Multiple sequence alignment - TraesCS1D01G350100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G350100 chr1D 100.000 3437 0 0 1 3437 436088242 436084806 0.000000e+00 6348.0
1 TraesCS1D01G350100 chr1D 88.315 1472 150 18 1022 2487 436098637 436097182 0.000000e+00 1746.0
2 TraesCS1D01G350100 chr1D 76.421 1302 260 35 1055 2328 436082114 436083396 0.000000e+00 660.0
3 TraesCS1D01G350100 chr1D 100.000 78 0 0 1 78 436127873 436127796 9.940000e-31 145.0
4 TraesCS1D01G350100 chr1D 100.000 78 0 0 1 78 492470508 492470431 9.940000e-31 145.0
5 TraesCS1D01G350100 chr1A 94.032 2262 110 14 986 3231 533258545 533256293 0.000000e+00 3406.0
6 TraesCS1D01G350100 chr1A 75.780 1379 287 37 1055 2405 533253051 533254410 0.000000e+00 652.0
7 TraesCS1D01G350100 chr1A 94.245 139 8 0 1020 1158 533279064 533278926 2.690000e-51 213.0
8 TraesCS1D01G350100 chr1A 83.402 241 19 12 674 899 533258814 533258580 1.620000e-48 204.0
9 TraesCS1D01G350100 chr1A 89.899 99 5 3 3296 3390 533256271 533256174 4.660000e-24 122.0
10 TraesCS1D01G350100 chr1A 88.462 78 7 2 497 574 533261196 533261121 3.650000e-15 93.5
11 TraesCS1D01G350100 chr1B 88.211 2460 159 68 696 3092 589898779 589896388 0.000000e+00 2815.0
12 TraesCS1D01G350100 chr1B 86.897 1473 169 22 1022 2487 589921066 589919611 0.000000e+00 1629.0
13 TraesCS1D01G350100 chr1B 75.560 1383 283 43 1055 2405 589887853 589889212 6.260000e-177 630.0
14 TraesCS1D01G350100 chr1B 90.000 70 6 1 3223 3292 589896282 589896214 4.720000e-14 89.8
15 TraesCS1D01G350100 chr5A 87.701 870 103 4 1078 1944 489667280 489666412 0.000000e+00 1011.0
16 TraesCS1D01G350100 chr5A 90.678 236 22 0 1117 1352 631741921 631742156 7.160000e-82 315.0
17 TraesCS1D01G350100 chr5A 76.987 239 44 10 1704 1938 641666392 641666161 3.600000e-25 126.0
18 TraesCS1D01G350100 chr5D 95.262 401 18 1 76 475 325964291 325963891 4.840000e-178 634.0
19 TraesCS1D01G350100 chr5D 100.000 78 0 0 1 78 3343441 3343518 9.940000e-31 145.0
20 TraesCS1D01G350100 chr5D 100.000 78 0 0 1 78 453534483 453534406 9.940000e-31 145.0
21 TraesCS1D01G350100 chr6B 93.990 416 21 2 76 487 163546043 163545628 8.100000e-176 627.0
22 TraesCS1D01G350100 chr6D 94.514 401 20 2 76 475 71519112 71519511 4.870000e-173 617.0
23 TraesCS1D01G350100 chr6D 100.000 78 0 0 1 78 6782986 6782909 9.940000e-31 145.0
24 TraesCS1D01G350100 chr6D 100.000 78 0 0 1 78 68565455 68565532 9.940000e-31 145.0
25 TraesCS1D01G350100 chr6D 100.000 78 0 0 1 78 100446897 100446974 9.940000e-31 145.0
26 TraesCS1D01G350100 chr7B 94.059 404 20 4 76 475 115233020 115232617 8.150000e-171 610.0
27 TraesCS1D01G350100 chr7B 92.519 401 26 2 76 475 2479118 2479515 3.850000e-159 571.0
28 TraesCS1D01G350100 chr4D 94.015 401 23 1 76 475 77119505 77119905 1.050000e-169 606.0
29 TraesCS1D01G350100 chr5B 93.516 401 25 1 76 475 358014989 358015389 2.280000e-166 595.0
30 TraesCS1D01G350100 chr5B 92.786 402 22 5 76 475 608354663 608354267 2.970000e-160 575.0
31 TraesCS1D01G350100 chr5B 73.626 637 138 25 1699 2317 644843935 644843311 5.780000e-53 219.0
32 TraesCS1D01G350100 chr4B 93.267 401 24 3 76 475 529408448 529408846 3.820000e-164 588.0
33 TraesCS1D01G350100 chr4B 91.102 236 21 0 1117 1352 650953121 650953356 1.540000e-83 320.0
34 TraesCS1D01G350100 chr3A 74.734 1409 307 40 1030 2418 509122476 509121097 4.940000e-163 584.0
35 TraesCS1D01G350100 chr2B 74.659 1393 298 45 1056 2416 728269995 728268626 1.790000e-157 566.0
36 TraesCS1D01G350100 chr2B 74.103 1394 304 49 1056 2416 728197696 728196327 3.930000e-144 521.0
37 TraesCS1D01G350100 chr2B 90.678 236 22 0 1117 1352 765218545 765218310 7.160000e-82 315.0
38 TraesCS1D01G350100 chr3D 74.414 1407 314 41 1030 2418 387770579 387769201 2.320000e-156 562.0
39 TraesCS1D01G350100 chr3D 73.598 1409 308 47 1026 2405 387710351 387708978 1.850000e-132 483.0
40 TraesCS1D01G350100 chr2A 74.462 1394 300 47 1056 2417 733132731 733131362 5.010000e-153 551.0
41 TraesCS1D01G350100 chr3B 73.944 1420 304 51 1026 2415 504067569 504068952 2.370000e-141 512.0
42 TraesCS1D01G350100 chr7A 91.525 236 20 0 1117 1352 664110065 664110300 3.310000e-85 326.0
43 TraesCS1D01G350100 chr7D 100.000 78 0 0 1 78 600304746 600304669 9.940000e-31 145.0
44 TraesCS1D01G350100 chr2D 100.000 78 0 0 1 78 88271819 88271742 9.940000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G350100 chr1D 436084806 436088242 3436 True 6348.000 6348 100.00000 1 3437 1 chr1D.!!$R1 3436
1 TraesCS1D01G350100 chr1D 436097182 436098637 1455 True 1746.000 1746 88.31500 1022 2487 1 chr1D.!!$R2 1465
2 TraesCS1D01G350100 chr1D 436082114 436083396 1282 False 660.000 660 76.42100 1055 2328 1 chr1D.!!$F1 1273
3 TraesCS1D01G350100 chr1A 533256174 533261196 5022 True 956.375 3406 88.94875 497 3390 4 chr1A.!!$R2 2893
4 TraesCS1D01G350100 chr1A 533253051 533254410 1359 False 652.000 652 75.78000 1055 2405 1 chr1A.!!$F1 1350
5 TraesCS1D01G350100 chr1B 589919611 589921066 1455 True 1629.000 1629 86.89700 1022 2487 1 chr1B.!!$R1 1465
6 TraesCS1D01G350100 chr1B 589896214 589898779 2565 True 1452.400 2815 89.10550 696 3292 2 chr1B.!!$R2 2596
7 TraesCS1D01G350100 chr1B 589887853 589889212 1359 False 630.000 630 75.56000 1055 2405 1 chr1B.!!$F1 1350
8 TraesCS1D01G350100 chr5A 489666412 489667280 868 True 1011.000 1011 87.70100 1078 1944 1 chr5A.!!$R1 866
9 TraesCS1D01G350100 chr5B 644843311 644843935 624 True 219.000 219 73.62600 1699 2317 1 chr5B.!!$R2 618
10 TraesCS1D01G350100 chr3A 509121097 509122476 1379 True 584.000 584 74.73400 1030 2418 1 chr3A.!!$R1 1388
11 TraesCS1D01G350100 chr2B 728268626 728269995 1369 True 566.000 566 74.65900 1056 2416 1 chr2B.!!$R2 1360
12 TraesCS1D01G350100 chr2B 728196327 728197696 1369 True 521.000 521 74.10300 1056 2416 1 chr2B.!!$R1 1360
