Multiple sequence alignment - TraesCS1D01G351300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G351300 chr1D 100.000 2554 0 0 1 2554 436616503 436613950 0.000000e+00 4717.0
1 TraesCS1D01G351300 chr1D 84.407 295 31 8 902 1194 436377321 436377040 2.500000e-70 276.0
2 TraesCS1D01G351300 chr1D 80.135 297 28 13 1350 1638 436335560 436335287 2.590000e-45 193.0
3 TraesCS1D01G351300 chr1B 90.254 1262 67 18 669 1882 591427579 591426326 0.000000e+00 1598.0
4 TraesCS1D01G351300 chr1B 90.445 764 55 9 804 1552 593683508 593684268 0.000000e+00 990.0
5 TraesCS1D01G351300 chr1B 87.680 763 63 13 779 1527 593721487 593722232 0.000000e+00 859.0
6 TraesCS1D01G351300 chr1B 94.979 478 15 2 54 531 591428044 591427576 0.000000e+00 741.0
7 TraesCS1D01G351300 chr1B 86.192 688 34 25 1889 2554 591426161 591425513 0.000000e+00 688.0
8 TraesCS1D01G351300 chr1B 83.077 455 40 13 2128 2552 593734483 593734930 1.850000e-101 379.0
9 TraesCS1D01G351300 chr1B 82.379 454 46 17 2128 2554 593688175 593688621 5.190000e-97 364.0
10 TraesCS1D01G351300 chr1B 92.683 205 14 1 988 1192 591359707 591359504 6.910000e-76 294.0
11 TraesCS1D01G351300 chr1B 77.551 490 63 26 2083 2554 591357574 591357114 4.220000e-63 252.0
12 TraesCS1D01G351300 chr1B 87.931 116 13 1 1178 1293 591358009 591357895 4.430000e-28 135.0
13 TraesCS1D01G351300 chr1B 91.860 86 7 0 1889 1974 593684758 593684843 1.240000e-23 121.0
14 TraesCS1D01G351300 chr1A 91.291 643 33 5 669 1291 533695997 533695358 0.000000e+00 856.0
15 TraesCS1D01G351300 chr1A 94.142 478 27 1 54 531 533696470 533695994 0.000000e+00 726.0
16 TraesCS1D01G351300 chr1A 85.893 638 41 21 1284 1881 533695202 533694574 3.580000e-178 634.0
17 TraesCS1D01G351300 chr1A 86.452 465 20 19 2133 2554 533693977 533693513 1.070000e-128 470.0
18 TraesCS1D01G351300 chr1A 81.637 452 51 14 2128 2552 534819284 534819730 1.880000e-91 346.0
19 TraesCS1D01G351300 chr1A 81.057 227 33 7 1750 1975 533671901 533671684 3.380000e-39 172.0
20 TraesCS1D01G351300 chr4A 90.580 414 27 6 80 493 653640739 653640338 2.890000e-149 538.0
21 TraesCS1D01G351300 chr4A 93.077 260 17 1 234 493 653698255 653698513 1.850000e-101 379.0
22 TraesCS1D01G351300 chr4A 92.754 138 10 0 530 667 737193369 737193232 1.550000e-47 200.0
23 TraesCS1D01G351300 chrUn 93.385 257 16 1 237 493 331933763 331933508 1.850000e-101 379.0
24 TraesCS1D01G351300 chrUn 92.308 143 11 0 527 669 131950949 131951091 1.200000e-48 204.0
25 TraesCS1D01G351300 chrUn 100.000 29 0 0 644 672 221197642 221197614 1.000000e-03 54.7
26 TraesCS1D01G351300 chrUn 100.000 29 0 0 644 672 232072040 232072068 1.000000e-03 54.7
27 TraesCS1D01G351300 chr2D 99.286 140 1 0 530 669 482800726 482800587 1.170000e-63 254.0
28 TraesCS1D01G351300 chr6D 97.203 143 4 0 530 672 44255013 44254871 2.540000e-60 243.0
29 TraesCS1D01G351300 chr7D 92.466 146 11 0 527 672 200767328 200767183 2.570000e-50 209.0
30 TraesCS1D01G351300 chr6A 94.595 111 5 1 527 636 585418721 585418831 1.220000e-38 171.0
31 TraesCS1D01G351300 chr6A 86.429 140 10 4 530 669 11883490 11883360 7.360000e-31 145.0
32 TraesCS1D01G351300 chr3D 86.806 144 19 0 528 671 4498236 4498379 7.310000e-36 161.0
33 TraesCS1D01G351300 chr4B 82.192 146 24 2 528 672 609428469 609428325 9.590000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G351300 chr1D 436613950 436616503 2553 True 4717.000000 4717 100.0000 1 2554 1 chr1D.!!$R3 2553
1 TraesCS1D01G351300 chr1B 591425513 591428044 2531 True 1009.000000 1598 90.4750 54 2554 3 chr1B.!!$R2 2500
2 TraesCS1D01G351300 chr1B 593721487 593722232 745 False 859.000000 859 87.6800 779 1527 1 chr1B.!!$F1 748
3 TraesCS1D01G351300 chr1B 593683508 593688621 5113 False 491.666667 990 88.2280 804 2554 3 chr1B.!!$F3 1750
4 TraesCS1D01G351300 chr1B 591357114 591359707 2593 True 227.000000 294 86.0550 988 2554 3 chr1B.!!$R1 1566
