Multiple sequence alignment - TraesCS1D01G349500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G349500 chr1D 100.000 5038 0 0 1 5038 435750819 435755856 0.000000e+00 9304
1 TraesCS1D01G349500 chr1D 83.505 388 42 8 3254 3635 435799960 435800331 4.830000e-90 342
2 TraesCS1D01G349500 chr1D 87.719 285 31 4 2657 2941 326292024 326292304 3.760000e-86 329
3 TraesCS1D01G349500 chr1A 94.637 1846 57 13 836 2655 533142845 533144674 0.000000e+00 2822
4 TraesCS1D01G349500 chr1A 93.644 1526 68 11 2656 4177 533144721 533146221 0.000000e+00 2254
5 TraesCS1D01G349500 chr1A 95.600 250 7 3 400 648 396236138 396236384 1.020000e-106 398
6 TraesCS1D01G349500 chr1A 87.719 285 32 3 2657 2941 412466787 412467068 3.760000e-86 329
7 TraesCS1D01G349500 chr1A 89.286 252 26 1 1 251 533141984 533142235 1.050000e-81 315
8 TraesCS1D01G349500 chr1B 94.849 1592 59 5 2655 4226 589068097 589069685 0.000000e+00 2464
9 TraesCS1D01G349500 chr1B 91.621 1098 42 20 698 1764 589066312 589067390 0.000000e+00 1472
10 TraesCS1D01G349500 chr1B 96.847 666 19 2 1990 2655 589067388 589068051 0.000000e+00 1112
11 TraesCS1D01G349500 chr1B 87.859 313 13 10 4726 5038 589069945 589070232 1.340000e-90 344
12 TraesCS1D01G349500 chr1B 87.059 255 20 7 155 401 589065778 589066027 4.970000e-70 276
13 TraesCS1D01G349500 chr1B 84.146 246 35 4 3931 4176 589131806 589132047 8.430000e-58 235
14 TraesCS1D01G349500 chr1B 97.368 114 3 0 4226 4339 589069715 589069828 1.430000e-45 195
15 TraesCS1D01G349500 chr3D 97.925 241 5 0 402 642 133100728 133100488 7.800000e-113 418
16 TraesCS1D01G349500 chr4D 83.750 480 37 11 4226 4686 138705109 138704652 2.810000e-112 416
17 TraesCS1D01G349500 chr4D 97.541 244 5 1 400 643 309624799 309624557 2.810000e-112 416
18 TraesCS1D01G349500 chr4D 95.062 243 11 1 400 642 347485296 347485055 1.020000e-101 381
19 TraesCS1D01G349500 chr4D 94.672 244 11 2 400 642 204978437 204978679 1.320000e-100 377
20 TraesCS1D01G349500 chr4D 88.380 284 32 1 2659 2941 211388037 211388320 1.740000e-89 340
21 TraesCS1D01G349500 chr4D 97.826 138 3 0 4901 5038 138704041 138703904 6.520000e-59 239
22 TraesCS1D01G349500 chr7D 95.492 244 10 1 400 642 182599089 182599332 6.120000e-104 388
23 TraesCS1D01G349500 chr7D 89.444 180 18 1 4695 4874 183790248 183790426 5.070000e-55 226
24 TraesCS1D01G349500 chr5B 95.142 247 11 1 400 646 292166005 292166250 6.120000e-104 388
25 TraesCS1D01G349500 chr5B 90.230 174 15 2 4700 4872 607838561 607838389 5.070000e-55 226
26 TraesCS1D01G349500 chr4B 85.789 380 33 4 4226 4604 227301280 227300921 2.850000e-102 383
27 TraesCS1D01G349500 chr4B 88.732 284 31 1 2659 2941 282886370 282886653 3.730000e-91 346
28 TraesCS1D01G349500 chr4B 87.676 284 33 2 2659 2941 107453313 107453031 3.760000e-86 329
29 TraesCS1D01G349500 chr5D 95.062 243 11 1 400 642 97035229 97034988 1.020000e-101 381
30 TraesCS1D01G349500 chr5D 88.947 190 13 5 4687 4871 5112164 5112350 1.410000e-55 228
31 TraesCS1D01G349500 chr5D 92.025 163 12 1 4710 4872 476690310 476690149 1.410000e-55 228
32 TraesCS1D01G349500 chr6D 94.650 243 12 1 400 642 50679871 50680112 4.760000e-100 375
33 TraesCS1D01G349500 chr3A 89.310 290 24 6 2656 2944 164407671 164407954 1.720000e-94 357
34 TraesCS1D01G349500 chr4A 89.085 284 30 1 2659 2941 512543204 512543487 8.020000e-93 351