13 TraesCS1D01G350100 chr3D 387769201 387770579 1378 True 562.000 562 74.41400 1030 2418 1 chr3D.!!$R2 1388
14 TraesCS1D01G350100 chr3D 387708978 387710351 1373 True 483.000 483 73.59800 1026 2405 1 chr3D.!!$R1 1379
15 TraesCS1D01G350100 chr2A 733131362 733132731 1369 True 551.000 551 74.46200 1056 2417 1 chr2A.!!$R1 1361
16 TraesCS1D01G350100 chr3B 504067569 504068952 1383 False 512.000 512 73.94400 1026 2415 1 chr3B.!!$F1 1389

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.039180 TCTTCCTCCTCCTACGCACA 59.961 55.0 0.0 0.0 0.0 4.57 F
265 266 0.110056 CAGCAACAAGATCACGCCAC 60.110 55.0 0.0 0.0 0.0 5.01 F
267 268 0.110056 GCAACAAGATCACGCCACTG 60.110 55.0 0.0 0.0 0.0 3.66 F
432 433 0.251073 GGCGGCTTCTGGTTTAGGTA 59.749 55.0 0.0 0.0 0.0 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 3808 1.069765 CTTGTCCTGCACCGACAGT 59.930 57.895 10.82 0.0 41.10 3.55 R
1716 3976 1.746615 CCCGATGCAGAACACCCTG 60.747 63.158 0.00 0.0 37.23 4.45 R
2300 4594 1.631071 CCTGAGCTTCCTCCCTTCCC 61.631 65.000 0.00 0.0 37.29 3.97 R
2493 4833 7.279758 ACTCTATTTTTCTCTTATGCTGCTGAC 59.720 37.037 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.455070 AGTTCTTCTTACCCTTGCCTTT 57.545 40.909 0.00 0.00 0.00 3.11
22 23 4.399219 AGTTCTTCTTACCCTTGCCTTTC 58.601 43.478 0.00 0.00 0.00 2.62
23 24 4.104897 AGTTCTTCTTACCCTTGCCTTTCT 59.895 41.667 0.00 0.00 0.00 2.52
24 25 4.724279 TCTTCTTACCCTTGCCTTTCTT 57.276 40.909 0.00 0.00 0.00 2.52
25 26 4.398319 TCTTCTTACCCTTGCCTTTCTTG 58.602 43.478 0.00 0.00 0.00 3.02
26 27 4.104102 TCTTCTTACCCTTGCCTTTCTTGA 59.896 41.667 0.00 0.00 0.00 3.02
27 28 4.447138 TCTTACCCTTGCCTTTCTTGAA 57.553 40.909 0.00 0.00 0.00 2.69
28 29 4.142038 TCTTACCCTTGCCTTTCTTGAAC 58.858 43.478 0.00 0.00 0.00 3.18
29 30 2.755952 ACCCTTGCCTTTCTTGAACT 57.244 45.000 0.00 0.00 0.00 3.01
30 31 3.032265 ACCCTTGCCTTTCTTGAACTT 57.968 42.857 0.00 0.00 0.00 2.66
31 32 4.178956 ACCCTTGCCTTTCTTGAACTTA 57.821 40.909 0.00 0.00 0.00 2.24
32 33 4.145052 ACCCTTGCCTTTCTTGAACTTAG 58.855 43.478 0.00 0.00 0.00 2.18
33 34 4.145052 CCCTTGCCTTTCTTGAACTTAGT 58.855 43.478 0.00 0.00 0.00 2.24
34 35 4.022849 CCCTTGCCTTTCTTGAACTTAGTG 60.023 45.833 0.00 0.00 0.00 2.74
35 36 4.022849 CCTTGCCTTTCTTGAACTTAGTGG 60.023 45.833 0.00 0.00 0.00 4.00
36 37 4.164843 TGCCTTTCTTGAACTTAGTGGT 57.835 40.909 0.00 0.00 0.00 4.16
37 38 4.532834 TGCCTTTCTTGAACTTAGTGGTT 58.467 39.130 0.00 0.00 0.00 3.67
38 39 4.953579 TGCCTTTCTTGAACTTAGTGGTTT 59.046 37.500 0.00 0.00 0.00 3.27
39 40 5.420739 TGCCTTTCTTGAACTTAGTGGTTTT 59.579 36.000 0.00 0.00 0.00 2.43
40 41 6.603997 TGCCTTTCTTGAACTTAGTGGTTTTA 59.396 34.615 0.00 0.00 0.00 1.52
41 42 7.286775 TGCCTTTCTTGAACTTAGTGGTTTTAT 59.713 33.333 0.00 0.00 0.00 1.40
42 43 8.141909 GCCTTTCTTGAACTTAGTGGTTTTATT 58.858 33.333 0.00 0.00 0.00 1.40
43 44 9.678941 CCTTTCTTGAACTTAGTGGTTTTATTC 57.321 33.333 0.00 0.00 0.00 1.75
46 47 8.161699 TCTTGAACTTAGTGGTTTTATTCACC 57.838 34.615 0.00 0.00 34.67 4.02
47 48 7.776030 TCTTGAACTTAGTGGTTTTATTCACCA 59.224 33.333 0.00 0.00 42.34 4.17
48 49 8.472007 TTGAACTTAGTGGTTTTATTCACCAT 57.528 30.769 0.00 0.00 46.19 3.55
49 50 8.106247 TGAACTTAGTGGTTTTATTCACCATC 57.894 34.615 0.00 0.00 46.19 3.51
50 51 7.721842 TGAACTTAGTGGTTTTATTCACCATCA 59.278 33.333 0.00 0.00 46.19 3.07
51 52 8.472007 AACTTAGTGGTTTTATTCACCATCAA 57.528 30.769 0.00 0.00 46.19 2.57
52 53 7.882179 ACTTAGTGGTTTTATTCACCATCAAC 58.118 34.615 0.00 0.00 46.19 3.18
53 54 7.504238 ACTTAGTGGTTTTATTCACCATCAACA 59.496 33.333 0.00 0.00 46.19 3.33
54 55 6.084326 AGTGGTTTTATTCACCATCAACAC 57.916 37.500 0.00 0.00 46.19 3.32
55 56 5.833131 AGTGGTTTTATTCACCATCAACACT 59.167 36.000 0.00 0.00 46.19 3.55
56 57 6.323739 AGTGGTTTTATTCACCATCAACACTT 59.676 34.615 0.00 0.00 46.19 3.16
57 58 6.420604 GTGGTTTTATTCACCATCAACACTTG 59.579 38.462 0.00 0.00 46.19 3.16
58 59 6.322456 TGGTTTTATTCACCATCAACACTTGA 59.678 34.615 0.00 0.00 39.53 3.02
74 75 6.966534 ACACTTGATGTTCCTTTCTGATTT 57.033 33.333 0.00 0.00 38.98 2.17
75 76 6.974965 ACACTTGATGTTCCTTTCTGATTTC 58.025 36.000 0.00 0.00 38.98 2.17
76 77 6.015940 ACACTTGATGTTCCTTTCTGATTTCC 60.016 38.462 0.00 0.00 38.98 3.13
77 78 6.016024 CACTTGATGTTCCTTTCTGATTTCCA 60.016 38.462 0.00 0.00 0.00 3.53
78 79 6.208204 ACTTGATGTTCCTTTCTGATTTCCAG 59.792 38.462 0.00 0.00 44.27 3.86
79 80 5.012239 TGATGTTCCTTTCTGATTTCCAGG 58.988 41.667 0.00 0.00 43.12 4.45
80 81 4.722526 TGTTCCTTTCTGATTTCCAGGA 57.277 40.909 0.00 0.00 43.12 3.86
81 82 5.261040 TGTTCCTTTCTGATTTCCAGGAT 57.739 39.130 0.00 0.00 43.12 3.24
82 83 5.256474 TGTTCCTTTCTGATTTCCAGGATC 58.744 41.667 0.00 0.00 43.12 3.36
83 84 5.014544 TGTTCCTTTCTGATTTCCAGGATCT 59.985 40.000 0.00 0.00 43.12 2.75
84 85 5.365021 TCCTTTCTGATTTCCAGGATCTC 57.635 43.478 0.00 0.00 43.12 2.75
85 86 4.164988 TCCTTTCTGATTTCCAGGATCTCC 59.835 45.833 0.00 0.00 43.12 3.71
87 88 5.339861 CCTTTCTGATTTCCAGGATCTCCTT 60.340 44.000 0.00 0.00 46.09 3.36
88 89 5.365021 TTCTGATTTCCAGGATCTCCTTC 57.635 43.478 0.00 0.00 46.09 3.46
89 90 3.713764 TCTGATTTCCAGGATCTCCTTCC 59.286 47.826 0.00 0.00 46.09 3.46
90 91 3.715834 CTGATTTCCAGGATCTCCTTCCT 59.284 47.826 0.00 0.00 46.09 3.36
95 96 2.928002 AGGATCTCCTTCCTGGCAG 58.072 57.895 7.75 7.75 46.09 4.85
96 97 0.693767 AGGATCTCCTTCCTGGCAGG 60.694 60.000 28.01 28.01 46.09 4.85
97 98 1.704007 GGATCTCCTTCCTGGCAGGG 61.704 65.000 32.23 17.61 35.59 4.45
98 99 2.336484 GATCTCCTTCCTGGCAGGGC 62.336 65.000 32.23 8.86 35.59 5.19
129 130 2.124403 CCACCTCCATGGCAGAGC 60.124 66.667 6.96 0.00 40.22 4.09
130 131 2.513204 CACCTCCATGGCAGAGCG 60.513 66.667 6.96 0.00 40.22 5.03
131 132 4.479993 ACCTCCATGGCAGAGCGC 62.480 66.667 6.96 0.00 40.22 5.92
132 133 4.172512 CCTCCATGGCAGAGCGCT 62.173 66.667 11.27 11.27 41.91 5.92
133 134 2.588314 CTCCATGGCAGAGCGCTC 60.588 66.667 30.01 30.01 41.91 5.03