5 TraesCS1D01G351300 chr1A 533693513 533696470 2957 True 671.500000 856 89.4445 54 2554 4 chr1A.!!$R2 2500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 629 0.378962 CTAGAACTCCGTCAGCTCCG 59.621 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2065 7757 0.107945 GTGAAGATCGCTCCAAGCCT 60.108 55.0 0.0 0.0 38.18 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.286800 TCGTTGATTGTATGTTCTAAAAACAGG 58.713 33.333 0.00 0.00 33.18 4.00
27 28 7.537306 CGTTGATTGTATGTTCTAAAAACAGGG 59.463 37.037 0.00 0.00 33.18 4.45
28 29 6.919721 TGATTGTATGTTCTAAAAACAGGGC 58.080 36.000 0.00 0.00 33.18 5.19
29 30 6.491745 TGATTGTATGTTCTAAAAACAGGGCA 59.508 34.615 0.00 0.00 33.18 5.36
30 31 5.699097 TGTATGTTCTAAAAACAGGGCAC 57.301 39.130 0.00 0.00 33.18 5.01
31 32 5.133941 TGTATGTTCTAAAAACAGGGCACA 58.866 37.500 0.00 0.00 33.18 4.57
32 33 4.584327 ATGTTCTAAAAACAGGGCACAC 57.416 40.909 0.00 0.00 33.18 3.82
33 34 3.626930 TGTTCTAAAAACAGGGCACACT 58.373 40.909 0.00 0.00 0.00 3.55
34 35 4.020543 TGTTCTAAAAACAGGGCACACTT 58.979 39.130 0.00 0.00 0.00 3.16
35 36 4.464597 TGTTCTAAAAACAGGGCACACTTT 59.535 37.500 0.00 0.00 0.00 2.66
36 37 5.046950 TGTTCTAAAAACAGGGCACACTTTT 60.047 36.000 0.00 0.00 0.00 2.27
37 38 5.669164 TCTAAAAACAGGGCACACTTTTT 57.331 34.783 10.25 10.25 32.15 1.94
38 39 5.415221 TCTAAAAACAGGGCACACTTTTTG 58.585 37.500 13.76 6.12 30.45 2.44
39 40 3.694043 AAAACAGGGCACACTTTTTGT 57.306 38.095 0.00 0.00 39.97 2.83
40 41 3.694043 AAACAGGGCACACTTTTTGTT 57.306 38.095 0.00 0.00 35.67 2.83
41 42 2.671130 ACAGGGCACACTTTTTGTTG 57.329 45.000 0.00 0.00 35.67 3.33
42 43 2.175202 ACAGGGCACACTTTTTGTTGA 58.825 42.857 0.00 0.00 35.67 3.18
43 44 2.094234 ACAGGGCACACTTTTTGTTGAC 60.094 45.455 0.00 0.00 35.67 3.18
44 45 1.480545 AGGGCACACTTTTTGTTGACC 59.519 47.619 0.00 0.00 35.67 4.02
45 46 1.472552 GGGCACACTTTTTGTTGACCC 60.473 52.381 0.00 0.00 35.67 4.46
46 47 1.205893 GGCACACTTTTTGTTGACCCA 59.794 47.619 0.00 0.00 35.67 4.51
47 48 2.354203 GGCACACTTTTTGTTGACCCAA 60.354 45.455 0.00 0.00 35.67 4.12
48 49 3.330267 GCACACTTTTTGTTGACCCAAA 58.670 40.909 0.00 0.00 35.67 3.28
49 50 3.748568 GCACACTTTTTGTTGACCCAAAA 59.251 39.130 0.00 0.00 41.28 2.44
50 51 4.214332 GCACACTTTTTGTTGACCCAAAAA 59.786 37.500 10.36 10.36 46.50 1.94
51 52 5.684850 CACACTTTTTGTTGACCCAAAAAC 58.315 37.500 7.51 0.00 44.85 2.43
52 53 5.237344 CACACTTTTTGTTGACCCAAAAACA 59.763 36.000 7.51 0.00 44.85 2.83
106 107 8.538701 ACATATCATAGATGAGAGTGGGAAATC 58.461 37.037 0.00 0.00 40.64 2.17
246 247 6.403333 TGATAAGCAAGTTTAGTAAGCACG 57.597 37.500 0.00 0.00 0.00 5.34
249 250 2.480419 AGCAAGTTTAGTAAGCACGCAG 59.520 45.455 11.22 0.00 0.00 5.18
297 298 7.452880 TTCAAAAATAGGTGGAGTCATTCAG 57.547 36.000 0.00 0.00 0.00 3.02
300 301 7.890127 TCAAAAATAGGTGGAGTCATTCAGAAT 59.110 33.333 0.00 0.00 0.00 2.40
451 452 8.458573 TGTTGTCAAGTACCAATTACATCTTT 57.541 30.769 0.00 0.00 32.41 2.52
452 453 9.562408 TGTTGTCAAGTACCAATTACATCTTTA 57.438 29.630 0.00 0.00 32.41 1.85
534 535 9.166126 GAAATTACACAATATAAGTTAAGGCGC 57.834 33.333 0.00 0.00 0.00 6.53
535 536 8.446599 AATTACACAATATAAGTTAAGGCGCT 57.553 30.769 7.64 0.00 0.00 5.92
536 537 5.734855 ACACAATATAAGTTAAGGCGCTG 57.265 39.130 7.64 0.00 0.00 5.18
537 538 5.183228 ACACAATATAAGTTAAGGCGCTGT 58.817 37.500 7.64 0.00 0.00 4.40
538 539 5.646360 ACACAATATAAGTTAAGGCGCTGTT 59.354 36.000 7.64 3.81 0.00 3.16
539 540 6.183360 ACACAATATAAGTTAAGGCGCTGTTC 60.183 38.462 7.64 0.00 0.00 3.18
540 541 5.006358 ACAATATAAGTTAAGGCGCTGTTCG 59.994 40.000 7.64 0.00 42.12 3.95
541 542 1.717194 TAAGTTAAGGCGCTGTTCGG 58.283 50.000 7.64 0.00 38.94 4.30
561 562 4.440127 GTCCGCCCGCTCCGTAAA 62.440 66.667 0.00 0.00 0.00 2.01
562 563 3.693471 TCCGCCCGCTCCGTAAAA 61.693 61.111 0.00 0.00 0.00 1.52
563 564 2.743149 CCGCCCGCTCCGTAAAAA 60.743 61.111 0.00 0.00 0.00 1.94
564 565 2.110352 CCGCCCGCTCCGTAAAAAT 61.110 57.895 0.00 0.00 0.00 1.82
565 566 1.650314 CCGCCCGCTCCGTAAAAATT 61.650 55.000 0.00 0.00 0.00 1.82
