Multiple sequence alignment - TraesCS1D01G350800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G350800 chr1D 100.000 5662 0 0 1 5662 436210650 436216311 0.000000e+00 10456.0
1 TraesCS1D01G350800 chr1D 96.875 32 1 0 3366 3397 492984716 492984685 3.000000e-03 54.7
2 TraesCS1D01G350800 chr1A 91.639 1806 105 16 716 2500 533462949 533464729 0.000000e+00 2457.0
3 TraesCS1D01G350800 chr1A 92.776 1675 73 20 3450 5098 533465957 533467609 0.000000e+00 2379.0
4 TraesCS1D01G350800 chr1A 91.487 881 46 11 2494 3369 533465103 533465959 0.000000e+00 1184.0
5 TraesCS1D01G350800 chr1A 86.056 753 56 28 1 715 533462043 533462784 0.000000e+00 763.0
6 TraesCS1D01G350800 chr1A 86.480 392 25 16 5276 5662 533467802 533468170 6.830000e-109 405.0
7 TraesCS1D01G350800 chr1A 95.181 166 8 0 5098 5263 250067355 250067520 4.350000e-66 263.0
8 TraesCS1D01G350800 chr1A 93.373 166 11 0 5098 5263 284322785 284322620 4.380000e-61 246.0
9 TraesCS1D01G350800 chr1A 97.297 37 0 1 3420 3455 356468602 356468566 1.700000e-05 62.1
10 TraesCS1D01G350800 chr1B 90.737 1317 70 25 3447 4727 591232089 591233389 0.000000e+00 1709.0
11 TraesCS1D01G350800 chr1B 89.048 1050 85 14 718 1750 591229145 591230181 0.000000e+00 1275.0
12 TraesCS1D01G350800 chr1B 92.719 879 37 12 2494 3369 591231240 591232094 0.000000e+00 1243.0
13 TraesCS1D01G350800 chr1B 94.703 774 23 4 1735 2500 591230360 591231123 0.000000e+00 1186.0
14 TraesCS1D01G350800 chr1B 90.172 580 37 10 1 565 591228277 591228851 0.000000e+00 737.0
15 TraesCS1D01G350800 chr1B 95.181 166 8 0 5098 5263 423584107 423584272 4.350000e-66 263.0
16 TraesCS1D01G350800 chr1B 86.364 154 10 7 4763 4906 591233384 591233536 2.110000e-34 158.0
17 TraesCS1D01G350800 chr1B 93.902 82 5 0 3366 3447 387302089 387302008 2.140000e-24 124.0
18 TraesCS1D01G350800 chr1B 79.720 143 11 5 5525 5662 591233975 591234104 2.810000e-13 87.9
19 TraesCS1D01G350800 chr3B 88.200 661 69 5 1770 2428 565434457 565433804 0.000000e+00 780.0
20 TraesCS1D01G350800 chr3B 88.200 661 68 6 1770 2428 565564138 565563486 0.000000e+00 780.0
21 TraesCS1D01G350800 chr3B 84.477 612 59 19 716 1291 565435523 565434912 6.360000e-159 571.0
22 TraesCS1D01G350800 chr3B 85.609 542 45 20 4240 4754 565429168 565428633 6.450000e-149 538.0
23 TraesCS1D01G350800 chr3B 85.424 542 46 21 4240 4754 565561732 565561197 3.000000e-147 532.0
24 TraesCS1D01G350800 chr3B 83.051 590 67 16 1193 1770 565564801 565564233 6.550000e-139 505.0
25 TraesCS1D01G350800 chr3B 83.914 373 40 15 716 1086 565565322 565564968 7.030000e-89 339.0
26 TraesCS1D01G350800 chr3B 83.699 319 36 6 2817 3120 565430294 565429977 2.580000e-73 287.0
27 TraesCS1D01G350800 chr3B 86.920 237 22 6 1437 1671 565434905 565434676 2.020000e-64 257.0
28 TraesCS1D01G350800 chr3B 95.333 150 7 0 1052 1201 565564975 565564826 7.330000e-59 239.0
29 TraesCS1D01G350800 chr3B 84.358 179 13 7 3174 3341 565562108 565561934 1.630000e-35 161.0
30 TraesCS1D01G350800 chr3B 85.185 162 8 8 3174 3323 565429883 565429726 9.830000e-33 152.0
31 TraesCS1D01G350800 chr3B 88.889 90 9 1 3367 3455 672075512 672075601 6.000000e-20 110.0
32 TraesCS1D01G350800 chr3A 86.405 662 79 7 1770 2428 571398614 571397961 0.000000e+00 713.0
33 TraesCS1D01G350800 chr3A 86.004 543 42 23 4240 4754 571395872 571395336 8.290000e-153 551.0
34 TraesCS1D01G350800 chr3A 84.122 592 61 19 1191 1770 571399279 571398709 4.990000e-150 542.0
35 TraesCS1D01G350800 chr3A 86.437 494 53 10 716 1201 571399790 571399303 3.880000e-146 529.0
36 TraesCS1D01G350800 chr3A 84.876 443 49 8 2692 3118 571397396 571396956 1.130000e-116 431.0
37 TraesCS1D01G350800 chr3A 78.824 255 29 14 461 696 571400244 571399996 1.270000e-31 148.0
38 TraesCS1D01G350800 chr3A 81.452 124 6 9 3174 3283 571396860 571396740 1.010000e-12 86.1
39 TraesCS1D01G350800 chr3D 88.163 490 42 13 716 1201 433193758 433193281 2.290000e-158 569.0
40 TraesCS1D01G350800 chr3D 86.531 542 40 22 4240 4754 433189859 433189324 2.960000e-157 566.0
41 TraesCS1D01G350800 chr3D 83.277 592 65 20 1191 1770 433193258 433192689 1.090000e-141 514.0
42 TraesCS1D01G350800 chr3D 83.973 443 53 8 2692 3118 433191461 433191021 5.280000e-110 409.0
43 TraesCS1D01G350800 chr3D 84.973 366 44 6 2066 2428 433192337 433191980 1.500000e-95 361.0
44 TraesCS1D01G350800 chr3D 90.698 258 23 1 1770 2027 433192593 433192337 5.430000e-90 342.0
45 TraesCS1D01G350800 chr3D 81.319 182 16 10 3174 3341 433190925 433190748 1.280000e-26 132.0
46 TraesCS1D01G350800 chr3D 83.333 90 15 0 3366 3455 556857944 556857855 3.640000e-12 84.2
47 TraesCS1D01G350800 chr7B 95.758 165 7 0 5099 5263 394149736 394149572 3.360000e-67 267.0
48 TraesCS1D01G350800 chr7B 94.578 166 9 0 5098 5263 424832361 424832526 2.020000e-64 257.0
49 TraesCS1D01G350800 chr2A 95.181 166 8 0 5098 5263 403801830 403801995 4.350000e-66 263.0
50 TraesCS1D01G350800 chr4A 93.939 165 10 0 5099 5263 63717904 63718068 3.390000e-62 250.0
51 TraesCS1D01G350800 chr4A 92.614 176 9 1 5092 5263 67022694 67022519 3.390000e-62 250.0
52 TraesCS1D01G350800 chr6B 92.899 169 12 0 5095 5263 144362761 144362929 4.380000e-61 246.0
53 TraesCS1D01G350800 chr5D 86.170 94 6 3 3366 3452 420934062 420933969 1.680000e-15 95.3
54 TraesCS1D01G350800 chr2B 83.529 85 4 2 3367 3451 128378011 128377937 2.830000e-08 71.3
55 TraesCS1D01G350800 chr2D 95.122 41 2 0 3411 3451 79384637 79384597 1.320000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G350800 chr1D 436210650 436216311 5661 False 10456.000000 10456 100.000000 1 5662 1 chr1D.!!$F1 5661
1 TraesCS1D01G350800 chr1A 533462043 533468170 6127 False 1437.600000 2457 89.687600 1 5662 5 chr1A.!!$F2 5661
2 TraesCS1D01G350800 chr1B 591228277 591234104 5827 False 913.700000 1709 89.066143 1 5662 7 chr1B.!!$F2 5661
3 TraesCS1D01G350800 chr3B 565428633 565435523 6890 True 430.833333 780 85.681667 716 4754 6 chr3B.!!$R1 4038
4 TraesCS1D01G350800 chr3B 565561197 565565322 4125 True 426.000000 780 86.713333 716 4754 6 chr3B.!!$R2 4038
5 TraesCS1D01G350800 chr3A 571395336 571400244 4908 True 428.585714 713 84.017143 461 4754 7 chr3A.!!$R1 4293
6 TraesCS1D01G350800 chr3D 433189324 433193758 4434 True 413.285714 569 85.562000 716 4754 7 chr3D.!!$R2 4038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1268 0.668401 GCAAACTGTTCATGCAGGGC 60.668 55.000 11.29 0.0 40.59 5.19 F
967 1274 1.654954 CTGTTCATGCAGGGCTGAGC 61.655 60.000 0.00 0.0 33.11 4.26 F
2426 3181 3.360867 ACCATGTTCAAACTGGTGTTCA 58.639 40.909 12.97 0.0 38.28 3.18 F
3942 8890 0.037697 TTCAGGACACGGTTCCATCG 60.038 55.000 7.27 0.0 38.25 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 3083 2.697229 CTGAGATGGGAGATACACTGCA 59.303 50.000 0.00 0.0 38.74 4.41 R
