428571 1107 88.396000 1 4805 7 chr1A.!!$R1 4804
2 TraesCS1D01G352200 chr1B 592647495 592655542 8047 False 478.777778 894 89.499222 46 4596 9 chr1B.!!$F1 4550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 1039 0.747283 CAATCCACCCTGCTCTGCTC 60.747 60.0 0.00 0.0 0.00 4.26 F
2096 4124 0.179045 AACATGGGCGTATGGCTCTC 60.179 55.0 8.58 0.0 44.88 3.20 F
2601 4629 0.039256 CAAAGGTGAACATGGGTGCG 60.039 55.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2582 4610 0.039256 CGCACCCATGTTCACCTTTG 60.039 55.0 0.00 0.0 0.00 2.77 R
3654 5822 0.103208 GCGTGAGGTCAGGATTCGAT 59.897 55.0 3.88 0.0 33.92 3.59 R
4357 8578 0.178918 ATTCCCCTTTTTCCCCGCAA 60.179 50.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.828502 TCTTTATAGCACACAGATTAAGCG 57.171 37.500 0.00 0.00 0.00 4.68
34 35 5.618561 CACACAGATTAAGCGAAAGTAACC 58.381 41.667 0.00 0.00 0.00 2.85
35 36 4.387862 ACACAGATTAAGCGAAAGTAACCG 59.612 41.667 0.00 0.00 0.00 4.44
36 37 4.387862 CACAGATTAAGCGAAAGTAACCGT 59.612 41.667 0.00 0.00 0.00 4.83
37 38 4.992951 ACAGATTAAGCGAAAGTAACCGTT 59.007 37.500 0.00 0.00 0.00 4.44
38 39 5.467735 ACAGATTAAGCGAAAGTAACCGTTT 59.532 36.000 0.00 0.00 33.97 3.60
56 57 3.242480 CGTTTTCATCTCAGATCTCGCAG 59.758 47.826 0.00 0.00 0.00 5.18
58 59 1.396653 TCATCTCAGATCTCGCAGCA 58.603 50.000 0.00 0.00 0.00 4.41
59 60 1.753073 TCATCTCAGATCTCGCAGCAA 59.247 47.619 0.00 0.00 0.00 3.91
93 96 1.203100 AGGCAAGGAAGAATGCAAGGT 60.203 47.619 0.00 0.00 44.32 3.50
98 101 2.562296 AGGAAGAATGCAAGGTAGGGA 58.438 47.619 0.00 0.00 0.00 4.20
315 318 4.519213 AGTTGTAGAGCGAGATGTAGTCT 58.481 43.478 0.00 0.00 40.81 3.24
333 336 2.162008 GTCTGTGAAGAGGTCGAGGTAC 59.838 54.545 0.00 0.00 0.00 3.34
796 937 1.000270 TCTCTGCTCGGCTCTCCTT 60.000 57.895 0.00 0.00 0.00 3.36
853 1003 2.440247 TCTGCCGCTGATCCTCGA 60.440 61.111 5.42 0.00 0.00 4.04
879 1029 2.361104 TTCCGCTGCAATCCACCC 60.361 61.111 0.00 0.00 0.00 4.61
884 1034 2.413142 GCTGCAATCCACCCTGCTC 61.413 63.158 0.00 0.00 39.38 4.26
885 1035 1.302285 CTGCAATCCACCCTGCTCT 59.698 57.895 0.00 0.00 39.38 4.09
886 1036 1.001764 TGCAATCCACCCTGCTCTG 60.002 57.895 0.00 0.00 39.38 3.35
887 1037 2.413142 GCAATCCACCCTGCTCTGC 61.413 63.158 0.00 0.00 35.62 4.26
888 1038 1.302285 CAATCCACCCTGCTCTGCT 59.698 57.895 0.00 0.00 0.00 4.24
889 1039 0.747283 CAATCCACCCTGCTCTGCTC 60.747 60.000 0.00 0.00 0.00 4.26
890 1040 0.913451 AATCCACCCTGCTCTGCTCT 60.913 55.000 0.00 0.00 0.00 4.09
891 1041 1.624479 ATCCACCCTGCTCTGCTCTG 61.624 60.000 0.00 0.00 0.00 3.35
894 1044 2.187424 CCCTGCTCTGCTCTGCTC 59.813 66.667 0.00 0.00 0.00 4.26
901 1051 1.027357 CTCTGCTCTGCTCTCTCCTC 58.973 60.000 0.00 0.00 0.00 3.71
903 1053 1.005805 TCTGCTCTGCTCTCTCCTCTT 59.994 52.381 0.00 0.00 0.00 2.85
906 1056 1.686115 GCTCTGCTCTCTCCTCTTCCT 60.686 57.143 0.00 0.00 0.00 3.36
907 1057 2.738743 CTCTGCTCTCTCCTCTTCCTT 58.261 52.381 0.00 0.00 0.00 3.36
914 1064 1.209261 CTCTCCTCTTCCTTTCCCAGC 59.791 57.143 0.00 0.00 0.00 4.85
957 1108 3.917760 CGAGATCCGGCTCCACCC 61.918 72.222 0.62 0.00 33.26 4.61
1052 1207 3.491766 TGGTACCATCCTCTCTTCCTT 57.508 47.619 11.60 0.00 0.00 3.36
1055 1210 0.915364 ACCATCCTCTCTTCCTTGCC 59.085 55.000 0.00 0.00 0.00 4.52
1056 1211 1.211456 CCATCCTCTCTTCCTTGCCT 58.789 55.000 0.00 0.00 0.00 4.75
1068 1223 1.017387 CCTTGCCTGGCGTTATCTTC 58.983 55.000 14.98 0.00 0.00 2.87
1100 1255 2.029828 TCTTCAGTCGTGCTTCTCTTCC 60.030 50.000 0.00 0.00 0.00 3.46
1105 1260 2.891580 AGTCGTGCTTCTCTTCCTGTTA 59.108 45.455 0.00 0.00 0.00 2.41
1109 1264 3.192844 CGTGCTTCTCTTCCTGTTACCTA 59.807 47.826 0.00 0.00 0.00 3.08
1112 1267 5.418209 GTGCTTCTCTTCCTGTTACCTAGTA 59.582 44.000 0.00 0.00 0.00 1.82
1113 1268 5.418209 TGCTTCTCTTCCTGTTACCTAGTAC 59.582 44.000 0.00 0.00 0.00 2.73
1114 1269 5.653330 GCTTCTCTTCCTGTTACCTAGTACT 59.347 44.000 0.00 0.00 0.00 2.73
1115 1270 6.827762 GCTTCTCTTCCTGTTACCTAGTACTA 59.172 42.308 1.89 1.89 0.00 1.82
1116 1271 7.338957 GCTTCTCTTCCTGTTACCTAGTACTAA 59.661 40.741 3.76 0.00 0.00 2.24
1118 1273 9.765295 TTCTCTTCCTGTTACCTAGTACTAATT 57.235 33.333 3.76 0.00 0.00 1.40
1120 1275 8.302515 TCTTCCTGTTACCTAGTACTAATTGG 57.697 38.462 3.76 4.67 0.00 3.16
1122 1277 7.651027 TCCTGTTACCTAGTACTAATTGGAC 57.349 40.000 12.40 5.31 0.00 4.02
1124 1279 8.560039 TCCTGTTACCTAGTACTAATTGGACTA 58.440 37.037 12.40 0.00 0.00 2.59
1132 1287 9.968870 CCTAGTACTAATTGGACTAAAGATCAC 57.031 37.037 3.76 0.00 0.00 3.06
1136 1291 9.448294 GTACTAATTGGACTAAAGATCACTACG 57.552 37.037 0.00 0.00 0.00 3.51
1138 1293 9.182214 ACTAATTGGACTAAAGATCACTACGTA 57.818 33.333 0.00 0.00 0.00 3.57
1144 1299 9.000486 TGGACTAAAGATCACTACGTATATCAG 58.000 37.037 0.00 0.00 0.00 2.90
1147 1302 9.781633 ACTAAAGATCACTACGTATATCAGAGT 57.218 33.333 0.00 2.99 0.00 3.24
1156 1311 8.959058 CACTACGTATATCAGAGTTGAATTGTC 58.041 37.037 0.00 0.00 36.78 3.18
1158 1313 5.977725 ACGTATATCAGAGTTGAATTGTCCG 59.022 40.000 0.00 0.00 36.78 4.79
1159 1314 5.402568 CGTATATCAGAGTTGAATTGTCCGG 59.597 44.000 0.00 0.00 36.78 5.14
1160 1315 3.703001 ATCAGAGTTGAATTGTCCGGT 57.297 42.857 0.00 0.00 36.78 5.28
1161 1316 3.485463 TCAGAGTTGAATTGTCCGGTT 57.515 42.857 0.00 0.00 0.00 4.44
1162 1317 3.815809 TCAGAGTTGAATTGTCCGGTTT 58.184 40.909 0.00 0.00 0.00 3.27
1187 1363 8.674263 TTATCTAGAGGAGTAAGGTTAACTCG 57.326 38.462 5.42 0.00 43.55 4.18
1222 1400 5.613329 TGTTTCCTCGGCTTTTCTTACTTA 58.387 37.500 0.00 0.00 0.00 2.24
1223 1401 6.235664 TGTTTCCTCGGCTTTTCTTACTTAT 58.764 36.000 0.00 0.00 0.00 1.73
1253 1433 4.829064 TGACTTCAATTGTTGTACTGCC 57.171 40.909 5.13 0.00 0.00 4.85
1268 1448 3.653539 ACTGCCACCCGTTTAAATTTC 57.346 42.857 0.00 0.00 0.00 2.17
1272 1452 5.479027 ACTGCCACCCGTTTAAATTTCTTAT 59.521 36.000 0.00 0.00 0.00 1.73
1273 1453 6.660094 ACTGCCACCCGTTTAAATTTCTTATA 59.340 34.615 0.00 0.00 0.00 0.98
1329 1509 1.011451 GCTATCGATTCAGAGCGCCC 61.011 60.000 1.71 0.00 34.03 6.13
1330 1510 0.730834 CTATCGATTCAGAGCGCCCG 60.731 60.000 1.71 0.00 34.03 6.13
1356 1536 1.620822 AGCCAAAGAATTCGTTGCCT 58.379 45.000 23.65 17.68 34.69 4.75
1368 1548 7.206687 AGAATTCGTTGCCTGAATTTTGTTAA 58.793 30.769 0.00 0.00 43.96 2.01
1389 1569 7.221838 TGTTAACACTTATTTTTGCACAAGAGC 59.778 33.333 3.59 0.00 0.00 4.09
1420 1600 0.539986 TCATGGGGACGAGGTTTAGC 59.460 55.000 0.00 0.00 0.00 3.09
1467 1660 6.068931 CGAATCGTTTTGTCGTTAGATTTGT 58.931 36.000 0.00 0.00 0.00 2.83
1474 1667 6.671614 TTTGTCGTTAGATTTGTCAGTGTT 57.328 33.333 0.00 0.00 0.00 3.32
1532 1737 2.072298 CAGGCTTACAGTGAAGTCAGC 58.928 52.381 0.00 0.00 37.87 4.26
1538 1743 0.877649 ACAGTGAAGTCAGCAGTGCG 60.878 55.000 10.00 5.01 39.68 5.34
1569 1774 4.276926 GGAGGTAGCTAGCATTTGGATTTG 59.723 45.833 24.01 0.00 0.00 2.32
1673 1904 3.618150 ACTTGCAAAAGCAAATGTGACAC 59.382 39.130 0.00 0.00 0.00 3.67
1680 1911 6.457257 GCAAAAGCAAATGTGACACTTCATTT 60.457 34.615 7.20 2.14 42.53 2.32
1696 1927 9.323985 ACACTTCATTTTCTGATAGAATAGAGC 57.676 33.333 0.00 0.00 33.67 4.09
1715 1946 3.757745 GCTTGTTAGGATTAAGCGCAA 57.242 42.857 11.47 0.00 37.64 4.85
1716 1947 4.292977 GCTTGTTAGGATTAAGCGCAAT 57.707 40.909 11.47 0.10 37.64 3.56
1929 2188 4.762251 ACTTTTAGCACTGATTCCACTTCC 59.238 41.667 0.00 0.00 0.00 3.46
1936 2230 4.563580 GCACTGATTCCACTTCCTTACTGA 60.564 45.833 0.00 0.00 0.00 3.41
1985 4002 6.869913 CACTTGTGCCATTCAGAAAATTACAT 59.130 34.615 0.00 0.00 0.00 2.29
2008 4025 7.880195 ACATGATATTACTTTATGAGGTGGAGC 59.120 37.037 0.00 0.00 0.00 4.70
2011 4028 8.439971 TGATATTACTTTATGAGGTGGAGCATT 58.560 33.333 0.00 0.00 0.00 3.56
2013 4030 7.573968 ATTACTTTATGAGGTGGAGCATTTC 57.426 36.000 0.00 0.00 0.00 2.17
2014 4031 4.922206 ACTTTATGAGGTGGAGCATTTCA 58.078 39.130 0.00 0.00 0.00 2.69
2066 4093 5.681639 GGTTGAGCTAGGTATTATTGTGGT 58.318 41.667 0.00 0.00 0.00 4.16
2070 4097 5.661312 TGAGCTAGGTATTATTGTGGTGAGT 59.339 40.000 0.00 0.00 0.00 3.41
2096 4124 0.179045 AACATGGGCGTATGGCTCTC 60.179 55.000 8.58 0.00 44.88 3.20
2176 4204 6.367422 CGCCTCTTAACAGATGATATCCTTTC 59.633 42.308 0.00 0.00 0.00 2.62
2185 4213 9.471702 AACAGATGATATCCTTTCTGTGATTTT 57.528 29.630 23.13 11.72 45.98 1.82