566 567 0.522495 CGCCCGCTCCGTAAAAATTG 60.522 55.000 0.00 0.00 0.00 2.32
567 568 0.806241 GCCCGCTCCGTAAAAATTGA 59.194 50.000 0.00 0.00 0.00 2.57
568 569 1.202143 GCCCGCTCCGTAAAAATTGAG 60.202 52.381 0.00 0.00 0.00 3.02
569 570 2.352388 CCCGCTCCGTAAAAATTGAGA 58.648 47.619 0.00 0.00 0.00 3.27
570 571 2.745281 CCCGCTCCGTAAAAATTGAGAA 59.255 45.455 0.00 0.00 0.00 2.87
571 572 3.377172 CCCGCTCCGTAAAAATTGAGAAT 59.623 43.478 0.00 0.00 0.00 2.40
572 573 4.495844 CCCGCTCCGTAAAAATTGAGAATC 60.496 45.833 0.00 0.00 0.00 2.52
573 574 4.332819 CCGCTCCGTAAAAATTGAGAATCT 59.667 41.667 0.00 0.00 34.92 2.40
574 575 5.493735 CGCTCCGTAAAAATTGAGAATCTC 58.506 41.667 2.75 2.75 34.92 2.75
575 576 5.493735 GCTCCGTAAAAATTGAGAATCTCG 58.506 41.667 5.73 0.00 34.92 4.04
576 577 5.502544 GCTCCGTAAAAATTGAGAATCTCGG 60.503 44.000 5.73 0.48 34.92 4.63
577 578 4.873827 TCCGTAAAAATTGAGAATCTCGGG 59.126 41.667 5.73 0.00 35.78 5.14
578 579 4.873827 CCGTAAAAATTGAGAATCTCGGGA 59.126 41.667 5.73 0.00 34.92 5.14
579 580 5.006746 CCGTAAAAATTGAGAATCTCGGGAG 59.993 44.000 5.73 0.00 34.92 4.30
580 581 5.581085 CGTAAAAATTGAGAATCTCGGGAGT 59.419 40.000 5.73 0.00 34.92 3.85
581 582 6.755141 CGTAAAAATTGAGAATCTCGGGAGTA 59.245 38.462 5.73 0.00 34.92 2.59
582 583 6.986904 AAAAATTGAGAATCTCGGGAGTAC 57.013 37.500 5.73 0.00 34.92 2.73
583 584 4.674281 AATTGAGAATCTCGGGAGTACC 57.326 45.455 5.73 0.00 34.92 3.34
592 593 4.180496 GGGAGTACCGTTTCGCTG 57.820 61.111 0.00 0.00 36.97 5.18
593 594 1.447314 GGGAGTACCGTTTCGCTGG 60.447 63.158 0.00 0.00 36.97 4.85
594 595 2.098831 GGAGTACCGTTTCGCTGGC 61.099 63.158 0.00 0.00 0.00 4.85
595 596 1.080025 GAGTACCGTTTCGCTGGCT 60.080 57.895 0.00 0.00 0.00 4.75
596 597 1.077089 GAGTACCGTTTCGCTGGCTC 61.077 60.000 0.00 0.00 0.00 4.70
597 598 1.080025 GTACCGTTTCGCTGGCTCT 60.080 57.895 0.00 0.00 0.00 4.09
598 599 1.080093 TACCGTTTCGCTGGCTCTG 60.080 57.895 0.00 0.00 0.00 3.35
599 600 3.793144 CCGTTTCGCTGGCTCTGC 61.793 66.667 0.00 0.00 0.00 4.26
600 601 3.043713 CGTTTCGCTGGCTCTGCA 61.044 61.111 0.00 0.00 0.00 4.41
601 602 2.558313 GTTTCGCTGGCTCTGCAC 59.442 61.111 0.00 0.00 0.00 4.57
602 603 1.963338 GTTTCGCTGGCTCTGCACT 60.963 57.895 0.00 0.00 0.00 4.40
603 604 1.227943 TTTCGCTGGCTCTGCACTT 60.228 52.632 0.00 0.00 0.00 3.16
604 605 0.819259 TTTCGCTGGCTCTGCACTTT 60.819 50.000 0.00 0.00 0.00 2.66
605 606 0.819259 TTCGCTGGCTCTGCACTTTT 60.819 50.000 0.00 0.00 0.00 2.27
606 607 0.819259 TCGCTGGCTCTGCACTTTTT 60.819 50.000 0.00 0.00 0.00 1.94
607 608 0.874390 CGCTGGCTCTGCACTTTTTA 59.126 50.000 0.00 0.00 0.00 1.52
608 609 1.266718 CGCTGGCTCTGCACTTTTTAA 59.733 47.619 0.00 0.00 0.00 1.52
609 610 2.666026 GCTGGCTCTGCACTTTTTAAC 58.334 47.619 0.00 0.00 0.00 2.01
610 611 2.294512 GCTGGCTCTGCACTTTTTAACT 59.705 45.455 0.00 0.00 0.00 2.24
611 612 3.502211 GCTGGCTCTGCACTTTTTAACTA 59.498 43.478 0.00 0.00 0.00 2.24
612 613 4.378874 GCTGGCTCTGCACTTTTTAACTAG 60.379 45.833 0.00 0.00 0.00 2.57
613 614 4.968259 TGGCTCTGCACTTTTTAACTAGA 58.032 39.130 0.00 0.00 0.00 2.43
614 615 5.373222 TGGCTCTGCACTTTTTAACTAGAA 58.627 37.500 0.00 0.00 0.00 2.10
615 616 5.238650 TGGCTCTGCACTTTTTAACTAGAAC 59.761 40.000 0.00 0.00 0.00 3.01
616 617 5.470437 GGCTCTGCACTTTTTAACTAGAACT 59.530 40.000 0.00 0.00 0.00 3.01
617 618 6.347806 GGCTCTGCACTTTTTAACTAGAACTC 60.348 42.308 0.00 0.00 0.00 3.01
618 619 6.347806 GCTCTGCACTTTTTAACTAGAACTCC 60.348 42.308 0.00 0.00 0.00 3.85
619 620 5.694910 TCTGCACTTTTTAACTAGAACTCCG 59.305 40.000 0.00 0.00 0.00 4.63
620 621 5.362263 TGCACTTTTTAACTAGAACTCCGT 58.638 37.500 0.00 0.00 0.00 4.69
621 622 5.464389 TGCACTTTTTAACTAGAACTCCGTC 59.536 40.000 0.00 0.00 0.00 4.79
622 623 5.464389 GCACTTTTTAACTAGAACTCCGTCA 59.536 40.000 0.00 0.00 0.00 4.35
623 624 6.346678 GCACTTTTTAACTAGAACTCCGTCAG 60.347 42.308 0.00 0.00 0.00 3.51
624 625 5.695363 ACTTTTTAACTAGAACTCCGTCAGC 59.305 40.000 0.00 0.00 0.00 4.26
625 626 5.464030 TTTTAACTAGAACTCCGTCAGCT 57.536 39.130 0.00 0.00 0.00 4.24