35 TraesCS1D01G349500 chr4A 92.083 240 18 1 4363 4602 415856328 415856566 2.250000e-88 337
36 TraesCS1D01G349500 chr4A 97.842 139 3 0 4900 5038 415857340 415857478 1.810000e-59 241
37 TraesCS1D01G349500 chr4A 93.137 102 7 0 4226 4327 415855910 415856011 3.140000e-32 150
38 TraesCS1D01G349500 chr5A 92.121 165 13 0 4708 4872 320214407 320214243 3.030000e-57 233
39 TraesCS1D01G349500 chr5A 82.171 258 33 11 4305 4557 445134161 445133912 5.110000e-50 209
40 TraesCS1D01G349500 chr2D 91.566 166 14 0 4706 4871 218046823 218046988 3.920000e-56 230
41 TraesCS1D01G349500 chr2D 91.358 162 14 0 4710 4871 299891554 299891715 6.560000e-54 222
42 TraesCS1D01G349500 chr2D 86.387 191 25 1 4710 4900 387193695 387193884 1.840000e-49 207
43 TraesCS1D01G349500 chr2D 82.186 247 33 10 4314 4557 430625744 430625506 8.550000e-48 202
44 TraesCS1D01G349500 chr2A 91.124 169 15 0 4706 4874 324615090 324614922 3.920000e-56 230
45 TraesCS1D01G349500 chr2B 83.740 246 30 8 4314 4557 508959623 508959386 1.830000e-54 224
46 TraesCS1D01G349500 chr7B 83.796 216 32 2 4339 4553 156706798 156706585 8.550000e-48 202
47 TraesCS1D01G349500 chr7B 81.743 241 33 9 4314 4552 297400711 297400480 1.850000e-44 191
48 TraesCS1D01G349500 chr7A 80.237 253 39 9 4302 4552 391906506 391906749 4.010000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G349500 chr1D 435750819 435755856 5037 False 9304.000000 9304 100.000000 1 5038 1 chr1D.!!$F2 5037
1 TraesCS1D01G349500 chr1A 533141984 533146221 4237 False 1797.000000 2822 92.522333 1 4177 3 chr1A.!!$F3 4176
2 TraesCS1D01G349500 chr1B 589065778 589070232 4454 False 977.166667 2464 92.600500 155 5038 6 chr1B.!!$F2 4883
3 TraesCS1D01G349500 chr4D 138703904 138705109 1205 True 327.500000 416 90.788000 4226 5038 2 chr4D.!!$R3 812
4 TraesCS1D01G349500 chr4A 415855910 415857478 1568 False 242.666667 337 94.354000 4226 5038 3 chr4A.!!$F2 812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
544 552 0.035343 GTGGAGGCTTGGTTAGGGTC 60.035 60.0 0.00 0.0 0.00 4.46 F
549 557 0.255033 GGCTTGGTTAGGGTCGGATT 59.745 55.0 0.00 0.0 0.00 3.01 F
637 645 0.320946 CCTTTGGCGTACCCTCGAAA 60.321 55.0 2.61 0.0 33.59 3.46 F
1347 1950 0.334676 TGAAATTCGGATTGCCCCCT 59.665 50.0 0.00 0.0 0.00 4.79 F
2086 2700 1.035139 AGTGGTTTCTGCTTGGCTTG 58.965 50.0 0.00 0.0 0.00 4.01 F
2824 3484 0.733566 CGTGCATGGTTGAATGGTGC 60.734 55.0 0.00 0.0 36.39 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 2478 0.875040 TTGTGCAAAAGCATGCCACG 60.875 50.000 15.66 1.5 45.83 4.94 R
2069 2683 1.484038 AACAAGCCAAGCAGAAACCA 58.516 45.000 0.00 0.0 0.00 3.67 R
2141 2755 7.214381 CCAGTTGATTCCATGCATATTTTGAT 58.786 34.615 0.00 0.0 0.00 2.57 R
2821 3481 0.035739 TAGGAAAAGACCCACCGCAC 59.964 55.000 0.00 0.0 0.00 5.34 R
3599 4279 0.169009 GAGAACTGAACGGCATTGCC 59.831 55.000 18.10 18.1 46.75 4.52 R
4656 5806 1.980052 CAGGCCTCTGGTCCGTTTA 59.020 57.895 0.00 0.0 37.36 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.938280 GTTGTGAATTAGCATGTACCCTATATA 57.062 33.333 0.00 0.00 0.00 0.86
66 67 9.523730 GACAAAAACGGTTTGAAATATTTATGC 57.476 29.630 17.61 0.00 33.83 3.14
75 76 9.076596 GGTTTGAAATATTTATGCAGAGTTCAC 57.923 33.333 0.00 0.00 0.00 3.18
77 78 7.015226 TGAAATATTTATGCAGAGTTCACGG 57.985 36.000 0.00 0.00 0.00 4.94
121 122 1.336148 ACACACCGCATCAAATTGCAG 60.336 47.619 0.00 0.00 42.91 4.41
128 129 2.098607 CGCATCAAATTGCAGGTGATCT 59.901 45.455 6.02 0.00 42.91 2.75