134 135 4.519437 TCCATGGCAGAGCGCTCG 62.519 66.667 30.39 24.66 41.91 5.03
177 178 2.815647 CGCACCGCCTTCTTCCTC 60.816 66.667 0.00 0.00 0.00 3.71
178 179 2.436824 GCACCGCCTTCTTCCTCC 60.437 66.667 0.00 0.00 0.00 4.30
179 180 2.960688 GCACCGCCTTCTTCCTCCT 61.961 63.158 0.00 0.00 0.00 3.69
180 181 1.219393 CACCGCCTTCTTCCTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
181 182 1.990614 ACCGCCTTCTTCCTCCTCC 60.991 63.158 0.00 0.00 0.00 4.30
182 183 1.687493 CCGCCTTCTTCCTCCTCCT 60.687 63.158 0.00 0.00 0.00 3.69
183 184 0.397254 CCGCCTTCTTCCTCCTCCTA 60.397 60.000 0.00 0.00 0.00 2.94
184 185 0.747852 CGCCTTCTTCCTCCTCCTAC 59.252 60.000 0.00 0.00 0.00 3.18
185 186 0.747852 GCCTTCTTCCTCCTCCTACG 59.252 60.000 0.00 0.00 0.00 3.51
186 187 0.747852 CCTTCTTCCTCCTCCTACGC 59.252 60.000 0.00 0.00 0.00 4.42
187 188 1.475403 CTTCTTCCTCCTCCTACGCA 58.525 55.000 0.00 0.00 0.00 5.24
188 189 1.135333 CTTCTTCCTCCTCCTACGCAC 59.865 57.143 0.00 0.00 0.00 5.34
189 190 0.039180 TCTTCCTCCTCCTACGCACA 59.961 55.000 0.00 0.00 0.00 4.57
190 191 0.457851 CTTCCTCCTCCTACGCACAG 59.542 60.000 0.00 0.00 0.00 3.66
191 192 1.605058 TTCCTCCTCCTACGCACAGC 61.605 60.000 0.00 0.00 0.00 4.40
192 193 2.351244 CCTCCTCCTACGCACAGCA 61.351 63.158 0.00 0.00 0.00 4.41
193 194 1.140589 CTCCTCCTACGCACAGCAG 59.859 63.158 0.00 0.00 0.00 4.24
194 195 2.510238 CCTCCTACGCACAGCAGC 60.510 66.667 0.00 0.00 0.00 5.25
195 196 2.510238 CTCCTACGCACAGCAGCC 60.510 66.667 0.00 0.00 0.00 4.85
196 197 2.997315 TCCTACGCACAGCAGCCT 60.997 61.111 0.00 0.00 0.00 4.58
197 198 2.510238 CCTACGCACAGCAGCCTC 60.510 66.667 0.00 0.00 0.00 4.70
198 199 2.510238 CTACGCACAGCAGCCTCC 60.510 66.667 0.00 0.00 0.00 4.30
199 200 2.997315 TACGCACAGCAGCCTCCT 60.997 61.111 0.00 0.00 0.00 3.69
200 201 3.300934 TACGCACAGCAGCCTCCTG 62.301 63.158 0.00 0.00 42.13 3.86
201 202 4.383861 CGCACAGCAGCCTCCTGA 62.384 66.667 0.00 0.00 41.77 3.86
202 203 2.745492 GCACAGCAGCCTCCTGAC 60.745 66.667 0.00 0.00 41.77 3.51
203 204 2.046507 CACAGCAGCCTCCTGACC 60.047 66.667 0.00 0.00 41.77 4.02
204 205 3.325753 ACAGCAGCCTCCTGACCC 61.326 66.667 0.00 0.00 41.77 4.46
205 206 4.463879 CAGCAGCCTCCTGACCCG 62.464 72.222 0.00 0.00 41.77 5.28
211 212 4.787280 CCTCCTGACCCGGCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
212 213 2.685380 CTCCTGACCCGGCTCCTT 60.685 66.667 0.00 0.00 0.00 3.36
213 214 2.683933 TCCTGACCCGGCTCCTTC 60.684 66.667 0.00 0.00 0.00 3.46
214 215 4.148825 CCTGACCCGGCTCCTTCG 62.149 72.222 0.00 0.00 0.00 3.79
215 216 4.821589 CTGACCCGGCTCCTTCGC 62.822 72.222 0.00 0.00 0.00 4.70
219 220 4.697756 CCCGGCTCCTTCGCACAA 62.698 66.667 0.00 0.00 0.00 3.33
220 221 3.423154 CCGGCTCCTTCGCACAAC 61.423 66.667 0.00 0.00 0.00 3.32
221 222 3.423154 CGGCTCCTTCGCACAACC 61.423 66.667 0.00 0.00 0.00 3.77
222 223 3.423154 GGCTCCTTCGCACAACCG 61.423 66.667 0.00 0.00 0.00 4.44
223 224 4.090057 GCTCCTTCGCACAACCGC 62.090 66.667 0.00 0.00 0.00 5.68
231 232 3.554692 GCACAACCGCGATCTCCG 61.555 66.667 8.23 0.00 42.21 4.63
253 254 2.661537 CTGCGACGACCAGCAACA 60.662 61.111 0.00 0.00 43.31 3.33
254 255 2.202946 TGCGACGACCAGCAACAA 60.203 55.556 0.00 0.00 40.78 2.83
255 256 2.162921 CTGCGACGACCAGCAACAAG 62.163 60.000 0.00 0.00 43.31 3.16
256 257 1.954146 GCGACGACCAGCAACAAGA 60.954 57.895 0.00 0.00 0.00 3.02
257 258 1.291877 GCGACGACCAGCAACAAGAT 61.292 55.000 0.00 0.00 0.00 2.40
258 259 0.716108 CGACGACCAGCAACAAGATC 59.284 55.000 0.00 0.00 0.00 2.75
259 260 1.795768 GACGACCAGCAACAAGATCA 58.204 50.000 0.00 0.00 0.00 2.92
260 261 1.461127 GACGACCAGCAACAAGATCAC 59.539 52.381 0.00 0.00 0.00 3.06
261 262 0.439985 CGACCAGCAACAAGATCACG 59.560 55.000 0.00 0.00 0.00 4.35
262 263 0.166814 GACCAGCAACAAGATCACGC 59.833 55.000 0.00 0.00 0.00 5.34
263 264 1.237285 ACCAGCAACAAGATCACGCC 61.237 55.000 0.00 0.00 0.00 5.68
264 265 1.236616 CCAGCAACAAGATCACGCCA 61.237 55.000 0.00 0.00 0.00 5.69
265 266 0.110056 CAGCAACAAGATCACGCCAC 60.110 55.000 0.00 0.00 0.00 5.01
266 267 0.250467 AGCAACAAGATCACGCCACT 60.250 50.000 0.00 0.00 0.00 4.00
267 268 0.110056 GCAACAAGATCACGCCACTG 60.110 55.000 0.00 0.00 0.00 3.66
268 269 0.518636 CAACAAGATCACGCCACTGG 59.481 55.000 0.00 0.00 0.00 4.00
269 270 1.237285 AACAAGATCACGCCACTGGC 61.237 55.000 10.35 10.35 46.75 4.85
280 281 4.351054 CACTGGCCACCCCACCTC 62.351 72.222 0.00 0.00 39.18 3.85
284 285 4.366684 GGCCACCCCACCTCCAAG 62.367 72.222 0.00 0.00 0.00 3.61
285 286 4.366684 GCCACCCCACCTCCAAGG 62.367 72.222 0.00 0.00 42.49 3.61
286 287 4.366684 CCACCCCACCTCCAAGGC 62.367 72.222 0.00 0.00 39.63 4.35
287 288 3.260100 CACCCCACCTCCAAGGCT 61.260 66.667 0.00 0.00 39.63 4.58
288 289 3.260100 ACCCCACCTCCAAGGCTG 61.260 66.667 0.00 0.00 39.63 4.85
289 290 4.052518 CCCCACCTCCAAGGCTGG 62.053 72.222 0.00 7.32 45.08 4.85
290 291 4.748144 CCCACCTCCAAGGCTGGC 62.748 72.222 0.00 0.00 43.17 4.85
291 292 4.748144 CCACCTCCAAGGCTGGCC 62.748 72.222 3.00 3.00 43.17 5.36
292 293 4.748144 CACCTCCAAGGCTGGCCC 62.748 72.222 8.11 0.00 43.17 5.80
330 331 4.760047 CGAAGGGGCCTGTCGTGG 62.760 72.222 17.62 0.00 0.00 4.94
331 332 4.410400 GAAGGGGCCTGTCGTGGG 62.410 72.222 0.84 0.00 0.00 4.61
356 357 4.351054 CCAGCACCCTCCGCCTTT 62.351 66.667 0.00 0.00 0.00 3.11
357 358 3.058160 CAGCACCCTCCGCCTTTG 61.058 66.667 0.00 0.00 0.00 2.77
358 359 4.351054 AGCACCCTCCGCCTTTGG 62.351 66.667 0.00 0.00 0.00 3.28
411 412 2.913060 CGACCGGGGGAGGAGATC 60.913 72.222 6.32 0.00 34.73 2.75
420 421 3.541713 GAGGAGATCCGGCGGCTT 61.542 66.667 23.83 11.50 42.08 4.35
421 422 3.507597 GAGGAGATCCGGCGGCTTC 62.508 68.421 23.83 20.07 42.08 3.86
422 423 3.541713 GGAGATCCGGCGGCTTCT 61.542 66.667 24.93 24.93 0.00 2.85
423 424 2.279784 GAGATCCGGCGGCTTCTG 60.280 66.667 28.22 4.22 0.00 3.02
424 425 3.798954 GAGATCCGGCGGCTTCTGG 62.799 68.421 28.22 0.00 0.00 3.86
425 426 4.162690 GATCCGGCGGCTTCTGGT 62.163 66.667 23.83 0.03 34.12 4.00