2442 3205 3.523564 ACAGAGGGGAGCTTGCTAAAATA 59.476 43.478 0.00 0.0 0.00 1.40 R
3975 8923 0.173481 TTCTCAGCCGGACATCTTCG 59.827 55.000 5.05 0.0 0.00 3.79 R
5103 10129 0.038744 ACAAGGTGGAGCATTGGGAG 59.961 55.000 0.00 0.0 42.57 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 95 2.438614 TCGGCCTCGGAGTCTGAG 60.439 66.667 20.46 20.46 36.95 3.35
203 217 5.535753 AAACAGAAAACAATTCCAGAGGG 57.464 39.130 0.00 0.00 0.00 4.30
266 283 1.513858 AGCCCGGGTATTTGGTGATA 58.486 50.000 24.63 0.00 0.00 2.15
349 372 5.983333 AGAAGATCCTCCACATATTTGGT 57.017 39.130 7.77 0.00 37.93 3.67
352 375 5.041191 AGATCCTCCACATATTTGGTGAC 57.959 43.478 10.82 3.65 38.54 3.67
382 405 1.497722 GCGCTCCCGAAAAACAGAG 59.502 57.895 0.00 0.00 36.29 3.35
404 427 3.607370 AAAAGCGCGGGAGGAGACC 62.607 63.158 8.83 0.00 0.00 3.85
479 502 3.237741 CTCTCATCTCCCCGCCCC 61.238 72.222 0.00 0.00 0.00 5.80
658 706 2.044946 CCGAGCCTTTCCCCCTTG 60.045 66.667 0.00 0.00 0.00 3.61
696 756 1.077501 ATGGCGGCTGCTGTTGTAT 60.078 52.632 18.85 0.10 42.25 2.29
699 759 1.308998 GGCGGCTGCTGTTGTATAAT 58.691 50.000 18.85 0.00 42.25 1.28
700 760 1.002468 GGCGGCTGCTGTTGTATAATG 60.002 52.381 18.85 0.00 42.25 1.90
701 761 1.670811 GCGGCTGCTGTTGTATAATGT 59.329 47.619 11.21 0.00 38.39 2.71
702 762 2.097466 GCGGCTGCTGTTGTATAATGTT 59.903 45.455 11.21 0.00 38.39 2.71
703 763 3.788797 GCGGCTGCTGTTGTATAATGTTC 60.789 47.826 11.21 0.00 38.39 3.18
706 766 5.293324 CGGCTGCTGTTGTATAATGTTCTTA 59.707 40.000 0.00 0.00 0.00 2.10
746 1021 4.220821 GGTCTCTCATGTGAGTTCCAAGTA 59.779 45.833 20.99 0.49 42.60 2.24
750 1025 6.382282 TCTCTCATGTGAGTTCCAAGTATCAT 59.618 38.462 20.99 0.00 42.60 2.45
760 1035 7.174946 TGAGTTCCAAGTATCATTTCTTGAACC 59.825 37.037 6.50 5.08 42.22 3.62
772 1049 4.712122 TTCTTGAACCTCCAAACAACAC 57.288 40.909 0.00 0.00 0.00 3.32
780 1063 4.277476 ACCTCCAAACAACACAATTCAGA 58.723 39.130 0.00 0.00 0.00 3.27
792 1083 9.037737 ACAACACAATTCAGATTCAATTTCAAG 57.962 29.630 0.00 0.00 0.00 3.02
820 1111 4.464008 TGTCTGGGAGATTTGATATTGGC 58.536 43.478 0.00 0.00 0.00 4.52
825 1116 3.571401 GGGAGATTTGATATTGGCACCAG 59.429 47.826 0.00 0.00 0.00 4.00
833 1124 5.327616 TGATATTGGCACCAGTTCAATTG 57.672 39.130 0.00 0.00 33.72 2.32
855 1158 3.322828 GCATGGCCCTCAATATCAACATT 59.677 43.478 0.00 0.00 0.00 2.71
875 1178 4.451629 TTCAAACGGAGCCTTAGAGTAG 57.548 45.455 0.00 0.00 0.00 2.57
876 1179 2.165845 TCAAACGGAGCCTTAGAGTAGC 59.834 50.000 0.00 0.00 0.00 3.58
882 1188 1.335496 GAGCCTTAGAGTAGCACTCCG 59.665 57.143 11.24 3.21 46.18 4.63
883 1189 1.104630 GCCTTAGAGTAGCACTCCGT 58.895 55.000 11.24 0.01 46.18 4.69
886 1192 4.070716 GCCTTAGAGTAGCACTCCGTATA 58.929 47.826 11.24 0.00 46.18 1.47
887 1193 4.701171 GCCTTAGAGTAGCACTCCGTATAT 59.299 45.833 11.24 0.00 46.18 0.86
906 1212 7.657761 CCGTATATGAATATAGGAGGCCAAATC 59.342 40.741 5.01 0.00 34.63 2.17
909 1215 6.708885 ATGAATATAGGAGGCCAAATCTGA 57.291 37.500 5.01 0.00 0.00 3.27
940 1246 2.237143 TGGACTTTCTCTCATCGGCATT 59.763 45.455 0.00 0.00 0.00 3.56
962 1268 0.668401 GCAAACTGTTCATGCAGGGC 60.668 55.000 11.29 0.00 40.59 5.19
967 1274 1.654954 CTGTTCATGCAGGGCTGAGC 61.655 60.000 0.00 0.00 33.11 4.26
1020 1329 5.350365 TGAAATGCCTTGTTACTACGATGTC 59.650 40.000 0.00 0.00 0.00 3.06
1201 1537 4.325741 CGAGAGAAACAGTGTAAGCATCTG 59.674 45.833 0.00 0.00 35.60 2.90
1225 1596 7.259882 TGTCCAATGACATTTCTGCATTTATC 58.740 34.615 0.00 0.00 46.40 1.75
1422 1794 4.388577 AGGTGCTTTCTTATTTCCCTGT 57.611 40.909 0.00 0.00 0.00 4.00
1469 1849 6.016276 GGGAGTTAGATGCTTTGTTTTTGAGA 60.016 38.462 0.00 0.00 0.00 3.27
1472 1852 7.771183 AGTTAGATGCTTTGTTTTTGAGAACA 58.229 30.769 0.00 0.00 37.73 3.18
1490 1870 3.874392 ACATTTTCTTGCTACCATGGC 57.126 42.857 13.04 0.00 0.00 4.40
1677 2058 7.230712 CACCCAGAAGTAGGTTTCTTTGTATTT 59.769 37.037 0.00 0.00 35.28 1.40
1701 2112 8.801715 TTTGTTTTGCATCTGTAGAAATTCTC 57.198 30.769 0.00 0.00 0.00 2.87
1916 2616 6.033196 CGACCTCAGTTACACGTACTATTTTG 59.967 42.308 0.00 0.00 0.00 2.44
2072 2772 7.447238 AGCCTTAGACATCTTATAGTCTCAGTC 59.553 40.741 0.00 0.00 43.59 3.51
2284 2991 9.836864 AAGATGCAGTTGATACTATGAATTGTA 57.163 29.630 0.00 0.00 31.96 2.41
2374 3083 7.552459 ACTAAAACATGCTTTTAACCACACTT 58.448 30.769 0.00 0.00 0.00 3.16
2426 3181 3.360867 ACCATGTTCAAACTGGTGTTCA 58.639 40.909 12.97 0.00 38.28 3.18
2442 3205 5.587043 TGGTGTTCAACTGTTCTAATTTCGT 59.413 36.000 0.00 0.00 0.00 3.85
2621 3780 1.632409 ACAATGACCTCTGATGCCACT 59.368 47.619 0.00 0.00 0.00 4.00
2681 3841 7.774625 TGTGTTGACATATGGTGATATGAACAT 59.225 33.333 7.80 0.00 42.96 2.71
2711 4330 8.697292 AGACCATAACTAAGTCTTCCTGAATAC 58.303 37.037 0.00 0.00 37.60 1.89
2751 4370 6.935240 TGAGGTCTATCTCTTTTCAAAGGA 57.065 37.500 0.00 0.00 36.67 3.36
2950 7148 5.818678 TGTAGAGGTACCACTTGACAATT 57.181 39.130 17.49 0.00 0.00 2.32
2990 7188 6.914665 TGAGTGATCCTAATTGGGATTTGAT 58.085 36.000 22.86 10.73 45.18 2.57
3091 7289 1.202325 CCAATGTGTCATTCCATGGCG 60.202 52.381 6.96 0.00 37.81 5.69
3100 7298 2.957680 TCATTCCATGGCGTGCATTATT 59.042 40.909 6.96 0.00 0.00 1.40
3105 7303 2.159268 CCATGGCGTGCATTATTTGACA 60.159 45.455 0.00 0.00 0.00 3.58
3106 7304 2.627863 TGGCGTGCATTATTTGACAC 57.372 45.000 0.00 0.00 0.00 3.67
3107 7305 1.882623 TGGCGTGCATTATTTGACACA 59.117 42.857 0.00 0.00 34.21 3.72
3108 7306 2.491298 TGGCGTGCATTATTTGACACAT 59.509 40.909 0.00 0.00 34.21 3.21
3109 7307 3.056962 TGGCGTGCATTATTTGACACATT 60.057 39.130 0.00 0.00 34.21 2.71
3110 7308 3.547468 GGCGTGCATTATTTGACACATTC 59.453 43.478 0.00 0.00 34.21 2.67
3111 7309 4.414852 GCGTGCATTATTTGACACATTCT 58.585 39.130 0.00 0.00 34.21 2.40
3112 7310 4.858692 GCGTGCATTATTTGACACATTCTT 59.141 37.500 0.00 0.00 34.21 2.52
3113 7311 5.345741 GCGTGCATTATTTGACACATTCTTT 59.654 36.000 0.00 0.00 34.21 2.52
3114 7312 6.128849 GCGTGCATTATTTGACACATTCTTTT 60.129 34.615 0.00 0.00 34.21 2.27
3115 7313 7.061673 GCGTGCATTATTTGACACATTCTTTTA 59.938 33.333 0.00 0.00 34.21 1.52
3116 7314 9.075519 CGTGCATTATTTGACACATTCTTTTAT 57.924 29.630 0.00 0.00 34.21 1.40
3118 7316 9.368674 TGCATTATTTGACACATTCTTTTATGG 57.631 29.630 0.00 0.00 0.00 2.74
3119 7317 9.369904 GCATTATTTGACACATTCTTTTATGGT 57.630 29.630 0.00 0.00 0.00 3.55
3204 7462 3.007940 TCTGGTTACTGTCCACAATCAGG 59.992 47.826 2.44 0.00 36.17 3.86
3323 7595 6.546484 AGGGATCCCATGAAGTTATTATGTG 58.454 40.000 32.69 0.00 38.92 3.21
3372 8307 6.997942 ACTCCCTCCATTTCTAATACTACC 57.002 41.667 0.00 0.00 0.00 3.18
3373 8308 6.694611 ACTCCCTCCATTTCTAATACTACCT 58.305 40.000 0.00 0.00 0.00 3.08
3374 8309 6.783482 ACTCCCTCCATTTCTAATACTACCTC 59.217 42.308 0.00 0.00 0.00 3.85