137 138 3.421919 TGCAGGTGATCTCAATGACAA 57.578 42.857 0.00 0.00 0.00 3.18
147 148 2.802247 TCTCAATGACAACTTGCTCACG 59.198 45.455 0.00 0.00 0.00 4.35
163 164 5.166398 TGCTCACGCATAGAAGATATGATG 58.834 41.667 0.00 0.00 42.25 3.07
173 174 7.877097 GCATAGAAGATATGATGTCCAAGAGTT 59.123 37.037 0.00 0.00 0.00 3.01
176 177 8.774546 AGAAGATATGATGTCCAAGAGTTAGA 57.225 34.615 0.00 0.00 0.00 2.10
188 189 8.621286 TGTCCAAGAGTTAGAGAATTGTTTTTC 58.379 33.333 0.00 0.00 0.00 2.29
189 190 8.621286 GTCCAAGAGTTAGAGAATTGTTTTTCA 58.379 33.333 0.00 0.00 0.00 2.69
290 298 4.851010 TGCATGCTTTACATTGATCATCG 58.149 39.130 20.33 0.00 36.64 3.84
293 301 5.731406 GCATGCTTTACATTGATCATCGTGT 60.731 40.000 11.37 5.24 36.64 4.49
334 342 3.507103 TGTGGCATAATGTTGACATGC 57.493 42.857 0.00 0.00 43.43 4.06
401 409 8.552034 ACAAAATGAGAAGAGAAGTTTTACTCG 58.448 33.333 0.00 0.00 38.08 4.18
402 410 7.659652 AAATGAGAAGAGAAGTTTTACTCGG 57.340 36.000 0.00 0.00 38.08 4.63
403 411 5.135508 TGAGAAGAGAAGTTTTACTCGGG 57.864 43.478 0.00 0.00 38.08 5.14
404 412 3.927758 GAGAAGAGAAGTTTTACTCGGGC 59.072 47.826 0.00 0.00 38.08 6.13
405 413 2.764439 AGAGAAGTTTTACTCGGGCC 57.236 50.000 0.00 0.00 38.08 5.80
406 414 1.975680 AGAGAAGTTTTACTCGGGCCA 59.024 47.619 4.39 0.00 38.08 5.36
407 415 2.028020 AGAGAAGTTTTACTCGGGCCAG 60.028 50.000 4.39 0.00 38.08 4.85
408 416 1.975680 AGAAGTTTTACTCGGGCCAGA 59.024 47.619 4.39 4.83 0.00 3.86
409 417 2.572104 AGAAGTTTTACTCGGGCCAGAT 59.428 45.455 5.89 0.00 0.00 2.90
410 418 2.693267 AGTTTTACTCGGGCCAGATC 57.307 50.000 5.89 0.00 0.00 2.75
411 419 1.906574 AGTTTTACTCGGGCCAGATCA 59.093 47.619 5.89 0.00 0.00 2.92
412 420 2.304761 AGTTTTACTCGGGCCAGATCAA 59.695 45.455 5.89 0.36 0.00 2.57
413 421 2.678336 GTTTTACTCGGGCCAGATCAAG 59.322 50.000 5.89 0.00 0.00 3.02
414 422 1.860641 TTACTCGGGCCAGATCAAGA 58.139 50.000 5.89 0.00 0.00 3.02
415 423 1.860641 TACTCGGGCCAGATCAAGAA 58.139 50.000 5.89 0.00 0.00 2.52
416 424 0.250513 ACTCGGGCCAGATCAAGAAC 59.749 55.000 5.89 0.00 0.00 3.01
417 425 0.807667 CTCGGGCCAGATCAAGAACG 60.808 60.000 5.89 0.00 0.00 3.95
418 426 1.218047 CGGGCCAGATCAAGAACGA 59.782 57.895 4.39 0.00 0.00 3.85
419 427 0.807667 CGGGCCAGATCAAGAACGAG 60.808 60.000 4.39 0.00 0.00 4.18
420 428 0.250513 GGGCCAGATCAAGAACGAGT 59.749 55.000 4.39 0.00 0.00 4.18
421 429 1.363744 GGCCAGATCAAGAACGAGTG 58.636 55.000 0.00 0.00 0.00 3.51
422 430 1.363744 GCCAGATCAAGAACGAGTGG 58.636 55.000 0.00 0.00 0.00 4.00
423 431 2.009042 GCCAGATCAAGAACGAGTGGG 61.009 57.143 0.00 0.00 0.00 4.61
424 432 1.550524 CCAGATCAAGAACGAGTGGGA 59.449 52.381 0.00 0.00 0.00 4.37
425 433 2.169352 CCAGATCAAGAACGAGTGGGAT 59.831 50.000 0.00 0.00 0.00 3.85
426 434 3.384789 CCAGATCAAGAACGAGTGGGATA 59.615 47.826 0.00 0.00 0.00 2.59
427 435 4.363999 CAGATCAAGAACGAGTGGGATAC 58.636 47.826 0.00 0.00 0.00 2.24
428 436 2.933495 TCAAGAACGAGTGGGATACG 57.067 50.000 0.00 0.00 37.60 3.06
429 437 1.475280 TCAAGAACGAGTGGGATACGG 59.525 52.381 0.00 0.00 37.60 4.02
430 438 1.203994 CAAGAACGAGTGGGATACGGT 59.796 52.381 0.00 0.00 37.60 4.83
431 439 0.815734 AGAACGAGTGGGATACGGTG 59.184 55.000 0.00 0.00 37.60 4.94
432 440 0.179119 GAACGAGTGGGATACGGTGG 60.179 60.000 0.00 0.00 37.60 4.61
433 441 0.612732 AACGAGTGGGATACGGTGGA 60.613 55.000 0.00 0.00 37.60 4.02
434 442 1.318158 ACGAGTGGGATACGGTGGAC 61.318 60.000 0.00 0.00 37.60 4.02