426 427 3.682292 GATCCGGCGGCTTCTGGTT 62.682 63.158 23.83 0.00 34.12 3.67
427 428 3.268103 ATCCGGCGGCTTCTGGTTT 62.268 57.895 23.83 0.00 34.12 3.27
428 429 1.906105 ATCCGGCGGCTTCTGGTTTA 61.906 55.000 23.83 0.00 34.12 2.01
429 430 2.106683 CCGGCGGCTTCTGGTTTAG 61.107 63.158 15.42 0.00 0.00 1.85
430 431 2.106683 CGGCGGCTTCTGGTTTAGG 61.107 63.158 7.61 0.00 0.00 2.69
431 432 1.002502 GGCGGCTTCTGGTTTAGGT 60.003 57.895 0.00 0.00 0.00 3.08
432 433 0.251073 GGCGGCTTCTGGTTTAGGTA 59.749 55.000 0.00 0.00 0.00 3.08
433 434 1.134189 GGCGGCTTCTGGTTTAGGTAT 60.134 52.381 0.00 0.00 0.00 2.73
434 435 2.640184 GCGGCTTCTGGTTTAGGTATT 58.360 47.619 0.00 0.00 0.00 1.89
435 436 3.014623 GCGGCTTCTGGTTTAGGTATTT 58.985 45.455 0.00 0.00 0.00 1.40
436 437 3.181500 GCGGCTTCTGGTTTAGGTATTTG 60.181 47.826 0.00 0.00 0.00 2.32
437 438 3.377172 CGGCTTCTGGTTTAGGTATTTGG 59.623 47.826 0.00 0.00 0.00 3.28
438 439 3.699538 GGCTTCTGGTTTAGGTATTTGGG 59.300 47.826 0.00 0.00 0.00 4.12
439 440 3.699538 GCTTCTGGTTTAGGTATTTGGGG 59.300 47.826 0.00 0.00 0.00 4.96
440 441 4.278310 CTTCTGGTTTAGGTATTTGGGGG 58.722 47.826 0.00 0.00 0.00 5.40
441 442 2.024751 TCTGGTTTAGGTATTTGGGGGC 60.025 50.000 0.00 0.00 0.00 5.80
442 443 1.007359 TGGTTTAGGTATTTGGGGGCC 59.993 52.381 0.00 0.00 0.00 5.80
443 444 1.289830 GGTTTAGGTATTTGGGGGCCT 59.710 52.381 0.84 0.00 35.28 5.19
444 445 2.662866 GTTTAGGTATTTGGGGGCCTC 58.337 52.381 0.84 0.00 32.90 4.70
445 446 1.228190 TTAGGTATTTGGGGGCCTCC 58.772 55.000 17.64 17.64 32.90 4.30
446 447 1.057851 TAGGTATTTGGGGGCCTCCG 61.058 60.000 19.45 0.00 36.01 4.63
447 448 2.194868 GTATTTGGGGGCCTCCGG 59.805 66.667 19.45 0.00 36.01 5.14
448 449 2.043098 TATTTGGGGGCCTCCGGA 59.957 61.111 19.45 8.47 36.01 5.14
449 450 2.076184 TATTTGGGGGCCTCCGGAG 61.076 63.158 25.36 25.36 36.01 4.63
492 493 2.692741 GGGGGAGAAGAGGGGTGG 60.693 72.222 0.00 0.00 0.00 4.61
493 494 2.692741 GGGGAGAAGAGGGGTGGG 60.693 72.222 0.00 0.00 0.00 4.61
494 495 3.412408 GGGAGAAGAGGGGTGGGC 61.412 72.222 0.00 0.00 0.00 5.36
495 496 3.787001 GGAGAAGAGGGGTGGGCG 61.787 72.222 0.00 0.00 0.00 6.13
558 559 5.897050 AGAAAGAGTGGACGACATAATCTC 58.103 41.667 0.00 0.00 0.00 2.75
564 565 6.377429 AGAGTGGACGACATAATCTCACTTTA 59.623 38.462 0.00 0.00 33.66 1.85
568 588 8.665685 GTGGACGACATAATCTCACTTTATTTT 58.334 33.333 0.00 0.00 0.00 1.82
605 2721 7.004555 AGATACGATGTATTATTTCCCTGCA 57.995 36.000 0.00 0.00 0.00 4.41
606 2722 7.450074 AGATACGATGTATTATTTCCCTGCAA 58.550 34.615 0.00 0.00 0.00 4.08
715 2923 0.251354 ACGCACATTGGAGATGCTCT 59.749 50.000 0.00 0.00 37.20 4.09
750 2958 2.639286 GTGCAAACCACGAGCCAG 59.361 61.111 0.00 0.00 34.22 4.85
751 2959 3.286751 TGCAAACCACGAGCCAGC 61.287 61.111 0.00 0.00 0.00 4.85
752 2960 4.043200 GCAAACCACGAGCCAGCC 62.043 66.667 0.00 0.00 0.00 4.85
753 2961 2.594303 CAAACCACGAGCCAGCCA 60.594 61.111 0.00 0.00 0.00 4.75
810 3018 2.046988 CACCGCTGATGGCTCACA 60.047 61.111 0.00 0.00 39.13 3.58
821 3037 1.589196 GGCTCACATAGACGGACGC 60.589 63.158 0.00 0.00 0.00 5.19
841 3057 2.564553 GATGACCCGCTGCTCGAAGT 62.565 60.000 0.00 0.00 41.67 3.01
843 3059 3.991536 GACCCGCTGCTCGAAGTCC 62.992 68.421 0.00 0.00 41.67 3.85
869 3092 5.116882 GTCGCCTACTTTTATTCCACTCAT 58.883 41.667 0.00 0.00 0.00 2.90
882 3105 1.542915 CCACTCATCCAGTTGCCAAAG 59.457 52.381 0.00 0.00 30.26 2.77
884 3107 2.886523 CACTCATCCAGTTGCCAAAGAA 59.113 45.455 0.00 0.00 30.26 2.52
886 3109 2.886523 CTCATCCAGTTGCCAAAGAACA 59.113 45.455 0.00 0.00 0.00 3.18
899 3122 5.115480 GCCAAAGAACAACTTTTCATTCCA 58.885 37.500 0.00 0.00 45.22 3.53
908 3131 5.239525 ACAACTTTTCATTCCACTCTGCTAC 59.760 40.000 0.00 0.00 0.00 3.58
911 3134 6.402222 ACTTTTCATTCCACTCTGCTACTAG 58.598 40.000 0.00 0.00 0.00 2.57
914 3137 6.701145 TTCATTCCACTCTGCTACTAGTAG 57.299 41.667 23.25 23.25 36.29 2.57
924 3147 2.759538 CTACTAGTAGCAGCGACCAC 57.240 55.000 16.77 0.00 0.00 4.16
925 3148 1.334243 CTACTAGTAGCAGCGACCACC 59.666 57.143 16.77 0.00 0.00 4.61
926 3149 1.321074 ACTAGTAGCAGCGACCACCC 61.321 60.000 1.43 0.00 0.00 4.61
927 3150 2.017559 CTAGTAGCAGCGACCACCCC 62.018 65.000 1.43 0.00 0.00 4.95
928 3151 2.509931 TAGTAGCAGCGACCACCCCT 62.510 60.000 1.43 0.00 0.00 4.79
929 3152 3.390521 TAGCAGCGACCACCCCTG 61.391 66.667 0.00 0.00 0.00 4.45
958 3181 0.321996 GTGTCCTGTCCTTCACTCCC 59.678 60.000 0.00 0.00 0.00 4.30
984 3207 0.763223 ACACACTCCCCGACTCCTTT 60.763 55.000 0.00 0.00 0.00 3.11
1050 3282 0.892358 AGACGTTCGTGCTCTACCCA 60.892 55.000 1.74 0.00 0.00 4.51
1766 4042 4.082523 CGGCAAGAAGAGCGGGGA 62.083 66.667 0.00 0.00 0.00 4.81
2274 4568 1.228737 GGCGGAGGAGATAGAGGCT 60.229 63.158 0.00 0.00 0.00 4.58
2300 4594 1.222936 GGCTGGTGATGGAGACTGG 59.777 63.158 0.00 0.00 0.00 4.00
2493 4833 6.734137 TGGTAGTAACAACTTGCAGATTTTG 58.266 36.000 0.00 0.00 0.00 2.44
2550 4890 1.879380 GCATTAGTGTGTCCAGTGCAA 59.121 47.619 0.00 0.00 0.00 4.08
2559 4899 1.461268 TCCAGTGCAACAGGGAGGA 60.461 57.895 0.00 0.00 44.76 3.71
2621 4961 1.902938 TGTCGGCACCAAATCATCAA 58.097 45.000 0.00 0.00 0.00 2.57
2633 4973 2.048444 ATCATCAAAGAGGCATGCGT 57.952 45.000 13.68 13.68 0.00 5.24
2663 5003 6.985117 ACAGCAGTTCATTGTGATTGTATTT 58.015 32.000 0.00 0.00 0.00 1.40
2691 5035 4.097892 GGTCCAAACTGTTCATTGTGACTT 59.902 41.667 0.00 0.00 32.31 3.01
2713 5061 7.088905 ACTTTCAATTCTGAACAGATGCATTC 58.911 34.615 0.00 0.00 41.34 2.67
2748 5097 4.514441 ACATATTGTGATAGAGCTTGCAGC 59.486 41.667 0.00 0.47 42.84 5.25
2794 5143 2.837591 TGGAAGCACAACTAGCTATGGA 59.162 45.455 0.00 0.00 42.53 3.41
2845 5194 4.753610 TGAAGCATCTAATCTGCATAGCAC 59.246 41.667 0.00 0.00 42.15 4.40
2865 5217 2.236395 ACAACTACTATCACCACCTGCC 59.764 50.000 0.00 0.00 0.00 4.85
2933 5291 3.433740 GGAGGGAATCGATGCTAACCTTT 60.434 47.826 2.72 0.00 0.00 3.11
3027 5389 3.753294 TCAAGAACTCAGAGAACACCC 57.247 47.619 3.79 0.00 0.00 4.61