626 627 4.698583 TTAACTAGAACTCCGTCAGCTC 57.301 45.455 0.00 0.00 0.00 4.09
627 628 1.465794 ACTAGAACTCCGTCAGCTCC 58.534 55.000 0.00 0.00 0.00 4.70
628 629 0.378962 CTAGAACTCCGTCAGCTCCG 59.621 60.000 0.00 0.00 0.00 4.63
629 630 1.030488 TAGAACTCCGTCAGCTCCGG 61.030 60.000 13.93 13.93 46.83 5.14
630 631 3.358076 GAACTCCGTCAGCTCCGGG 62.358 68.421 18.59 12.69 45.51 5.73
631 632 3.881019 AACTCCGTCAGCTCCGGGA 62.881 63.158 18.59 8.43 45.51 5.14
632 633 3.522731 CTCCGTCAGCTCCGGGAG 61.523 72.222 19.95 19.95 45.51 4.30
664 665 3.787001 GGAGGGGCTCCGAACAGG 61.787 72.222 0.00 0.00 41.08 4.00
665 666 4.475135 GAGGGGCTCCGAACAGGC 62.475 72.222 0.00 0.00 40.77 4.85
679 680 2.789409 ACAGGCCCTAAGATTCACAC 57.211 50.000 0.00 0.00 0.00 3.82
684 685 4.019174 AGGCCCTAAGATTCACACAATTG 58.981 43.478 3.24 3.24 0.00 2.32
728 734 6.659242 TCAGAAAATAAACTAAGGGGCAGAAG 59.341 38.462 0.00 0.00 0.00 2.85
730 736 7.340487 CAGAAAATAAACTAAGGGGCAGAAGAT 59.660 37.037 0.00 0.00 0.00 2.40
746 752 5.652994 AGAAGATCTGACACTTACAGTCC 57.347 43.478 0.00 0.00 36.81 3.85
815 821 2.093394 GGTTCCTGAAGAAGTCTAGGCC 60.093 54.545 0.00 0.00 34.29 5.19
890 899 6.833933 GGGGAATAAATGTCTGAAGTATTGGT 59.166 38.462 0.00 0.00 0.00 3.67
1017 1041 5.256474 TCAAAGATGAACAAGGGGAAGATC 58.744 41.667 0.00 0.00 30.99 2.75
1478 3187 2.943199 GCCATACAGCTTCAAGGCTCTT 60.943 50.000 9.19 0.00 41.00 2.85
1552 3261 7.296628 AGGAAGGACTAGCAAGTATTCTATG 57.703 40.000 0.00 0.00 35.56 2.23
1566 3275 8.331022 CAAGTATTCTATGAACAATTCAGTCCG 58.669 37.037 0.00 0.00 43.98 4.79
1568 3277 3.531538 TCTATGAACAATTCAGTCCGCC 58.468 45.455 0.00 0.00 43.98 6.13
1569 3278 1.086696 ATGAACAATTCAGTCCGCCG 58.913 50.000 0.00 0.00 43.98 6.46
1570 3279 0.953471 TGAACAATTCAGTCCGCCGG 60.953 55.000 0.00 0.00 34.08 6.13
1571 3280 0.953960 GAACAATTCAGTCCGCCGGT 60.954 55.000 1.63 0.00 0.00 5.28
1572 3281 0.536460 AACAATTCAGTCCGCCGGTT 60.536 50.000 1.63 0.00 0.00 4.44
1573 3282 1.234615 ACAATTCAGTCCGCCGGTTG 61.235 55.000 1.63 1.19 0.00 3.77
1628 3690 4.851540 TGATGGGGGTATGTATCACATCAT 59.148 41.667 3.68 0.00 39.88 2.45
1679 3768 4.142160 GGCCTGTTGAACACTTCTTTCTTT 60.142 41.667 0.00 0.00 0.00 2.52
1680 3769 4.800471 GCCTGTTGAACACTTCTTTCTTTG 59.200 41.667 0.00 0.00 0.00 2.77
1725 3814 6.703607 CGTCAATAAATCCAGTAGAGCAGAAT 59.296 38.462 0.00 0.00 0.00 2.40
1727 3816 7.497249 GTCAATAAATCCAGTAGAGCAGAATGT 59.503 37.037 0.00 0.00 39.31 2.71
1745 3837 9.862585 GCAGAATGTTTTTAAACCATGTAAAAG 57.137 29.630 3.13 0.00 39.31 2.27
1756 3849 7.693969 AAACCATGTAAAAGAAGAGATCTGG 57.306 36.000 0.00 0.00 38.79 3.86
1758 3851 6.410540 ACCATGTAAAAGAAGAGATCTGGTC 58.589 40.000 0.00 0.00 38.79 4.02
1759 3852 6.214412 ACCATGTAAAAGAAGAGATCTGGTCT 59.786 38.462 0.00 0.00 38.79 3.85
1781 3874 6.371548 GTCTTTTTGGGCAGAAAGTTTTTCTT 59.628 34.615 1.48 0.00 35.01 2.52
1787 3880 4.635765 GGGCAGAAAGTTTTTCTTGCTTTT 59.364 37.500 17.24 0.00 39.87 2.27
1809 3907 8.777865 TTTTATCTGAAGTCATGTAGTCCTTG 57.222 34.615 0.00 0.00 0.00 3.61
1816 3914 6.014242 TGAAGTCATGTAGTCCTTGTGAAGAT 60.014 38.462 0.00 0.00 0.00 2.40
1823 3921 4.148128 AGTCCTTGTGAAGATATGCTGG 57.852 45.455 0.00 0.00 0.00 4.85
1831 3929 3.008375 GTGAAGATATGCTGGATAGGCCA 59.992 47.826 5.01 0.00 46.96 5.36
1863 3969 4.141181 TGTTATGGCCATCCTTGAATAGCT 60.141 41.667 24.80 0.00 0.00 3.32
1869 3975 3.406764 CCATCCTTGAATAGCTACTGCC 58.593 50.000 0.00 0.00 40.80 4.85
1883 3989 4.637534 AGCTACTGCCTGTTGATTTGTATG 59.362 41.667 0.00 0.00 40.80 2.39
1885 3991 2.162208 ACTGCCTGTTGATTTGTATGCG 59.838 45.455 0.00 0.00 0.00 4.73
1887 3993 1.135431 GCCTGTTGATTTGTATGCGCA 60.135 47.619 14.96 14.96 0.00 6.09
1944 4380 1.926426 ATGCCTGCCTCTGTAACCCC 61.926 60.000 0.00 0.00 0.00 4.95
1945 4381 2.602676 GCCTGCCTCTGTAACCCCA 61.603 63.158 0.00 0.00 0.00 4.96
1952 4388 1.906574 CCTCTGTAACCCCACTGCTTA 59.093 52.381 0.00 0.00 0.00 3.09
1954 4390 1.906574 TCTGTAACCCCACTGCTTAGG 59.093 52.381 0.00 0.00 0.00 2.69