435 443 1.317431 CGAGTGGGATACGGTGGACA 61.317 60.000 0.00 0.00 37.60 4.02
436 444 1.120530 GAGTGGGATACGGTGGACAT 58.879 55.000 0.00 0.00 37.60 3.06
437 445 0.830648 AGTGGGATACGGTGGACATG 59.169 55.000 0.00 0.00 37.60 3.21
438 446 0.828022 GTGGGATACGGTGGACATGA 59.172 55.000 0.00 0.00 37.60 3.07
439 447 1.416401 GTGGGATACGGTGGACATGAT 59.584 52.381 0.00 0.00 37.60 2.45
440 448 1.691976 TGGGATACGGTGGACATGATC 59.308 52.381 0.00 0.00 37.60 2.92
441 449 1.971357 GGGATACGGTGGACATGATCT 59.029 52.381 0.00 0.00 37.60 2.75
442 450 2.368875 GGGATACGGTGGACATGATCTT 59.631 50.000 0.00 0.00 37.60 2.40
443 451 3.555168 GGGATACGGTGGACATGATCTTC 60.555 52.174 0.00 0.00 37.60 2.87
444 452 2.863401 TACGGTGGACATGATCTTCG 57.137 50.000 0.00 0.19 0.00 3.79
445 453 1.182667 ACGGTGGACATGATCTTCGA 58.817 50.000 0.00 0.00 0.00 3.71
446 454 1.135083 ACGGTGGACATGATCTTCGAC 60.135 52.381 0.00 0.00 0.00 4.20
447 455 1.560923 GGTGGACATGATCTTCGACG 58.439 55.000 0.00 0.00 0.00 5.12
448 456 1.134367 GGTGGACATGATCTTCGACGA 59.866 52.381 0.00 0.00 0.00 4.20
449 457 2.186076 GTGGACATGATCTTCGACGAC 58.814 52.381 0.00 0.00 0.00 4.34
450 458 2.092323 TGGACATGATCTTCGACGACT 58.908 47.619 0.00 0.00 0.00 4.18
451 459 2.492088 TGGACATGATCTTCGACGACTT 59.508 45.455 0.00 0.00 0.00 3.01
452 460 2.854777 GGACATGATCTTCGACGACTTG 59.145 50.000 0.00 0.00 0.00 3.16
453 461 3.427638 GGACATGATCTTCGACGACTTGA 60.428 47.826 0.00 0.00 0.00 3.02
454 462 3.763902 ACATGATCTTCGACGACTTGAG 58.236 45.455 0.00 0.00 0.00 3.02
455 463 2.921634 TGATCTTCGACGACTTGAGG 57.078 50.000 0.00 0.00 0.00 3.86
456 464 2.433436 TGATCTTCGACGACTTGAGGA 58.567 47.619 0.00 0.00 0.00 3.71
457 465 2.161808 TGATCTTCGACGACTTGAGGAC 59.838 50.000 0.00 0.00 0.00 3.85
458 466 1.893544 TCTTCGACGACTTGAGGACT 58.106 50.000 0.00 0.00 0.00 3.85
459 467 2.228059 TCTTCGACGACTTGAGGACTT 58.772 47.619 0.00 0.00 0.00 3.01
460 468 2.031069 TCTTCGACGACTTGAGGACTTG 60.031 50.000 0.00 0.00 0.00 3.16
461 469 0.596577 TCGACGACTTGAGGACTTGG 59.403 55.000 0.00 0.00 0.00 3.61
462 470 0.388649 CGACGACTTGAGGACTTGGG 60.389 60.000 0.00 0.00 0.00 4.12
463 471 0.670854 GACGACTTGAGGACTTGGGC 60.671 60.000 0.00 0.00 0.00 5.36
464 472 1.122019 ACGACTTGAGGACTTGGGCT 61.122 55.000 0.00 0.00 0.00 5.19
465 473 0.895530 CGACTTGAGGACTTGGGCTA 59.104 55.000 0.00 0.00 0.00 3.93
466 474 1.404315 CGACTTGAGGACTTGGGCTAC 60.404 57.143 0.00 0.00 0.00 3.58
467 475 0.608640 ACTTGAGGACTTGGGCTACG 59.391 55.000 0.00 0.00 0.00 3.51
468 476 0.895530 CTTGAGGACTTGGGCTACGA 59.104 55.000 0.00 0.00 0.00 3.43
469 477 0.606604 TTGAGGACTTGGGCTACGAC 59.393 55.000 0.00 0.00 0.00 4.34
470 478 0.541063 TGAGGACTTGGGCTACGACA 60.541 55.000 0.00 0.00 0.00 4.35
471 479 0.173708 GAGGACTTGGGCTACGACAG 59.826 60.000 0.00 0.00 0.00 3.51
472 480 1.218316 GGACTTGGGCTACGACAGG 59.782 63.158 0.00 0.00 0.00 4.00
473 481 1.255667 GGACTTGGGCTACGACAGGA 61.256 60.000 0.00 0.00 0.00 3.86
474 482 0.173708 GACTTGGGCTACGACAGGAG 59.826 60.000 0.00 0.00 0.00 3.69
475 483 1.153549 CTTGGGCTACGACAGGAGC 60.154 63.158 0.00 0.00 38.00 4.70
476 484 2.890847 CTTGGGCTACGACAGGAGCG 62.891 65.000 0.00 0.00 39.72 5.03
477 485 3.450115 GGGCTACGACAGGAGCGT 61.450 66.667 0.00 0.00 45.01 5.07
478 486 2.572284 GGCTACGACAGGAGCGTT 59.428 61.111 0.00 0.00 42.62 4.84
479 487 1.080025 GGCTACGACAGGAGCGTTT 60.080 57.895 0.00 0.00 42.62 3.60