2248 4276 6.431198 TTCAAATTCCCTTAACGTGATAGC 57.569 37.500 0.00 0.00 0.00 2.97
2473 4501 5.934935 ACGTAGTTGGTTGGAAGTTAATG 57.065 39.130 0.00 0.00 37.78 1.90
2484 4512 5.975693 TGGAAGTTAATGCCCTGTTTTAG 57.024 39.130 0.00 0.00 0.00 1.85
2531 4559 3.416119 CGTTGCTCGTGGTCTCTATAA 57.584 47.619 0.00 0.00 34.52 0.98
2574 4602 8.810652 TTGTGGTTTTATTTTGATACTTCTGC 57.189 30.769 0.00 0.00 0.00 4.26
2575 4603 7.081349 TGTGGTTTTATTTTGATACTTCTGCG 58.919 34.615 0.00 0.00 0.00 5.18
2576 4604 7.041030 TGTGGTTTTATTTTGATACTTCTGCGA 60.041 33.333 0.00 0.00 0.00 5.10
2577 4605 7.806014 GTGGTTTTATTTTGATACTTCTGCGAA 59.194 33.333 0.00 0.00 0.00 4.70
2578 4606 8.353684 TGGTTTTATTTTGATACTTCTGCGAAA 58.646 29.630 0.00 0.00 0.00 3.46
2579 4607 9.187455 GGTTTTATTTTGATACTTCTGCGAAAA 57.813 29.630 0.00 0.00 0.00 2.29
2582 4610 6.875926 ATTTTGATACTTCTGCGAAAATGC 57.124 33.333 0.00 0.00 0.00 3.56
2583 4611 5.369685 TTTGATACTTCTGCGAAAATGCA 57.630 34.783 0.00 0.00 43.95 3.96
2584 4612 5.369685 TTGATACTTCTGCGAAAATGCAA 57.630 34.783 0.00 0.00 45.74 4.08
2585 4613 5.369685 TGATACTTCTGCGAAAATGCAAA 57.630 34.783 0.00 0.00 45.74 3.68
2586 4614 5.393124 TGATACTTCTGCGAAAATGCAAAG 58.607 37.500 0.00 0.00 45.74 2.77
2587 4615 3.017265 ACTTCTGCGAAAATGCAAAGG 57.983 42.857 0.00 0.00 45.74 3.11
2588 4616 2.362077 ACTTCTGCGAAAATGCAAAGGT 59.638 40.909 0.00 0.00 45.74 3.50
2589 4617 2.420628 TCTGCGAAAATGCAAAGGTG 57.579 45.000 0.00 0.00 45.74 4.00
2590 4618 1.952990 TCTGCGAAAATGCAAAGGTGA 59.047 42.857 0.00 0.00 45.74 4.02
2591 4619 2.360483 TCTGCGAAAATGCAAAGGTGAA 59.640 40.909 0.00 0.00 45.74 3.18
2592 4620 2.468831 TGCGAAAATGCAAAGGTGAAC 58.531 42.857 0.00 0.00 43.02 3.18
2593 4621 2.159184 TGCGAAAATGCAAAGGTGAACA 60.159 40.909 0.00 0.00 43.02 3.18
2594 4622 3.059166 GCGAAAATGCAAAGGTGAACAT 58.941 40.909 0.00 0.00 34.15 2.71
2595 4623 3.120923 GCGAAAATGCAAAGGTGAACATG 60.121 43.478 0.00 0.00 34.15 3.21
2596 4624 3.429543 CGAAAATGCAAAGGTGAACATGG 59.570 43.478 0.00 0.00 0.00 3.66
2597 4625 3.405823 AAATGCAAAGGTGAACATGGG 57.594 42.857 0.00 0.00 0.00 4.00
2598 4626 2.014010 ATGCAAAGGTGAACATGGGT 57.986 45.000 0.00 0.00 0.00 4.51
2599 4627 1.039068 TGCAAAGGTGAACATGGGTG 58.961 50.000 0.00 0.00 0.00 4.61
2600 4628 0.319813 GCAAAGGTGAACATGGGTGC 60.320 55.000 0.00 0.00 0.00 5.01
2601 4629 0.039256 CAAAGGTGAACATGGGTGCG 60.039 55.000 0.00 0.00 0.00 5.34
2602 4630 1.805428 AAAGGTGAACATGGGTGCGC 61.805 55.000 0.00 0.00 31.86 6.09
2603 4631 4.101790 GGTGAACATGGGTGCGCG 62.102 66.667 0.00 0.00 33.58 6.86
2604 4632 3.353836 GTGAACATGGGTGCGCGT 61.354 61.111 8.43 0.00 0.00 6.01
2605 4633 3.353029 TGAACATGGGTGCGCGTG 61.353 61.111 8.43 0.00 0.00 5.34
2606 4634 4.759096 GAACATGGGTGCGCGTGC 62.759 66.667 15.48 15.48 43.20 5.34
2617 4645 3.353029 CGCGTGCACCCATGTGAA 61.353 61.111 12.15 0.00 45.76 3.18
2618 4646 2.689785 CGCGTGCACCCATGTGAAT 61.690 57.895 12.15 0.00 45.76 2.57
2619 4647 1.365368 CGCGTGCACCCATGTGAATA 61.365 55.000 12.15 0.00 45.76 1.75
2620 4648 1.024271 GCGTGCACCCATGTGAATAT 58.976 50.000 12.15 0.00 45.76 1.28
2621 4649 1.405105 GCGTGCACCCATGTGAATATT 59.595 47.619 12.15 0.00 45.76 1.28
2622 4650 2.616376 GCGTGCACCCATGTGAATATTA 59.384 45.455 12.15 0.00 45.76 0.98
2623 4651 3.066064 GCGTGCACCCATGTGAATATTAA 59.934 43.478 12.15 0.00 45.76 1.40
2624 4652 4.439426 GCGTGCACCCATGTGAATATTAAA 60.439 41.667 12.15 0.00 45.76 1.52
2625 4653 5.735922 GCGTGCACCCATGTGAATATTAAAT 60.736 40.000 12.15 0.00 45.76 1.40
2626 4654 6.272318 CGTGCACCCATGTGAATATTAAATT 58.728 36.000 12.15 0.00 45.76 1.82
2627 4655 6.417635 CGTGCACCCATGTGAATATTAAATTC 59.582 38.462 12.15 0.00 45.76 2.17
2628 4656 7.264221 GTGCACCCATGTGAATATTAAATTCA 58.736 34.615 5.22 8.21 45.76 2.57
2629 4657 7.927629 GTGCACCCATGTGAATATTAAATTCAT 59.072 33.333 5.22 1.19 45.76 2.57
2630 4658 9.140874 TGCACCCATGTGAATATTAAATTCATA 57.859 29.630 12.88 11.45 45.76 2.15
2631 4659 9.979578 GCACCCATGTGAATATTAAATTCATAA 57.020 29.630 12.88 7.90 45.76 1.90
2679 4707 8.474006 AATTCTAAAATTTTGCGGTATGAACC 57.526 30.769 13.76 0.00 35.61 3.62
2680 4708 6.827586 TCTAAAATTTTGCGGTATGAACCT 57.172 33.333 13.76 0.00 44.35 3.50
2681 4709 7.222000 TCTAAAATTTTGCGGTATGAACCTT 57.778 32.000 13.76 0.00 44.35 3.50
2682 4710 8.338072 TCTAAAATTTTGCGGTATGAACCTTA 57.662 30.769 13.76 0.00 44.35 2.69
2683 4711 8.455682 TCTAAAATTTTGCGGTATGAACCTTAG 58.544 33.333 13.76 0.00 44.35 2.18
2684 4712 6.584185 AAATTTTGCGGTATGAACCTTAGT 57.416 33.333 0.00 0.00 44.35 2.24
2685 4713 5.813080 ATTTTGCGGTATGAACCTTAGTC 57.187 39.130 0.00 0.00 44.35 2.59
2686 4714 2.572191 TGCGGTATGAACCTTAGTCG 57.428 50.000 0.00 0.00 44.35 4.18
2687 4715 2.093890 TGCGGTATGAACCTTAGTCGA 58.906 47.619 0.00 0.00 44.35 4.20
2688 4716 2.691526 TGCGGTATGAACCTTAGTCGAT 59.308 45.455 0.00 0.00 44.35 3.59
2689 4717 3.243301 TGCGGTATGAACCTTAGTCGATC 60.243 47.826 0.00 0.00 44.35 3.69
2690 4718 3.243301 GCGGTATGAACCTTAGTCGATCA 60.243 47.826 0.00 0.00 44.35 2.92
2691 4719 4.558898 GCGGTATGAACCTTAGTCGATCAT 60.559 45.833 0.00 0.00 44.35 2.45
2692 4720 5.529791 CGGTATGAACCTTAGTCGATCATT 58.470 41.667 1.13 0.00 44.35 2.57
2693 4721 5.629849 CGGTATGAACCTTAGTCGATCATTC 59.370 44.000 1.13 0.00 44.35 2.67
2694 4722 6.515200 CGGTATGAACCTTAGTCGATCATTCT 60.515 42.308 1.13 0.00 44.35 2.40
2695 4723 7.308408 CGGTATGAACCTTAGTCGATCATTCTA 60.308 40.741 1.13 0.00 44.35 2.10
2696 4724 7.808856 GGTATGAACCTTAGTCGATCATTCTAC 59.191 40.741 1.13 0.00 43.08 2.59
2697 4725 7.589958 ATGAACCTTAGTCGATCATTCTACT 57.410 36.000 0.00 0.00 32.98 2.57
2698 4726 7.028926 TGAACCTTAGTCGATCATTCTACTC 57.971 40.000 0.00 0.00 31.03 2.59
2699 4727 6.602009 TGAACCTTAGTCGATCATTCTACTCA 59.398 38.462 0.00 0.00 31.03 3.41
2700 4728 6.627395 ACCTTAGTCGATCATTCTACTCAG 57.373 41.667 0.00 0.00 31.03 3.35
2701 4729 5.533154 ACCTTAGTCGATCATTCTACTCAGG 59.467 44.000 6.42 6.42 41.50 3.86
2702 4730 5.533154 CCTTAGTCGATCATTCTACTCAGGT 59.467 44.000 0.00 0.00 35.67 4.00
2703 4731 4.909696 AGTCGATCATTCTACTCAGGTG 57.090 45.455 0.00 0.00 0.00 4.00
2704 4732 4.274147 AGTCGATCATTCTACTCAGGTGT 58.726 43.478 0.00 0.00 0.00 4.16
2705 4733 4.097135 AGTCGATCATTCTACTCAGGTGTG 59.903 45.833 0.00 0.00 0.00 3.82
2706 4734 4.096532 GTCGATCATTCTACTCAGGTGTGA 59.903 45.833 0.00 0.00 0.00 3.58
2707 4735 4.705023 TCGATCATTCTACTCAGGTGTGAA 59.295 41.667 0.00 0.00 30.14 3.18
2708 4736 5.039984 CGATCATTCTACTCAGGTGTGAAG 58.960 45.833 0.00 0.00 30.14 3.02
2709 4737 5.393569 CGATCATTCTACTCAGGTGTGAAGT 60.394 44.000 0.00 0.00 30.14 3.01
2710 4738 5.808366 TCATTCTACTCAGGTGTGAAGTT 57.192 39.130 0.00 0.00 30.14 2.66
2711 4739 6.174720 TCATTCTACTCAGGTGTGAAGTTT 57.825 37.500 0.00 0.00 30.14 2.66
2712 4740 6.223852 TCATTCTACTCAGGTGTGAAGTTTC 58.776 40.000 0.00 0.00 30.14 2.78
2713 4741 5.607939 TTCTACTCAGGTGTGAAGTTTCA 57.392 39.130 0.00 0.00 34.20 2.69
2714 4742 5.808366 TCTACTCAGGTGTGAAGTTTCAT 57.192 39.130 0.00 0.00 39.73 2.57
2715 4743 5.541845 TCTACTCAGGTGTGAAGTTTCATG 58.458 41.667 0.00 0.00 39.73 3.07
2716 4744 4.422073 ACTCAGGTGTGAAGTTTCATGA 57.578 40.909 0.00 0.00 39.73 3.07
2717 4745 4.978099 ACTCAGGTGTGAAGTTTCATGAT 58.022 39.130 0.00 0.00 39.73 2.45
2718 4746 4.758674 ACTCAGGTGTGAAGTTTCATGATG 59.241 41.667 0.00 0.00 39.73 3.07
2719 4747 4.717877 TCAGGTGTGAAGTTTCATGATGT 58.282 39.130 0.00 0.00 39.73 3.06
2720 4748 5.863965 TCAGGTGTGAAGTTTCATGATGTA 58.136 37.500 0.00 0.00 39.73 2.29
2721 4749 6.475504 TCAGGTGTGAAGTTTCATGATGTAT 58.524 36.000 0.00 0.00 39.73 2.29
2722 4750 6.942005 TCAGGTGTGAAGTTTCATGATGTATT 59.058 34.615 0.00 0.00 39.73 1.89
2723 4751 7.025365 CAGGTGTGAAGTTTCATGATGTATTG 58.975 38.462 0.00 0.00 39.73 1.90
2724 4752 6.942005 AGGTGTGAAGTTTCATGATGTATTGA 59.058 34.615 0.00 0.00 39.73 2.57
2725 4753 7.023575 GGTGTGAAGTTTCATGATGTATTGAC 58.976 38.462 0.00 0.00 39.73 3.18
2726 4754 7.308529 GGTGTGAAGTTTCATGATGTATTGACA 60.309 37.037 0.00 0.00 39.73 3.58
2727 4755 7.535258 GTGTGAAGTTTCATGATGTATTGACAC 59.465 37.037 13.25 13.25 37.74 3.67
2728 4756 7.023575 GTGAAGTTTCATGATGTATTGACACC 58.976 38.462 0.00 0.00 37.74 4.16