1986 4422 2.045524 CTCCTGATGGGTGCTGTATCT 58.954 52.381 0.00 0.00 36.25 1.98
1987 4423 2.036992 CTCCTGATGGGTGCTGTATCTC 59.963 54.545 0.00 0.00 36.25 2.75
1989 4425 1.071385 CTGATGGGTGCTGTATCTCCC 59.929 57.143 0.00 0.00 39.58 4.30
2050 7742 8.743085 AGTTCAAACTGCTGTTATCATGATAT 57.257 30.769 16.06 0.00 37.98 1.63
2051 7743 8.618677 AGTTCAAACTGCTGTTATCATGATATG 58.381 33.333 16.06 8.26 37.98 1.78
2052 7744 8.400947 GTTCAAACTGCTGTTATCATGATATGT 58.599 33.333 16.06 6.30 34.96 2.29
2053 7745 9.612066 TTCAAACTGCTGTTATCATGATATGTA 57.388 29.630 16.06 8.40 34.96 2.29
2054 7746 9.264719 TCAAACTGCTGTTATCATGATATGTAG 57.735 33.333 16.06 17.44 34.96 2.74
2055 7747 9.264719 CAAACTGCTGTTATCATGATATGTAGA 57.735 33.333 22.69 7.59 34.96 2.59
2056 7748 9.486497 AAACTGCTGTTATCATGATATGTAGAG 57.514 33.333 22.69 15.55 34.96 2.43
2057 7749 8.414629 ACTGCTGTTATCATGATATGTAGAGA 57.585 34.615 22.69 7.90 0.00 3.10
2058 7750 8.864087 ACTGCTGTTATCATGATATGTAGAGAA 58.136 33.333 22.69 10.96 0.00 2.87
2059 7751 9.702494 CTGCTGTTATCATGATATGTAGAGAAA 57.298 33.333 16.06 0.00 0.00 2.52
2063 7755 9.440773 TGTTATCATGATATGTAGAGAAATGGC 57.559 33.333 16.06 0.00 0.00 4.40
2064 7756 9.440773 GTTATCATGATATGTAGAGAAATGGCA 57.559 33.333 16.06 0.00 0.00 4.92
2070 7762 3.439857 TGTAGAGAAATGGCAAGGCTT 57.560 42.857 0.00 0.00 0.00 4.35
2095 7787 1.740380 CGATCTTCACCAGGCATCGTT 60.740 52.381 0.00 0.00 33.29 3.85
2096 7788 2.359900 GATCTTCACCAGGCATCGTTT 58.640 47.619 0.00 0.00 0.00 3.60
2097 7789 1.522668 TCTTCACCAGGCATCGTTTG 58.477 50.000 0.00 0.00 0.00 2.93
2113 7809 3.871006 TCGTTTGCTAGTATGGCTGATTG 59.129 43.478 0.00 0.00 46.01 2.67
2131 7827 6.856426 GCTGATTGGACAACAAGTTAGTAAAC 59.144 38.462 0.00 0.00 43.48 2.01
2150 8015 7.970102 AGTAAACACTACCAAAAGATACTGGA 58.030 34.615 0.00 0.00 36.49 3.86
2250 8123 1.202604 ACTCACACTTAACCCACACGG 60.203 52.381 0.00 0.00 37.81 4.94
2329 8232 3.443329 ACAACAAACTTCAGCACACATCA 59.557 39.130 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.286800 CCTGTTTTTAGAACATACAATCAACGA 58.713 33.333 0.00 0.00 0.00 3.85
1 2 7.537306 CCCTGTTTTTAGAACATACAATCAACG 59.463 37.037 0.00 0.00 0.00 4.10
2 3 7.328493 GCCCTGTTTTTAGAACATACAATCAAC 59.672 37.037 0.00 0.00 0.00 3.18
3 4 7.014711 TGCCCTGTTTTTAGAACATACAATCAA 59.985 33.333 0.00 0.00 0.00 2.57
4 5 6.491745 TGCCCTGTTTTTAGAACATACAATCA 59.508 34.615 0.00 0.00 0.00 2.57
5 6 6.806739 GTGCCCTGTTTTTAGAACATACAATC 59.193 38.462 0.00 0.00 0.00 2.67
6 7 6.266558 TGTGCCCTGTTTTTAGAACATACAAT 59.733 34.615 0.00 0.00 0.00 2.71
7 8 5.594725 TGTGCCCTGTTTTTAGAACATACAA 59.405 36.000 0.00 0.00 0.00 2.41
8 9 5.009210 GTGTGCCCTGTTTTTAGAACATACA 59.991 40.000 0.00 0.00 0.00 2.29
9 10 5.240844 AGTGTGCCCTGTTTTTAGAACATAC 59.759 40.000 0.00 0.00 0.00 2.39
10 11 5.381757 AGTGTGCCCTGTTTTTAGAACATA 58.618 37.500 0.00 0.00 0.00 2.29
11 12 4.215109 AGTGTGCCCTGTTTTTAGAACAT 58.785 39.130 0.00 0.00 0.00 2.71
12 13 3.626930 AGTGTGCCCTGTTTTTAGAACA 58.373 40.909 0.00 0.00 0.00 3.18
13 14 4.649088 AAGTGTGCCCTGTTTTTAGAAC 57.351 40.909 0.00 0.00 0.00 3.01
14 15 5.669164 AAAAGTGTGCCCTGTTTTTAGAA 57.331 34.783 0.00 0.00 0.00 2.10
15 16 5.046950 ACAAAAAGTGTGCCCTGTTTTTAGA 60.047 36.000 0.00 0.00 39.72 2.10
16 17 5.175127 ACAAAAAGTGTGCCCTGTTTTTAG 58.825 37.500 0.00 0.00 39.72 1.85
17 18 5.153950 ACAAAAAGTGTGCCCTGTTTTTA 57.846 34.783 0.00 0.00 39.72 1.52
18 19 4.014569 ACAAAAAGTGTGCCCTGTTTTT 57.985 36.364 0.00 0.00 39.72 1.94
19 20 3.694043 ACAAAAAGTGTGCCCTGTTTT 57.306 38.095 0.00 0.00 39.72 2.43
20 21 3.007398 TCAACAAAAAGTGTGCCCTGTTT 59.993 39.130 0.00 0.00 40.60 2.83
21 22 2.564947 TCAACAAAAAGTGTGCCCTGTT 59.435 40.909 0.00 0.00 40.60 3.16
22 23 2.094234 GTCAACAAAAAGTGTGCCCTGT 60.094 45.455 0.00 0.00 40.60 4.00
23 24 2.539476 GTCAACAAAAAGTGTGCCCTG 58.461 47.619 0.00 0.00 40.60 4.45
24 25 1.480545 GGTCAACAAAAAGTGTGCCCT 59.519 47.619 0.00 0.00 40.60 5.19
25 26 1.472552 GGGTCAACAAAAAGTGTGCCC 60.473 52.381 0.00 0.00 40.60 5.36