480 488 1.352156 GGCTACGACAGGAGCGTTTG 61.352 60.000 0.00 0.00 42.62 2.93
481 489 1.352156 GCTACGACAGGAGCGTTTGG 61.352 60.000 0.00 0.00 42.62 3.28
482 490 0.736325 CTACGACAGGAGCGTTTGGG 60.736 60.000 0.00 0.00 42.62 4.12
483 491 2.162338 TACGACAGGAGCGTTTGGGG 62.162 60.000 0.00 0.00 42.62 4.96
484 492 2.747686 GACAGGAGCGTTTGGGGA 59.252 61.111 0.00 0.00 0.00 4.81
485 493 1.072505 GACAGGAGCGTTTGGGGAA 59.927 57.895 0.00 0.00 0.00 3.97
486 494 1.228154 ACAGGAGCGTTTGGGGAAC 60.228 57.895 0.00 0.00 34.82 3.62
487 495 1.228124 CAGGAGCGTTTGGGGAACA 60.228 57.895 0.00 0.00 38.18 3.18
488 496 0.821711 CAGGAGCGTTTGGGGAACAA 60.822 55.000 0.00 0.00 38.18 2.83
489 497 0.822121 AGGAGCGTTTGGGGAACAAC 60.822 55.000 0.00 0.00 39.19 3.32
490 498 1.104577 GGAGCGTTTGGGGAACAACA 61.105 55.000 0.00 0.00 39.19 3.33
491 499 0.958822 GAGCGTTTGGGGAACAACAT 59.041 50.000 0.00 0.00 39.19 2.71
492 500 0.673437 AGCGTTTGGGGAACAACATG 59.327 50.000 0.00 0.00 39.19 3.21
493 501 0.387565 GCGTTTGGGGAACAACATGT 59.612 50.000 0.00 0.00 39.19 3.21
494 502 1.609555 GCGTTTGGGGAACAACATGTA 59.390 47.619 0.00 0.00 39.19 2.29
495 503 2.230266 GCGTTTGGGGAACAACATGTAT 59.770 45.455 0.00 0.00 39.19 2.29
496 504 3.672241 GCGTTTGGGGAACAACATGTATC 60.672 47.826 0.00 0.00 39.19 2.24
497 505 3.756434 CGTTTGGGGAACAACATGTATCT 59.244 43.478 0.00 0.00 39.19 1.98
498 506 4.379394 CGTTTGGGGAACAACATGTATCTG 60.379 45.833 0.00 0.00 39.19 2.90
499 507 4.649267 TTGGGGAACAACATGTATCTGA 57.351 40.909 0.00 0.00 33.18 3.27
500 508 4.220693 TGGGGAACAACATGTATCTGAG 57.779 45.455 0.00 0.00 0.00 3.35
501 509 3.587061 TGGGGAACAACATGTATCTGAGT 59.413 43.478 0.00 0.00 0.00 3.41
502 510 4.780554 TGGGGAACAACATGTATCTGAGTA 59.219 41.667 0.00 0.00 0.00 2.59
503 511 5.104941 TGGGGAACAACATGTATCTGAGTAG 60.105 44.000 0.00 0.00 0.00 2.57
504 512 5.104900 GGGGAACAACATGTATCTGAGTAGT 60.105 44.000 0.00 0.00 0.00 2.73
505 513 6.097839 GGGGAACAACATGTATCTGAGTAGTA 59.902 42.308 0.00 0.00 0.00 1.82
506 514 7.203910 GGGAACAACATGTATCTGAGTAGTAG 58.796 42.308 0.00 0.00 0.00 2.57
507 515 7.068348 GGGAACAACATGTATCTGAGTAGTAGA 59.932 40.741 0.00 0.00 0.00 2.59
508 516 8.132362 GGAACAACATGTATCTGAGTAGTAGAG 58.868 40.741 0.00 0.00 0.00 2.43
509 517 8.582657 AACAACATGTATCTGAGTAGTAGAGT 57.417 34.615 0.00 0.00 0.00 3.24
510 518 9.682465 AACAACATGTATCTGAGTAGTAGAGTA 57.318 33.333 0.00 0.00 0.00 2.59
511 519 9.332502 ACAACATGTATCTGAGTAGTAGAGTAG 57.667 37.037 0.00 0.00 0.00 2.57
512 520 7.972832 ACATGTATCTGAGTAGTAGAGTAGC 57.027 40.000 0.00 0.00 0.00 3.58
513 521 6.647481 ACATGTATCTGAGTAGTAGAGTAGCG 59.353 42.308 0.00 0.00 0.00 4.26
514 522 6.159299 TGTATCTGAGTAGTAGAGTAGCGT 57.841 41.667 0.00 0.00 0.00 5.07
515 523 5.984323 TGTATCTGAGTAGTAGAGTAGCGTG 59.016 44.000 0.00 0.00 0.00 5.34
516 524 4.732672 TCTGAGTAGTAGAGTAGCGTGA 57.267 45.455 0.00 0.00 0.00 4.35
517 525 4.684877 TCTGAGTAGTAGAGTAGCGTGAG 58.315 47.826 0.00 0.00 0.00 3.51
518 526 3.794717 TGAGTAGTAGAGTAGCGTGAGG 58.205 50.000 0.00 0.00 0.00 3.86
519 527 3.450096 TGAGTAGTAGAGTAGCGTGAGGA 59.550 47.826 0.00 0.00 0.00 3.71
520 528 4.053295 GAGTAGTAGAGTAGCGTGAGGAG 58.947 52.174 0.00 0.00 0.00 3.69
521 529 3.451902 AGTAGTAGAGTAGCGTGAGGAGT 59.548 47.826 0.00 0.00 0.00 3.85
522 530 2.634600 AGTAGAGTAGCGTGAGGAGTG 58.365 52.381 0.00 0.00 0.00 3.51
523 531 1.671845 GTAGAGTAGCGTGAGGAGTGG 59.328 57.143 0.00 0.00 0.00 4.00