3375 8310 6.082707 TCCCTCCATTTCTAATACTACCTCC 58.917 44.000 0.00 0.00 0.00 4.30
3376 8311 5.047235 CCCTCCATTTCTAATACTACCTCCG 60.047 48.000 0.00 0.00 0.00 4.63
3377 8312 5.539193 CCTCCATTTCTAATACTACCTCCGT 59.461 44.000 0.00 0.00 0.00 4.69
3378 8313 6.401047 TCCATTTCTAATACTACCTCCGTG 57.599 41.667 0.00 0.00 0.00 4.94
3379 8314 4.989168 CCATTTCTAATACTACCTCCGTGC 59.011 45.833 0.00 0.00 0.00 5.34
3380 8315 4.660789 TTTCTAATACTACCTCCGTGCC 57.339 45.455 0.00 0.00 0.00 5.01
3381 8316 3.301794 TCTAATACTACCTCCGTGCCA 57.698 47.619 0.00 0.00 0.00 4.92
3382 8317 3.634504 TCTAATACTACCTCCGTGCCAA 58.365 45.455 0.00 0.00 0.00 4.52
3383 8318 4.025360 TCTAATACTACCTCCGTGCCAAA 58.975 43.478 0.00 0.00 0.00 3.28
3384 8319 3.706600 AATACTACCTCCGTGCCAAAA 57.293 42.857 0.00 0.00 0.00 2.44
3385 8320 3.926058 ATACTACCTCCGTGCCAAAAT 57.074 42.857 0.00 0.00 0.00 1.82
3386 8321 5.362105 AATACTACCTCCGTGCCAAAATA 57.638 39.130 0.00 0.00 0.00 1.40
3387 8322 3.926058 ACTACCTCCGTGCCAAAATAT 57.074 42.857 0.00 0.00 0.00 1.28
3388 8323 6.675413 ATACTACCTCCGTGCCAAAATATA 57.325 37.500 0.00 0.00 0.00 0.86
3389 8324 5.562298 ACTACCTCCGTGCCAAAATATAT 57.438 39.130 0.00 0.00 0.00 0.86
3390 8325 5.305585 ACTACCTCCGTGCCAAAATATATG 58.694 41.667 0.00 0.00 0.00 1.78
3391 8326 4.431416 ACCTCCGTGCCAAAATATATGA 57.569 40.909 0.00 0.00 0.00 2.15
3392 8327 4.134563 ACCTCCGTGCCAAAATATATGAC 58.865 43.478 0.00 0.00 0.00 3.06
3393 8328 4.133820 CCTCCGTGCCAAAATATATGACA 58.866 43.478 0.00 0.00 0.00 3.58
3394 8329 4.761739 CCTCCGTGCCAAAATATATGACAT 59.238 41.667 0.00 0.00 0.00 3.06
3395 8330 5.241506 CCTCCGTGCCAAAATATATGACATT 59.758 40.000 0.00 0.00 0.00 2.71
3396 8331 6.239008 CCTCCGTGCCAAAATATATGACATTT 60.239 38.462 0.00 0.00 0.00 2.32
3397 8332 7.106439 TCCGTGCCAAAATATATGACATTTT 57.894 32.000 0.00 0.00 36.31 1.82
3398 8333 6.977502 TCCGTGCCAAAATATATGACATTTTG 59.022 34.615 12.38 12.38 46.10 2.44
3412 8347 7.865706 ATGACATTTTGGTAGGCTAAACTAG 57.134 36.000 0.00 0.00 0.00 2.57
3438 8373 9.166126 GCTTACTAAAACGTCATATATTTTGGC 57.834 33.333 0.00 0.00 29.64 4.52
3442 8377 8.134895 ACTAAAACGTCATATATTTTGGCATGG 58.865 33.333 0.00 0.00 29.64 3.66
3443 8378 6.707440 AAACGTCATATATTTTGGCATGGA 57.293 33.333 0.00 0.00 0.00 3.41
3444 8379 5.947228 ACGTCATATATTTTGGCATGGAG 57.053 39.130 0.00 0.00 0.00 3.86
3445 8380 4.761739 ACGTCATATATTTTGGCATGGAGG 59.238 41.667 0.00 0.00 0.00 4.30
3446 8381 4.761739 CGTCATATATTTTGGCATGGAGGT 59.238 41.667 0.00 0.00 0.00 3.85
3447 8382 5.937540 CGTCATATATTTTGGCATGGAGGTA 59.062 40.000 0.00 0.00 0.00 3.08
3448 8383 6.092670 CGTCATATATTTTGGCATGGAGGTAG 59.907 42.308 0.00 0.00 0.00 3.18
3463 8398 7.500992 CATGGAGGTAGTACATTTCACTGTAT 58.499 38.462 2.06 0.00 34.33 2.29
3539 8479 6.172630 CCATTTCCCCCTTTTGTCTATTTTG 58.827 40.000 0.00 0.00 0.00 2.44
3594 8534 4.947388 TGACTAGCACAAAACTCCAAAAGT 59.053 37.500 0.00 0.00 41.10 2.66
3608 8548 8.983702 AACTCCAAAAGTTAATAAGTGGTGTA 57.016 30.769 0.00 0.00 46.55 2.90
3653 8593 1.247567 CCCCACTTTTGCTGGTACTG 58.752 55.000 0.00 0.00 0.00 2.74
3699 8639 4.965283 TGGATTATTTCCCCACCTTTCT 57.035 40.909 0.00 0.00 44.77 2.52
3702 8642 5.719563 TGGATTATTTCCCCACCTTTCTTTC 59.280 40.000 0.00 0.00 44.77 2.62
3763 8703 4.263550 ACTCAGCAGTGAACTAGGAGTAGA 60.264 45.833 0.00 0.00 32.05 2.59
3778 8718 6.441088 AGGAGTAGAACTGGAGAACATTTT 57.559 37.500 0.00 0.00 0.00 1.82
3782 8722 5.827797 AGTAGAACTGGAGAACATTTTTGCA 59.172 36.000 0.00 0.00 0.00 4.08
3793 8733 8.814235 GGAGAACATTTTTGCATATCAGATTTG 58.186 33.333 0.00 0.00 0.00 2.32
3840 8780 1.506493 CCACAGTCAGCAGTGAACTC 58.494 55.000 0.00 0.00 37.97 3.01
3858 8798 2.242708 ACTCGGAGTAGGACTGGAGAAT 59.757 50.000 9.33 0.00 32.65 2.40
3859 8799 2.621055 CTCGGAGTAGGACTGGAGAATG 59.379 54.545 0.00 0.00 30.91 2.67
3864 8805 4.383226 GGAGTAGGACTGGAGAATGTTTCC 60.383 50.000 0.00 0.00 35.20 3.13
3942 8890 0.037697 TTCAGGACACGGTTCCATCG 60.038 55.000 7.27 0.00 38.25 3.84
3975 8923 4.602995 CTGTTAGCCTGATAAGTCGAGTC 58.397 47.826 0.00 0.00 0.00 3.36
4032 8980 8.932945 TCGTAAACTAGTCGAGTCTCTTAATA 57.067 34.615 0.00 0.00 37.44 0.98
4088 9037 8.816894 GGAATGGATCAGTAATGAGTAGGAATA 58.183 37.037 0.00 0.00 0.00 1.75
4179 9129 9.685276 TGATGTATTGGAACATTTCAGATAACT 57.315 29.630 0.00 0.00 40.17 2.24
4218 9168 2.380084 TAGGTTGAATCACGACTGCC 57.620 50.000 0.00 0.00 33.64 4.85
4635 9611 3.073062 TGGAAGGAAGAGGAAGACAAAGG 59.927 47.826 0.00 0.00 0.00 3.11
4761 9746 3.660501 AGGAACGAAAAAGGCAATTCC 57.339 42.857 0.00 0.00 36.63 3.01
4820 9805 1.964223 ACCTGATGTGTCTGTCGTCTT 59.036 47.619 0.00 0.00 0.00 3.01
4851 9838 4.556501 CGGCAACTCTTGTTTTTAGATGCA 60.557 41.667 0.00 0.00 32.08 3.96
4853 9840 5.574443 GGCAACTCTTGTTTTTAGATGCATC 59.426 40.000 19.37 19.37 32.08 3.91
4869 9857 2.294233 TGCATCTTGACTGCAACTTTCC 59.706 45.455 0.00 0.00 46.06 3.13
4985 10011 5.393461 CCTTCTCTGCAAACAAACTTTCTGT 60.393 40.000 0.00 0.00 0.00 3.41
4996 10022 8.345565 CAAACAAACTTTCTGTGTAGATAAGCT 58.654 33.333 0.00 0.00 31.81 3.74
5067 10093 6.036300 GTGCAATATCATTTGGTGGTGAAATG 59.964 38.462 0.00 0.00 40.64 2.32
5082 10108 4.479619 GTGAAATGGTCAGCTTCATTGTC 58.520 43.478 7.27 7.76 36.74 3.18
5093 10119 7.265673 GTCAGCTTCATTGTCAGTTAGGTATA 58.734 38.462 0.00 0.00 0.00 1.47
5094 10120 7.222999 GTCAGCTTCATTGTCAGTTAGGTATAC 59.777 40.741 0.00 0.00 0.00 1.47
5095 10121 7.124298 TCAGCTTCATTGTCAGTTAGGTATACT 59.876 37.037 2.25 0.00 0.00 2.12
5097 10123 8.978472 AGCTTCATTGTCAGTTAGGTATACTTA 58.022 33.333 2.25 0.00 0.00 2.24
5098 10124 9.250624 GCTTCATTGTCAGTTAGGTATACTTAG 57.749 37.037 2.25 0.00 0.00 2.18
5099 10125 9.751542 CTTCATTGTCAGTTAGGTATACTTAGG 57.248 37.037 2.25 0.00 0.00 2.69
5100 10126 7.723324 TCATTGTCAGTTAGGTATACTTAGGC 58.277 38.462 2.25 0.00 0.00 3.93
5101 10127 6.475596 TTGTCAGTTAGGTATACTTAGGCC 57.524 41.667 2.25 0.00 0.00 5.19
5102 10128 4.897670 TGTCAGTTAGGTATACTTAGGCCC 59.102 45.833 0.00 0.00 0.00 5.80
5103 10129 4.282957 GTCAGTTAGGTATACTTAGGCCCC 59.717 50.000 0.00 0.00 0.00 5.80
5105 10131 4.527427 CAGTTAGGTATACTTAGGCCCCTC 59.473 50.000 0.00 0.00 0.00 4.30
5107 10133 1.151627 AGGTATACTTAGGCCCCTCCC 59.848 57.143 0.00 0.00 34.51 4.30
5108 10134 1.132624 GGTATACTTAGGCCCCTCCCA 60.133 57.143 0.00 0.00 34.51 4.37
5109 10135 2.697967 GTATACTTAGGCCCCTCCCAA 58.302 52.381 0.00 0.00 34.51 4.12
5111 10137 1.518367 TACTTAGGCCCCTCCCAATG 58.482 55.000 0.00 0.00 34.51 2.82
5112 10138 1.152673 CTTAGGCCCCTCCCAATGC 60.153 63.158 0.00 0.00 34.51 3.56
5113 10139 1.622442 TTAGGCCCCTCCCAATGCT 60.622 57.895 0.00 0.00 34.51 3.79
5114 10140 1.645402 TTAGGCCCCTCCCAATGCTC 61.645 60.000 0.00 0.00 34.51 4.26