2729 4757 6.150976 TGAAGTTTCATGATGTATTGACACCC 59.849 38.462 0.00 0.00 33.08 4.61
2730 4758 5.569355 AGTTTCATGATGTATTGACACCCA 58.431 37.500 0.00 0.00 38.76 4.51
2731 4759 6.189859 AGTTTCATGATGTATTGACACCCAT 58.810 36.000 0.00 0.00 38.76 4.00
2732 4760 6.095860 AGTTTCATGATGTATTGACACCCATG 59.904 38.462 0.00 12.46 43.94 3.66
2733 4761 4.463070 TCATGATGTATTGACACCCATGG 58.537 43.478 4.14 4.14 43.39 3.66
2734 4762 4.079844 TCATGATGTATTGACACCCATGGT 60.080 41.667 11.73 0.00 43.39 3.55
2735 4763 5.131809 TCATGATGTATTGACACCCATGGTA 59.868 40.000 11.73 0.00 43.39 3.25
2736 4764 5.645056 TGATGTATTGACACCCATGGTAT 57.355 39.130 11.73 0.00 38.76 2.73
2737 4765 6.012337 TGATGTATTGACACCCATGGTATT 57.988 37.500 11.73 0.00 38.76 1.89
2738 4766 6.061441 TGATGTATTGACACCCATGGTATTC 58.939 40.000 11.73 3.90 38.76 1.75
2739 4767 5.708736 TGTATTGACACCCATGGTATTCT 57.291 39.130 11.73 0.00 32.11 2.40
2740 4768 6.073447 TGTATTGACACCCATGGTATTCTT 57.927 37.500 11.73 0.00 32.11 2.52
2741 4769 7.201702 TGTATTGACACCCATGGTATTCTTA 57.798 36.000 11.73 0.00 32.11 2.10
2742 4770 7.279615 TGTATTGACACCCATGGTATTCTTAG 58.720 38.462 11.73 0.00 32.11 2.18
2743 4771 5.772393 TTGACACCCATGGTATTCTTAGT 57.228 39.130 11.73 0.00 32.11 2.24
2744 4772 5.097742 TGACACCCATGGTATTCTTAGTG 57.902 43.478 11.73 11.15 32.11 2.74
2745 4773 4.780554 TGACACCCATGGTATTCTTAGTGA 59.219 41.667 17.12 0.00 32.11 3.41
2746 4774 5.249622 TGACACCCATGGTATTCTTAGTGAA 59.750 40.000 17.12 5.46 34.39 3.18
2747 4775 5.745227 ACACCCATGGTATTCTTAGTGAAG 58.255 41.667 17.12 0.00 33.70 3.02
2748 4776 5.487488 ACACCCATGGTATTCTTAGTGAAGA 59.513 40.000 17.12 0.00 35.30 2.87
2749 4777 6.012858 ACACCCATGGTATTCTTAGTGAAGAA 60.013 38.462 17.12 2.80 44.02 2.52
2750 4778 6.884295 CACCCATGGTATTCTTAGTGAAGAAA 59.116 38.462 11.73 0.00 43.53 2.52
2751 4779 7.393234 CACCCATGGTATTCTTAGTGAAGAAAA 59.607 37.037 11.73 0.00 43.53 2.29
2761 4789 8.948853 TTCTTAGTGAAGAAAATACAAATGCG 57.051 30.769 0.00 0.00 46.44 4.73
2762 4790 7.021196 TCTTAGTGAAGAAAATACAAATGCGC 58.979 34.615 0.00 0.00 38.80 6.09
2763 4791 4.485163 AGTGAAGAAAATACAAATGCGCC 58.515 39.130 4.18 0.00 0.00 6.53
2764 4792 4.218417 AGTGAAGAAAATACAAATGCGCCT 59.782 37.500 4.18 0.00 0.00 5.52
2765 4793 5.414454 AGTGAAGAAAATACAAATGCGCCTA 59.586 36.000 4.18 0.00 0.00 3.93
2766 4794 6.095440 AGTGAAGAAAATACAAATGCGCCTAT 59.905 34.615 4.18 0.00 0.00 2.57
2767 4795 7.282224 AGTGAAGAAAATACAAATGCGCCTATA 59.718 33.333 4.18 0.00 0.00 1.31
2768 4796 7.376072 GTGAAGAAAATACAAATGCGCCTATAC 59.624 37.037 4.18 0.00 0.00 1.47
2769 4797 7.282224 TGAAGAAAATACAAATGCGCCTATACT 59.718 33.333 4.18 0.00 0.00 2.12
2770 4798 8.671384 AAGAAAATACAAATGCGCCTATACTA 57.329 30.769 4.18 0.00 0.00 1.82
2771 4799 8.848474 AGAAAATACAAATGCGCCTATACTAT 57.152 30.769 4.18 0.00 0.00 2.12
2772 4800 9.284968 AGAAAATACAAATGCGCCTATACTATT 57.715 29.630 4.18 0.00 0.00 1.73
2773 4801 9.893305 GAAAATACAAATGCGCCTATACTATTT 57.107 29.630 4.18 0.00 0.00 1.40
2783 4811 9.720769 ATGCGCCTATACTATTTATTAAACAGT 57.279 29.630 4.18 5.49 0.00 3.55
2784 4812 8.984764 TGCGCCTATACTATTTATTAAACAGTG 58.015 33.333 4.18 0.00 0.00 3.66
2785 4813 8.985805 GCGCCTATACTATTTATTAAACAGTGT 58.014 33.333 9.78 6.28 0.00 3.55
2819 4847 6.481954 AACTTCGATTAGCTTCGATTTTGT 57.518 33.333 11.09 6.06 46.55 2.83
2820 4848 7.591006 AACTTCGATTAGCTTCGATTTTGTA 57.409 32.000 11.09 0.00 46.55 2.41
2821 4849 7.591006 ACTTCGATTAGCTTCGATTTTGTAA 57.409 32.000 11.09 0.00 46.55 2.41
2822 4850 8.197988 ACTTCGATTAGCTTCGATTTTGTAAT 57.802 30.769 11.09 0.00 46.55 1.89
2823 4851 8.665685 ACTTCGATTAGCTTCGATTTTGTAATT 58.334 29.630 11.09 0.00 46.55 1.40
2824 4852 9.490663 CTTCGATTAGCTTCGATTTTGTAATTT 57.509 29.630 11.09 0.00 46.55 1.82
2825 4853 9.834628 TTCGATTAGCTTCGATTTTGTAATTTT 57.165 25.926 11.09 0.00 46.55 1.82
2826 4854 9.834628 TCGATTAGCTTCGATTTTGTAATTTTT 57.165 25.926 6.41 0.00 42.81 1.94
2841 4869 1.960612 TTTTTCCCGGATTGCCACG 59.039 52.632 0.73 0.00 0.00 4.94
2847 4875 3.101209 CGGATTGCCACGGATGTG 58.899 61.111 0.00 0.00 46.00 3.21
2860 4888 4.882671 ACGGATGTGAAACTTCATATGC 57.117 40.909 6.44 8.18 42.30 3.14
2863 4891 5.088141 GGATGTGAAACTTCATATGCGAG 57.912 43.478 6.44 1.21 42.30 5.03
2864 4892 4.572389 GGATGTGAAACTTCATATGCGAGT 59.428 41.667 6.44 1.86 42.30 4.18
2865 4893 5.753438 GGATGTGAAACTTCATATGCGAGTA 59.247 40.000 6.44 0.00 42.30 2.59
2866 4894 6.425114 GGATGTGAAACTTCATATGCGAGTAT 59.575 38.462 6.44 2.89 42.30 2.12
2867 4895 7.598869 GGATGTGAAACTTCATATGCGAGTATA 59.401 37.037 6.44 1.18 42.30 1.47
2868 4896 7.694388 TGTGAAACTTCATATGCGAGTATAC 57.306 36.000 10.69 0.00 39.73 1.47
2869 4897 6.700081 TGTGAAACTTCATATGCGAGTATACC 59.300 38.462 10.69 0.00 39.73 2.73
2870 4898 5.918576 TGAAACTTCATATGCGAGTATACCG 59.081 40.000 10.69 4.41 31.01 4.02
2871 4899 4.436242 ACTTCATATGCGAGTATACCGG 57.564 45.455 0.00 0.00 0.00 5.28
2872 4900 3.825014 ACTTCATATGCGAGTATACCGGT 59.175 43.478 13.98 13.98 0.00 5.28
2873 4901 4.280174 ACTTCATATGCGAGTATACCGGTT 59.720 41.667 15.04 3.05 0.00 4.44
2874 4902 4.168922 TCATATGCGAGTATACCGGTTG 57.831 45.455 15.04 0.00 0.00 3.77
2875 4903 3.822167 TCATATGCGAGTATACCGGTTGA 59.178 43.478 15.04 2.06 0.00 3.18
2876 4904 2.503920 ATGCGAGTATACCGGTTGAC 57.496 50.000 15.04 11.82 0.00 3.18
2877 4905 1.466856 TGCGAGTATACCGGTTGACT 58.533 50.000 15.04 17.09 0.00 3.41
2878 4906 2.642427 TGCGAGTATACCGGTTGACTA 58.358 47.619 15.04 0.00 0.00 2.59
2879 4907 3.216800 TGCGAGTATACCGGTTGACTAT 58.783 45.455 15.04 1.20 0.00 2.12
2880 4908 3.004002 TGCGAGTATACCGGTTGACTATG 59.996 47.826 15.04 13.22 0.00 2.23
2881 4909 3.004106 GCGAGTATACCGGTTGACTATGT 59.996 47.826 15.04 0.00 0.00 2.29
2882 4910 4.214119 GCGAGTATACCGGTTGACTATGTA 59.786 45.833 15.04 0.00 0.00 2.29
2883 4911 5.106396 GCGAGTATACCGGTTGACTATGTAT 60.106 44.000 15.04 0.00 0.00 2.29
2884 4912 6.092670 GCGAGTATACCGGTTGACTATGTATA 59.907 42.308 15.04 0.00 0.00 1.47
2885 4913 7.201679 GCGAGTATACCGGTTGACTATGTATAT 60.202 40.741 15.04 0.00 29.87 0.86
2886 4914 8.671921 CGAGTATACCGGTTGACTATGTATATT 58.328 37.037 15.04 0.00 29.87 1.28
2923 4951 3.501950 GATTTTCACCAAATCTGCGTCC 58.498 45.455 0.88 0.00 45.30 4.79
2942 4970 4.261238 CGTCCATACTTCTGTCGCTATTCT 60.261 45.833 0.00 0.00 0.00 2.40
2969 4999 7.095607 GGTTGGCTACAGATATATTTGTTCTCG 60.096 40.741 13.58 3.24 0.00 4.04
3104 5169 3.118738 CCTTGGCTCATCGGTACTAGTTT 60.119 47.826 0.00 0.00 0.00 2.66
3105 5170 4.504858 CTTGGCTCATCGGTACTAGTTTT 58.495 43.478 0.00 0.00 0.00 2.43
3166 5231 4.154195 TGCCGAAGTAAAATTCTTCAGAGC 59.846 41.667 6.28 5.94 40.63 4.09
3238 5361 1.140312 TGATAATGACCCCTGGGCTC 58.860 55.000 7.39 3.74 39.32 4.70
3240 5363 1.494721 GATAATGACCCCTGGGCTCAA 59.505 52.381 14.53 0.00 39.32 3.02
3247 5370 2.291043 CCCTGGGCTCAACGGTACT 61.291 63.158 0.00 0.00 0.00 2.73
3249 5372 1.541310 CCTGGGCTCAACGGTACTGA 61.541 60.000 9.17 0.00 0.00 3.41
3296 5419 8.562892 AGCCATATCAGATGAAAGAAAATTACG 58.437 33.333 0.00 0.00 0.00 3.18
3337 5460 1.480137 CCTAGAGCCACAAGGAGTCAG 59.520 57.143 0.00 0.00 36.89 3.51
3338 5461 2.451490 CTAGAGCCACAAGGAGTCAGA 58.549 52.381 0.00 0.00 36.89 3.27
3339 5462 0.972883 AGAGCCACAAGGAGTCAGAC 59.027 55.000 0.00 0.00 36.89 3.51
3409 5532 8.850454 TTCTGCTCAGTTTGTTTTTACAATAC 57.150 30.769 0.00 0.00 0.00 1.89
3410 5533 7.990917 TCTGCTCAGTTTGTTTTTACAATACA 58.009 30.769 0.00 0.00 0.00 2.29
3463 5586 5.784177 AGCCGATGATAGTACAGGTTAATG 58.216 41.667 0.00 0.00 0.00 1.90
3464 5587 4.929808 GCCGATGATAGTACAGGTTAATGG 59.070 45.833 0.00 0.00 0.00 3.16
3465 5588 5.510861 GCCGATGATAGTACAGGTTAATGGT 60.511 44.000 0.00 0.00 0.00 3.55
3466 5589 6.522054 CCGATGATAGTACAGGTTAATGGTT 58.478 40.000 0.00 0.00 0.00 3.67
3467 5590 6.990349 CCGATGATAGTACAGGTTAATGGTTT 59.010 38.462 0.00 0.00 0.00 3.27
3468 5591 8.145767 CCGATGATAGTACAGGTTAATGGTTTA 58.854 37.037 0.00 0.00 0.00 2.01
3469 5592 9.706691 CGATGATAGTACAGGTTAATGGTTTAT 57.293 33.333 0.00 0.00 0.00 1.40
3475 5598 8.483307 AGTACAGGTTAATGGTTTATACAACG 57.517 34.615 0.00 0.00 0.00 4.10
3553 5721 1.090052 GTATGGCCTTGGTGACGAGC 61.090 60.000 3.32 0.00 40.85 5.03