26 27 1.205893 TGGGTCAACAAAAAGTGTGCC 59.794 47.619 0.00 0.00 40.60 5.01
27 28 2.663826 TGGGTCAACAAAAAGTGTGC 57.336 45.000 0.00 0.00 40.60 4.57
34 35 7.338710 TGGATATTGTTTTTGGGTCAACAAAA 58.661 30.769 1.86 0.00 44.08 2.44
35 36 6.889198 TGGATATTGTTTTTGGGTCAACAAA 58.111 32.000 1.86 0.00 44.08 2.83
36 37 6.098982 ACTGGATATTGTTTTTGGGTCAACAA 59.901 34.615 0.27 0.27 44.78 2.83
37 38 5.600484 ACTGGATATTGTTTTTGGGTCAACA 59.400 36.000 0.00 0.00 0.00 3.33
38 39 6.096673 ACTGGATATTGTTTTTGGGTCAAC 57.903 37.500 0.00 0.00 0.00 3.18
39 40 6.739331 AACTGGATATTGTTTTTGGGTCAA 57.261 33.333 0.00 0.00 0.00 3.18
40 41 6.739331 AAACTGGATATTGTTTTTGGGTCA 57.261 33.333 0.00 0.00 33.21 4.02
41 42 8.984764 GTTAAAACTGGATATTGTTTTTGGGTC 58.015 33.333 15.31 4.86 41.72 4.46
42 43 8.487028 TGTTAAAACTGGATATTGTTTTTGGGT 58.513 29.630 15.31 1.24 41.72 4.51
43 44 8.894768 TGTTAAAACTGGATATTGTTTTTGGG 57.105 30.769 15.31 0.00 41.72 4.12
97 98 1.729284 TACTTTCGCCGATTTCCCAC 58.271 50.000 0.00 0.00 0.00 4.61
106 107 2.095372 GGATCCAAAGTTACTTTCGCCG 59.905 50.000 6.95 0.00 30.60 6.46
240 241 4.507710 TCATAATTTCTCTCTGCGTGCTT 58.492 39.130 0.00 0.00 0.00 3.91
246 247 6.292061 CGCTTACACTCATAATTTCTCTCTGC 60.292 42.308 0.00 0.00 0.00 4.26
249 250 7.938563 ATCGCTTACACTCATAATTTCTCTC 57.061 36.000 0.00 0.00 0.00 3.20
297 298 2.460330 CTGTGCCGACAGTCCATTC 58.540 57.895 0.00 0.00 44.15 2.67
527 528 2.434185 CTGCCGAACAGCGCCTTA 60.434 61.111 2.29 0.00 40.19 2.69
544 545 3.938019 TTTTACGGAGCGGGCGGAC 62.938 63.158 0.00 0.00 0.00 4.79
545 546 2.524951 ATTTTTACGGAGCGGGCGGA 62.525 55.000 0.00 0.00 0.00 5.54
546 547 1.650314 AATTTTTACGGAGCGGGCGG 61.650 55.000 0.00 0.00 0.00 6.13
547 548 0.522495 CAATTTTTACGGAGCGGGCG 60.522 55.000 0.00 0.00 0.00 6.13
548 549 0.806241 TCAATTTTTACGGAGCGGGC 59.194 50.000 0.00 0.00 0.00 6.13
549 550 2.352388 TCTCAATTTTTACGGAGCGGG 58.648 47.619 0.00 0.00 0.00 6.13
550 551 4.332819 AGATTCTCAATTTTTACGGAGCGG 59.667 41.667 0.00 0.00 0.00 5.52
551 552 5.470845 AGATTCTCAATTTTTACGGAGCG 57.529 39.130 0.00 0.00 0.00 5.03
552 553 5.493735 CGAGATTCTCAATTTTTACGGAGC 58.506 41.667 13.88 0.00 0.00 4.70
553 554 5.006746 CCCGAGATTCTCAATTTTTACGGAG 59.993 44.000 13.88 0.00 39.11 4.63
554 555 4.873827 CCCGAGATTCTCAATTTTTACGGA 59.126 41.667 13.88 0.00 39.11 4.69
555 556 4.873827 TCCCGAGATTCTCAATTTTTACGG 59.126 41.667 13.88 6.15 37.02 4.02
556 557 5.581085 ACTCCCGAGATTCTCAATTTTTACG 59.419 40.000 13.88 0.00 0.00 3.18
557 558 6.986904 ACTCCCGAGATTCTCAATTTTTAC 57.013 37.500 13.88 0.00 0.00 2.01
558 559 7.046033 GGTACTCCCGAGATTCTCAATTTTTA 58.954 38.462 13.88 0.00 0.00 1.52
559 560 5.880887 GGTACTCCCGAGATTCTCAATTTTT 59.119 40.000 13.88 0.00 0.00 1.94
560 561 5.429130 GGTACTCCCGAGATTCTCAATTTT 58.571 41.667 13.88 0.00 0.00 1.82
561 562 5.024785 GGTACTCCCGAGATTCTCAATTT 57.975 43.478 13.88 0.00 0.00 1.82
562 563 4.674281 GGTACTCCCGAGATTCTCAATT 57.326 45.455 13.88 0.00 0.00 2.32
575 576 1.447314 CCAGCGAAACGGTACTCCC 60.447 63.158 0.00 0.00 35.27 4.30
576 577 2.098831 GCCAGCGAAACGGTACTCC 61.099 63.158 0.00 0.00 35.27 3.85
577 578 1.077089 GAGCCAGCGAAACGGTACTC 61.077 60.000 0.00 0.00 35.27 2.59
578 579 1.080025 GAGCCAGCGAAACGGTACT 60.080 57.895 0.00 0.00 35.27 2.73
579 580 1.080025 AGAGCCAGCGAAACGGTAC 60.080 57.895 0.00 0.00 35.27 3.34
580 581 1.080093 CAGAGCCAGCGAAACGGTA 60.080 57.895 0.00 0.00 35.27 4.02
581 582 2.357517 CAGAGCCAGCGAAACGGT 60.358 61.111 0.00 0.00 38.40 4.83
582 583 3.793144 GCAGAGCCAGCGAAACGG 61.793 66.667 0.00 0.00 0.00 4.44
583 584 3.043713 TGCAGAGCCAGCGAAACG 61.044 61.111 0.00 0.00 33.85 3.60
584 585 1.510480 AAGTGCAGAGCCAGCGAAAC 61.510 55.000 0.00 0.00 33.85 2.78
585 586 0.819259 AAAGTGCAGAGCCAGCGAAA 60.819 50.000 0.00 0.00 33.85 3.46
586 587 0.819259 AAAAGTGCAGAGCCAGCGAA 60.819 50.000 0.00 0.00 33.85 4.70
587 588 0.819259 AAAAAGTGCAGAGCCAGCGA 60.819 50.000 0.00 0.00 33.85 4.93
588 589 0.874390 TAAAAAGTGCAGAGCCAGCG 59.126 50.000 0.00 0.00 33.85 5.18