5115 10141 4.529731 GGCCCCTCCCAATGCTCC 62.530 72.222 0.00 0.00 0.00 4.70
5116 10142 3.743017 GCCCCTCCCAATGCTCCA 61.743 66.667 0.00 0.00 0.00 3.86
5117 10143 2.276740 CCCCTCCCAATGCTCCAC 59.723 66.667 0.00 0.00 0.00 4.02
5118 10144 2.276740 CCCTCCCAATGCTCCACC 59.723 66.667 0.00 0.00 0.00 4.61
5119 10145 2.311854 CCCTCCCAATGCTCCACCT 61.312 63.158 0.00 0.00 0.00 4.00
5120 10146 1.693640 CCTCCCAATGCTCCACCTT 59.306 57.895 0.00 0.00 0.00 3.50
5121 10147 0.682209 CCTCCCAATGCTCCACCTTG 60.682 60.000 0.00 0.00 0.00 3.61
5122 10148 0.038744 CTCCCAATGCTCCACCTTGT 59.961 55.000 0.00 0.00 0.00 3.16
5124 10150 1.004277 TCCCAATGCTCCACCTTGTAC 59.996 52.381 0.00 0.00 0.00 2.90
5126 10152 2.086869 CCAATGCTCCACCTTGTACAG 58.913 52.381 0.00 0.00 0.00 2.74
5135 10161 3.540211 CCTTGTACAGGTGCTGAGG 57.460 57.895 4.10 0.00 37.99 3.86
5137 10163 1.072331 CCTTGTACAGGTGCTGAGGTT 59.928 52.381 4.10 0.00 37.99 3.50
5140 10166 0.955919 GTACAGGTGCTGAGGTTGCC 60.956 60.000 0.00 0.00 35.18 4.52
5141 10167 1.414866 TACAGGTGCTGAGGTTGCCA 61.415 55.000 0.00 0.00 35.18 4.92
5142 10168 1.529010 CAGGTGCTGAGGTTGCCAA 60.529 57.895 0.00 0.00 32.44 4.52
5143 10169 1.529244 AGGTGCTGAGGTTGCCAAC 60.529 57.895 0.00 0.00 0.00 3.77
5145 10171 0.250727 GGTGCTGAGGTTGCCAACTA 60.251 55.000 7.62 0.00 0.00 2.24
5146 10172 1.604604 GTGCTGAGGTTGCCAACTAA 58.395 50.000 7.62 0.00 0.00 2.24
5147 10173 1.537202 GTGCTGAGGTTGCCAACTAAG 59.463 52.381 7.62 4.22 0.00 2.18
5148 10174 0.523519 GCTGAGGTTGCCAACTAAGC 59.476 55.000 7.62 10.15 0.00 3.09
5149 10175 1.896220 CTGAGGTTGCCAACTAAGCA 58.104 50.000 7.62 0.54 38.81 3.91
5160 10186 4.584325 TGCCAACTAAGCAAAAAGTCTGAT 59.416 37.500 0.00 0.00 37.28 2.90
5162 10188 5.507985 GCCAACTAAGCAAAAAGTCTGATGT 60.508 40.000 0.00 0.00 0.00 3.06
5163 10189 5.916883 CCAACTAAGCAAAAAGTCTGATGTG 59.083 40.000 0.00 0.00 0.00 3.21
5164 10190 5.695851 ACTAAGCAAAAAGTCTGATGTGG 57.304 39.130 0.00 0.00 0.00 4.17
5165 10191 3.375782 AAGCAAAAAGTCTGATGTGGC 57.624 42.857 0.00 0.00 0.00 5.01
5166 10192 2.309613 AGCAAAAAGTCTGATGTGGCA 58.690 42.857 0.00 0.00 0.00 4.92
5167 10193 2.895404 AGCAAAAAGTCTGATGTGGCAT 59.105 40.909 0.00 0.00 0.00 4.40
5168 10194 2.991190 GCAAAAAGTCTGATGTGGCATG 59.009 45.455 0.00 0.00 0.00 4.06
5169 10195 2.991190 CAAAAAGTCTGATGTGGCATGC 59.009 45.455 9.90 9.90 0.00 4.06
5170 10196 2.211250 AAAGTCTGATGTGGCATGCT 57.789 45.000 18.92 0.00 0.00 3.79
5172 10198 2.616634 AGTCTGATGTGGCATGCTAG 57.383 50.000 18.92 6.92 0.00 3.42
5173 10199 1.836166 AGTCTGATGTGGCATGCTAGT 59.164 47.619 18.92 2.76 0.00 2.57
5174 10200 2.238144 AGTCTGATGTGGCATGCTAGTT 59.762 45.455 18.92 0.92 0.00 2.24
5175 10201 3.452264 AGTCTGATGTGGCATGCTAGTTA 59.548 43.478 18.92 1.05 0.00 2.24
5177 10203 4.272018 GTCTGATGTGGCATGCTAGTTAAG 59.728 45.833 18.92 9.34 0.00 1.85
5179 10205 4.842574 TGATGTGGCATGCTAGTTAAGAA 58.157 39.130 18.92 0.00 0.00 2.52
5181 10207 4.551702 TGTGGCATGCTAGTTAAGAAGA 57.448 40.909 18.92 0.00 0.00 2.87
5182 10208 4.507710 TGTGGCATGCTAGTTAAGAAGAG 58.492 43.478 18.92 0.00 0.00 2.85
5183 10209 4.222810 TGTGGCATGCTAGTTAAGAAGAGA 59.777 41.667 18.92 0.00 0.00 3.10
5184 10210 4.808364 GTGGCATGCTAGTTAAGAAGAGAG 59.192 45.833 18.92 0.00 0.00 3.20
5185 10211 4.711846 TGGCATGCTAGTTAAGAAGAGAGA 59.288 41.667 18.92 0.00 0.00 3.10
5186 10212 5.163468 TGGCATGCTAGTTAAGAAGAGAGAG 60.163 44.000 18.92 0.00 0.00 3.20
5187 10213 5.068460 GGCATGCTAGTTAAGAAGAGAGAGA 59.932 44.000 18.92 0.00 0.00 3.10
5188 10214 6.208644 GCATGCTAGTTAAGAAGAGAGAGAG 58.791 44.000 11.37 0.00 0.00 3.20
5189 10215 6.183360 GCATGCTAGTTAAGAAGAGAGAGAGT 60.183 42.308 11.37 0.00 0.00 3.24
5190 10216 7.012894 GCATGCTAGTTAAGAAGAGAGAGAGTA 59.987 40.741 11.37 0.00 0.00 2.59
5193 10219 8.760735 TGCTAGTTAAGAAGAGAGAGAGTAGTA 58.239 37.037 0.00 0.00 0.00 1.82
5194 10220 9.774413 GCTAGTTAAGAAGAGAGAGAGTAGTAT 57.226 37.037 0.00 0.00 0.00 2.12
5196 10222 8.974060 AGTTAAGAAGAGAGAGAGTAGTATGG 57.026 38.462 0.00 0.00 0.00 2.74
5197 10223 8.554011 AGTTAAGAAGAGAGAGAGTAGTATGGT 58.446 37.037 0.00 0.00 0.00 3.55
5198 10224 8.617809 GTTAAGAAGAGAGAGAGTAGTATGGTG 58.382 40.741 0.00 0.00 0.00 4.17
5200 10226 6.354130 AGAAGAGAGAGAGTAGTATGGTGAC 58.646 44.000 0.00 0.00 0.00 3.67
5202 10228 4.139038 GAGAGAGAGTAGTATGGTGACCC 58.861 52.174 0.00 0.00 0.00 4.46
5203 10229 3.117436 AGAGAGAGTAGTATGGTGACCCC 60.117 52.174 0.00 0.00 0.00 4.95
5204 10230 1.955080 GAGAGTAGTATGGTGACCCCG 59.045 57.143 0.00 0.00 35.15 5.73
5205 10231 1.038280 GAGTAGTATGGTGACCCCGG 58.962 60.000 0.00 0.00 35.15 5.73
5206 10232 0.398098 AGTAGTATGGTGACCCCGGG 60.398 60.000 15.80 15.80 35.15 5.73
5207 10233 0.397535 GTAGTATGGTGACCCCGGGA 60.398 60.000 26.32 0.00 35.15 5.14
5209 10235 0.981277 AGTATGGTGACCCCGGGAAG 60.981 60.000 26.32 9.05 35.15 3.46
5210 10236 0.979187 GTATGGTGACCCCGGGAAGA 60.979 60.000 26.32 0.52 35.15 2.87
5212 10238 1.137594 ATGGTGACCCCGGGAAGAAA 61.138 55.000 26.32 2.63 35.15 2.52
5213 10239 1.303074 GGTGACCCCGGGAAGAAAC 60.303 63.158 26.32 12.53 0.00 2.78
5214 10240 1.670083 GTGACCCCGGGAAGAAACG 60.670 63.158 26.32 5.39 0.00 3.60
5219 10245 2.032071 CCGGGAAGAAACGGTGCT 59.968 61.111 0.00 0.00 44.85 4.40
5222 10248 1.076332 CGGGAAGAAACGGTGCTAAG 58.924 55.000 0.00 0.00 0.00 2.18
5223 10249 1.607251 CGGGAAGAAACGGTGCTAAGT 60.607 52.381 0.00 0.00 0.00 2.24
5224 10250 2.353011 CGGGAAGAAACGGTGCTAAGTA 60.353 50.000 0.00 0.00 0.00 2.24
5226 10252 2.665052 GGAAGAAACGGTGCTAAGTACG 59.335 50.000 0.00 0.00 0.00 3.67
5227 10253 3.311966 GAAGAAACGGTGCTAAGTACGT 58.688 45.455 0.00 0.00 41.88 3.57
5228 10254 2.669364 AGAAACGGTGCTAAGTACGTG 58.331 47.619 0.00 0.00 39.76 4.49
5229 10255 2.035066 AGAAACGGTGCTAAGTACGTGT 59.965 45.455 0.00 0.00 39.76 4.49
5230 10256 3.253188 AGAAACGGTGCTAAGTACGTGTA 59.747 43.478 0.00 0.00 39.76 2.90
5231 10257 2.619013 ACGGTGCTAAGTACGTGTAC 57.381 50.000 0.00 1.90 38.24 2.90
5232 10258 1.200020 ACGGTGCTAAGTACGTGTACC 59.800 52.381 0.00 0.00 38.24 3.34
5233 10259 1.470098 CGGTGCTAAGTACGTGTACCT 59.530 52.381 16.00 0.00 36.75 3.08
5236 10262 3.065925 GGTGCTAAGTACGTGTACCTAGG 59.934 52.174 7.41 7.41 36.75 3.02
5238 10264 3.691118 TGCTAAGTACGTGTACCTAGGTG 59.309 47.826 25.33 10.11 36.75 4.00
5239 10265 3.065925 GCTAAGTACGTGTACCTAGGTGG 59.934 52.174 25.33 12.86 42.93 4.61
5240 10266 3.439857 AAGTACGTGTACCTAGGTGGA 57.560 47.619 25.33 7.67 39.71 4.02
5241 10267 2.996631 AGTACGTGTACCTAGGTGGAG 58.003 52.381 25.33 14.64 39.71 3.86
5242 10268 2.019984 GTACGTGTACCTAGGTGGAGG 58.980 57.143 25.33 17.01 42.89 4.30
5243 10269 0.969409 ACGTGTACCTAGGTGGAGGC 60.969 60.000 25.33 9.57 40.65 4.70
5244 10270 0.968901 CGTGTACCTAGGTGGAGGCA 60.969 60.000 25.33 11.93 40.65 4.75