3555 5723 1.264749 ATGGCCTTGGTGACGAGCTA 61.265 55.000 3.32 0.00 40.85 3.32
3557 5725 1.592223 GCCTTGGTGACGAGCTACT 59.408 57.895 0.00 0.00 40.85 2.57
3559 5727 0.888619 CCTTGGTGACGAGCTACTCA 59.111 55.000 0.00 0.00 40.85 3.41
3560 5728 1.478510 CCTTGGTGACGAGCTACTCAT 59.521 52.381 0.00 0.00 40.85 2.90
3615 5783 1.591619 GCTACAGACGCCGATTTAACC 59.408 52.381 0.00 0.00 0.00 2.85
3642 5810 0.905357 AGACCATAGTGGACAGTGCC 59.095 55.000 2.45 0.00 40.96 5.01
3654 5822 0.821517 ACAGTGCCGGAATCATCGTA 59.178 50.000 5.05 0.00 0.00 3.43
3710 5878 1.968540 GTGAGCCTGGGTTGCTGTC 60.969 63.158 0.00 0.00 39.69 3.51
3745 5913 3.065371 AGTTGCGCTATTATTGTTCAGCC 59.935 43.478 9.73 0.00 0.00 4.85
3770 5938 7.228150 CGTCTTTTCTCTCGAAACTAATTTCC 58.772 38.462 0.00 0.00 41.12 3.13
3774 5942 5.381174 TCTCTCGAAACTAATTTCCGTGA 57.619 39.130 0.00 0.00 41.12 4.35
3853 6021 0.734889 CAAACCTGATCCGTGATGGC 59.265 55.000 0.00 0.00 37.80 4.40
3892 6063 1.059838 GTCGGCATAAAACGGACGC 59.940 57.895 0.00 0.00 34.95 5.19
3893 6064 1.079681 TCGGCATAAAACGGACGCT 60.080 52.632 0.00 0.00 34.95 5.07
3894 6065 0.671163 TCGGCATAAAACGGACGCTT 60.671 50.000 0.00 0.00 34.95 4.68
3895 6066 0.520412 CGGCATAAAACGGACGCTTG 60.520 55.000 0.00 0.00 0.00 4.01
3896 6067 0.800012 GGCATAAAACGGACGCTTGA 59.200 50.000 0.00 0.00 0.00 3.02
3897 6068 1.400494 GGCATAAAACGGACGCTTGAT 59.600 47.619 0.00 0.00 0.00 2.57
3898 6069 2.610374 GGCATAAAACGGACGCTTGATA 59.390 45.455 0.00 0.00 0.00 2.15
3899 6070 3.545426 GGCATAAAACGGACGCTTGATAC 60.545 47.826 0.00 0.00 0.00 2.24
3900 6071 3.062909 GCATAAAACGGACGCTTGATACA 59.937 43.478 0.00 0.00 0.00 2.29
3901 6072 4.782195 GCATAAAACGGACGCTTGATACAG 60.782 45.833 0.00 0.00 0.00 2.74
3902 6073 2.736144 AAACGGACGCTTGATACAGA 57.264 45.000 0.00 0.00 0.00 3.41
3903 6074 2.736144 AACGGACGCTTGATACAGAA 57.264 45.000 0.00 0.00 0.00 3.02
3904 6075 2.736144 ACGGACGCTTGATACAGAAA 57.264 45.000 0.00 0.00 0.00 2.52
3905 6076 2.334838 ACGGACGCTTGATACAGAAAC 58.665 47.619 0.00 0.00 0.00 2.78
3906 6077 1.320555 CGGACGCTTGATACAGAAACG 59.679 52.381 0.00 0.00 0.00 3.60
3907 6078 2.602878 GGACGCTTGATACAGAAACGA 58.397 47.619 0.00 0.00 0.00 3.85
3908 6079 3.187700 GGACGCTTGATACAGAAACGAT 58.812 45.455 0.00 0.00 0.00 3.73
3909 6080 3.000322 GGACGCTTGATACAGAAACGATG 60.000 47.826 0.00 0.00 0.00 3.84
3910 6081 2.348666 ACGCTTGATACAGAAACGATGC 59.651 45.455 0.00 0.00 0.00 3.91
3911 6082 2.604914 CGCTTGATACAGAAACGATGCT 59.395 45.455 0.00 0.00 0.00 3.79
3912 6083 3.302092 CGCTTGATACAGAAACGATGCTC 60.302 47.826 0.00 0.00 0.00 4.26
3913 6084 3.302092 GCTTGATACAGAAACGATGCTCG 60.302 47.826 0.00 4.36 46.93 5.03
3954 6154 7.548967 GTTTGAGGAGAGTAGTACATAAAGCT 58.451 38.462 2.52 0.00 0.00 3.74
3956 6156 5.594725 TGAGGAGAGTAGTACATAAAGCTGG 59.405 44.000 2.52 0.00 0.00 4.85
3982 6186 6.002911 CCGTGTAAGTTACGTAAAATCGTTG 58.997 40.000 10.11 0.00 43.80 4.10
4021 6225 4.174009 GGGTCGTGTTCATATCATATCGG 58.826 47.826 0.00 0.00 0.00 4.18
4035 6239 6.997239 ATCATATCGGTGGAATGAATCATG 57.003 37.500 0.00 0.00 33.60 3.07
4060 6264 2.945668 GGGTCATTGGCTATCAACAGTC 59.054 50.000 0.00 0.00 38.31 3.51
4062 6266 3.375299 GGTCATTGGCTATCAACAGTCAC 59.625 47.826 0.00 0.00 38.31 3.67
4109 6325 1.203994 GCGGTTGTAGTCCTTGAGCTA 59.796 52.381 0.00 0.00 0.00 3.32
4115 6331 6.568844 CGGTTGTAGTCCTTGAGCTATCTATC 60.569 46.154 0.00 0.00 0.00 2.08
4117 6333 7.666388 GGTTGTAGTCCTTGAGCTATCTATCTA 59.334 40.741 0.00 0.00 0.00 1.98
4118 6334 8.508875 GTTGTAGTCCTTGAGCTATCTATCTAC 58.491 40.741 0.00 0.00 0.00 2.59
4119 6335 7.980032 TGTAGTCCTTGAGCTATCTATCTACT 58.020 38.462 13.00 0.00 0.00 2.57
4175 6397 2.226437 GTGGTGTCGCTGTGATTTTGAT 59.774 45.455 0.00 0.00 0.00 2.57
4203 6425 0.391528 TGCGCTTGCTGATTGCTCTA 60.392 50.000 9.73 0.00 43.37 2.43
4204 6426 0.942962 GCGCTTGCTGATTGCTCTAT 59.057 50.000 0.00 0.00 43.37 1.98
4241 6463 1.467734 GGACAGACTGCTTGATTGCTG 59.532 52.381 1.25 0.00 37.79 4.41
4245 6467 1.811359 AGACTGCTTGATTGCTGCTTC 59.189 47.619 0.00 0.00 35.70 3.86
4246 6468 1.811359 GACTGCTTGATTGCTGCTTCT 59.189 47.619 0.00 0.00 35.70 2.85
4247 6469 2.228343 GACTGCTTGATTGCTGCTTCTT 59.772 45.455 0.00 0.00 35.70 2.52
4271 8319 4.529716 TTTGTCCCTTTAAACTGGTCCT 57.470 40.909 0.00 0.00 0.00 3.85
4292 8340 4.454504 CCTATGAAACTGTACCAACACCAC 59.545 45.833 0.00 0.00 0.00 4.16
4323 8371 6.529220 TGTACTGCCCAAATAATTTGCTTTT 58.471 32.000 0.00 0.00 39.31 2.27
4343 8564 7.069085 TGCTTTTACGTAGTACTCAATATCCCT 59.931 37.037 0.00 0.00 45.76 4.20
4347 8568 4.227538 CGTAGTACTCAATATCCCTTGCG 58.772 47.826 0.00 0.00 0.00 4.85
4348 8569 3.753294 AGTACTCAATATCCCTTGCGG 57.247 47.619 0.00 0.00 0.00 5.69
4349 8570 3.039011 AGTACTCAATATCCCTTGCGGT 58.961 45.455 0.00 0.00 0.00 5.68
4352 8573 3.697166 ACTCAATATCCCTTGCGGTTTT 58.303 40.909 0.00 0.00 0.00 2.43
4353 8574 4.086457 ACTCAATATCCCTTGCGGTTTTT 58.914 39.130 0.00 0.00 0.00 1.94
4373 8594 0.470341 TTTTTGCGGGGAAAAAGGGG 59.530 50.000 6.72 0.00 32.36 4.79
4376 8597 0.178918 TTGCGGGGAAAAAGGGGAAT 60.179 50.000 0.00 0.00 0.00 3.01
4377 8598 0.705253 TGCGGGGAAAAAGGGGAATA 59.295 50.000 0.00 0.00 0.00 1.75
4407 8637 4.152402 GCGTTTAGAATGACAAGCTTCAGA 59.848 41.667 0.00 0.00 0.00 3.27
4426 8773 2.927618 CGCGGCATTATCGTCCACG 61.928 63.158 0.00 0.00 41.45 4.94
4463 8811 2.609459 GTCGAACCCAGCTACATGATTG 59.391 50.000 0.00 0.00 0.00 2.67
4464 8812 2.499693 TCGAACCCAGCTACATGATTGA 59.500 45.455 0.00 0.00 0.00 2.57
4465 8813 3.134623 TCGAACCCAGCTACATGATTGAT 59.865 43.478 0.00 0.00 0.00 2.57
4466 8814 3.879295 CGAACCCAGCTACATGATTGATT 59.121 43.478 0.00 0.00 0.00 2.57
4467 8815 4.336433 CGAACCCAGCTACATGATTGATTT 59.664 41.667 0.00 0.00 0.00 2.17
4500 8851 1.463056 CAGCAAACGAAGCGATGGTTA 59.537 47.619 0.00 0.00 37.01 2.85
4508 8862 4.189231 ACGAAGCGATGGTTAGCTAATTT 58.811 39.130 9.88 0.00 43.78 1.82
4510 8864 4.270084 CGAAGCGATGGTTAGCTAATTTCA 59.730 41.667 9.88 9.19 43.78 2.69
4596 8950 1.509923 GTCGGTCGGTACAAGGAGG 59.490 63.158 0.00 0.00 0.00 4.30
4598 8952 0.033796 TCGGTCGGTACAAGGAGGAT 60.034 55.000 0.00 0.00 0.00 3.24
4599 8953 0.384669 CGGTCGGTACAAGGAGGATC 59.615 60.000 0.00 0.00 0.00 3.36
4618 8988 1.409064 TCCGATCATGAGTGGTGCTAC 59.591 52.381 13.95 0.00 0.00 3.58
4623 8993 1.155889 CATGAGTGGTGCTACGCAAA 58.844 50.000 0.00 0.00 41.47 3.68
4627 8997 0.884704 AGTGGTGCTACGCAAACAGG 60.885 55.000 0.00 0.00 41.47 4.00
4649 9019 5.585047 AGGAGCACGTAAATAAACAAGATCC 59.415 40.000 0.00 0.00 31.89 3.36
4656 9026 8.385111 CACGTAAATAAACAAGATCCAATACGT 58.615 33.333 0.00 0.00 44.19 3.57
4657 9027 9.585099 ACGTAAATAAACAAGATCCAATACGTA 57.415 29.630 0.00 0.00 42.34 3.57
4658 9028 9.839589 CGTAAATAAACAAGATCCAATACGTAC 57.160 33.333 0.00 0.00 0.00 3.67
4659 9029 9.839589 GTAAATAAACAAGATCCAATACGTACG 57.160 33.333 15.01 15.01 0.00 3.67
4660 9030 7.473027 AATAAACAAGATCCAATACGTACGG 57.527 36.000 21.06 1.40 0.00 4.02
4661 9031 4.724074 AACAAGATCCAATACGTACGGA 57.276 40.909 21.06 12.56 0.00 4.69
4662 9032 4.037858 ACAAGATCCAATACGTACGGAC 57.962 45.455 21.06 10.81 0.00 4.79
4663 9033 3.698040 ACAAGATCCAATACGTACGGACT 59.302 43.478 21.06 12.43 0.00 3.85
4664 9034 4.883585 ACAAGATCCAATACGTACGGACTA 59.116 41.667 21.06 3.15 0.00 2.59
4665 9035 5.210715 CAAGATCCAATACGTACGGACTAC 58.789 45.833 21.06 11.13 0.00 2.73
4694 9064 5.430007 AGAGTAGTACTACATGAACGCTCT 58.570 41.667 29.87 19.37 38.48 4.09
4698 9068 4.267536 AGTACTACATGAACGCTCTACCA 58.732 43.478 0.00 0.00 0.00 3.25
4723 9093 1.144057 CTCGGGCTATGCGTTTCCT 59.856 57.895 0.00 0.00 0.00 3.36
4729 9099 0.521242 GCTATGCGTTTCCTTGCACG 60.521 55.000 0.00 0.00 45.07 5.34
4733 9103 2.830285 GCGTTTCCTTGCACGGTGT 61.830 57.895 9.36 0.00 36.88 4.16
4761 9131 4.988598 CTCTGTTGCCGCCGGTGT 62.989 66.667 15.14 0.00 0.00 4.16
4762 9132 4.980805 TCTGTTGCCGCCGGTGTC 62.981 66.667 15.14 0.19 0.00 3.67
4805 9177 2.954684 GCCTGTCCATGTGGGTCGA 61.955 63.158 0.00 0.00 38.11 4.20
4806 9178 1.676968 CCTGTCCATGTGGGTCGAA 59.323 57.895 0.00 0.00 38.11 3.71
4807 9179 0.391661 CCTGTCCATGTGGGTCGAAG 60.392 60.000 0.00 0.00 38.11 3.79