3029 5391 3.070159 TCAAGAACTCAGAGAACACCCTG 59.930 47.826 3.79 0.00 0.00 4.45
3043 5405 1.318158 ACCCTGTACGACGATCCACC 61.318 60.000 0.00 0.00 0.00 4.61
3100 5462 3.319137 TGACAGCCTCACATTACAGAC 57.681 47.619 0.00 0.00 0.00 3.51
3141 5503 4.280929 AGACAACTAAACCAAAATCAGGGC 59.719 41.667 0.00 0.00 0.00 5.19
3156 5518 1.035139 AGGGCAAGAACAGCACAAAG 58.965 50.000 0.00 0.00 38.04 2.77
3195 5557 2.266554 CTGTGTTAGTAGAGCTGCAGC 58.733 52.381 31.53 31.53 42.49 5.25
3232 5641 3.644966 TTTAGACAACCAGGCCTATGG 57.355 47.619 3.98 7.35 46.47 2.74
3252 5661 1.758862 GCTATGGCCCTGCTTTTCATT 59.241 47.619 0.00 0.00 0.00 2.57
3253 5662 2.482490 GCTATGGCCCTGCTTTTCATTG 60.482 50.000 0.00 0.00 0.00 2.82
3282 5691 1.886542 GGTAACCAGGTTTTGCTGGAG 59.113 52.381 11.02 0.00 43.08 3.86
3339 5748 3.069443 CCAAACACCACCAGCAAAAGTAT 59.931 43.478 0.00 0.00 0.00 2.12
3352 5761 7.717875 ACCAGCAAAAGTATAAAAGACAGTACA 59.282 33.333 0.00 0.00 0.00 2.90
3354 5763 7.746475 CAGCAAAAGTATAAAAGACAGTACAGC 59.254 37.037 0.00 0.00 0.00 4.40
3390 5803 5.463051 AAAATCCAGGATCTTCATCTGGT 57.537 39.130 1.11 1.32 32.87 4.00
3391 5804 4.703379 AATCCAGGATCTTCATCTGGTC 57.297 45.455 1.11 0.00 32.87 4.02
3392 5805 3.120468 TCCAGGATCTTCATCTGGTCA 57.880 47.619 12.87 0.00 32.87 4.02
3393 5806 3.453868 TCCAGGATCTTCATCTGGTCAA 58.546 45.455 12.87 0.00 32.87 3.18
3394 5807 3.845992 TCCAGGATCTTCATCTGGTCAAA 59.154 43.478 12.87 0.00 32.87 2.69
3395 5808 4.080695 TCCAGGATCTTCATCTGGTCAAAG 60.081 45.833 12.87 0.00 32.87 2.77
3396 5809 4.197750 CAGGATCTTCATCTGGTCAAAGG 58.802 47.826 0.00 0.00 0.00 3.11
3397 5810 2.948315 GGATCTTCATCTGGTCAAAGGC 59.052 50.000 0.00 0.00 0.00 4.35
3398 5811 2.496899 TCTTCATCTGGTCAAAGGCC 57.503 50.000 0.00 0.00 0.00 5.19
3399 5812 1.704628 TCTTCATCTGGTCAAAGGCCA 59.295 47.619 5.01 0.00 34.42 5.36
3400 5813 2.309755 TCTTCATCTGGTCAAAGGCCAT 59.690 45.455 5.01 0.00 35.19 4.40
3401 5814 2.425143 TCATCTGGTCAAAGGCCATC 57.575 50.000 5.01 0.00 35.19 3.51
3402 5815 1.634973 TCATCTGGTCAAAGGCCATCA 59.365 47.619 5.01 0.00 35.19 3.07
3403 5816 2.022195 CATCTGGTCAAAGGCCATCAG 58.978 52.381 5.01 0.00 35.19 2.90
3404 5817 1.067295 TCTGGTCAAAGGCCATCAGT 58.933 50.000 5.01 0.00 35.19 3.41
3405 5818 1.425066 TCTGGTCAAAGGCCATCAGTT 59.575 47.619 5.01 0.00 35.19 3.16
3406 5819 2.158475 TCTGGTCAAAGGCCATCAGTTT 60.158 45.455 5.01 0.00 35.19 2.66
3407 5820 1.962807 TGGTCAAAGGCCATCAGTTTG 59.037 47.619 5.01 6.81 33.32 2.93
3408 5821 1.273327 GGTCAAAGGCCATCAGTTTGG 59.727 52.381 5.01 0.00 39.94 3.28
3409 5822 1.963515 GTCAAAGGCCATCAGTTTGGT 59.036 47.619 5.01 0.00 39.11 3.67
3410 5823 2.365293 GTCAAAGGCCATCAGTTTGGTT 59.635 45.455 5.01 0.00 39.11 3.67
3411 5824 2.364970 TCAAAGGCCATCAGTTTGGTTG 59.635 45.455 5.01 0.00 39.11 3.77
3412 5825 1.341080 AAGGCCATCAGTTTGGTTGG 58.659 50.000 5.01 0.00 39.11 3.77
3413 5826 4.994744 GCCATCAGTTTGGTTGGC 57.005 55.556 0.00 0.00 46.94 4.52
3415 5828 1.974543 CCATCAGTTTGGTTGGCCC 59.025 57.895 0.00 0.00 31.74 5.80
3416 5829 0.542702 CCATCAGTTTGGTTGGCCCT 60.543 55.000 0.00 0.00 31.74 5.19
3417 5830 1.341080 CATCAGTTTGGTTGGCCCTT 58.659 50.000 0.00 0.00 0.00 3.95
3418 5831 1.001181 CATCAGTTTGGTTGGCCCTTG 59.999 52.381 0.00 0.00 0.00 3.61
3419 5832 0.260230 TCAGTTTGGTTGGCCCTTGA 59.740 50.000 0.00 0.00 0.00 3.02
3420 5833 0.675633 CAGTTTGGTTGGCCCTTGAG 59.324 55.000 0.00 0.00 0.00 3.02
3421 5834 0.469892 AGTTTGGTTGGCCCTTGAGG 60.470 55.000 0.00 0.00 39.47 3.86
3422 5835 0.469144 GTTTGGTTGGCCCTTGAGGA 60.469 55.000 0.00 0.00 38.24 3.71
3423 5836 0.263172 TTTGGTTGGCCCTTGAGGAA 59.737 50.000 0.00 0.00 38.24 3.36
3424 5837 0.486879 TTGGTTGGCCCTTGAGGAAT 59.513 50.000 0.00 0.00 38.24 3.01
3425 5838 0.039618 TGGTTGGCCCTTGAGGAATC 59.960 55.000 0.00 0.00 38.24 2.52
3426 5839 0.039618 GGTTGGCCCTTGAGGAATCA 59.960 55.000 0.00 0.00 38.24 2.57
3427 5840 1.549950 GGTTGGCCCTTGAGGAATCAA 60.550 52.381 0.00 0.00 38.24 2.57
3428 5841 1.821136 GTTGGCCCTTGAGGAATCAAG 59.179 52.381 0.00 10.37 44.80 3.02
3436 5849 4.431661 CTTGAGGAATCAAGGTTTGCTC 57.568 45.455 9.62 0.00 42.34 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.104897 AGAAAGGCAAGGGTAAGAAGAACT 59.895 41.667 0.00 0.00 0.00 3.01
3 4 4.104102 TCAAGAAAGGCAAGGGTAAGAAGA 59.896 41.667 0.00 0.00 0.00 2.87
4 5 4.398319 TCAAGAAAGGCAAGGGTAAGAAG 58.602 43.478 0.00 0.00 0.00 2.85
5 6 4.447138 TCAAGAAAGGCAAGGGTAAGAA 57.553 40.909 0.00 0.00 0.00 2.52
6 7 4.141251 AGTTCAAGAAAGGCAAGGGTAAGA 60.141 41.667 0.00 0.00 0.00 2.10
7 8 4.145052 AGTTCAAGAAAGGCAAGGGTAAG 58.855 43.478 0.00 0.00 0.00 2.34
8 9 4.178956 AGTTCAAGAAAGGCAAGGGTAA 57.821 40.909 0.00 0.00 0.00 2.85
9 10 3.876309 AGTTCAAGAAAGGCAAGGGTA 57.124 42.857 0.00 0.00 0.00 3.69
10 11 2.755952 AGTTCAAGAAAGGCAAGGGT 57.244 45.000 0.00 0.00 0.00 4.34
11 12 4.022849 CACTAAGTTCAAGAAAGGCAAGGG 60.023 45.833 0.00 0.00 0.00 3.95
12 13 4.022849 CCACTAAGTTCAAGAAAGGCAAGG 60.023 45.833 0.00 0.00 0.00 3.61
13 14 4.580580 ACCACTAAGTTCAAGAAAGGCAAG 59.419 41.667 0.00 0.00 0.00 4.01
14 15 4.532834 ACCACTAAGTTCAAGAAAGGCAA 58.467 39.130 0.00 0.00 0.00 4.52
15 16 4.164843 ACCACTAAGTTCAAGAAAGGCA 57.835 40.909 0.00 0.00 0.00 4.75
16 17 5.515797 AAACCACTAAGTTCAAGAAAGGC 57.484 39.130 0.00 0.00 0.00 4.35
17 18 9.678941 GAATAAAACCACTAAGTTCAAGAAAGG 57.321 33.333 0.00 0.00 0.00 3.11
20 21 8.626526 GGTGAATAAAACCACTAAGTTCAAGAA 58.373 33.333 0.00 0.00 37.65 2.52
21 22 7.776030 TGGTGAATAAAACCACTAAGTTCAAGA 59.224 33.333 0.00 0.00 42.82 3.02
22 23 7.936584 TGGTGAATAAAACCACTAAGTTCAAG 58.063 34.615 0.00 0.00 42.82 3.02
23 24 7.883391 TGGTGAATAAAACCACTAAGTTCAA 57.117 32.000 0.00 0.00 42.82 2.69
34 35 6.744112 TCAAGTGTTGATGGTGAATAAAACC 58.256 36.000 0.00 0.00 34.89 3.27
51 52 6.015940 GGAAATCAGAAAGGAACATCAAGTGT 60.016 38.462 0.00 0.00 44.84 3.55