5246 10272 0.115547 TGTACCTAGGTGGAGGCACA 59.884 55.000 25.33 16.24 40.03 4.57
5247 10273 1.272807 GTACCTAGGTGGAGGCACAA 58.727 55.000 25.33 0.00 40.65 3.33
5250 10276 1.282157 ACCTAGGTGGAGGCACAATTC 59.718 52.381 15.42 0.00 40.65 2.17
5251 10277 1.561542 CCTAGGTGGAGGCACAATTCT 59.438 52.381 0.00 0.00 38.35 2.40
5252 10278 2.636830 CTAGGTGGAGGCACAATTCTG 58.363 52.381 0.00 0.00 0.00 3.02
5253 10279 1.067295 AGGTGGAGGCACAATTCTGA 58.933 50.000 0.00 0.00 0.00 3.27
5254 10280 1.004044 AGGTGGAGGCACAATTCTGAG 59.996 52.381 0.00 0.00 0.00 3.35
5257 10283 1.980765 TGGAGGCACAATTCTGAGTCT 59.019 47.619 0.00 0.00 30.02 3.24
5258 10284 3.055819 GTGGAGGCACAATTCTGAGTCTA 60.056 47.826 0.00 0.00 27.23 2.59
5259 10285 3.055819 TGGAGGCACAATTCTGAGTCTAC 60.056 47.826 0.00 0.00 29.91 2.59
5260 10286 3.055819 GGAGGCACAATTCTGAGTCTACA 60.056 47.826 0.00 0.00 29.69 2.74
5261 10287 4.563580 GGAGGCACAATTCTGAGTCTACAA 60.564 45.833 0.00 0.00 29.69 2.41
5262 10288 4.319177 AGGCACAATTCTGAGTCTACAAC 58.681 43.478 0.00 0.00 0.00 3.32
5263 10289 4.065088 GGCACAATTCTGAGTCTACAACA 58.935 43.478 0.00 0.00 0.00 3.33
5264 10290 4.697352 GGCACAATTCTGAGTCTACAACAT 59.303 41.667 0.00 0.00 0.00 2.71
5265 10291 5.182001 GGCACAATTCTGAGTCTACAACATT 59.818 40.000 0.00 0.00 0.00 2.71
5266 10292 6.294176 GGCACAATTCTGAGTCTACAACATTT 60.294 38.462 0.00 0.00 0.00 2.32
5267 10293 6.580041 GCACAATTCTGAGTCTACAACATTTG 59.420 38.462 0.00 0.00 0.00 2.32
5269 10295 7.588854 CACAATTCTGAGTCTACAACATTTGTG 59.411 37.037 1.73 0.00 45.03 3.33
5270 10296 7.283127 ACAATTCTGAGTCTACAACATTTGTGT 59.717 33.333 1.73 0.00 45.03 3.72
5271 10297 7.807977 ATTCTGAGTCTACAACATTTGTGTT 57.192 32.000 1.73 0.00 45.03 3.32
5272 10298 8.902540 ATTCTGAGTCTACAACATTTGTGTTA 57.097 30.769 1.73 0.00 45.03 2.41
5274 10300 8.138365 TCTGAGTCTACAACATTTGTGTTAAC 57.862 34.615 0.00 0.00 45.03 2.01
5300 10342 2.047002 AGTACAAAAAGTGTGCGGGT 57.953 45.000 0.00 0.00 46.59 5.28
5305 10347 3.776340 ACAAAAAGTGTGCGGGTAAAAG 58.224 40.909 0.00 0.00 39.72 2.27
5345 10421 6.565247 GCAAAGCTTCATTTGTTTGGAGATTG 60.565 38.462 0.00 0.00 41.31 2.67
5347 10423 6.600882 AGCTTCATTTGTTTGGAGATTGAT 57.399 33.333 0.00 0.00 0.00 2.57
5389 10465 3.069443 ACGTTTGGGATGTTTCTGCAAAT 59.931 39.130 0.00 0.00 0.00 2.32
5390 10466 4.279671 ACGTTTGGGATGTTTCTGCAAATA 59.720 37.500 0.00 0.00 0.00 1.40
5436 10512 1.069049 GCCAACTGGAATGCAAACTGT 59.931 47.619 0.00 0.00 37.39 3.55
5451 10531 4.188462 CAAACTGTGTGGAGTACTCAACA 58.812 43.478 26.24 26.24 40.98 3.33
5462 10542 4.565652 GGAGTACTCAACATTGGACCACAT 60.566 45.833 23.91 0.00 0.00 3.21
5544 10656 2.943865 CGTCGTTTACTCGCATCAATG 58.056 47.619 0.00 0.00 0.00 2.82
5593 10710 1.962807 TGCAGCCAAATAACTTGCTGT 59.037 42.857 11.47 0.00 39.43 4.40
5594 10711 3.057596 GTGCAGCCAAATAACTTGCTGTA 60.058 43.478 11.47 4.75 39.43 2.74
5595 10712 3.763360 TGCAGCCAAATAACTTGCTGTAT 59.237 39.130 11.47 0.00 39.43 2.29
5596 10713 4.142403 TGCAGCCAAATAACTTGCTGTATC 60.142 41.667 11.47 0.00 39.43 2.24
5597 10714 4.734695 GCAGCCAAATAACTTGCTGTATCC 60.735 45.833 11.47 0.00 39.43 2.59
5598 10715 4.398988 CAGCCAAATAACTTGCTGTATCCA 59.601 41.667 0.00 0.00 35.85 3.41
5599 10716 5.068198 CAGCCAAATAACTTGCTGTATCCAT 59.932 40.000 0.00 0.00 35.85 3.41
5600 10717 6.262944 CAGCCAAATAACTTGCTGTATCCATA 59.737 38.462 0.00 0.00 35.85 2.74
5601 10718 6.263168 AGCCAAATAACTTGCTGTATCCATAC 59.737 38.462 0.00 0.00 33.27 2.39
5602 10719 6.263168 GCCAAATAACTTGCTGTATCCATACT 59.737 38.462 0.00 0.00 32.61 2.12
5603 10720 7.201821 GCCAAATAACTTGCTGTATCCATACTT 60.202 37.037 0.00 0.00 32.61 2.24
5604 10721 8.131100 CCAAATAACTTGCTGTATCCATACTTG 58.869 37.037 0.00 0.00 32.61 3.16
5605 10722 6.867662 ATAACTTGCTGTATCCATACTTGC 57.132 37.500 0.00 4.03 35.58 4.01
5611 10728 3.306364 GCTGTATCCATACTTGCGATCCT 60.306 47.826 0.00 0.00 34.41 3.24
5632 10755 6.220930 TCCTGTATCACCTTATTTATCACGC 58.779 40.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 271 3.383505 GGCCCAAAGGTATCACCAAATAC 59.616 47.826 0.00 0.00 41.95 1.89
266 283 1.459348 CCCAAACAGGCCCAAAGGT 60.459 57.895 0.00 0.00 35.39 3.50
324 347 6.043706 ACCAAATATGTGGAGGATCTTCTAGG 59.956 42.308 19.42 0.00 41.65 3.02
405 428 4.814294 CTTTCCGCCGCCGCTACT 62.814 66.667 0.00 0.00 0.00 2.57
449 472 1.531981 ATGAGAGGAGGAGGGGGTGT 61.532 60.000 0.00 0.00 0.00 4.16
451 474 0.933791 AGATGAGAGGAGGAGGGGGT 60.934 60.000 0.00 0.00 0.00 4.95
481 504 3.009714 AGAGGGGGAAAGACGGCC 61.010 66.667 0.00 0.00 0.00 6.13
482 505 1.990614 AGAGAGGGGGAAAGACGGC 60.991 63.158 0.00 0.00 0.00 5.68
485 508 1.219393 CGCAGAGAGGGGGAAAGAC 59.781 63.158 0.00 0.00 0.00 3.01
699 759 8.919145 ACCCAATTCTGTACAAAAATAAGAACA 58.081 29.630 0.00 0.00 30.17 3.18
700 760 9.406828 GACCCAATTCTGTACAAAAATAAGAAC 57.593 33.333 0.00 0.00 30.17 3.01
701 761 9.362151 AGACCCAATTCTGTACAAAAATAAGAA 57.638 29.630 0.00 0.00 0.00 2.52
702 762 8.934023 AGACCCAATTCTGTACAAAAATAAGA 57.066 30.769 0.00 0.00 0.00 2.10
703 763 9.014297 AGAGACCCAATTCTGTACAAAAATAAG 57.986 33.333 0.00 0.00 0.00 1.73
706 766 7.004086 TGAGAGACCCAATTCTGTACAAAAAT 58.996 34.615 0.00 0.00 0.00 1.82
712 772 4.872691 CACATGAGAGACCCAATTCTGTAC 59.127 45.833 0.00 0.00 0.00 2.90
714 774 3.584406 TCACATGAGAGACCCAATTCTGT 59.416 43.478 0.00 0.00 0.00 3.41
723 998 3.007398 ACTTGGAACTCACATGAGAGACC 59.993 47.826 24.57 23.30 44.74 3.85
746 1021 6.098124 TGTTGTTTGGAGGTTCAAGAAATGAT 59.902 34.615 0.00 0.00 38.03 2.45
750 1025 4.524714 TGTGTTGTTTGGAGGTTCAAGAAA 59.475 37.500 0.00 0.00 0.00 2.52
760 1035 6.506147 TGAATCTGAATTGTGTTGTTTGGAG 58.494 36.000 0.00 0.00 0.00 3.86
780 1063 7.398047 TCCCAGACATTGATCTTGAAATTGAAT 59.602 33.333 0.00 0.00 0.00 2.57
792 1083 8.512956 CAATATCAAATCTCCCAGACATTGATC 58.487 37.037 14.88 0.00 40.40 2.92
820 1111 1.673626 GGCCATGCAATTGAACTGGTG 60.674 52.381 10.34 0.00 0.00 4.17
825 1116 0.896923 TGAGGGCCATGCAATTGAAC 59.103 50.000 10.34 0.00 0.00 3.18
833 1124 2.309613 TGTTGATATTGAGGGCCATGC 58.690 47.619 6.18 0.00 0.00 4.06
855 1158 2.165845 GCTACTCTAAGGCTCCGTTTGA 59.834 50.000 0.00 0.00 0.00 2.69
875 1178 6.736243 GCCTCCTATATTCATATACGGAGTGC 60.736 46.154 18.91 17.76 45.73 4.40
876 1179 6.239064 GGCCTCCTATATTCATATACGGAGTG 60.239 46.154 18.91 14.81 45.73 3.51
882 1188 9.553064 CAGATTTGGCCTCCTATATTCATATAC 57.447 37.037 3.32 0.00 0.00 1.47
883 1189 9.506042 TCAGATTTGGCCTCCTATATTCATATA 57.494 33.333 3.32 0.00 0.00 0.86
886 1192 6.708885 TCAGATTTGGCCTCCTATATTCAT 57.291 37.500 3.32 0.00 0.00 2.57
887 1193 6.273026 TCATCAGATTTGGCCTCCTATATTCA 59.727 38.462 3.32 0.00 0.00 2.57
906 1212 4.892433 AGAAAGTCCAACTCACTCATCAG 58.108 43.478 0.00 0.00 0.00 2.90