4808 9180 1.003839 TGTCCATGTGGGTCGAAGC 60.004 57.895 0.00 0.00 38.11 3.86
4809 9181 1.745489 GTCCATGTGGGTCGAAGCC 60.745 63.158 0.00 0.00 38.11 4.35
4810 9182 2.220586 TCCATGTGGGTCGAAGCCA 61.221 57.895 0.00 2.27 38.74 4.75
4811 9183 1.303236 CCATGTGGGTCGAAGCCAA 60.303 57.895 7.25 0.00 38.74 4.52
4812 9184 1.586154 CCATGTGGGTCGAAGCCAAC 61.586 60.000 7.25 0.42 38.74 3.77
4813 9185 1.671054 ATGTGGGTCGAAGCCAACG 60.671 57.895 7.25 0.00 38.74 4.10
4814 9186 2.029964 GTGGGTCGAAGCCAACGA 59.970 61.111 7.25 0.00 38.74 3.85
4815 9187 2.027625 GTGGGTCGAAGCCAACGAG 61.028 63.158 7.25 0.00 40.37 4.18
4816 9188 2.434359 GGGTCGAAGCCAACGAGG 60.434 66.667 0.00 0.00 40.37 4.63
4846 9218 4.084888 CGCGAAAAGGCACGGGAC 62.085 66.667 0.00 0.00 43.19 4.46
4847 9219 2.975799 GCGAAAAGGCACGGGACA 60.976 61.111 0.00 0.00 0.00 4.02
4848 9220 2.943653 CGAAAAGGCACGGGACAC 59.056 61.111 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.816640 ACTTTCGCTTAATCTGTGTGCTATAA 59.183 34.615 0.00 0.00 0.00 0.98
6 7 6.338146 ACTTTCGCTTAATCTGTGTGCTATA 58.662 36.000 0.00 0.00 0.00 1.31
21 22 4.514066 AGATGAAAACGGTTACTTTCGCTT 59.486 37.500 0.00 0.00 34.84 4.68
25 26 6.780706 TCTGAGATGAAAACGGTTACTTTC 57.219 37.500 0.00 0.00 33.10 2.62
34 35 3.182182 TGCGAGATCTGAGATGAAAACG 58.818 45.455 0.00 0.00 0.00 3.60
35 36 3.001127 GCTGCGAGATCTGAGATGAAAAC 59.999 47.826 0.00 0.00 0.00 2.43
36 37 3.193263 GCTGCGAGATCTGAGATGAAAA 58.807 45.455 0.00 0.00 0.00 2.29
37 38 2.167075 TGCTGCGAGATCTGAGATGAAA 59.833 45.455 0.00 0.00 0.00 2.69
38 39 1.753073 TGCTGCGAGATCTGAGATGAA 59.247 47.619 0.00 0.00 0.00 2.57
56 57 2.262211 GCCTTTCCGAATTGATGTTGC 58.738 47.619 0.00 0.00 0.00 4.17
58 59 3.056607 CCTTGCCTTTCCGAATTGATGTT 60.057 43.478 0.00 0.00 0.00 2.71
59 60 2.493278 CCTTGCCTTTCCGAATTGATGT 59.507 45.455 0.00 0.00 0.00 3.06
93 96 1.788229 TGTCGCCTCATTGATCCCTA 58.212 50.000 0.00 0.00 0.00 3.53
98 101 1.959042 GGTGATGTCGCCTCATTGAT 58.041 50.000 5.37 0.00 43.02 2.57
315 318 1.542492 GGTACCTCGACCTCTTCACA 58.458 55.000 4.06 0.00 36.47 3.58
879 1029 0.101759 GAGAGAGCAGAGCAGAGCAG 59.898 60.000 0.00 0.00 0.00 4.24
884 1034 1.406539 GAAGAGGAGAGAGCAGAGCAG 59.593 57.143 0.00 0.00 0.00 4.24
885 1035 1.473258 GAAGAGGAGAGAGCAGAGCA 58.527 55.000 0.00 0.00 0.00 4.26
886 1036 0.746659 GGAAGAGGAGAGAGCAGAGC 59.253 60.000 0.00 0.00 0.00 4.09
887 1037 2.442236 AGGAAGAGGAGAGAGCAGAG 57.558 55.000 0.00 0.00 0.00 3.35
888 1038 2.917713 AAGGAAGAGGAGAGAGCAGA 57.082 50.000 0.00 0.00 0.00 4.26
889 1039 2.168313 GGAAAGGAAGAGGAGAGAGCAG 59.832 54.545 0.00 0.00 0.00 4.24
890 1040 2.183679 GGAAAGGAAGAGGAGAGAGCA 58.816 52.381 0.00 0.00 0.00 4.26
891 1041 1.484653 GGGAAAGGAAGAGGAGAGAGC 59.515 57.143 0.00 0.00 0.00 4.09
894 1044 1.209261 GCTGGGAAAGGAAGAGGAGAG 59.791 57.143 0.00 0.00 0.00 3.20
901 1051 1.078143 CCTCCGCTGGGAAAGGAAG 60.078 63.158 7.14 0.00 43.27 3.46
903 1053 1.990060 CTCCTCCGCTGGGAAAGGA 60.990 63.158 12.78 12.78 43.27 3.36
906 1056 3.717294 GGCTCCTCCGCTGGGAAA 61.717 66.667 0.00 0.00 43.27 3.13
907 1057 4.722535 AGGCTCCTCCGCTGGGAA 62.723 66.667 0.00 0.00 43.27 3.97
938 1089 4.933064 GTGGAGCCGGATCTCGCG 62.933 72.222 20.86 0.00 37.59 5.87
1042 1197 1.449246 CGCCAGGCAAGGAAGAGAG 60.449 63.158 13.30 0.00 0.00 3.20
1052 1207 1.195115 AGAGAAGATAACGCCAGGCA 58.805 50.000 13.30 0.00 0.00 4.75
1055 1210 2.898705 AGCAAGAGAAGATAACGCCAG 58.101 47.619 0.00 0.00 0.00 4.85
1056 1211 3.262420 GAAGCAAGAGAAGATAACGCCA 58.738 45.455 0.00 0.00 0.00 5.69
1068 1223 1.982223 CGACTGAAGACGAAGCAAGAG 59.018 52.381 0.00 0.00 35.37 2.85
1105 1260 9.710818 TGATCTTTAGTCCAATTAGTACTAGGT 57.289 33.333 2.23 0.00 0.00 3.08
1112 1267 8.064336 ACGTAGTGATCTTTAGTCCAATTAGT 57.936 34.615 0.00 0.00 42.51 2.24
1118 1273 8.913487 TGATATACGTAGTGATCTTTAGTCCA 57.087 34.615 0.08 0.00 45.73 4.02
1124 1279 9.121658 TCAACTCTGATATACGTAGTGATCTTT 57.878 33.333 0.08 0.00 45.73 2.52
1127 1282 9.900710 AATTCAACTCTGATATACGTAGTGATC 57.099 33.333 0.08 4.84 45.73 2.92
1129 1284 8.683615 ACAATTCAACTCTGATATACGTAGTGA 58.316 33.333 0.08 0.00 45.73 3.41
1130 1285 8.858003 ACAATTCAACTCTGATATACGTAGTG 57.142 34.615 0.08 0.00 45.73 2.74
1132 1287 7.323895 CGGACAATTCAACTCTGATATACGTAG 59.676 40.741 0.08 0.00 0.00 3.51
1133 1288 7.136772 CGGACAATTCAACTCTGATATACGTA 58.863 38.462 0.00 0.00 0.00 3.57
1136 1291 6.281405 ACCGGACAATTCAACTCTGATATAC 58.719 40.000 9.46 0.00 0.00 1.47
1138 1293 5.359194 ACCGGACAATTCAACTCTGATAT 57.641 39.130 9.46 0.00 0.00 1.63
1139 1294 4.819105 ACCGGACAATTCAACTCTGATA 57.181 40.909 9.46 0.00 0.00 2.15
1144 1299 6.496338 AGATAAAACCGGACAATTCAACTC 57.504 37.500 9.46 0.00 0.00 3.01
1147 1302 6.821665 CCTCTAGATAAAACCGGACAATTCAA 59.178 38.462 9.46 0.00 0.00 2.69
1156 1311 5.597594 ACCTTACTCCTCTAGATAAAACCGG 59.402 44.000 0.00 0.00 0.00 5.28
1158 1313 9.814899 GTTAACCTTACTCCTCTAGATAAAACC 57.185 37.037 0.00 0.00 0.00 3.27
1161 1316 9.118300 CGAGTTAACCTTACTCCTCTAGATAAA 57.882 37.037 0.88 0.00 39.03 1.40
1162 1317 8.270744 ACGAGTTAACCTTACTCCTCTAGATAA 58.729 37.037 0.88 0.00 39.03 1.75
1187 1363 3.433615 CCGAGGAAACAGATCAACAGAAC 59.566 47.826 0.00 0.00 0.00 3.01
1234 1414 3.317993 GGTGGCAGTACAACAATTGAAGT 59.682 43.478 13.59 12.10 0.00 3.01
1268 1448 8.188799 TCGGTCAAACATCAACTAGAGTATAAG 58.811 37.037 0.00 0.00 0.00 1.73
1272 1452 5.970317 TCGGTCAAACATCAACTAGAGTA 57.030 39.130 0.00 0.00 0.00 2.59
1273 1453 4.866508 TCGGTCAAACATCAACTAGAGT 57.133 40.909 0.00 0.00 0.00 3.24
1285 1465 2.621526 AGGTGTCCATTTTCGGTCAAAC 59.378 45.455 0.00 0.00 0.00 2.93
1329 1509 2.599659 GAATTCTTTGGCTTCTTGGCG 58.400 47.619 0.00 0.00 45.14 5.69
1330 1510 2.029918 ACGAATTCTTTGGCTTCTTGGC 60.030 45.455 3.52 0.00 42.18 4.52
1368 1548 4.290155 CGCTCTTGTGCAAAAATAAGTGT 58.710 39.130 0.00 0.00 0.00 3.55
1389 1569 2.342650 CCCATGAACAACCCTGCCG 61.343 63.158 0.00 0.00 0.00 5.69
1396 1576 0.036306 ACCTCGTCCCCATGAACAAC 59.964 55.000 0.00 0.00 0.00 3.32
1420 1600 4.451629 AGTAATCGTCAGGTAACACTGG 57.548 45.455 0.00 0.00 38.98 4.00
1457 1637 6.060028 TCAGCAAACACTGACAAATCTAAC 57.940 37.500 0.00 0.00 41.72 2.34
1467 1660 6.127479 ACCAAAAATTACTCAGCAAACACTGA 60.127 34.615 0.00 0.00 44.32 3.41
1474 1667 3.886505 ACGGACCAAAAATTACTCAGCAA 59.113 39.130 0.00 0.00 0.00 3.91
1532 1737 1.742761 ACCTCCATGAATTCGCACTG 58.257 50.000 0.04 0.00 0.00 3.66
1538 1743 4.342862 TGCTAGCTACCTCCATGAATTC 57.657 45.455 17.23 0.00 0.00 2.17
1604 1809 8.975410 GATGACAAATTTCATCTGATTCACAA 57.025 30.769 11.36 0.00 45.84 3.33
1632 1837 7.466805 TGCAAGTTATCATTTTTCTGAGATCG 58.533 34.615 0.00 0.00 0.00 3.69
1635 1840 9.467258 CTTTTGCAAGTTATCATTTTTCTGAGA 57.533 29.630 0.00 0.00 0.00 3.27
1637 1842 8.075593 GCTTTTGCAAGTTATCATTTTTCTGA 57.924 30.769 0.00 0.00 46.58 3.27
1680 1911 8.768501 TCCTAACAAGCTCTATTCTATCAGAA 57.231 34.615 0.00 0.00 38.78 3.02
1696 1927 7.581011 AAAAATTGCGCTTAATCCTAACAAG 57.419 32.000 9.73 0.00 0.00 3.16
1839 2098 3.903530 AGGGGGAAAGATGTTCACTTT 57.096 42.857 0.00 0.00 39.76 2.66
1854 2113 7.178451 ACTGAACAGACAAATATTTAAAGGGGG 59.822 37.037 8.87 0.00 0.00 5.40
1929 2188 6.154706 ACATCCTAAGTTACCTGGTCAGTAAG 59.845 42.308 0.63 0.00 0.00 2.34
1936 2230 6.499350 TGAAAGTACATCCTAAGTTACCTGGT 59.501 38.462 4.05 4.05 0.00 4.00
1985 4002 7.373617 TGCTCCACCTCATAAAGTAATATCA 57.626 36.000 0.00 0.00 0.00 2.15
1992 4009 4.922206 TGAAATGCTCCACCTCATAAAGT 58.078 39.130 0.00 0.00 0.00 2.66
1993 4010 4.946157 ACTGAAATGCTCCACCTCATAAAG 59.054 41.667 0.00 0.00 0.00 1.85
1996 4013 5.692115 TTACTGAAATGCTCCACCTCATA 57.308 39.130 0.00 0.00 0.00 2.15
1999 4016 5.705609 TTTTTACTGAAATGCTCCACCTC 57.294 39.130 0.00 0.00 0.00 3.85
2000 4017 5.539955 ACATTTTTACTGAAATGCTCCACCT 59.460 36.000 9.53 0.00 46.14 4.00
2001 4018 5.783111 ACATTTTTACTGAAATGCTCCACC 58.217 37.500 9.53 0.00 46.14 4.61
2002 4019 7.224557 ACAAACATTTTTACTGAAATGCTCCAC 59.775 33.333 9.53 0.00 46.14 4.02
2003 4020 7.271511 ACAAACATTTTTACTGAAATGCTCCA 58.728 30.769 9.53 0.00 46.14 3.86
2004 4021 7.713764 ACAAACATTTTTACTGAAATGCTCC 57.286 32.000 9.53 0.00 46.14 4.70