589 590 2.294512 AGTTAAAAAGTGCAGAGCCAGC 59.705 45.455 0.00 0.00 0.00 4.85
590 591 4.997395 TCTAGTTAAAAAGTGCAGAGCCAG 59.003 41.667 0.00 0.00 0.00 4.85
591 592 4.968259 TCTAGTTAAAAAGTGCAGAGCCA 58.032 39.130 0.00 0.00 0.00 4.75
592 593 5.470437 AGTTCTAGTTAAAAAGTGCAGAGCC 59.530 40.000 0.00 0.00 0.00 4.70
593 594 6.347806 GGAGTTCTAGTTAAAAAGTGCAGAGC 60.348 42.308 0.00 0.00 0.00 4.09
594 595 6.128795 CGGAGTTCTAGTTAAAAAGTGCAGAG 60.129 42.308 0.00 0.00 0.00 3.35
595 596 5.694910 CGGAGTTCTAGTTAAAAAGTGCAGA 59.305 40.000 0.00 0.00 0.00 4.26
596 597 5.465724 ACGGAGTTCTAGTTAAAAAGTGCAG 59.534 40.000 0.00 0.00 37.78 4.41
597 598 5.362263 ACGGAGTTCTAGTTAAAAAGTGCA 58.638 37.500 0.00 0.00 37.78 4.57
598 599 5.919272 ACGGAGTTCTAGTTAAAAAGTGC 57.081 39.130 0.00 0.00 37.78 4.40
647 648 3.787001 CCTGTTCGGAGCCCCTCC 61.787 72.222 1.10 1.10 46.44 4.30
648 649 4.475135 GCCTGTTCGGAGCCCCTC 62.475 72.222 0.00 0.00 33.16 4.30
652 653 2.595009 CTTAGGGCCTGTTCGGAGCC 62.595 65.000 18.53 0.00 46.37 4.70
653 654 1.153349 CTTAGGGCCTGTTCGGAGC 60.153 63.158 18.53 0.00 33.16 4.70
654 655 1.123928 ATCTTAGGGCCTGTTCGGAG 58.876 55.000 18.53 4.53 33.16 4.63
655 656 1.485066 GAATCTTAGGGCCTGTTCGGA 59.515 52.381 18.53 7.23 33.16 4.55
656 657 1.209504 TGAATCTTAGGGCCTGTTCGG 59.790 52.381 18.53 1.46 0.00 4.30
657 658 2.280628 GTGAATCTTAGGGCCTGTTCG 58.719 52.381 18.53 1.32 0.00 3.95
658 659 3.010420 GTGTGAATCTTAGGGCCTGTTC 58.990 50.000 18.53 14.85 0.00 3.18
659 660 2.375174 TGTGTGAATCTTAGGGCCTGTT 59.625 45.455 18.53 5.63 0.00 3.16
660 661 1.985159 TGTGTGAATCTTAGGGCCTGT 59.015 47.619 18.53 0.00 0.00 4.00
661 662 2.787473 TGTGTGAATCTTAGGGCCTG 57.213 50.000 18.53 0.00 0.00 4.85
662 663 4.019174 CAATTGTGTGAATCTTAGGGCCT 58.981 43.478 12.58 12.58 0.00 5.19
663 664 3.429410 GCAATTGTGTGAATCTTAGGGCC 60.429 47.826 7.40 0.00 0.00 5.80
664 665 3.193267 TGCAATTGTGTGAATCTTAGGGC 59.807 43.478 7.40 0.00 0.00 5.19
665 666 4.460382 ACTGCAATTGTGTGAATCTTAGGG 59.540 41.667 7.40 0.00 0.00 3.53
666 667 5.392380 GGACTGCAATTGTGTGAATCTTAGG 60.392 44.000 7.40 0.00 0.00 2.69
667 668 5.181811 TGGACTGCAATTGTGTGAATCTTAG 59.818 40.000 7.40 0.00 0.00 2.18
746 752 1.134995 TGCGGCACAGAGAAGTCTATG 60.135 52.381 0.00 1.43 40.75 2.23
815 821 6.587608 ACGTACTTAAGGACAGTTATTTTCGG 59.412 38.462 18.00 0.00 0.00 4.30
890 899 6.943146 AGTGAGATAGAAGTTCAGAGTACACA 59.057 38.462 5.50 0.00 0.00 3.72
1017 1041 4.335594 CGGAATCCCTTGGCTAACTTAAAG 59.664 45.833 0.00 0.00 0.00 1.85
1439 3148 0.530211 GCTCATGCATCGACAGCTCT 60.530 55.000 12.28 0.00 39.41 4.09
1478 3187 2.270923 GCAGTGCGAGATACATCAACA 58.729 47.619 0.00 0.00 0.00 3.33
1552 3261 0.953960 ACCGGCGGACTGAATTGTTC 60.954 55.000 35.78 0.00 0.00 3.18
1569 3278 5.713130 ACAAGGCTTTGGTAGGTTTCAACC 61.713 45.833 13.65 0.00 42.83 3.77
1570 3279 3.383505 ACAAGGCTTTGGTAGGTTTCAAC 59.616 43.478 13.65 0.00 38.66 3.18
1571 3280 3.383185 CACAAGGCTTTGGTAGGTTTCAA 59.617 43.478 13.65 0.00 38.66 2.69
1572 3281 2.955660 CACAAGGCTTTGGTAGGTTTCA 59.044 45.455 13.65 0.00 38.66 2.69
1573 3282 3.219281 TCACAAGGCTTTGGTAGGTTTC 58.781 45.455 13.65 0.00 38.66 2.78
1586 3302 3.076621 TCACATGAGTTCATCACAAGGC 58.923 45.455 0.00 0.00 41.91 4.35
1628 3690 8.262227 ACAGACCGAATAATATGGACTAAAACA 58.738 33.333 0.00 0.00 0.00 2.83
1641 3703 2.026262 ACAGGCCAACAGACCGAATAAT 60.026 45.455 5.01 0.00 0.00 1.28
1679 3768 4.188462 CGGTAAACAGAGCACATTATCCA 58.812 43.478 0.00 0.00 0.00 3.41
1680 3769 4.189231 ACGGTAAACAGAGCACATTATCC 58.811 43.478 0.00 0.00 0.00 2.59
1745 3837 3.441922 GCCCAAAAAGACCAGATCTCTTC 59.558 47.826 0.00 0.00 36.27 2.87
1748 3841 2.751806 CTGCCCAAAAAGACCAGATCTC 59.248 50.000 0.00 0.00 36.27 2.75
1749 3842 2.376518 TCTGCCCAAAAAGACCAGATCT 59.623 45.455 0.00 0.00 40.46 2.75
1750 3843 2.795329 TCTGCCCAAAAAGACCAGATC 58.205 47.619 0.00 0.00 0.00 2.75
1751 3844 2.978156 TCTGCCCAAAAAGACCAGAT 57.022 45.000 0.00 0.00 0.00 2.90