909 1215 4.590647 TGAGAGAAAGTCCAACTCACTCAT 59.409 41.667 12.52 3.03 34.84 2.90
940 1246 1.067364 CCTGCATGAACAGTTTGCACA 59.933 47.619 8.34 0.00 41.18 4.57
948 1254 1.654954 GCTCAGCCCTGCATGAACAG 61.655 60.000 0.00 0.00 37.42 3.16
962 1268 4.034163 CAGATCACTGTTGCTTATGCTCAG 59.966 45.833 17.55 17.55 42.47 3.35
1201 1537 7.486647 AGATAAATGCAGAAATGTCATTGGAC 58.513 34.615 0.00 0.00 44.57 4.02
1225 1596 7.334421 TCAGCAGGTTTAAGATAGCAGTTAAAG 59.666 37.037 0.00 0.00 30.62 1.85
1238 1609 1.838112 TGCCCATCAGCAGGTTTAAG 58.162 50.000 0.00 0.00 38.00 1.85
1281 1652 6.507023 AGTAATTTGCTCAAGAACAAACAGG 58.493 36.000 1.18 0.00 38.50 4.00
1469 1849 3.577848 TGCCATGGTAGCAAGAAAATGTT 59.422 39.130 14.67 0.00 37.28 2.71
1509 1890 5.772825 TCTCTTTTTGTTGGAACCAGATG 57.227 39.130 0.00 0.00 0.00 2.90
1561 1942 2.468915 AGGTCTACCTTAGCACCCTTC 58.531 52.381 0.00 0.00 46.09 3.46
1677 2058 7.939782 TGAGAATTTCTACAGATGCAAAACAA 58.060 30.769 0.00 0.00 0.00 2.83
1701 2112 9.784531 ATACAGTATATTTTGATGTCCCTCTTG 57.215 33.333 0.00 0.00 0.00 3.02
1916 2616 8.029522 GGTAATGAGATGGAAGAAAAAGGAAAC 58.970 37.037 0.00 0.00 0.00 2.78
2241 2948 4.384647 GCATCTTCTCCCCAAGATTACAGT 60.385 45.833 0.00 0.00 40.52 3.55
2374 3083 2.697229 CTGAGATGGGAGATACACTGCA 59.303 50.000 0.00 0.00 38.74 4.41
2442 3205 3.523564 ACAGAGGGGAGCTTGCTAAAATA 59.476 43.478 0.00 0.00 0.00 1.40
2621 3780 5.277586 CGTGTTACAAGCACAAATTGACCTA 60.278 40.000 0.00 0.00 36.71 3.08
2681 3841 9.931698 TCAGGAAGACTTAGTTATGGTCTATTA 57.068 33.333 0.00 0.00 39.09 0.98
2686 3846 8.475639 TGTATTCAGGAAGACTTAGTTATGGTC 58.524 37.037 8.11 0.00 33.95 4.02
2736 4355 7.826744 GTCCAGAGTATTCCTTTGAAAAGAGAT 59.173 37.037 4.34 1.36 38.28 2.75
2739 4358 7.016661 AGAGTCCAGAGTATTCCTTTGAAAAGA 59.983 37.037 4.34 0.00 38.28 2.52
2751 4370 6.155221 TCATTAAGTGCAGAGTCCAGAGTATT 59.845 38.462 0.00 0.00 0.00 1.89
2950 7148 9.213777 AGGATCACTCAAGAGTATAACCAATTA 57.786 33.333 1.86 0.00 40.20 1.40
2990 7188 9.642327 CAAATCACATGAACCATCATAAGAAAA 57.358 29.630 0.00 0.00 44.53 2.29
3100 7298 9.072375 TGTATCAACCATAAAAGAATGTGTCAA 57.928 29.630 0.00 0.00 0.00 3.18
3111 7309 9.703892 CCACAAAAGAATGTATCAACCATAAAA 57.296 29.630 0.00 0.00 30.84 1.52
3112 7310 8.865090 ACCACAAAAGAATGTATCAACCATAAA 58.135 29.630 0.00 0.00 30.84 1.40
3113 7311 8.415950 ACCACAAAAGAATGTATCAACCATAA 57.584 30.769 0.00 0.00 30.84 1.90
3114 7312 7.148323 CGACCACAAAAGAATGTATCAACCATA 60.148 37.037 0.00 0.00 30.84 2.74
3115 7313 6.349280 CGACCACAAAAGAATGTATCAACCAT 60.349 38.462 0.00 0.00 30.84 3.55
3116 7314 5.049060 CGACCACAAAAGAATGTATCAACCA 60.049 40.000 0.00 0.00 30.84 3.67
3117 7315 5.390613 CGACCACAAAAGAATGTATCAACC 58.609 41.667 0.00 0.00 30.84 3.77
3118 7316 5.048991 ACCGACCACAAAAGAATGTATCAAC 60.049 40.000 0.00 0.00 30.84 3.18
3119 7317 5.067273 ACCGACCACAAAAGAATGTATCAA 58.933 37.500 0.00 0.00 30.84 2.57
3120 7318 4.647611 ACCGACCACAAAAGAATGTATCA 58.352 39.130 0.00 0.00 30.84 2.15
3121 7319 5.622770 AACCGACCACAAAAGAATGTATC 57.377 39.130 0.00 0.00 30.84 2.24
3122 7320 6.938030 TCTAAACCGACCACAAAAGAATGTAT 59.062 34.615 0.00 0.00 30.84 2.29
3123 7321 6.289834 TCTAAACCGACCACAAAAGAATGTA 58.710 36.000 0.00 0.00 30.84 2.29
3204 7462 2.113243 AACTGCAGGGGGTCTTCGAC 62.113 60.000 19.93 0.00 0.00 4.20
3366 8301 6.268158 TCATATATTTTGGCACGGAGGTAGTA 59.732 38.462 0.00 0.00 0.00 1.82
3367 8302 3.926058 ATATTTTGGCACGGAGGTAGT 57.074 42.857 0.00 0.00 0.00 2.73
3368 8303 5.408604 GTCATATATTTTGGCACGGAGGTAG 59.591 44.000 0.00 0.00 0.00 3.18
3369 8304 5.163290 TGTCATATATTTTGGCACGGAGGTA 60.163 40.000 0.00 0.00 0.00 3.08
3370 8305 4.134563 GTCATATATTTTGGCACGGAGGT 58.865 43.478 0.00 0.00 0.00 3.85
3371 8306 4.133820 TGTCATATATTTTGGCACGGAGG 58.866 43.478 0.00 0.00 0.00 4.30
3372 8307 5.947228 ATGTCATATATTTTGGCACGGAG 57.053 39.130 0.00 0.00 30.31 4.63
3373 8308 6.707440 AAATGTCATATATTTTGGCACGGA 57.293 33.333 0.00 0.00 30.31 4.69
3374 8309 7.164226 CAAAATGTCATATATTTTGGCACGG 57.836 36.000 11.80 0.00 45.19 4.94
3386 8321 9.561069 CTAGTTTAGCCTACCAAAATGTCATAT 57.439 33.333 0.00 0.00 0.00 1.78
3387 8322 7.497909 GCTAGTTTAGCCTACCAAAATGTCATA 59.502 37.037 0.00 0.00 45.95 2.15
3388 8323 6.318900 GCTAGTTTAGCCTACCAAAATGTCAT 59.681 38.462 0.00 0.00 45.95 3.06
3389 8324 5.646360 GCTAGTTTAGCCTACCAAAATGTCA 59.354 40.000 0.00 0.00 45.95 3.58
3390 8325 6.120378 GCTAGTTTAGCCTACCAAAATGTC 57.880 41.667 0.00 0.00 45.95 3.06
3412 8347 9.166126 GCCAAAATATATGACGTTTTAGTAAGC 57.834 33.333 0.00 0.00 0.00 3.09
3416 8351 8.134895 CCATGCCAAAATATATGACGTTTTAGT 58.865 33.333 0.00 0.00 0.00 2.24
3417 8352 8.349245 TCCATGCCAAAATATATGACGTTTTAG 58.651 33.333 0.00 0.00 0.00 1.85
3418 8353 8.226819 TCCATGCCAAAATATATGACGTTTTA 57.773 30.769 0.00 0.00 0.00 1.52
3419 8354 7.106439 TCCATGCCAAAATATATGACGTTTT 57.894 32.000 0.00 0.00 0.00 2.43
3420 8355 6.239008 CCTCCATGCCAAAATATATGACGTTT 60.239 38.462 0.00 0.00 0.00 3.60
3421 8356 5.241506 CCTCCATGCCAAAATATATGACGTT 59.758 40.000 0.00 0.00 0.00 3.99
3422 8357 4.761739 CCTCCATGCCAAAATATATGACGT 59.238 41.667 0.00 0.00 0.00 4.34
3423 8358 4.761739 ACCTCCATGCCAAAATATATGACG 59.238 41.667 0.00 0.00 0.00 4.35
3424 8359 6.942576 ACTACCTCCATGCCAAAATATATGAC 59.057 38.462 0.00 0.00 0.00 3.06
3425 8360 7.090319 ACTACCTCCATGCCAAAATATATGA 57.910 36.000 0.00 0.00 0.00 2.15
3426 8361 7.882791 TGTACTACCTCCATGCCAAAATATATG 59.117 37.037 0.00 0.00 0.00 1.78
3427 8362 7.984475 TGTACTACCTCCATGCCAAAATATAT 58.016 34.615 0.00 0.00 0.00 0.86
3428 8363 7.381789 TGTACTACCTCCATGCCAAAATATA 57.618 36.000 0.00 0.00 0.00 0.86
3429 8364 6.260700 TGTACTACCTCCATGCCAAAATAT 57.739 37.500 0.00 0.00 0.00 1.28
3430 8365 5.702065 TGTACTACCTCCATGCCAAAATA 57.298 39.130 0.00 0.00 0.00 1.40
3431 8366 4.584638 TGTACTACCTCCATGCCAAAAT 57.415 40.909 0.00 0.00 0.00 1.82
3432 8367 4.584638 ATGTACTACCTCCATGCCAAAA 57.415 40.909 0.00 0.00 0.00 2.44
3433 8368 4.584638 AATGTACTACCTCCATGCCAAA 57.415 40.909 0.00 0.00 0.00 3.28
3434 8369 4.018870 TGAAATGTACTACCTCCATGCCAA 60.019 41.667 0.00 0.00 0.00 4.52
3435 8370 3.521531 TGAAATGTACTACCTCCATGCCA 59.478 43.478 0.00 0.00 0.00 4.92
3436 8371 3.877508 GTGAAATGTACTACCTCCATGCC 59.122 47.826 0.00 0.00 0.00 4.40
3437 8372 4.572389 CAGTGAAATGTACTACCTCCATGC 59.428 45.833 0.00 0.00 0.00 4.06
3438 8373 5.734720 ACAGTGAAATGTACTACCTCCATG 58.265 41.667 0.00 0.00 0.00 3.66
3439 8374 7.344612 TGATACAGTGAAATGTACTACCTCCAT 59.655 37.037 0.00 0.00 38.43 3.41
3440 8375 6.666113 TGATACAGTGAAATGTACTACCTCCA 59.334 38.462 0.00 0.00 38.43 3.86
3441 8376 7.108841 TGATACAGTGAAATGTACTACCTCC 57.891 40.000 0.00 0.00 38.43 4.30
3442 8377 9.601217 AAATGATACAGTGAAATGTACTACCTC 57.399 33.333 0.00 0.00 38.43 3.85