2005 4022 8.816144 TCAACAAACATTTTTACTGAAATGCTC 58.184 29.630 9.53 0.00 46.14 4.26
2007 4024 9.934190 AATCAACAAACATTTTTACTGAAATGC 57.066 25.926 9.53 0.00 46.14 3.56
2066 4093 3.417101 ACGCCCATGTTTTATCAACTCA 58.583 40.909 0.00 0.00 0.00 3.41
2070 4097 3.067461 GCCATACGCCCATGTTTTATCAA 59.933 43.478 0.00 0.00 0.00 2.57
2096 4124 5.105554 ACTCTAGTCCAGTAATTGCTGACAG 60.106 44.000 23.34 16.48 38.70 3.51
2192 4220 5.562248 GCAAAGTCCGTTTCAAAAACAAAAC 59.438 36.000 3.72 0.00 33.12 2.43
2194 4222 4.143305 CGCAAAGTCCGTTTCAAAAACAAA 60.143 37.500 3.72 0.00 0.00 2.83
2197 4225 2.280445 CCGCAAAGTCCGTTTCAAAAAC 59.720 45.455 0.00 0.00 0.00 2.43
2199 4227 1.202313 CCCGCAAAGTCCGTTTCAAAA 60.202 47.619 0.00 0.00 0.00 2.44
2200 4228 0.382515 CCCGCAAAGTCCGTTTCAAA 59.617 50.000 0.00 0.00 0.00 2.69
2201 4229 0.464013 TCCCGCAAAGTCCGTTTCAA 60.464 50.000 0.00 0.00 0.00 2.69
2202 4230 0.250553 ATCCCGCAAAGTCCGTTTCA 60.251 50.000 0.00 0.00 0.00 2.69
2203 4231 1.729284 TATCCCGCAAAGTCCGTTTC 58.271 50.000 0.00 0.00 0.00 2.78
2204 4232 2.413310 ATATCCCGCAAAGTCCGTTT 57.587 45.000 0.00 0.00 0.00 3.60
2205 4233 2.413310 AATATCCCGCAAAGTCCGTT 57.587 45.000 0.00 0.00 0.00 4.44
2206 4234 2.413310 AAATATCCCGCAAAGTCCGT 57.587 45.000 0.00 0.00 0.00 4.69
2207 4235 2.680841 TGAAAATATCCCGCAAAGTCCG 59.319 45.455 0.00 0.00 0.00 4.79
2247 4275 3.347216 TCCAAAGGCATCAAGAAGTAGC 58.653 45.455 0.00 0.00 0.00 3.58
2248 4276 6.521151 AAATCCAAAGGCATCAAGAAGTAG 57.479 37.500 0.00 0.00 0.00 2.57
2453 4481 4.082408 GGGCATTAACTTCCAACCAACTAC 60.082 45.833 0.00 0.00 0.00 2.73
2484 4512 1.303643 CCAACCACCCTCCTGAAGC 60.304 63.158 0.00 0.00 0.00 3.86
2531 4559 7.833285 ACCACAAAGAAATGTTACCATAACT 57.167 32.000 0.81 0.00 0.00 2.24
2549 4577 7.593273 CGCAGAAGTATCAAAATAAAACCACAA 59.407 33.333 0.00 0.00 0.00 3.33
2565 4593 4.218417 ACCTTTGCATTTTCGCAGAAGTAT 59.782 37.500 0.00 0.00 45.90 2.12
2566 4594 3.568007 ACCTTTGCATTTTCGCAGAAGTA 59.432 39.130 0.00 0.00 45.90 2.24
2567 4595 2.362077 ACCTTTGCATTTTCGCAGAAGT 59.638 40.909 0.00 0.00 45.90 3.01
2568 4596 2.727798 CACCTTTGCATTTTCGCAGAAG 59.272 45.455 0.00 0.00 45.90 2.85
2569 4597 2.360483 TCACCTTTGCATTTTCGCAGAA 59.640 40.909 0.00 0.00 45.90 3.02
2570 4598 1.952990 TCACCTTTGCATTTTCGCAGA 59.047 42.857 0.00 0.00 44.14 4.26
2571 4599 2.420628 TCACCTTTGCATTTTCGCAG 57.579 45.000 0.00 0.00 44.14 5.18
2572 4600 2.159184 TGTTCACCTTTGCATTTTCGCA 60.159 40.909 0.00 0.00 41.03 5.10
2573 4601 2.468831 TGTTCACCTTTGCATTTTCGC 58.531 42.857 0.00 0.00 0.00 4.70
2574 4602 3.429543 CCATGTTCACCTTTGCATTTTCG 59.570 43.478 0.00 0.00 0.00 3.46
2575 4603 3.747529 CCCATGTTCACCTTTGCATTTTC 59.252 43.478 0.00 0.00 0.00 2.29
2576 4604 3.136260 ACCCATGTTCACCTTTGCATTTT 59.864 39.130 0.00 0.00 0.00 1.82
2577 4605 2.705127 ACCCATGTTCACCTTTGCATTT 59.295 40.909 0.00 0.00 0.00 2.32
2578 4606 2.037511 CACCCATGTTCACCTTTGCATT 59.962 45.455 0.00 0.00 0.00 3.56
2579 4607 1.619827 CACCCATGTTCACCTTTGCAT 59.380 47.619 0.00 0.00 0.00 3.96
2580 4608 1.039068 CACCCATGTTCACCTTTGCA 58.961 50.000 0.00 0.00 0.00 4.08
2581 4609 0.319813 GCACCCATGTTCACCTTTGC 60.320 55.000 0.00 0.00 0.00 3.68
2582 4610 0.039256 CGCACCCATGTTCACCTTTG 60.039 55.000 0.00 0.00 0.00 2.77
2583 4611 1.805428 GCGCACCCATGTTCACCTTT 61.805 55.000 0.30 0.00 0.00 3.11
2584 4612 2.268076 GCGCACCCATGTTCACCTT 61.268 57.895 0.30 0.00 0.00 3.50
2585 4613 2.672996 GCGCACCCATGTTCACCT 60.673 61.111 0.30 0.00 0.00 4.00
2586 4614 4.101790 CGCGCACCCATGTTCACC 62.102 66.667 8.75 0.00 0.00 4.02
2587 4615 3.353836 ACGCGCACCCATGTTCAC 61.354 61.111 5.73 0.00 0.00 3.18
2588 4616 3.353029 CACGCGCACCCATGTTCA 61.353 61.111 5.73 0.00 0.00 3.18
2589 4617 4.759096 GCACGCGCACCCATGTTC 62.759 66.667 5.73 0.00 38.36 3.18
2600 4628 1.365368 TATTCACATGGGTGCACGCG 61.365 55.000 26.42 16.69 44.87 6.01
2601 4629 1.024271 ATATTCACATGGGTGCACGC 58.976 50.000 25.75 25.75 44.87 5.34
2602 4630 4.891627 TTAATATTCACATGGGTGCACG 57.108 40.909 11.45 0.00 44.87 5.34
2603 4631 7.264221 TGAATTTAATATTCACATGGGTGCAC 58.736 34.615 8.80 8.80 44.87 4.57
2604 4632 7.415592 TGAATTTAATATTCACATGGGTGCA 57.584 32.000 0.00 0.00 44.87 4.57
2605 4633 9.979578 TTATGAATTTAATATTCACATGGGTGC 57.020 29.630 12.33 0.00 44.87 5.01
2653 4681 8.931775 GGTTCATACCGCAAAATTTTAGAATTT 58.068 29.630 2.44 0.00 39.51 1.82
2654 4682 8.474006 GGTTCATACCGCAAAATTTTAGAATT 57.526 30.769 2.44 0.00 34.24 2.17
2670 4698 6.750148 AGAATGATCGACTAAGGTTCATACC 58.250 40.000 0.00 0.00 45.39 2.73
2671 4699 8.569641 AGTAGAATGATCGACTAAGGTTCATAC 58.430 37.037 0.00 0.00 39.41 2.39
2672 4700 8.693120 AGTAGAATGATCGACTAAGGTTCATA 57.307 34.615 0.00 0.00 39.41 2.15
2673 4701 7.285629 TGAGTAGAATGATCGACTAAGGTTCAT 59.714 37.037 0.00 0.00 40.99 2.57
2674 4702 6.602009 TGAGTAGAATGATCGACTAAGGTTCA 59.398 38.462 0.00 0.00 40.99 3.18
2675 4703 7.028926 TGAGTAGAATGATCGACTAAGGTTC 57.971 40.000 0.00 0.00 40.99 3.62
2676 4704 7.033530 CTGAGTAGAATGATCGACTAAGGTT 57.966 40.000 0.00 0.00 40.99 3.50
2677 4705 6.627395 CTGAGTAGAATGATCGACTAAGGT 57.373 41.667 0.00 0.00 40.99 3.50
2679 4707 6.038825 ACACCTGAGTAGAATGATCGACTAAG 59.961 42.308 0.00 0.00 40.99 2.18
2680 4708 5.886474 ACACCTGAGTAGAATGATCGACTAA 59.114 40.000 0.00 0.00 40.99 2.24
2681 4709 5.297029 CACACCTGAGTAGAATGATCGACTA 59.703 44.000 0.00 0.00 40.99 2.59
2682 4710 4.097135 CACACCTGAGTAGAATGATCGACT 59.903 45.833 0.00 0.00 43.22 4.18
2683 4711 4.096532 TCACACCTGAGTAGAATGATCGAC 59.903 45.833 0.00 0.00 0.00 4.20
2684 4712 4.270008 TCACACCTGAGTAGAATGATCGA 58.730 43.478 0.00 0.00 0.00 3.59
2685 4713 4.639135 TCACACCTGAGTAGAATGATCG 57.361 45.455 0.00 0.00 0.00 3.69
2686 4714 5.971763 ACTTCACACCTGAGTAGAATGATC 58.028 41.667 0.00 0.00 0.00 2.92
2687 4715 6.365970 AACTTCACACCTGAGTAGAATGAT 57.634 37.500 0.00 0.00 0.00 2.45
2688 4716 5.808366 AACTTCACACCTGAGTAGAATGA 57.192 39.130 0.00 0.00 0.00 2.57
2689 4717 5.991606 TGAAACTTCACACCTGAGTAGAATG 59.008 40.000 0.00 0.00 31.01 2.67
2690 4718 6.174720 TGAAACTTCACACCTGAGTAGAAT 57.825 37.500 0.00 0.00 31.01 2.40
2691 4719 5.607939 TGAAACTTCACACCTGAGTAGAA 57.392 39.130 0.00 0.00 31.01 2.10
2692 4720 5.304357 TCATGAAACTTCACACCTGAGTAGA 59.696 40.000 0.00 0.00 40.49 2.59
2693 4721 5.541845 TCATGAAACTTCACACCTGAGTAG 58.458 41.667 0.00 0.00 40.49 2.57
2694 4722 5.545063 TCATGAAACTTCACACCTGAGTA 57.455 39.130 0.00 0.00 40.49 2.59
2695 4723 4.422073 TCATGAAACTTCACACCTGAGT 57.578 40.909 0.00 0.00 40.49 3.41
2696 4724 4.758674 ACATCATGAAACTTCACACCTGAG 59.241 41.667 0.00 0.00 40.49 3.35
2697 4725 4.717877 ACATCATGAAACTTCACACCTGA 58.282 39.130 0.00 0.00 40.49 3.86
2698 4726 6.748333 ATACATCATGAAACTTCACACCTG 57.252 37.500 0.00 0.00 40.49 4.00
2699 4727 6.942005 TCAATACATCATGAAACTTCACACCT 59.058 34.615 0.00 0.00 40.49 4.00
2700 4728 7.023575 GTCAATACATCATGAAACTTCACACC 58.976 38.462 0.00 0.00 40.49 4.16
2701 4729 7.535258 GTGTCAATACATCATGAAACTTCACAC 59.465 37.037 0.00 4.57 37.76 3.82
2702 4730 7.308529 GGTGTCAATACATCATGAAACTTCACA 60.309 37.037 0.00 0.00 37.76 3.58
2703 4731 7.023575 GGTGTCAATACATCATGAAACTTCAC 58.976 38.462 0.00 2.74 37.76 3.18
2704 4732 6.150976 GGGTGTCAATACATCATGAAACTTCA 59.849 38.462 0.00 0.00 38.58 3.02
2705 4733 6.150976 TGGGTGTCAATACATCATGAAACTTC 59.849 38.462 0.00 0.00 38.58 3.01
2706 4734 6.009589 TGGGTGTCAATACATCATGAAACTT 58.990 36.000 0.00 0.00 38.58 2.66
2707 4735 5.569355 TGGGTGTCAATACATCATGAAACT 58.431 37.500 0.00 0.00 38.58 2.66
2708 4736 5.895636 TGGGTGTCAATACATCATGAAAC 57.104 39.130 0.00 0.00 38.58 2.78
2709 4737 5.360429 CCATGGGTGTCAATACATCATGAAA 59.640 40.000 2.85 0.00 44.28 2.69
2710 4738 4.888823 CCATGGGTGTCAATACATCATGAA 59.111 41.667 2.85 0.00 44.28 2.57
2711 4739 4.079844 ACCATGGGTGTCAATACATCATGA 60.080 41.667 18.09 0.00 44.28 3.07
2712 4740 4.209538 ACCATGGGTGTCAATACATCATG 58.790 43.478 18.09 13.25 42.90 3.07
2713 4741 4.524802 ACCATGGGTGTCAATACATCAT 57.475 40.909 18.09 0.00 38.58 2.45
2714 4742 5.645056 ATACCATGGGTGTCAATACATCA 57.355 39.130 18.09 0.00 38.58 3.07
2715 4743 6.299141 AGAATACCATGGGTGTCAATACATC 58.701 40.000 18.09 0.46 38.08 3.06