1752 3845 2.746279 TTCTGCCCAAAAAGACCAGA 57.254 45.000 0.00 0.00 0.00 3.86
1753 3846 2.695147 ACTTTCTGCCCAAAAAGACCAG 59.305 45.455 1.41 0.00 36.27 4.00
1754 3847 2.745968 ACTTTCTGCCCAAAAAGACCA 58.254 42.857 1.41 0.00 36.27 4.02
1756 3849 5.874810 AGAAAAACTTTCTGCCCAAAAAGAC 59.125 36.000 1.41 0.00 36.27 3.01
1758 3851 6.545508 CAAGAAAAACTTTCTGCCCAAAAAG 58.454 36.000 2.53 0.00 36.61 2.27
1759 3852 5.106357 GCAAGAAAAACTTTCTGCCCAAAAA 60.106 36.000 2.53 0.00 36.61 1.94
1781 3874 6.818644 GGACTACATGACTTCAGATAAAAGCA 59.181 38.462 0.00 0.00 0.00 3.91
1787 3880 6.663523 TCACAAGGACTACATGACTTCAGATA 59.336 38.462 0.00 0.00 0.00 1.98
1809 3907 3.008375 TGGCCTATCCAGCATATCTTCAC 59.992 47.826 3.32 0.00 40.72 3.18
1823 3921 2.717639 ACAAGATGGTGTGGCCTATC 57.282 50.000 3.32 0.38 38.35 2.08
1863 3969 3.373748 CGCATACAAATCAACAGGCAGTA 59.626 43.478 0.00 0.00 0.00 2.74
1869 3975 2.159476 AGCTGCGCATACAAATCAACAG 60.159 45.455 12.24 0.00 0.00 3.16
1887 3993 2.855209 ATGAACAGAACTGCAGAGCT 57.145 45.000 23.35 13.92 0.00 4.09
1944 4380 2.183679 AGGGAGAAGTCCTAAGCAGTG 58.816 52.381 0.00 0.00 43.36 3.66
1945 4381 2.632763 AGGGAGAAGTCCTAAGCAGT 57.367 50.000 0.00 0.00 43.36 4.40
1952 4388 1.719378 TCAGGAGAAGGGAGAAGTCCT 59.281 52.381 0.00 0.00 43.36 3.85
1954 4390 2.433970 CCATCAGGAGAAGGGAGAAGTC 59.566 54.545 0.00 0.00 36.89 3.01
1986 4422 1.615124 TGCTGAAAGATCCCCGGGA 60.615 57.895 26.32 9.16 34.07 5.14
1987 4423 1.153086 CTGCTGAAAGATCCCCGGG 60.153 63.158 15.80 15.80 34.07 5.73
1989 4425 1.821332 GGCTGCTGAAAGATCCCCG 60.821 63.158 0.00 0.00 34.07 5.73
2016 7708 6.551385 ACAGCAGTTTGAACTCAAGAATAG 57.449 37.500 0.00 0.00 37.08 1.73
2017 7709 6.942532 AACAGCAGTTTGAACTCAAGAATA 57.057 33.333 0.00 0.00 37.08 1.75
2050 7742 3.084039 CAAGCCTTGCCATTTCTCTACA 58.916 45.455 0.00 0.00 0.00 2.74
2051 7743 2.424956 CCAAGCCTTGCCATTTCTCTAC 59.575 50.000 0.00 0.00 0.00 2.59
2052 7744 2.308570 TCCAAGCCTTGCCATTTCTCTA 59.691 45.455 0.00 0.00 0.00 2.43
2053 7745 1.076024 TCCAAGCCTTGCCATTTCTCT 59.924 47.619 0.00 0.00 0.00 3.10
2054 7746 1.475682 CTCCAAGCCTTGCCATTTCTC 59.524 52.381 0.00 0.00 0.00 2.87
2055 7747 1.553706 CTCCAAGCCTTGCCATTTCT 58.446 50.000 0.00 0.00 0.00 2.52
2056 7748 0.108472 GCTCCAAGCCTTGCCATTTC 60.108 55.000 0.00 0.00 34.48 2.17
2057 7749 1.880819 CGCTCCAAGCCTTGCCATTT 61.881 55.000 0.00 0.00 38.18 2.32
2058 7750 2.345760 CGCTCCAAGCCTTGCCATT 61.346 57.895 0.00 0.00 38.18 3.16
2059 7751 2.563013 ATCGCTCCAAGCCTTGCCAT 62.563 55.000 0.00 0.00 38.18 4.40
2060 7752 3.272364 ATCGCTCCAAGCCTTGCCA 62.272 57.895 0.00 0.00 38.18 4.92
2061 7753 2.439156 ATCGCTCCAAGCCTTGCC 60.439 61.111 0.00 0.00 38.18 4.52
2062 7754 1.028868 AAGATCGCTCCAAGCCTTGC 61.029 55.000 0.00 0.00 38.18 4.01
2063 7755 1.012841 GAAGATCGCTCCAAGCCTTG 58.987 55.000 0.00 0.00 38.18 3.61
2064 7756 0.615331 TGAAGATCGCTCCAAGCCTT 59.385 50.000 0.00 0.00 38.18 4.35
2065 7757 0.107945 GTGAAGATCGCTCCAAGCCT 60.108 55.000 0.00 0.00 38.18 4.58
2070 7762 1.900351 CCTGGTGAAGATCGCTCCA 59.100 57.895 10.57 10.57 0.00 3.86
2095 7787 3.199727 TGTCCAATCAGCCATACTAGCAA 59.800 43.478 0.00 0.00 0.00 3.91
2096 7788 2.771372 TGTCCAATCAGCCATACTAGCA 59.229 45.455 0.00 0.00 0.00 3.49
2097 7789 3.475566 TGTCCAATCAGCCATACTAGC 57.524 47.619 0.00 0.00 0.00 3.42
2098 7790 4.769688 TGTTGTCCAATCAGCCATACTAG 58.230 43.478 0.00 0.00 0.00 2.57
2113 7809 6.762661 TGGTAGTGTTTACTAACTTGTTGTCC 59.237 38.462 4.38 0.00 45.46 4.02
2131 7827 7.979444 TTTCTTCCAGTATCTTTTGGTAGTG 57.021 36.000 0.00 0.00 34.55 2.74
2250 8123 2.158726 TCCAGTACAACTGTTGAACCCC 60.159 50.000 26.00 8.98 44.50 4.95
2329 8232 1.228003 TGCGTGAATTTGGGACGGT 60.228 52.632 0.00 0.00 33.68 4.83
2363 8294 3.532155 GGAGCGGCTCAGGTCGAT 61.532 66.667 29.33 0.00 43.57 3.59
2406 8349 4.683334 GCGGGCAGTGAACAACGC 62.683 66.667 0.00 0.00 40.19 4.84
2459 8441 4.040047 TCAATCACATCTACACCAGGGAT 58.960 43.478 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.