524 532 0.328592 AGAGTAGCGTGAGGAGTGGA 59.671 55.000 0.00 0.00 0.00 4.02
525 533 0.736053 GAGTAGCGTGAGGAGTGGAG 59.264 60.000 0.00 0.00 0.00 3.86
526 534 0.038455 AGTAGCGTGAGGAGTGGAGT 59.962 55.000 0.00 0.00 0.00 3.85
527 535 0.171455 GTAGCGTGAGGAGTGGAGTG 59.829 60.000 0.00 0.00 0.00 3.51
528 536 0.965866 TAGCGTGAGGAGTGGAGTGG 60.966 60.000 0.00 0.00 0.00 4.00
529 537 2.276116 GCGTGAGGAGTGGAGTGGA 61.276 63.158 0.00 0.00 0.00 4.02
530 538 1.886585 CGTGAGGAGTGGAGTGGAG 59.113 63.158 0.00 0.00 0.00 3.86
531 539 1.599606 CGTGAGGAGTGGAGTGGAGG 61.600 65.000 0.00 0.00 0.00 4.30
532 540 1.610673 TGAGGAGTGGAGTGGAGGC 60.611 63.158 0.00 0.00 0.00 4.70
533 541 1.305718 GAGGAGTGGAGTGGAGGCT 60.306 63.158 0.00 0.00 0.00 4.58
534 542 0.907230 GAGGAGTGGAGTGGAGGCTT 60.907 60.000 0.00 0.00 0.00 4.35
535 543 1.197430 AGGAGTGGAGTGGAGGCTTG 61.197 60.000 0.00 0.00 0.00 4.01
536 544 1.298014 GAGTGGAGTGGAGGCTTGG 59.702 63.158 0.00 0.00 0.00 3.61
537 545 1.462238 AGTGGAGTGGAGGCTTGGT 60.462 57.895 0.00 0.00 0.00 3.67
538 546 1.062488 AGTGGAGTGGAGGCTTGGTT 61.062 55.000 0.00 0.00 0.00 3.67
539 547 0.690762 GTGGAGTGGAGGCTTGGTTA 59.309 55.000 0.00 0.00 0.00 2.85
540 548 0.984230 TGGAGTGGAGGCTTGGTTAG 59.016 55.000 0.00 0.00 0.00 2.34
541 549 0.253327 GGAGTGGAGGCTTGGTTAGG 59.747 60.000 0.00 0.00 0.00 2.69
542 550 0.253327 GAGTGGAGGCTTGGTTAGGG 59.747 60.000 0.00 0.00 0.00 3.53
543 551 0.475828 AGTGGAGGCTTGGTTAGGGT 60.476 55.000 0.00 0.00 0.00 4.34
544 552 0.035343 GTGGAGGCTTGGTTAGGGTC 60.035 60.000 0.00 0.00 0.00 4.46
545 553 1.221021 GGAGGCTTGGTTAGGGTCG 59.779 63.158 0.00 0.00 0.00 4.79
546 554 1.221021 GAGGCTTGGTTAGGGTCGG 59.779 63.158 0.00 0.00 0.00 4.79
547 555 1.229400 AGGCTTGGTTAGGGTCGGA 60.229 57.895 0.00 0.00 0.00 4.55
548 556 0.620700 AGGCTTGGTTAGGGTCGGAT 60.621 55.000 0.00 0.00 0.00 4.18
549 557 0.255033 GGCTTGGTTAGGGTCGGATT 59.745 55.000 0.00 0.00 0.00 3.01
550 558 1.379527 GCTTGGTTAGGGTCGGATTG 58.620 55.000 0.00 0.00 0.00 2.67
551 559 1.339727 GCTTGGTTAGGGTCGGATTGT 60.340 52.381 0.00 0.00 0.00 2.71
552 560 2.356135 CTTGGTTAGGGTCGGATTGTG 58.644 52.381 0.00 0.00 0.00 3.33
553 561 1.646912 TGGTTAGGGTCGGATTGTGA 58.353 50.000 0.00 0.00 0.00 3.58
554 562 1.276989 TGGTTAGGGTCGGATTGTGAC 59.723 52.381 0.00 0.00 35.60 3.67
555 563 1.553704 GGTTAGGGTCGGATTGTGACT 59.446 52.381 0.00 0.00 36.58 3.41
556 564 2.418334 GGTTAGGGTCGGATTGTGACTC 60.418 54.545 0.00 0.00 37.09 3.36
557 565 3.383162 AGGGTCGGATTGTGACTCT 57.617 52.632 0.00 0.00 42.30 3.24
558 566 1.645710 AGGGTCGGATTGTGACTCTT 58.354 50.000 0.00 0.00 44.70 2.85
559 567 2.816411 AGGGTCGGATTGTGACTCTTA 58.184 47.619 0.00 0.00 44.70 2.10
560 568 3.170717 AGGGTCGGATTGTGACTCTTAA 58.829 45.455 0.00 0.00 44.70 1.85
561 569 3.056035 AGGGTCGGATTGTGACTCTTAAC 60.056 47.826 0.00 0.00 44.70 2.01
562 570 3.259902 GGTCGGATTGTGACTCTTAACC 58.740 50.000 0.00 0.00 36.58 2.85
563 571 3.306502 GGTCGGATTGTGACTCTTAACCA 60.307 47.826 0.00 0.00 36.58 3.67
564 572 3.927142 GTCGGATTGTGACTCTTAACCAG 59.073 47.826 0.00 0.00 33.54 4.00
565 573 2.673368 CGGATTGTGACTCTTAACCAGC 59.327 50.000 0.00 0.00 0.00 4.85
566 574 2.673368 GGATTGTGACTCTTAACCAGCG 59.327 50.000 0.00 0.00 0.00 5.18
567 575 1.508632 TTGTGACTCTTAACCAGCGC 58.491 50.000 0.00 0.00 0.00 5.92
568 576 0.679505 TGTGACTCTTAACCAGCGCT 59.320 50.000 2.64 2.64 0.00 5.92