52 53 6.016024 TGGAAATCAGAAAGGAACATCAAGTG 60.016 38.462 0.00 0.00 0.00 3.16
53 54 6.070656 TGGAAATCAGAAAGGAACATCAAGT 58.929 36.000 0.00 0.00 0.00 3.16
54 55 6.349944 CCTGGAAATCAGAAAGGAACATCAAG 60.350 42.308 0.00 0.00 46.18 3.02
55 56 5.477984 CCTGGAAATCAGAAAGGAACATCAA 59.522 40.000 0.00 0.00 46.18 2.57
56 57 5.012239 CCTGGAAATCAGAAAGGAACATCA 58.988 41.667 0.00 0.00 46.18 3.07
57 58 5.256474 TCCTGGAAATCAGAAAGGAACATC 58.744 41.667 0.00 0.00 46.18 3.06
58 59 5.261040 TCCTGGAAATCAGAAAGGAACAT 57.739 39.130 0.00 0.00 46.18 2.71
59 60 4.722526 TCCTGGAAATCAGAAAGGAACA 57.277 40.909 0.00 0.00 46.18 3.18
60 61 5.504853 AGATCCTGGAAATCAGAAAGGAAC 58.495 41.667 0.00 0.00 46.18 3.62
61 62 5.339530 GGAGATCCTGGAAATCAGAAAGGAA 60.340 44.000 0.00 0.00 46.18 3.36
62 63 4.164988 GGAGATCCTGGAAATCAGAAAGGA 59.835 45.833 0.00 0.00 46.18 3.36
63 64 4.165758 AGGAGATCCTGGAAATCAGAAAGG 59.834 45.833 0.00 0.00 46.55 3.11
64 65 5.370875 AGGAGATCCTGGAAATCAGAAAG 57.629 43.478 0.00 0.00 46.55 2.62
78 79 1.704007 CCCTGCCAGGAAGGAGATCC 61.704 65.000 16.67 0.00 37.67 3.36
79 80 1.835693 CCCTGCCAGGAAGGAGATC 59.164 63.158 16.67 0.00 37.67 2.75
80 81 2.381941 GCCCTGCCAGGAAGGAGAT 61.382 63.158 16.67 0.00 37.67 2.75
81 82 3.011517 GCCCTGCCAGGAAGGAGA 61.012 66.667 16.67 0.00 37.67 3.71
112 113 2.124403 GCTCTGCCATGGAGGTGG 60.124 66.667 18.40 1.74 42.35 4.61
113 114 2.513204 CGCTCTGCCATGGAGGTG 60.513 66.667 18.40 8.88 40.61 4.00
114 115 4.479993 GCGCTCTGCCATGGAGGT 62.480 66.667 18.40 0.00 40.61 3.85
160 161 2.815647 GAGGAAGAAGGCGGTGCG 60.816 66.667 0.00 0.00 0.00 5.34
161 162 2.436824 GGAGGAAGAAGGCGGTGC 60.437 66.667 0.00 0.00 0.00 5.01
162 163 1.219393 GAGGAGGAAGAAGGCGGTG 59.781 63.158 0.00 0.00 0.00 4.94
163 164 1.990614 GGAGGAGGAAGAAGGCGGT 60.991 63.158 0.00 0.00 0.00 5.68
164 165 0.397254 TAGGAGGAGGAAGAAGGCGG 60.397 60.000 0.00 0.00 0.00 6.13
165 166 0.747852 GTAGGAGGAGGAAGAAGGCG 59.252 60.000 0.00 0.00 0.00 5.52
166 167 0.747852 CGTAGGAGGAGGAAGAAGGC 59.252 60.000 0.00 0.00 0.00 4.35
167 168 0.747852 GCGTAGGAGGAGGAAGAAGG 59.252 60.000 0.00 0.00 0.00 3.46
168 169 1.135333 GTGCGTAGGAGGAGGAAGAAG 59.865 57.143 0.00 0.00 0.00 2.85
169 170 1.183549 GTGCGTAGGAGGAGGAAGAA 58.816 55.000 0.00 0.00 0.00 2.52
170 171 0.039180 TGTGCGTAGGAGGAGGAAGA 59.961 55.000 0.00 0.00 0.00 2.87
171 172 0.457851 CTGTGCGTAGGAGGAGGAAG 59.542 60.000 0.00 0.00 0.00 3.46
172 173 1.605058 GCTGTGCGTAGGAGGAGGAA 61.605 60.000 0.00 0.00 0.00 3.36
173 174 2.052690 GCTGTGCGTAGGAGGAGGA 61.053 63.158 0.00 0.00 0.00 3.71
174 175 2.290122 CTGCTGTGCGTAGGAGGAGG 62.290 65.000 1.30 0.00 33.06 4.30
175 176 1.140589 CTGCTGTGCGTAGGAGGAG 59.859 63.158 1.30 0.00 33.06 3.69
176 177 3.006756 GCTGCTGTGCGTAGGAGGA 62.007 63.158 9.88 0.00 36.72 3.71
177 178 2.510238 GCTGCTGTGCGTAGGAGG 60.510 66.667 9.88 0.00 36.72 4.30
178 179 2.510238 GGCTGCTGTGCGTAGGAG 60.510 66.667 0.00 4.49 38.94 3.69
179 180 2.997315 AGGCTGCTGTGCGTAGGA 60.997 61.111 0.00 0.00 0.00 2.94
180 181 2.510238 GAGGCTGCTGTGCGTAGG 60.510 66.667 0.00 0.00 0.00 3.18
181 182 2.510238 GGAGGCTGCTGTGCGTAG 60.510 66.667 0.00 0.00 0.00 3.51
182 183 2.997315 AGGAGGCTGCTGTGCGTA 60.997 61.111 8.08 0.00 0.00 4.42
183 184 4.694233 CAGGAGGCTGCTGTGCGT 62.694 66.667 25.94 0.00 30.66 5.24
184 185 4.383861 TCAGGAGGCTGCTGTGCG 62.384 66.667 31.20 10.14 37.12 5.34
185 186 2.745492 GTCAGGAGGCTGCTGTGC 60.745 66.667 31.20 22.12 37.12 4.57
186 187 2.046507 GGTCAGGAGGCTGCTGTG 60.047 66.667 31.20 12.10 37.12 3.66
187 188 3.325753 GGGTCAGGAGGCTGCTGT 61.326 66.667 31.20 0.00 37.12 4.40
188 189 4.463879 CGGGTCAGGAGGCTGCTG 62.464 72.222 27.96 27.96 37.15 4.41
194 195 4.787280 AGGAGCCGGGTCAGGAGG 62.787 72.222 32.94 0.00 0.00 4.30
195 196 2.685380 AAGGAGCCGGGTCAGGAG 60.685 66.667 32.94 0.00 0.00 3.69
196 197 2.683933 GAAGGAGCCGGGTCAGGA 60.684 66.667 32.94 0.00 0.00 3.86
197 198 4.148825 CGAAGGAGCCGGGTCAGG 62.149 72.222 32.94 15.66 0.00 3.86
198 199 4.821589 GCGAAGGAGCCGGGTCAG 62.822 72.222 32.94 21.21 0.00 3.51
202 203 4.697756 TTGTGCGAAGGAGCCGGG 62.698 66.667 2.18 0.00 36.02 5.73
203 204 3.423154 GTTGTGCGAAGGAGCCGG 61.423 66.667 0.00 0.00 36.02 6.13
204 205 3.423154 GGTTGTGCGAAGGAGCCG 61.423 66.667 0.00 0.00 36.02 5.52
205 206 3.423154 CGGTTGTGCGAAGGAGCC 61.423 66.667 0.00 0.00 36.02 4.70
206 207 4.090057 GCGGTTGTGCGAAGGAGC 62.090 66.667 0.00 0.00 37.71 4.70
214 215 3.554692 CGGAGATCGCGGTTGTGC 61.555 66.667 6.13 0.00 0.00 4.57
234 235 4.600576 TTGCTGGTCGTCGCAGCA 62.601 61.111 19.50 19.50 41.95 4.41
235 236 4.077188 GTTGCTGGTCGTCGCAGC 62.077 66.667 15.41 15.41 37.46 5.25
236 237 2.162921 CTTGTTGCTGGTCGTCGCAG 62.163 60.000 0.00 0.00 37.46 5.18
237 238 2.202946 TTGTTGCTGGTCGTCGCA 60.203 55.556 0.00 0.00 0.00 5.10
238 239 1.291877 ATCTTGTTGCTGGTCGTCGC 61.292 55.000 0.00 0.00 0.00 5.19
239 240 0.716108 GATCTTGTTGCTGGTCGTCG 59.284 55.000 0.00 0.00 0.00 5.12
240 241 1.461127 GTGATCTTGTTGCTGGTCGTC 59.539 52.381 0.00 0.00 0.00 4.20
241 242 1.512926 GTGATCTTGTTGCTGGTCGT 58.487 50.000 0.00 0.00 0.00 4.34
242 243 0.439985 CGTGATCTTGTTGCTGGTCG 59.560 55.000 0.00 0.00 0.00 4.79
243 244 0.166814 GCGTGATCTTGTTGCTGGTC 59.833 55.000 0.00 0.00 0.00 4.02
244 245 1.237285 GGCGTGATCTTGTTGCTGGT 61.237 55.000 0.00 0.00 0.00 4.00
245 246 1.236616 TGGCGTGATCTTGTTGCTGG 61.237 55.000 0.00 0.00 0.00 4.85
246 247 0.110056 GTGGCGTGATCTTGTTGCTG 60.110 55.000 0.00 0.00 0.00 4.41
247 248 0.250467 AGTGGCGTGATCTTGTTGCT 60.250 50.000 0.00 0.00 0.00 3.91
248 249 0.110056 CAGTGGCGTGATCTTGTTGC 60.110 55.000 0.00 0.00 0.00 4.17
249 250 0.518636 CCAGTGGCGTGATCTTGTTG 59.481 55.000 0.00 0.00 0.00 3.33
250 251 1.237285 GCCAGTGGCGTGATCTTGTT 61.237 55.000 20.55 0.00 39.62 2.83
251 252 1.672356 GCCAGTGGCGTGATCTTGT 60.672 57.895 20.55 0.00 39.62 3.16
252 253 3.181367 GCCAGTGGCGTGATCTTG 58.819 61.111 20.55 0.00 39.62 3.02