3443 8378 9.959721 AAAATGATACAGTGAAATGTACTACCT 57.040 29.630 0.00 0.00 38.43 3.08
3539 8479 9.998106 TCTAGTCCATACTAATAAATGGCTTTC 57.002 33.333 0.00 0.00 42.08 2.62
3594 8534 9.049050 TCCCACTCTATTTACACCACTTATTAA 57.951 33.333 0.00 0.00 0.00 1.40
3608 8548 9.110502 GTTAAAGATCGAATTCCCACTCTATTT 57.889 33.333 0.00 0.00 0.00 1.40
3616 8556 3.267291 TGGGGTTAAAGATCGAATTCCCA 59.733 43.478 16.03 13.30 39.35 4.37
3653 8593 9.779237 CATTACGATGTAAGAACGAATTATCAC 57.221 33.333 0.00 0.00 0.00 3.06
3699 8639 3.006752 AGGGCAAAAGATCAAATGCGAAA 59.993 39.130 9.56 0.00 39.66 3.46
3702 8642 2.165030 AGAGGGCAAAAGATCAAATGCG 59.835 45.455 9.56 0.00 39.66 4.73
3735 8675 3.701542 CCTAGTTCACTGCTGAGTATGGA 59.298 47.826 0.00 0.00 0.00 3.41
3739 8679 4.035612 ACTCCTAGTTCACTGCTGAGTA 57.964 45.455 0.00 0.00 31.94 2.59
3763 8703 7.177216 TCTGATATGCAAAAATGTTCTCCAGTT 59.823 33.333 0.00 0.00 31.49 3.16
3778 8718 7.423199 GCTGAATTCTCAAATCTGATATGCAA 58.577 34.615 7.05 0.00 0.00 4.08
3782 8722 6.850234 AGGGCTGAATTCTCAAATCTGATAT 58.150 36.000 7.05 0.00 0.00 1.63
3793 8733 2.806382 GCTGCTAGAGGGCTGAATTCTC 60.806 54.545 7.05 0.00 33.89 2.87
3840 8780 2.379972 ACATTCTCCAGTCCTACTCCG 58.620 52.381 0.00 0.00 0.00 4.63
3858 8798 4.518590 TCTGAAATCTGAAATGCGGAAACA 59.481 37.500 0.00 0.00 35.03 2.83
3859 8799 5.046910 TCTGAAATCTGAAATGCGGAAAC 57.953 39.130 0.00 0.00 35.03 2.78
3864 8805 5.084722 GTCTGTTCTGAAATCTGAAATGCG 58.915 41.667 4.57 0.00 35.96 4.73
3932 8880 5.179368 ACAGCATTAAATATCGATGGAACCG 59.821 40.000 8.54 0.00 0.00 4.44
3975 8923 0.173481 TTCTCAGCCGGACATCTTCG 59.827 55.000 5.05 0.00 0.00 3.79
4032 8980 4.458256 TGCACCATATCTCATCCCAATT 57.542 40.909 0.00 0.00 0.00 2.32
4088 9037 1.153168 CATTCGCCCCTGTTCGGAT 60.153 57.895 0.00 0.00 33.16 4.18
4195 9145 4.023536 GGCAGTCGTGATTCAACCTAAAAA 60.024 41.667 0.00 0.00 0.00 1.94
4199 9149 1.403647 CGGCAGTCGTGATTCAACCTA 60.404 52.381 0.00 0.00 0.00 3.08
4635 9611 2.582498 CGAAGGATCGTCGGGCAC 60.582 66.667 9.04 0.00 44.06 5.01
4761 9746 1.338020 TGGATGTCTGATCACGGATCG 59.662 52.381 0.00 5.10 41.51 3.69
4820 9805 1.961394 ACAAGAGTTGCCGTCAGAGTA 59.039 47.619 0.00 0.00 0.00 2.59
4829 9816 4.870363 TGCATCTAAAAACAAGAGTTGCC 58.130 39.130 0.00 0.00 38.17 4.52
4830 9817 6.385033 AGATGCATCTAAAAACAAGAGTTGC 58.615 36.000 27.73 0.00 34.98 4.17
4851 9838 3.152341 CCTGGAAAGTTGCAGTCAAGAT 58.848 45.455 11.06 0.00 44.06 2.40
4853 9840 2.551459 CTCCTGGAAAGTTGCAGTCAAG 59.449 50.000 11.06 3.10 44.06 3.02
4869 9857 3.643159 GGTAACAAGCAAAACCTCCTG 57.357 47.619 0.00 0.00 0.00 3.86
4985 10011 9.303116 CTTTTCCTATCCTCTAGCTTATCTACA 57.697 37.037 0.00 0.00 0.00 2.74
5049 10075 4.158786 TGACCATTTCACCACCAAATGAT 58.841 39.130 6.70 0.00 41.81 2.45
5050 10076 3.570540 TGACCATTTCACCACCAAATGA 58.429 40.909 6.70 0.00 41.81 2.57
5067 10093 3.686726 CCTAACTGACAATGAAGCTGACC 59.313 47.826 0.00 0.00 0.00 4.02
5078 10104 5.364735 GGGCCTAAGTATACCTAACTGACAA 59.635 44.000 0.84 0.00 0.00 3.18
5082 10108 4.490706 AGGGGCCTAAGTATACCTAACTG 58.509 47.826 0.84 0.00 0.00 3.16
5093 10119 1.937924 GCATTGGGAGGGGCCTAAGT 61.938 60.000 0.84 0.00 40.79 2.24
5094 10120 1.152673 GCATTGGGAGGGGCCTAAG 60.153 63.158 0.84 0.00 40.79 2.18
5095 10121 1.622442 AGCATTGGGAGGGGCCTAA 60.622 57.895 0.84 0.00 41.78 2.69
5097 10123 3.424105 GAGCATTGGGAGGGGCCT 61.424 66.667 0.84 0.00 36.66 5.19
5098 10124 4.529731 GGAGCATTGGGAGGGGCC 62.530 72.222 0.00 0.00 0.00 5.80
5099 10125 3.743017 TGGAGCATTGGGAGGGGC 61.743 66.667 0.00 0.00 0.00 5.80
5100 10126 2.276740 GTGGAGCATTGGGAGGGG 59.723 66.667 0.00 0.00 0.00 4.79
5101 10127 1.867595 AAGGTGGAGCATTGGGAGGG 61.868 60.000 0.00 0.00 0.00 4.30
5102 10128 0.682209 CAAGGTGGAGCATTGGGAGG 60.682 60.000 0.00 0.00 35.45 4.30
5103 10129 0.038744 ACAAGGTGGAGCATTGGGAG 59.961 55.000 0.00 0.00 42.57 4.30
5105 10131 1.271871 TGTACAAGGTGGAGCATTGGG 60.272 52.381 0.00 0.00 42.57 4.12
5107 10133 2.086869 CCTGTACAAGGTGGAGCATTG 58.913 52.381 0.00 0.00 43.74 2.82
5108 10134 2.496899 CCTGTACAAGGTGGAGCATT 57.503 50.000 0.00 0.00 41.74 3.56
5118 10144 2.146342 CAACCTCAGCACCTGTACAAG 58.854 52.381 0.00 0.00 32.61 3.16
5119 10145 1.813862 GCAACCTCAGCACCTGTACAA 60.814 52.381 0.00 0.00 32.61 2.41
5120 10146 0.250295 GCAACCTCAGCACCTGTACA 60.250 55.000 0.00 0.00 32.61 2.90
5121 10147 0.955919 GGCAACCTCAGCACCTGTAC 60.956 60.000 0.00 0.00 32.61 2.90
5122 10148 1.374947 GGCAACCTCAGCACCTGTA 59.625 57.895 0.00 0.00 32.61 2.74
5124 10150 1.529010 TTGGCAACCTCAGCACCTG 60.529 57.895 0.00 0.00 0.00 4.00
5126 10152 0.250727 TAGTTGGCAACCTCAGCACC 60.251 55.000 25.81 0.00 0.00 5.01
5129 10155 0.523519 GCTTAGTTGGCAACCTCAGC 59.476 55.000 25.81 23.93 0.00 4.26
5131 10157 2.356665 TTGCTTAGTTGGCAACCTCA 57.643 45.000 25.81 15.32 43.50 3.86
5137 10163 3.951037 TCAGACTTTTTGCTTAGTTGGCA 59.049 39.130 0.00 0.00 37.97 4.92
5140 10166 5.916883 CCACATCAGACTTTTTGCTTAGTTG 59.083 40.000 0.00 0.00 0.00 3.16
5141 10167 5.507985 GCCACATCAGACTTTTTGCTTAGTT 60.508 40.000 0.00 0.00 0.00 2.24
5142 10168 4.022849 GCCACATCAGACTTTTTGCTTAGT 60.023 41.667 0.00 0.00 0.00 2.24
5143 10169 4.022935 TGCCACATCAGACTTTTTGCTTAG 60.023 41.667 0.00 0.00 0.00 2.18
5145 10171 2.694628 TGCCACATCAGACTTTTTGCTT 59.305 40.909 0.00 0.00 0.00 3.91
5146 10172 2.309613 TGCCACATCAGACTTTTTGCT 58.690 42.857 0.00 0.00 0.00 3.91
5147 10173 2.798976 TGCCACATCAGACTTTTTGC 57.201 45.000 0.00 0.00 0.00 3.68
5148 10174 2.991190 GCATGCCACATCAGACTTTTTG 59.009 45.455 6.36 0.00 0.00 2.44
5149 10175 2.895404 AGCATGCCACATCAGACTTTTT 59.105 40.909 15.66 0.00 0.00 1.94
5150 10176 2.522185 AGCATGCCACATCAGACTTTT 58.478 42.857 15.66 0.00 0.00 2.27
5152 10178 2.238144 ACTAGCATGCCACATCAGACTT 59.762 45.455 15.66 0.00 0.00 3.01
5154 10180 2.322355 ACTAGCATGCCACATCAGAC 57.678 50.000 15.66 0.00 0.00 3.51
5157 10183 4.486125 TCTTAACTAGCATGCCACATCA 57.514 40.909 15.66 0.00 0.00 3.07
5160 10186 4.222810 TCTCTTCTTAACTAGCATGCCACA 59.777 41.667 15.66 0.00 0.00 4.17
5162 10188 4.711846 TCTCTCTTCTTAACTAGCATGCCA 59.288 41.667 15.66 0.00 0.00 4.92
5163 10189 5.068460 TCTCTCTCTTCTTAACTAGCATGCC 59.932 44.000 15.66 0.00 0.00 4.40
5164 10190 6.142818 TCTCTCTCTTCTTAACTAGCATGC 57.857 41.667 10.51 10.51 0.00 4.06
5165 10191 7.333528 ACTCTCTCTCTTCTTAACTAGCATG 57.666 40.000 0.00 0.00 0.00 4.06
5166 10192 8.272173 ACTACTCTCTCTCTTCTTAACTAGCAT 58.728 37.037 0.00 0.00 0.00 3.79
5167 10193 7.626390 ACTACTCTCTCTCTTCTTAACTAGCA 58.374 38.462 0.00 0.00 0.00 3.49
5168 10194 9.774413 ATACTACTCTCTCTCTTCTTAACTAGC 57.226 37.037 0.00 0.00 0.00 3.42
5172 10198 8.617809 CACCATACTACTCTCTCTCTTCTTAAC 58.382 40.741 0.00 0.00 0.00 2.01