2716 4744 6.266131 AGAATACCATGGGTGTCAATACAT 57.734 37.500 18.09 0.00 38.08 2.29
2717 4745 5.708736 AGAATACCATGGGTGTCAATACA 57.291 39.130 18.09 0.00 36.19 2.29
2718 4746 7.226720 CACTAAGAATACCATGGGTGTCAATAC 59.773 40.741 18.09 0.00 36.19 1.89
2719 4747 7.126573 TCACTAAGAATACCATGGGTGTCAATA 59.873 37.037 18.09 0.00 36.19 1.90
2720 4748 6.069673 TCACTAAGAATACCATGGGTGTCAAT 60.070 38.462 18.09 5.69 36.19 2.57
2721 4749 5.249622 TCACTAAGAATACCATGGGTGTCAA 59.750 40.000 18.09 1.84 36.19 3.18
2722 4750 4.780554 TCACTAAGAATACCATGGGTGTCA 59.219 41.667 18.09 0.00 36.19 3.58
2723 4751 5.353394 TCACTAAGAATACCATGGGTGTC 57.647 43.478 18.09 9.62 36.19 3.67
2724 4752 5.487488 TCTTCACTAAGAATACCATGGGTGT 59.513 40.000 18.09 0.00 38.81 4.16
2725 4753 5.989477 TCTTCACTAAGAATACCATGGGTG 58.011 41.667 18.09 11.64 38.81 4.61
2726 4754 6.636454 TTCTTCACTAAGAATACCATGGGT 57.364 37.500 18.09 4.30 44.85 4.51
2737 4765 7.021196 GCGCATTTGTATTTTCTTCACTAAGA 58.979 34.615 0.30 0.00 40.03 2.10
2738 4766 6.251376 GGCGCATTTGTATTTTCTTCACTAAG 59.749 38.462 10.83 0.00 0.00 2.18
2739 4767 6.072175 AGGCGCATTTGTATTTTCTTCACTAA 60.072 34.615 10.83 0.00 0.00 2.24
2740 4768 5.414454 AGGCGCATTTGTATTTTCTTCACTA 59.586 36.000 10.83 0.00 0.00 2.74
2741 4769 4.218417 AGGCGCATTTGTATTTTCTTCACT 59.782 37.500 10.83 0.00 0.00 3.41
2742 4770 4.485163 AGGCGCATTTGTATTTTCTTCAC 58.515 39.130 10.83 0.00 0.00 3.18
2743 4771 4.782019 AGGCGCATTTGTATTTTCTTCA 57.218 36.364 10.83 0.00 0.00 3.02
2744 4772 7.639945 AGTATAGGCGCATTTGTATTTTCTTC 58.360 34.615 10.83 0.00 0.00 2.87
2745 4773 7.568199 AGTATAGGCGCATTTGTATTTTCTT 57.432 32.000 10.83 0.00 0.00 2.52
2746 4774 8.848474 ATAGTATAGGCGCATTTGTATTTTCT 57.152 30.769 10.83 0.00 0.00 2.52
2747 4775 9.893305 AAATAGTATAGGCGCATTTGTATTTTC 57.107 29.630 10.83 0.00 0.00 2.29
2757 4785 9.720769 ACTGTTTAATAAATAGTATAGGCGCAT 57.279 29.630 10.83 3.98 40.44 4.73
2758 4786 8.984764 CACTGTTTAATAAATAGTATAGGCGCA 58.015 33.333 10.83 0.00 40.29 6.09
2759 4787 8.985805 ACACTGTTTAATAAATAGTATAGGCGC 58.014 33.333 13.46 0.00 40.29 6.53
2823 4851 1.528292 CCGTGGCAATCCGGGAAAAA 61.528 55.000 0.00 0.00 40.54 1.94
2824 4852 1.974343 CCGTGGCAATCCGGGAAAA 60.974 57.895 0.00 0.00 40.54 2.29
2825 4853 2.204865 ATCCGTGGCAATCCGGGAAA 62.205 55.000 14.12 0.00 44.32 3.13
2826 4854 2.675242 ATCCGTGGCAATCCGGGAA 61.675 57.895 14.12 0.00 44.32 3.97
2827 4855 3.087253 ATCCGTGGCAATCCGGGA 61.087 61.111 14.12 0.00 44.32 5.14
2828 4856 2.901840 CATCCGTGGCAATCCGGG 60.902 66.667 14.12 0.00 44.32 5.73
2829 4857 2.124736 ACATCCGTGGCAATCCGG 60.125 61.111 8.59 8.59 45.55 5.14
2830 4858 1.024046 TTCACATCCGTGGCAATCCG 61.024 55.000 0.00 0.00 43.79 4.18
2831 4859 1.135402 GTTTCACATCCGTGGCAATCC 60.135 52.381 0.00 0.00 43.79 3.01
2832 4860 1.812571 AGTTTCACATCCGTGGCAATC 59.187 47.619 0.00 0.00 43.79 2.67
2833 4861 1.909700 AGTTTCACATCCGTGGCAAT 58.090 45.000 0.00 0.00 43.79 3.56
2834 4862 1.606668 GAAGTTTCACATCCGTGGCAA 59.393 47.619 0.00 0.00 43.79 4.52
2835 4863 1.234821 GAAGTTTCACATCCGTGGCA 58.765 50.000 0.00 0.00 43.79 4.92
2836 4864 1.234821 TGAAGTTTCACATCCGTGGC 58.765 50.000 0.00 0.00 43.79 5.01
2837 4865 4.496341 GCATATGAAGTTTCACATCCGTGG 60.496 45.833 6.97 0.00 43.79 4.94
2838 4866 4.591202 GCATATGAAGTTTCACATCCGTG 58.409 43.478 6.97 0.00 45.08 4.94
2839 4867 3.309682 CGCATATGAAGTTTCACATCCGT 59.690 43.478 6.97 0.00 40.49 4.69
2840 4868 3.555547 TCGCATATGAAGTTTCACATCCG 59.444 43.478 6.97 0.00 40.49 4.18
2841 4869 4.572389 ACTCGCATATGAAGTTTCACATCC 59.428 41.667 6.97 0.00 40.49 3.51
2842 4870 5.725110 ACTCGCATATGAAGTTTCACATC 57.275 39.130 6.97 0.00 40.49 3.06
2843 4871 7.385205 GGTATACTCGCATATGAAGTTTCACAT 59.615 37.037 6.97 2.27 40.49 3.21
2844 4872 6.700081 GGTATACTCGCATATGAAGTTTCACA 59.300 38.462 6.97 0.00 40.49 3.58
2845 4873 6.129168 CGGTATACTCGCATATGAAGTTTCAC 60.129 42.308 6.97 7.42 40.49 3.18
2846 4874 5.918576 CGGTATACTCGCATATGAAGTTTCA 59.081 40.000 6.97 0.00 42.14 2.69
2847 4875 5.345202 CCGGTATACTCGCATATGAAGTTTC 59.655 44.000 6.97 3.70 0.00 2.78
2848 4876 5.221382 ACCGGTATACTCGCATATGAAGTTT 60.221 40.000 4.49 6.85 0.00 2.66
2849 4877 4.280174 ACCGGTATACTCGCATATGAAGTT 59.720 41.667 4.49 3.51 0.00 2.66
2850 4878 3.825014 ACCGGTATACTCGCATATGAAGT 59.175 43.478 4.49 11.22 0.00 3.01
2851 4879 4.436242 ACCGGTATACTCGCATATGAAG 57.564 45.455 4.49 5.46 0.00 3.02
2852 4880 4.278919 TCAACCGGTATACTCGCATATGAA 59.721 41.667 8.00 0.00 0.00 2.57
2853 4881 3.822167 TCAACCGGTATACTCGCATATGA 59.178 43.478 8.00 0.00 0.00 2.15
2854 4882 3.918591 GTCAACCGGTATACTCGCATATG 59.081 47.826 8.00 0.00 0.00 1.78
2855 4883 3.825014 AGTCAACCGGTATACTCGCATAT 59.175 43.478 8.00 0.00 0.00 1.78
2856 4884 3.216800 AGTCAACCGGTATACTCGCATA 58.783 45.455 8.00 0.00 0.00 3.14
2857 4885 2.029623 AGTCAACCGGTATACTCGCAT 58.970 47.619 8.00 0.00 0.00 4.73
2858 4886 1.466856 AGTCAACCGGTATACTCGCA 58.533 50.000 8.00 0.00 0.00 5.10
2859 4887 3.004106 ACATAGTCAACCGGTATACTCGC 59.996 47.826 21.47 3.59 0.00 5.03
2860 4888 4.825546 ACATAGTCAACCGGTATACTCG 57.174 45.455 21.47 16.75 0.00 4.18
2903 4931 2.890311 TGGACGCAGATTTGGTGAAAAT 59.110 40.909 0.00 0.00 41.33 1.82
2904 4932 2.302260 TGGACGCAGATTTGGTGAAAA 58.698 42.857 0.00 0.00 0.00 2.29
2905 4933 1.974265 TGGACGCAGATTTGGTGAAA 58.026 45.000 0.00 0.00 0.00 2.69
2906 4934 2.198827 ATGGACGCAGATTTGGTGAA 57.801 45.000 0.00 0.00 0.00 3.18
2907 4935 2.236146 AGTATGGACGCAGATTTGGTGA 59.764 45.455 0.00 0.00 0.00 4.02
2908 4936 2.632377 AGTATGGACGCAGATTTGGTG 58.368 47.619 0.00 0.00 0.00 4.17
2909 4937 3.055094 AGAAGTATGGACGCAGATTTGGT 60.055 43.478 0.00 0.00 0.00 3.67
2910 4938 3.310774 CAGAAGTATGGACGCAGATTTGG 59.689 47.826 0.00 0.00 0.00 3.28
2911 4939 3.935203 ACAGAAGTATGGACGCAGATTTG 59.065 43.478 0.00 0.00 0.00 2.32
2912 4940 4.184629 GACAGAAGTATGGACGCAGATTT 58.815 43.478 0.00 0.00 0.00 2.17
2913 4941 3.735208 CGACAGAAGTATGGACGCAGATT 60.735 47.826 0.00 0.00 0.00 2.40
2914 4942 2.223595 CGACAGAAGTATGGACGCAGAT 60.224 50.000 0.00 0.00 0.00 2.90
2915 4943 1.132453 CGACAGAAGTATGGACGCAGA 59.868 52.381 0.00 0.00 0.00 4.26
2916 4944 1.550065 CGACAGAAGTATGGACGCAG 58.450 55.000 0.00 0.00 0.00 5.18
2917 4945 0.457853 GCGACAGAAGTATGGACGCA 60.458 55.000 0.00 0.00 43.82 5.24
2918 4946 0.179134 AGCGACAGAAGTATGGACGC 60.179 55.000 0.00 0.00 44.29 5.19
2919 4947 3.627732 ATAGCGACAGAAGTATGGACG 57.372 47.619 0.00 0.00 0.00 4.79
2920 4948 4.979197 CAGAATAGCGACAGAAGTATGGAC 59.021 45.833 0.00 0.00 0.00 4.02
2921 4949 4.038042 CCAGAATAGCGACAGAAGTATGGA 59.962 45.833 0.00 0.00 0.00 3.41
2922 4950 4.202161 ACCAGAATAGCGACAGAAGTATGG 60.202 45.833 0.00 0.00 0.00 2.74
2923 4951 4.938080 ACCAGAATAGCGACAGAAGTATG 58.062 43.478 0.00 0.00 0.00 2.39
2942 4970 7.573710 AGAACAAATATATCTGTAGCCAACCA 58.426 34.615 0.00 0.00 0.00 3.67
2981 5011 7.159644 CGCGATAATTTGAACAGTGAATTTTG 58.840 34.615 0.00 0.00 0.00 2.44
2985 5015 4.342772 GCGCGATAATTTGAACAGTGAAT 58.657 39.130 12.10 0.00 0.00 2.57
3045 5075 3.142174 GTCCTGAACTTTTCTGTCCTGG 58.858 50.000 0.00 0.00 0.00 4.45
3104 5169 5.709631 TGGCTTGAAAATCATGTACTGCTAA 59.290 36.000 0.00 0.00 0.00 3.09
3105 5170 5.252547 TGGCTTGAAAATCATGTACTGCTA 58.747 37.500 0.00 0.00 0.00 3.49
3262 5385 9.445878 TCTTTCATCTGATATGGCTTGAATATC 57.554 33.333 0.00 0.00 37.47 1.63
3307 5430 5.128827 CCTTGTGGCTCTAGGATTGTACTTA 59.871 44.000 10.92 0.00 40.60 2.24
3337 5460 5.747565 TGACTGAACACAAATGAAATCGTC 58.252 37.500 0.00 0.00 0.00 4.20
3338 5461 5.749596 TGACTGAACACAAATGAAATCGT 57.250 34.783 0.00 0.00 0.00 3.73
3339 5462 7.080099 AGATTGACTGAACACAAATGAAATCG 58.920 34.615 0.00 0.00 0.00 3.34
3409 5532 3.564235 TTGCATGTTCTTAGCTGCTTG 57.436 42.857 7.79 1.36 35.66 4.01
3410 5533 4.038402 ACTTTTGCATGTTCTTAGCTGCTT 59.962 37.500 7.79 0.00 35.66 3.91
3463 5586 4.189231 AGCATCTGACCGTTGTATAAACC 58.811 43.478 0.00 0.00 0.00 3.27
3464 5587 5.796350 AAGCATCTGACCGTTGTATAAAC 57.204 39.130 0.00 0.00 0.00 2.01
3465 5588 5.935206 TCAAAGCATCTGACCGTTGTATAAA 59.065 36.000 0.00 0.00 0.00 1.40
3466 5589 5.483811 TCAAAGCATCTGACCGTTGTATAA 58.516 37.500 0.00 0.00 0.00 0.98