263 264 4.351054 GAGGTGGGGTGGCCAGTG 62.351 72.222 5.11 0.00 0.00 3.66
267 268 4.366684 CTTGGAGGTGGGGTGGCC 62.367 72.222 0.00 0.00 0.00 5.36
268 269 4.366684 CCTTGGAGGTGGGGTGGC 62.367 72.222 0.00 0.00 0.00 5.01
269 270 4.366684 GCCTTGGAGGTGGGGTGG 62.367 72.222 0.00 0.00 37.80 4.61
270 271 3.260100 AGCCTTGGAGGTGGGGTG 61.260 66.667 0.00 0.00 37.80 4.61
271 272 3.260100 CAGCCTTGGAGGTGGGGT 61.260 66.667 0.00 0.00 37.80 4.95
313 314 4.760047 CCACGACAGGCCCCTTCG 62.760 72.222 14.88 14.88 38.73 3.79
314 315 4.410400 CCCACGACAGGCCCCTTC 62.410 72.222 0.00 0.00 0.00 3.46
339 340 4.351054 AAAGGCGGAGGGTGCTGG 62.351 66.667 0.00 0.00 0.00 4.85
340 341 3.058160 CAAAGGCGGAGGGTGCTG 61.058 66.667 0.00 0.00 0.00 4.41
341 342 4.351054 CCAAAGGCGGAGGGTGCT 62.351 66.667 0.00 0.00 0.00 4.40
394 395 2.913060 GATCTCCTCCCCCGGTCG 60.913 72.222 0.00 0.00 0.00 4.79
395 396 2.524640 GGATCTCCTCCCCCGGTC 60.525 72.222 0.00 0.00 38.19 4.79
396 397 4.541648 CGGATCTCCTCCCCCGGT 62.542 72.222 0.00 0.00 41.49 5.28
403 404 3.507597 GAAGCCGCCGGATCTCCTC 62.508 68.421 7.68 0.00 0.00 3.71
404 405 3.541713 GAAGCCGCCGGATCTCCT 61.542 66.667 7.68 0.00 0.00 3.69
405 406 3.541713 AGAAGCCGCCGGATCTCC 61.542 66.667 7.68 0.00 0.00 3.71
406 407 2.279784 CAGAAGCCGCCGGATCTC 60.280 66.667 7.68 0.81 0.00 2.75
407 408 3.854669 CCAGAAGCCGCCGGATCT 61.855 66.667 7.68 6.71 0.00 2.75
408 409 3.682292 AACCAGAAGCCGCCGGATC 62.682 63.158 7.68 3.92 0.00 3.36
409 410 1.906105 TAAACCAGAAGCCGCCGGAT 61.906 55.000 7.68 0.00 0.00 4.18
410 411 2.515996 CTAAACCAGAAGCCGCCGGA 62.516 60.000 7.68 0.00 0.00 5.14
411 412 2.046700 TAAACCAGAAGCCGCCGG 60.047 61.111 0.00 0.00 0.00 6.13
412 413 2.106683 CCTAAACCAGAAGCCGCCG 61.107 63.158 0.00 0.00 0.00 6.46
413 414 0.251073 TACCTAAACCAGAAGCCGCC 59.749 55.000 0.00 0.00 0.00 6.13
414 415 2.327200 ATACCTAAACCAGAAGCCGC 57.673 50.000 0.00 0.00 0.00 6.53
415 416 3.377172 CCAAATACCTAAACCAGAAGCCG 59.623 47.826 0.00 0.00 0.00 5.52
416 417 3.699538 CCCAAATACCTAAACCAGAAGCC 59.300 47.826 0.00 0.00 0.00 4.35
417 418 3.699538 CCCCAAATACCTAAACCAGAAGC 59.300 47.826 0.00 0.00 0.00 3.86
418 419 4.278310 CCCCCAAATACCTAAACCAGAAG 58.722 47.826 0.00 0.00 0.00 2.85
419 420 3.564790 GCCCCCAAATACCTAAACCAGAA 60.565 47.826 0.00 0.00 0.00 3.02
420 421 2.024751 GCCCCCAAATACCTAAACCAGA 60.025 50.000 0.00 0.00 0.00 3.86
421 422 2.384828 GCCCCCAAATACCTAAACCAG 58.615 52.381 0.00 0.00 0.00 4.00
422 423 1.007359 GGCCCCCAAATACCTAAACCA 59.993 52.381 0.00 0.00 0.00 3.67
423 424 1.289830 AGGCCCCCAAATACCTAAACC 59.710 52.381 0.00 0.00 0.00 3.27
424 425 2.662866 GAGGCCCCCAAATACCTAAAC 58.337 52.381 0.00 0.00 30.95 2.01
425 426 1.571936 GGAGGCCCCCAAATACCTAAA 59.428 52.381 0.00 0.00 30.95 1.85
426 427 1.228190 GGAGGCCCCCAAATACCTAA 58.772 55.000 0.00 0.00 30.95 2.69
427 428 1.057851 CGGAGGCCCCCAAATACCTA 61.058 60.000 3.33 0.00 30.95 3.08
428 429 2.383601 CGGAGGCCCCCAAATACCT 61.384 63.158 3.33 0.00 34.43 3.08
429 430 2.194868 CGGAGGCCCCCAAATACC 59.805 66.667 3.33 0.00 0.00 2.73
430 431 2.194868 CCGGAGGCCCCCAAATAC 59.805 66.667 3.33 0.00 46.14 1.89
475 476 2.692741 CCACCCCTCTTCTCCCCC 60.693 72.222 0.00 0.00 0.00 5.40
476 477 2.692741 CCCACCCCTCTTCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
477 478 3.412408 GCCCACCCCTCTTCTCCC 61.412 72.222 0.00 0.00 0.00 4.30
478 479 3.787001 CGCCCACCCCTCTTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
479 480 2.683933 TCGCCCACCCCTCTTCTC 60.684 66.667 0.00 0.00 0.00 2.87
480 481 2.685380 CTCGCCCACCCCTCTTCT 60.685 66.667 0.00 0.00 0.00 2.85
481 482 2.683933 TCTCGCCCACCCCTCTTC 60.684 66.667 0.00 0.00 0.00 2.87
482 483 2.685380 CTCTCGCCCACCCCTCTT 60.685 66.667 0.00 0.00 0.00 2.85
483 484 3.670629 CTCTCTCGCCCACCCCTCT 62.671 68.421 0.00 0.00 0.00 3.69
484 485 3.151022 CTCTCTCGCCCACCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
485 486 2.748641 TTTCTCTCTCGCCCACCCCT 62.749 60.000 0.00 0.00 0.00 4.79
486 487 1.838073 TTTTCTCTCTCGCCCACCCC 61.838 60.000 0.00 0.00 0.00 4.95
487 488 0.036306 TTTTTCTCTCTCGCCCACCC 59.964 55.000 0.00 0.00 0.00 4.61
488 489 3.625745 TTTTTCTCTCTCGCCCACC 57.374 52.632 0.00 0.00 0.00 4.61
509 510 9.762381 TTCATCCAACCTTATACCAGTTTTAAT 57.238 29.630 0.00 0.00 0.00 1.40
511 512 8.607713 TCTTCATCCAACCTTATACCAGTTTTA 58.392 33.333 0.00 0.00 0.00 1.52
512 513 7.466804 TCTTCATCCAACCTTATACCAGTTTT 58.533 34.615 0.00 0.00 0.00 2.43
515 516 6.636454 TTCTTCATCCAACCTTATACCAGT 57.364 37.500 0.00 0.00 0.00 4.00
517 518 7.037586 ACTCTTTCTTCATCCAACCTTATACCA 60.038 37.037 0.00 0.00 0.00 3.25
518 519 7.281100 CACTCTTTCTTCATCCAACCTTATACC 59.719 40.741 0.00 0.00 0.00 2.73
519 520 7.281100 CCACTCTTTCTTCATCCAACCTTATAC 59.719 40.741 0.00 0.00 0.00 1.47
520 521 7.182026 TCCACTCTTTCTTCATCCAACCTTATA 59.818 37.037 0.00 0.00 0.00 0.98
568 588 9.661563 AATACATCGTATCTTCAGTGGTTTAAA 57.338 29.630 0.00 0.00 0.00 1.52
579 599 7.602644 TGCAGGGAAATAATACATCGTATCTTC 59.397 37.037 0.00 0.00 0.00 2.87
585 605 6.767524 TTTTGCAGGGAAATAATACATCGT 57.232 33.333 0.00 0.00 0.00 3.73
669 2785 8.911247 AGCTTGTGGATTAAAATATTTTCGTC 57.089 30.769 16.56 14.56 0.00 4.20
677 2885 6.149640 TGTGCGTTAGCTTGTGGATTAAAATA 59.850 34.615 0.00 0.00 45.42 1.40
679 2887 4.276183 TGTGCGTTAGCTTGTGGATTAAAA 59.724 37.500 0.00 0.00 45.42 1.52
749 2957 1.559682 AGTGGGAAATACGTGATGGCT 59.440 47.619 0.00 0.00 0.00 4.75
750 2958 2.038387 AGTGGGAAATACGTGATGGC 57.962 50.000 0.00 0.00 0.00 4.40
751 2959 2.682856 CCAAGTGGGAAATACGTGATGG 59.317 50.000 0.00 0.00 40.01 3.51
752 2960 3.343617 ACCAAGTGGGAAATACGTGATG 58.656 45.455 0.00 0.00 41.15 3.07
753 2961 3.713826 ACCAAGTGGGAAATACGTGAT 57.286 42.857 0.00 0.00 41.15 3.06
810 3018 1.653115 GGTCATCGCGTCCGTCTAT 59.347 57.895 5.77 0.00 35.54 1.98
821 3037 3.699955 TTCGAGCAGCGGGTCATCG 62.700 63.158 16.14 3.20 41.62 3.84