569 577 1.890489 TGTGACTCTTAACCAGCGCTA 59.110 47.619 10.99 0.00 0.00 4.26
570 578 2.496070 TGTGACTCTTAACCAGCGCTAT 59.504 45.455 10.99 1.47 0.00 2.97
571 579 3.056107 TGTGACTCTTAACCAGCGCTATT 60.056 43.478 10.99 10.75 0.00 1.73
572 580 3.307242 GTGACTCTTAACCAGCGCTATTG 59.693 47.826 10.99 4.10 0.00 1.90
573 581 3.056107 TGACTCTTAACCAGCGCTATTGT 60.056 43.478 10.99 4.87 0.00 2.71
574 582 4.158949 TGACTCTTAACCAGCGCTATTGTA 59.841 41.667 10.99 0.00 0.00 2.41
575 583 5.080969 ACTCTTAACCAGCGCTATTGTAA 57.919 39.130 10.99 5.73 0.00 2.41
576 584 5.671493 ACTCTTAACCAGCGCTATTGTAAT 58.329 37.500 10.99 0.00 0.00 1.89
577 585 5.753921 ACTCTTAACCAGCGCTATTGTAATC 59.246 40.000 10.99 0.00 0.00 1.75
578 586 5.914033 TCTTAACCAGCGCTATTGTAATCT 58.086 37.500 10.99 0.00 0.00 2.40
579 587 5.983720 TCTTAACCAGCGCTATTGTAATCTC 59.016 40.000 10.99 0.00 0.00 2.75
580 588 4.408182 AACCAGCGCTATTGTAATCTCT 57.592 40.909 10.99 0.00 0.00 3.10
581 589 4.408182 ACCAGCGCTATTGTAATCTCTT 57.592 40.909 10.99 0.00 0.00 2.85
582 590 4.122776 ACCAGCGCTATTGTAATCTCTTG 58.877 43.478 10.99 0.00 0.00 3.02
583 591 4.122776 CCAGCGCTATTGTAATCTCTTGT 58.877 43.478 10.99 0.00 0.00 3.16
584 592 5.163447 ACCAGCGCTATTGTAATCTCTTGTA 60.163 40.000 10.99 0.00 0.00 2.41
585 593 5.175856 CCAGCGCTATTGTAATCTCTTGTAC 59.824 44.000 10.99 0.00 0.00 2.90
586 594 5.748630 CAGCGCTATTGTAATCTCTTGTACA 59.251 40.000 10.99 0.00 0.00 2.90
587 595 6.422100 CAGCGCTATTGTAATCTCTTGTACAT 59.578 38.462 10.99 0.00 30.59 2.29
588 596 7.595130 CAGCGCTATTGTAATCTCTTGTACATA 59.405 37.037 10.99 0.00 30.59 2.29
589 597 8.307483 AGCGCTATTGTAATCTCTTGTACATAT 58.693 33.333 8.99 0.00 30.59 1.78
590 598 8.926710 GCGCTATTGTAATCTCTTGTACATATT 58.073 33.333 0.00 0.00 30.59 1.28
617 625 8.380743 TCTCTCTTCTATAAAGCTAAGGTACG 57.619 38.462 0.00 0.00 0.00 3.67
618 626 6.968250 TCTCTTCTATAAAGCTAAGGTACGC 58.032 40.000 0.00 0.00 0.00 4.42
619 627 6.016443 TCTCTTCTATAAAGCTAAGGTACGCC 60.016 42.308 0.00 0.00 0.00 5.68
634 642 2.818274 GCCTTTGGCGTACCCTCG 60.818 66.667 0.00 0.00 39.62 4.63
635 643 2.975536 CCTTTGGCGTACCCTCGA 59.024 61.111 2.61 0.00 33.59 4.04
636 644 1.294138 CCTTTGGCGTACCCTCGAA 59.706 57.895 2.61 0.00 33.59 3.71
637 645 0.320946 CCTTTGGCGTACCCTCGAAA 60.321 55.000 2.61 0.00 33.59 3.46
638 646 1.515081 CTTTGGCGTACCCTCGAAAA 58.485 50.000 2.61 0.00 33.59 2.29
639 647 1.874872 CTTTGGCGTACCCTCGAAAAA 59.125 47.619 2.61 0.00 33.59 1.94
660 668 2.375173 ACGTTTTACTCGGTCCATCC 57.625 50.000 0.00 0.00 0.00 3.51
672 680 2.031157 CGGTCCATCCAGTTGTTGTTTC 60.031 50.000 0.00 0.00 35.57 2.78
676 684 2.350772 CCATCCAGTTGTTGTTTCTCGC 60.351 50.000 0.00 0.00 0.00 5.03
715 972 5.159273 ACCAAAAAGAAAAGTTTGCCAGA 57.841 34.783 0.00 0.00 34.13 3.86
718 975 6.149308 ACCAAAAAGAAAAGTTTGCCAGAAAG 59.851 34.615 0.00 0.00 34.13 2.62
779 1041 1.751927 CTCTGGCTGTCAATGGGCC 60.752 63.158 0.00 0.00 45.45 5.80
889 1470 1.754226 GACACCCAAAAACAGGCAGAA 59.246 47.619 0.00 0.00 0.00 3.02
893 1474 3.560896 CACCCAAAAACAGGCAGAAATTG 59.439 43.478 0.00 0.00 0.00 2.32
901 1482 0.962356 AGGCAGAAATTGGTGGAGCG 60.962 55.000 0.00 0.00 0.00 5.03
902 1483 1.508088 GCAGAAATTGGTGGAGCGG 59.492 57.895 0.00 0.00 0.00 5.52
903 1484 1.244019 GCAGAAATTGGTGGAGCGGT 61.244 55.000 0.00 0.00 0.00 5.68
904 1485 0.523072 CAGAAATTGGTGGAGCGGTG 59.477 55.000 0.00 0.00 0.00 4.94