5173 10199 8.549731 TCACCATACTACTCTCTCTCTTCTTAA 58.450 37.037 0.00 0.00 0.00 1.85
5174 10200 7.988599 GTCACCATACTACTCTCTCTCTTCTTA 59.011 40.741 0.00 0.00 0.00 2.10
5175 10201 6.826741 GTCACCATACTACTCTCTCTCTTCTT 59.173 42.308 0.00 0.00 0.00 2.52
5177 10203 5.529800 GGTCACCATACTACTCTCTCTCTTC 59.470 48.000 0.00 0.00 0.00 2.87
5179 10205 4.141344 GGGTCACCATACTACTCTCTCTCT 60.141 50.000 0.00 0.00 36.50 3.10
5181 10207 3.117436 GGGGTCACCATACTACTCTCTCT 60.117 52.174 0.00 0.00 39.85 3.10
5182 10208 3.224269 GGGGTCACCATACTACTCTCTC 58.776 54.545 0.00 0.00 39.85 3.20
5183 10209 2.423088 CGGGGTCACCATACTACTCTCT 60.423 54.545 0.00 0.00 40.22 3.10
5184 10210 1.955080 CGGGGTCACCATACTACTCTC 59.045 57.143 0.00 0.00 40.22 3.20
5185 10211 1.411216 CCGGGGTCACCATACTACTCT 60.411 57.143 0.00 0.00 40.22 3.24
5186 10212 1.038280 CCGGGGTCACCATACTACTC 58.962 60.000 0.00 0.00 40.22 2.59
5187 10213 0.398098 CCCGGGGTCACCATACTACT 60.398 60.000 14.71 0.00 40.22 2.57
5188 10214 0.397535 TCCCGGGGTCACCATACTAC 60.398 60.000 23.50 0.00 40.22 2.73
5189 10215 0.339162 TTCCCGGGGTCACCATACTA 59.661 55.000 23.50 0.00 40.22 1.82
5190 10216 0.981277 CTTCCCGGGGTCACCATACT 60.981 60.000 23.50 0.00 40.22 2.12
5193 10219 1.137594 TTTCTTCCCGGGGTCACCAT 61.138 55.000 23.50 0.00 40.22 3.55
5194 10220 1.770927 TTTCTTCCCGGGGTCACCA 60.771 57.895 23.50 0.00 40.22 4.17
5195 10221 1.303074 GTTTCTTCCCGGGGTCACC 60.303 63.158 23.50 0.40 0.00 4.02
5196 10222 1.670083 CGTTTCTTCCCGGGGTCAC 60.670 63.158 23.50 9.78 0.00 3.67
5197 10223 2.745037 CGTTTCTTCCCGGGGTCA 59.255 61.111 23.50 3.93 0.00 4.02
5198 10224 2.046604 CCGTTTCTTCCCGGGGTC 60.047 66.667 23.50 4.11 40.54 4.46
5203 10229 1.076332 CTTAGCACCGTTTCTTCCCG 58.924 55.000 0.00 0.00 0.00 5.14
5204 10230 2.180432 ACTTAGCACCGTTTCTTCCC 57.820 50.000 0.00 0.00 0.00 3.97
5205 10231 2.665052 CGTACTTAGCACCGTTTCTTCC 59.335 50.000 0.00 0.00 0.00 3.46
5206 10232 3.120782 CACGTACTTAGCACCGTTTCTTC 59.879 47.826 0.00 0.00 0.00 2.87
5207 10233 3.054878 CACGTACTTAGCACCGTTTCTT 58.945 45.455 0.00 0.00 0.00 2.52
5209 10235 2.397549 ACACGTACTTAGCACCGTTTC 58.602 47.619 0.00 0.00 0.00 2.78
5210 10236 2.514205 ACACGTACTTAGCACCGTTT 57.486 45.000 0.00 0.00 0.00 3.60
5212 10238 1.200020 GGTACACGTACTTAGCACCGT 59.800 52.381 7.25 0.00 36.36 4.83
5213 10239 1.470098 AGGTACACGTACTTAGCACCG 59.530 52.381 7.25 0.00 36.36 4.94
5214 10240 3.065925 CCTAGGTACACGTACTTAGCACC 59.934 52.174 16.88 0.00 41.56 5.01
5215 10241 3.691609 ACCTAGGTACACGTACTTAGCAC 59.308 47.826 14.41 0.00 41.56 4.40
5216 10242 3.691118 CACCTAGGTACACGTACTTAGCA 59.309 47.826 15.80 0.00 41.56 3.49
5217 10243 3.065925 CCACCTAGGTACACGTACTTAGC 59.934 52.174 15.80 0.00 41.56 3.09
5218 10244 4.517285 TCCACCTAGGTACACGTACTTAG 58.483 47.826 15.80 15.84 42.15 2.18
5219 10245 4.517285 CTCCACCTAGGTACACGTACTTA 58.483 47.826 15.80 3.52 39.02 2.24
5222 10248 2.019984 CCTCCACCTAGGTACACGTAC 58.980 57.143 15.80 0.00 39.02 3.67
5223 10249 1.683011 GCCTCCACCTAGGTACACGTA 60.683 57.143 15.80 0.00 39.02 3.57
5224 10250 0.969409 GCCTCCACCTAGGTACACGT 60.969 60.000 15.80 0.00 39.02 4.49
5226 10252 2.986492 TGCCTCCACCTAGGTACAC 58.014 57.895 15.80 3.40 39.02 2.90
5229 10255 2.263895 ATTGTGCCTCCACCTAGGTA 57.736 50.000 15.80 0.00 41.35 3.08
5230 10256 1.282157 GAATTGTGCCTCCACCTAGGT 59.718 52.381 9.21 9.21 41.35 3.08
5231 10257 1.561542 AGAATTGTGCCTCCACCTAGG 59.438 52.381 7.41 7.41 41.35 3.02
5232 10258 2.237143 TCAGAATTGTGCCTCCACCTAG 59.763 50.000 0.00 0.00 41.35 3.02
5233 10259 2.237143 CTCAGAATTGTGCCTCCACCTA 59.763 50.000 0.00 0.00 41.35 3.08
5236 10262 2.079925 GACTCAGAATTGTGCCTCCAC 58.920 52.381 0.00 0.00 42.40 4.02
5238 10264 2.777832 AGACTCAGAATTGTGCCTCC 57.222 50.000 0.00 0.00 0.00 4.30
5239 10265 4.193826 TGTAGACTCAGAATTGTGCCTC 57.806 45.455 0.00 0.00 0.00 4.70
5240 10266 4.202357 TGTTGTAGACTCAGAATTGTGCCT 60.202 41.667 0.00 0.00 0.00 4.75
5241 10267 4.065088 TGTTGTAGACTCAGAATTGTGCC 58.935 43.478 0.00 0.00 0.00 5.01
5242 10268 5.869753 ATGTTGTAGACTCAGAATTGTGC 57.130 39.130 0.00 0.00 0.00 4.57
5243 10269 7.588854 CACAAATGTTGTAGACTCAGAATTGTG 59.411 37.037 0.00 0.00 43.23 3.33
5244 10270 7.283127 ACACAAATGTTGTAGACTCAGAATTGT 59.717 33.333 0.00 0.00 43.23 2.71
5246 10272 7.807977 ACACAAATGTTGTAGACTCAGAATT 57.192 32.000 0.00 0.00 43.23 2.17
5271 10297 9.011407 CGCACACTTTTTGTACTTTTAATGTTA 57.989 29.630 0.00 0.00 35.67 2.41
5272 10298 7.009723 CCGCACACTTTTTGTACTTTTAATGTT 59.990 33.333 0.00 0.00 35.67 2.71
5274 10300 6.074569 CCCGCACACTTTTTGTACTTTTAATG 60.075 38.462 0.00 0.00 35.67 1.90
5296 10338 4.628074 TCAGAGTTCAGAACTTTTACCCG 58.372 43.478 17.19 0.05 43.03 5.28
5300 10342 7.566760 TTTGCATCAGAGTTCAGAACTTTTA 57.433 32.000 17.19 3.77 43.03 1.52
5305 10347 3.501445 AGCTTTGCATCAGAGTTCAGAAC 59.499 43.478 5.00 5.00 0.00 3.01
5345 10421 5.452302 CGTAATTGCAGAAACATCCGAAATC 59.548 40.000 0.00 0.00 0.00 2.17
5347 10423 4.214545 ACGTAATTGCAGAAACATCCGAAA 59.785 37.500 0.00 0.00 0.00 3.46
5436 10512 3.244422 GGTCCAATGTTGAGTACTCCACA 60.244 47.826 26.64 26.64 39.17 4.17
5451 10531 1.449601 GTCGCCGATGTGGTCCAAT 60.450 57.895 0.00 0.00 41.21 3.16
5462 10542 2.754658 GGAGAAGAGGGTCGCCGA 60.755 66.667 0.00 0.00 0.00 5.54
5537 10649 6.596888 ACAAGTCTGTAACTGATCCATTGATG 59.403 38.462 0.00 0.00 38.58 3.07
5544 10656 6.026947 ACTGTACAAGTCTGTAACTGATCC 57.973 41.667 0.00 0.00 39.75 3.36
5593 10710 5.714806 TGATACAGGATCGCAAGTATGGATA 59.285 40.000 0.00 0.00 37.38 2.59
5594 10711 4.528206 TGATACAGGATCGCAAGTATGGAT 59.472 41.667 0.00 0.00 37.38 3.41
5595 10712 3.895041 TGATACAGGATCGCAAGTATGGA 59.105 43.478 0.00 0.00 37.38 3.41
5596 10713 3.990469 GTGATACAGGATCGCAAGTATGG 59.010 47.826 0.78 0.00 43.47 2.74
5597 10714 3.990469 GGTGATACAGGATCGCAAGTATG 59.010 47.826 8.51 0.00 45.44 2.39
5598 10715 3.898123 AGGTGATACAGGATCGCAAGTAT 59.102 43.478 8.51 0.00 45.44 2.12
5599 10716 3.296854 AGGTGATACAGGATCGCAAGTA 58.703 45.455 8.51 0.00 45.44 2.24
5600 10717 2.111384 AGGTGATACAGGATCGCAAGT 58.889 47.619 8.51 0.00 45.44 3.16
5601 10718 2.898729 AGGTGATACAGGATCGCAAG 57.101 50.000 8.51 0.00 45.44 4.01
5602 10719 4.955811 ATAAGGTGATACAGGATCGCAA 57.044 40.909 8.51 0.00 45.44 4.85
5603 10720 4.955811 AATAAGGTGATACAGGATCGCA 57.044 40.909 8.51 0.00 45.44 5.10
5604 10721 7.063544 GTGATAAATAAGGTGATACAGGATCGC 59.936 40.741 0.00 0.00 43.29 4.58
5605 10722 7.273598 CGTGATAAATAAGGTGATACAGGATCG 59.726 40.741 0.00 0.00 37.38 3.69
5611 10728 7.851387 TTTGCGTGATAAATAAGGTGATACA 57.149 32.000 0.00 0.00 0.00 2.29
5632 10755 2.288152 ACTTGGGCGTGCTGTTTATTTG 60.288 45.455 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.