837 3053 0.810016 AAGTAGGCGACGAGGACTTC 59.190 55.000 0.00 0.00 0.00 3.01
841 3057 3.181483 GGAATAAAAGTAGGCGACGAGGA 60.181 47.826 0.00 0.00 0.00 3.71
843 3059 3.550678 GTGGAATAAAAGTAGGCGACGAG 59.449 47.826 0.00 0.00 0.00 4.18
882 3105 4.978580 GCAGAGTGGAATGAAAAGTTGTTC 59.021 41.667 0.00 0.00 0.00 3.18
884 3107 4.210331 AGCAGAGTGGAATGAAAAGTTGT 58.790 39.130 0.00 0.00 0.00 3.32
886 3109 5.625150 AGTAGCAGAGTGGAATGAAAAGTT 58.375 37.500 0.00 0.00 0.00 2.66
908 3131 1.437986 GGGTGGTCGCTGCTACTAG 59.562 63.158 4.25 0.00 0.00 2.57
911 3134 3.391382 AGGGGTGGTCGCTGCTAC 61.391 66.667 0.00 0.00 37.27 3.58
930 3153 4.969196 ACAGGACACCACGCAGCG 62.969 66.667 14.82 14.82 0.00 5.18
931 3154 3.044305 GACAGGACACCACGCAGC 61.044 66.667 0.00 0.00 0.00 5.25
932 3155 2.357517 GGACAGGACACCACGCAG 60.358 66.667 0.00 0.00 0.00 5.18
933 3156 2.377628 GAAGGACAGGACACCACGCA 62.378 60.000 0.00 0.00 0.00 5.24
934 3157 1.668151 GAAGGACAGGACACCACGC 60.668 63.158 0.00 0.00 0.00 5.34
935 3158 0.600255 GTGAAGGACAGGACACCACG 60.600 60.000 0.00 0.00 0.00 4.94
936 3159 0.759346 AGTGAAGGACAGGACACCAC 59.241 55.000 0.00 0.00 34.33 4.16
937 3160 1.048601 GAGTGAAGGACAGGACACCA 58.951 55.000 0.00 0.00 34.33 4.17
938 3161 0.321996 GGAGTGAAGGACAGGACACC 59.678 60.000 0.00 0.00 34.33 4.16
939 3162 0.321996 GGGAGTGAAGGACAGGACAC 59.678 60.000 0.00 0.00 0.00 3.67
940 3163 0.836400 GGGGAGTGAAGGACAGGACA 60.836 60.000 0.00 0.00 0.00 4.02
941 3164 1.554583 GGGGGAGTGAAGGACAGGAC 61.555 65.000 0.00 0.00 0.00 3.85
1017 3240 4.849329 GTCTTCGCCGACGCCGAT 62.849 66.667 0.39 0.00 39.84 4.18
1551 3808 1.069765 CTTGTCCTGCACCGACAGT 59.930 57.895 10.82 0.00 41.10 3.55
1716 3976 1.746615 CCCGATGCAGAACACCCTG 60.747 63.158 0.00 0.00 37.23 4.45
2300 4594 1.631071 CCTGAGCTTCCTCCCTTCCC 61.631 65.000 0.00 0.00 37.29 3.97
2493 4833 7.279758 ACTCTATTTTTCTCTTATGCTGCTGAC 59.720 37.037 0.00 0.00 0.00 3.51
2550 4890 0.908198 GAGCAATGAGTCCTCCCTGT 59.092 55.000 0.00 0.00 0.00 4.00
2586 4926 6.198966 GGTGCCGACATTATTCAATTTGATTC 59.801 38.462 0.00 0.00 0.00 2.52
2621 4961 2.679837 CTGTATTTGACGCATGCCTCTT 59.320 45.455 13.15 2.82 0.00 2.85
2633 4973 6.822667 ATCACAATGAACTGCTGTATTTGA 57.177 33.333 15.37 10.66 0.00 2.69
2663 5003 5.641209 CACAATGAACAGTTTGGACCAAAAA 59.359 36.000 21.20 0.00 35.03 1.94
2667 5007 3.380004 GTCACAATGAACAGTTTGGACCA 59.620 43.478 0.00 0.00 0.00 4.02
2668 5008 3.632145 AGTCACAATGAACAGTTTGGACC 59.368 43.478 0.00 0.00 0.00 4.46
2669 5009 4.900635 AGTCACAATGAACAGTTTGGAC 57.099 40.909 0.00 0.00 0.00 4.02
2672 5012 7.760131 ATTGAAAGTCACAATGAACAGTTTG 57.240 32.000 0.00 0.00 36.74 2.93
2691 5035 6.578163 TGAATGCATCTGTTCAGAATTGAA 57.422 33.333 0.00 0.00 40.92 2.69
2748 5097 4.637483 TCCAAACTGAAGCTGTGAAAAG 57.363 40.909 0.00 0.00 0.00 2.27
2829 5178 6.471233 AGTAGTTGTGCTATGCAGATTAGA 57.529 37.500 0.00 0.00 40.08 2.10
2845 5194 2.738643 CGGCAGGTGGTGATAGTAGTTG 60.739 54.545 0.00 0.00 0.00 3.16
2865 5217 2.979813 GTTGTGAATTTACAGGCTTGCG 59.020 45.455 3.07 0.00 0.00 4.85
2933 5291 6.968263 TGGTCTTGGAATTGTGTGATTTTA 57.032 33.333 0.00 0.00 0.00 1.52
3027 5389 0.169672 AACGGTGGATCGTCGTACAG 59.830 55.000 6.96 0.00 43.07 2.74
3029 5391 0.986992 CAAACGGTGGATCGTCGTAC 59.013 55.000 6.96 0.00 43.07 3.67
3043 5405 3.659092 TGGAAGCGCAGGCAAACG 61.659 61.111 11.47 0.00 43.41 3.60
3100 5462 8.994429 AGTTGTCTCAAGATCATTACACTTAG 57.006 34.615 0.00 0.00 0.00 2.18
3111 5473 8.567948 TGATTTTGGTTTAGTTGTCTCAAGATC 58.432 33.333 0.00 0.00 0.00 2.75
3117 5479 5.564848 GCCCTGATTTTGGTTTAGTTGTCTC 60.565 44.000 0.00 0.00 0.00 3.36
3156 5518 1.375098 GGCATTGCTCTCTCCTGCAC 61.375 60.000 8.82 0.00 39.05 4.57
3161 5523 0.035630 ACACAGGCATTGCTCTCTCC 60.036 55.000 8.82 0.00 0.00 3.71
3195 5557 9.953825 GTTGTCTAAAAAGATTGTACATCGTAG 57.046 33.333 0.00 0.86 0.00 3.51
3203 5565 5.475564 GGCCTGGTTGTCTAAAAAGATTGTA 59.524 40.000 0.00 0.00 0.00 2.41
3232 5641 1.406903 ATGAAAAGCAGGGCCATAGC 58.593 50.000 6.18 6.95 38.76 2.97
3241 5650 5.600908 CCATTTGGTTCAATGAAAAGCAG 57.399 39.130 0.00 0.00 35.72 4.24
3282 5691 2.185004 TGTTTCTCTTAGCTGGCACC 57.815 50.000 0.00 0.00 0.00 5.01
3292 5701 4.984146 AGGGAGCTACTTTGTTTCTCTT 57.016 40.909 0.00 0.00 0.00 2.85
3293 5702 5.186215 GTCTAGGGAGCTACTTTGTTTCTCT 59.814 44.000 0.00 0.00 0.00 3.10
3294 5703 5.412640 GTCTAGGGAGCTACTTTGTTTCTC 58.587 45.833 0.00 0.00 0.00 2.87
3370 5783 4.042884 TGACCAGATGAAGATCCTGGATT 58.957 43.478 18.51 0.00 38.47 3.01
3390 5803 2.364970 CAACCAAACTGATGGCCTTTGA 59.635 45.455 14.29 0.00 44.75 2.69
3391 5804 2.548493 CCAACCAAACTGATGGCCTTTG 60.548 50.000 3.32 5.82 44.75 2.77
3392 5805 1.693606 CCAACCAAACTGATGGCCTTT 59.306 47.619 3.32 0.00 44.75 3.11
3393 5806 1.341080 CCAACCAAACTGATGGCCTT 58.659 50.000 3.32 0.00 44.75 4.35
3394 5807 3.056213 CCAACCAAACTGATGGCCT 57.944 52.632 3.32 0.00 44.75 5.19
3397 5810 0.542702 AGGGCCAACCAAACTGATGG 60.543 55.000 6.18 3.33 46.38 3.51
3398 5811 1.001181 CAAGGGCCAACCAAACTGATG 59.999 52.381 6.18 0.00 43.89 3.07
3399 5812 1.133199 TCAAGGGCCAACCAAACTGAT 60.133 47.619 6.18 0.00 43.89 2.90
3400 5813 0.260230 TCAAGGGCCAACCAAACTGA 59.740 50.000 6.18 0.00 43.89 3.41
3401 5814 0.675633 CTCAAGGGCCAACCAAACTG 59.324 55.000 6.18 0.00 43.89 3.16
3402 5815 0.469892 CCTCAAGGGCCAACCAAACT 60.470 55.000 6.18 0.00 43.89 2.66
3403 5816 0.469144 TCCTCAAGGGCCAACCAAAC 60.469 55.000 6.18 0.00 43.89 2.93
3404 5817 0.263172 TTCCTCAAGGGCCAACCAAA 59.737 50.000 6.18 0.00 43.89 3.28
3405 5818 0.486879 ATTCCTCAAGGGCCAACCAA 59.513 50.000 6.18 0.00 43.89 3.67
3406 5819 0.039618 GATTCCTCAAGGGCCAACCA 59.960 55.000 6.18 0.00 43.89 3.67
3407 5820 0.039618 TGATTCCTCAAGGGCCAACC 59.960 55.000 6.18 0.00 40.67 3.77
3408 5821 1.923356 TTGATTCCTCAAGGGCCAAC 58.077 50.000 6.18 0.00 36.46 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.