3467 5590 5.079689 TCAAAGCATCTGACCGTTGTATA 57.920 39.130 0.00 0.00 0.00 1.47
3468 5591 3.937814 TCAAAGCATCTGACCGTTGTAT 58.062 40.909 0.00 0.00 0.00 2.29
3469 5592 3.394674 TCAAAGCATCTGACCGTTGTA 57.605 42.857 0.00 0.00 0.00 2.41
3470 5593 2.254546 TCAAAGCATCTGACCGTTGT 57.745 45.000 0.00 0.00 0.00 3.32
3471 5594 3.837213 ATTCAAAGCATCTGACCGTTG 57.163 42.857 0.00 1.34 0.00 4.10
3472 5595 4.853924 AAATTCAAAGCATCTGACCGTT 57.146 36.364 0.00 0.00 0.00 4.44
3473 5596 4.278170 TCAAAATTCAAAGCATCTGACCGT 59.722 37.500 0.00 0.00 0.00 4.83
3474 5597 4.797471 TCAAAATTCAAAGCATCTGACCG 58.203 39.130 0.00 0.00 0.00 4.79
3475 5598 5.984926 TGTTCAAAATTCAAAGCATCTGACC 59.015 36.000 0.00 0.00 0.00 4.02
3553 5721 6.492007 AATCTCTGCACAAACAATGAGTAG 57.508 37.500 0.00 0.00 34.51 2.57
3555 5723 5.508489 CCAAATCTCTGCACAAACAATGAGT 60.508 40.000 0.00 0.00 0.00 3.41
3557 5725 4.262121 CCCAAATCTCTGCACAAACAATGA 60.262 41.667 0.00 0.00 0.00 2.57
3559 5727 3.896888 TCCCAAATCTCTGCACAAACAAT 59.103 39.130 0.00 0.00 0.00 2.71
3560 5728 3.068024 GTCCCAAATCTCTGCACAAACAA 59.932 43.478 0.00 0.00 0.00 2.83
3615 5783 1.091771 CCACTATGGTCTGCGCAAGG 61.092 60.000 13.05 0.00 32.13 3.61
3642 5810 3.854240 CAGGATTCGATACGATGATTCCG 59.146 47.826 0.00 0.00 35.23 4.30
3654 5822 0.103208 GCGTGAGGTCAGGATTCGAT 59.897 55.000 3.88 0.00 33.92 3.59
3701 5869 3.206150 TGTGAAAGAGAAGACAGCAACC 58.794 45.455 0.00 0.00 0.00 3.77
3710 5878 2.289002 AGCGCAACTTGTGAAAGAGAAG 59.711 45.455 11.47 0.00 0.00 2.85
3770 5938 2.862536 CTGCATCCATACAGTTCTCACG 59.137 50.000 0.00 0.00 0.00 4.35
3774 5942 2.681976 GCACCTGCATCCATACAGTTCT 60.682 50.000 0.00 0.00 41.59 3.01
3853 6021 4.533222 ACGCCGAGTTTTTATTTGTTCAG 58.467 39.130 0.00 0.00 0.00 3.02
3921 6092 0.861837 CTCTCCTCAAACGTGTGCAC 59.138 55.000 10.75 10.75 0.00 4.57
3954 6154 4.576216 TTTACGTAACTTACACGGACCA 57.424 40.909 7.70 0.00 43.59 4.02
3956 6156 5.342259 ACGATTTTACGTAACTTACACGGAC 59.658 40.000 7.70 0.00 44.72 4.79
3982 6186 2.613506 CCCGAACCAGCGACAAACC 61.614 63.158 0.00 0.00 0.00 3.27
4006 6210 7.905604 TTCATTCCACCGATATGATATGAAC 57.094 36.000 0.00 0.00 0.00 3.18
4021 6225 3.633986 GACCCTTCCATGATTCATTCCAC 59.366 47.826 0.00 0.00 0.00 4.02
4035 6239 2.952310 GTTGATAGCCAATGACCCTTCC 59.048 50.000 0.00 0.00 37.08 3.46
4109 6325 6.104094 AGGACAGAGGAAAGGAGTAGATAGAT 59.896 42.308 0.00 0.00 0.00 1.98
4115 6331 2.167487 GCAGGACAGAGGAAAGGAGTAG 59.833 54.545 0.00 0.00 0.00 2.57
4117 6333 0.980423 GCAGGACAGAGGAAAGGAGT 59.020 55.000 0.00 0.00 0.00 3.85
4118 6334 1.066286 CAGCAGGACAGAGGAAAGGAG 60.066 57.143 0.00 0.00 0.00 3.69
4119 6335 0.979665 CAGCAGGACAGAGGAAAGGA 59.020 55.000 0.00 0.00 0.00 3.36
4203 6425 7.183475 AGTCTGTCCCCATTATGATTGCTATAT 59.817 37.037 0.00 0.00 0.00 0.86
4204 6426 6.501805 AGTCTGTCCCCATTATGATTGCTATA 59.498 38.462 0.00 0.00 0.00 1.31
4213 6435 2.947652 CAAGCAGTCTGTCCCCATTATG 59.052 50.000 0.93 0.00 0.00 1.90
4228 6450 2.228103 TCAAGAAGCAGCAATCAAGCAG 59.772 45.455 0.00 0.00 36.85 4.24
4241 6463 6.642540 CAGTTTAAAGGGACAAATCAAGAAGC 59.357 38.462 0.00 0.00 0.00 3.86
4245 6467 6.405278 ACCAGTTTAAAGGGACAAATCAAG 57.595 37.500 11.76 0.00 0.00 3.02
4246 6468 5.303333 GGACCAGTTTAAAGGGACAAATCAA 59.697 40.000 11.76 0.00 0.00 2.57
4247 6469 4.830600 GGACCAGTTTAAAGGGACAAATCA 59.169 41.667 11.76 0.00 0.00 2.57
4271 8319 5.060506 CAGTGGTGTTGGTACAGTTTCATA 58.939 41.667 0.00 0.00 42.39 2.15
4292 8340 5.446143 TTATTTGGGCAGTACAACAACAG 57.554 39.130 0.00 0.00 0.00 3.16
4303 8351 5.637387 ACGTAAAAGCAAATTATTTGGGCAG 59.363 36.000 17.89 0.00 40.94 4.85
4323 8371 5.049198 CGCAAGGGATATTGAGTACTACGTA 60.049 44.000 0.00 0.00 31.55 3.57
4355 8576 0.398664 TCCCCTTTTTCCCCGCAAAA 60.399 50.000 0.00 0.00 0.00 2.44
4357 8578 0.178918 ATTCCCCTTTTTCCCCGCAA 60.179 50.000 0.00 0.00 0.00 4.85
4358 8579 0.705253 TATTCCCCTTTTTCCCCGCA 59.295 50.000 0.00 0.00 0.00 5.69
4359 8580 1.961394 GATATTCCCCTTTTTCCCCGC 59.039 52.381 0.00 0.00 0.00 6.13
4373 8594 6.260050 TGTCATTCTAAACGCAAGGGATATTC 59.740 38.462 0.00 0.00 46.39 1.75
4376 8597 5.092554 TGTCATTCTAAACGCAAGGGATA 57.907 39.130 0.00 0.00 46.39 2.59
4377 8598 3.950397 TGTCATTCTAAACGCAAGGGAT 58.050 40.909 0.00 0.00 46.39 3.85
4394 8624 1.664649 CCGCGTCTGAAGCTTGTCA 60.665 57.895 2.10 0.00 0.00 3.58
4407 8637 1.881252 GTGGACGATAATGCCGCGT 60.881 57.895 4.92 0.00 41.45 6.01
4447 8795 7.118723 TCTAAAAATCAATCATGTAGCTGGGT 58.881 34.615 0.00 0.00 0.00 4.51
4463 8811 5.551760 TTGCTGCAGCTACTCTAAAAATC 57.448 39.130 36.61 5.77 42.66 2.17
4464 8812 5.617751 CGTTTGCTGCAGCTACTCTAAAAAT 60.618 40.000 36.61 0.00 42.66 1.82
4465 8813 4.319477 CGTTTGCTGCAGCTACTCTAAAAA 60.319 41.667 36.61 23.20 42.66 1.94
4466 8814 3.186409 CGTTTGCTGCAGCTACTCTAAAA 59.814 43.478 36.61 23.88 42.66 1.52
4467 8815 2.736721 CGTTTGCTGCAGCTACTCTAAA 59.263 45.455 36.61 24.56 42.66 1.85
4500 8851 7.122138 TCACATCTCAGATCTGAAATTAGCT 57.878 36.000 25.09 3.36 39.39 3.32
4508 8862 2.295629 GCCGATCACATCTCAGATCTGA 59.704 50.000 23.75 23.75 38.75 3.27
4510 8864 1.269174 CGCCGATCACATCTCAGATCT 59.731 52.381 0.00 0.00 38.75 2.75
4596 8950 1.069823 AGCACCACTCATGATCGGATC 59.930 52.381 15.59 11.07 0.00 3.36
4598 8952 1.409064 GTAGCACCACTCATGATCGGA 59.591 52.381 15.59 0.00 0.00 4.55
4599 8953 1.858091 GTAGCACCACTCATGATCGG 58.142 55.000 8.63 8.63 0.00 4.18
4600 8954 1.481240 CGTAGCACCACTCATGATCG 58.519 55.000 0.00 0.00 0.00 3.69
4618 8988 0.584396 TTTACGTGCTCCTGTTTGCG 59.416 50.000 0.00 0.00 0.00 4.85
4623 8993 5.302360 TCTTGTTTATTTACGTGCTCCTGT 58.698 37.500 0.00 0.00 0.00 4.00
4627 8997 6.417191 TGGATCTTGTTTATTTACGTGCTC 57.583 37.500 0.00 0.00 0.00 4.26
4667 9037 7.495901 AGCGTTCATGTAGTACTACTCTAGTA 58.504 38.462 28.56 11.85 40.14 1.82
4668 9038 6.347696 AGCGTTCATGTAGTACTACTCTAGT 58.652 40.000 28.56 10.80 42.68 2.57
4669 9039 6.702723 AGAGCGTTCATGTAGTACTACTCTAG 59.297 42.308 28.56 17.29 37.00 2.43
4670 9040 6.580788 AGAGCGTTCATGTAGTACTACTCTA 58.419 40.000 28.56 13.18 37.00 2.43
4671 9041 5.430007 AGAGCGTTCATGTAGTACTACTCT 58.570 41.667 28.56 18.83 37.00 3.24
4672 9042 5.738118 AGAGCGTTCATGTAGTACTACTC 57.262 43.478 28.56 17.19 37.00 2.59
4673 9043 5.526846 GGTAGAGCGTTCATGTAGTACTACT 59.473 44.000 28.56 14.70 37.00 2.57
4674 9044 5.295292 TGGTAGAGCGTTCATGTAGTACTAC 59.705 44.000 23.58 23.58 36.63 2.73
4675 9045 5.430886 TGGTAGAGCGTTCATGTAGTACTA 58.569 41.667 1.01 0.00 0.00 1.82
4676 9046 4.267536 TGGTAGAGCGTTCATGTAGTACT 58.732 43.478 0.00 0.00 0.00 2.73
4677 9047 4.599047 CTGGTAGAGCGTTCATGTAGTAC 58.401 47.826 1.01 0.00 0.00 2.73
4678 9048 3.066342 GCTGGTAGAGCGTTCATGTAGTA 59.934 47.826 1.01 0.00 38.15 1.82
4679 9049 2.159226 GCTGGTAGAGCGTTCATGTAGT 60.159 50.000 1.01 0.00 38.15 2.73
4680 9050 2.464865 GCTGGTAGAGCGTTCATGTAG 58.535 52.381 1.01 0.00 38.15 2.74
4681 9051 2.579207 GCTGGTAGAGCGTTCATGTA 57.421 50.000 1.01 0.00 38.15 2.29
4682 9052 3.442996 GCTGGTAGAGCGTTCATGT 57.557 52.632 1.01 0.00 38.15 3.21
4694 9064 2.261430 TAGCCCGAGACGAGCTGGTA 62.261 60.000 10.10 0.00 37.45 3.25
4698 9068 2.851071 GCATAGCCCGAGACGAGCT 61.851 63.158 5.48 5.48 40.66 4.09
4704 9074 1.143183 GGAAACGCATAGCCCGAGA 59.857 57.895 0.00 0.00 0.00 4.04
4729 9099 3.112709 GAGCGAGCGGACAACACC 61.113 66.667 0.00 0.00 0.00 4.16
4733 9103 1.664649 CAACAGAGCGAGCGGACAA 60.665 57.895 0.00 0.00 0.00 3.18
4761 9131 2.892640 CCAAGGAGTGGCGATCGA 59.107 61.111 21.57 0.00 41.72 3.59
4788 9158 0.391661 CTTCGACCCACATGGACAGG 60.392 60.000 0.00 0.00 37.39 4.00
4789 9159 1.021390 GCTTCGACCCACATGGACAG 61.021 60.000 0.00 0.00 37.39 3.51
4829 9201 4.084888 GTCCCGTGCCTTTTCGCG 62.085 66.667 0.00 0.00 39.43 5.87
4830 9202 2.975799 TGTCCCGTGCCTTTTCGC 60.976 61.111 0.00 0.00 0.00 4.70
4831 9203 2.943653 GTGTCCCGTGCCTTTTCG 59.056 61.111 0.00 0.00 0.00 3.46
4832 9204 2.943653 CGTGTCCCGTGCCTTTTC 59.056 61.111 0.00 0.00 0.00 2.29
4833 9205 3.284449 GCGTGTCCCGTGCCTTTT 61.284 61.111 0.00 0.00 39.32 2.27
4834 9206 4.555709 TGCGTGTCCCGTGCCTTT 62.556 61.111 0.00 0.00 39.32 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.