905 1486 0.609131 AGAAATTGGTGGAGCGGTGG 60.609 55.000 0.00 0.00 0.00 4.61
906 1487 0.608035 GAAATTGGTGGAGCGGTGGA 60.608 55.000 0.00 0.00 0.00 4.02
907 1488 0.609131 AAATTGGTGGAGCGGTGGAG 60.609 55.000 0.00 0.00 0.00 3.86
908 1489 2.484287 AATTGGTGGAGCGGTGGAGG 62.484 60.000 0.00 0.00 0.00 4.30
1342 1945 1.538276 CGTGCTGAAATTCGGATTGC 58.462 50.000 5.91 0.00 0.00 3.56
1347 1950 0.334676 TGAAATTCGGATTGCCCCCT 59.665 50.000 0.00 0.00 0.00 4.79
1413 2026 4.510340 CGTACTGTTATTATGTTGGCCTCC 59.490 45.833 3.32 0.00 0.00 4.30
1414 2027 4.584638 ACTGTTATTATGTTGGCCTCCA 57.415 40.909 3.32 0.00 0.00 3.86
1415 2028 4.526970 ACTGTTATTATGTTGGCCTCCAG 58.473 43.478 3.32 1.29 33.81 3.86
1416 2029 3.287222 TGTTATTATGTTGGCCTCCAGC 58.713 45.455 3.32 0.00 42.60 4.85
1417 2030 3.053693 TGTTATTATGTTGGCCTCCAGCT 60.054 43.478 3.32 0.00 43.05 4.24
1418 2031 2.355010 ATTATGTTGGCCTCCAGCTC 57.645 50.000 3.32 0.00 43.05 4.09
1463 2076 1.643832 GTTGAATCGCTCCGGCATC 59.356 57.895 0.00 0.00 38.60 3.91
1522 2135 7.979444 TCTGTCGATTCTTGGAATTTTAAGT 57.021 32.000 0.00 0.00 0.00 2.24
1606 2219 6.586082 ACAATCATATGAAAAACAAAGGTCGC 59.414 34.615 9.99 0.00 0.00 5.19
1611 2224 1.849829 GAAAAACAAAGGTCGCGTTGG 59.150 47.619 5.77 0.00 0.00 3.77
1642 2255 9.112725 TGATGGTCTGTTATTTTAGATGACATG 57.887 33.333 0.00 0.00 0.00 3.21
1643 2256 7.320443 TGGTCTGTTATTTTAGATGACATGC 57.680 36.000 0.00 0.00 0.00 4.06
1689 2302 8.481974 TGGTGCAAAATTGAATATTGATTCTG 57.518 30.769 0.00 0.00 41.87 3.02
1771 2384 7.814107 ACATGCACAATTTTCGTAGAATCAATT 59.186 29.630 0.00 0.00 45.90 2.32
1788 2401 7.653311 AGAATCAATTTGTACAGGCTGAAAAAC 59.347 33.333 23.66 13.40 0.00 2.43
1844 2457 4.401925 GAGGCTTAATAACAGGATGCCAT 58.598 43.478 0.00 0.00 42.53 4.40
1861 2474 7.174772 AGGATGCCATAAAAATGGTTCAAAAAC 59.825 33.333 6.29 0.00 43.53 2.43
1865 2478 6.565060 GCCATAAAAATGGTTCAAAAACGACC 60.565 38.462 6.29 0.00 43.53 4.79
1928 2542 5.362430 CCTCCTAGAGCTAATCTGTCTTGTT 59.638 44.000 0.00 0.00 39.20 2.83
1951 2565 1.093159 CCAATTCTGTGGCAGAGCTC 58.907 55.000 5.27 5.27 41.75 4.09
1954 2568 2.818432 CAATTCTGTGGCAGAGCTCTTT 59.182 45.455 15.27 0.00 41.75 2.52
2006 2620 9.645059 TTAAGTTGATAATCTTGTCACTCTGAG 57.355 33.333 2.45 2.45 0.00 3.35
2007 2621 7.473735 AGTTGATAATCTTGTCACTCTGAGA 57.526 36.000 12.44 0.00 0.00 3.27
2008 2622 7.546358 AGTTGATAATCTTGTCACTCTGAGAG 58.454 38.462 12.44 8.15 35.52 3.20
2032 2646 5.827797 GTCCATTGCCTTGTATTATCCTTCA 59.172 40.000 0.00 0.00 0.00 3.02
2069 2683 6.037940 GTGTCATGCTTGTGATCATATCAAGT 59.962 38.462 19.85 4.79 41.69 3.16
2082 2696 4.701651 TCATATCAAGTGGTTTCTGCTTGG 59.298 41.667 0.00 0.00 39.80 3.61
2086 2700 1.035139 AGTGGTTTCTGCTTGGCTTG 58.965 50.000 0.00 0.00 0.00 4.01
2141 2755 7.174107 TCATAAAGATCAGTCATCTGTGTCA 57.826 36.000 0.00 0.00 41.47 3.58
2163 2777 7.707464 TGTCATCAAAATATGCATGGAATCAAC 59.293 33.333 10.16 0.00 0.00 3.18
2665 3325 4.858692 CAGCTTAAATAAATGCGTTGCTGT 59.141 37.500 13.81 0.00 40.03 4.40
2713 3373 9.535170 TGGGTTAATAACATGAGAACCAAAATA 57.465 29.630 0.00 0.00 41.15 1.40
2821 3481 0.887247 TTCCGTGCATGGTTGAATGG 59.113 50.000 24.24 0.00 38.79 3.16
2824 3484 0.733566 CGTGCATGGTTGAATGGTGC 60.734 55.000 0.00 0.00 36.39 5.01
2839 3499 1.228154 GTGCGGTGGGTCTTTTCCT 60.228 57.895 0.00 0.00 0.00 3.36
2842 3502 1.353022 TGCGGTGGGTCTTTTCCTATT 59.647 47.619 0.00 0.00 0.00 1.73
2853 3513 6.041296 GGGTCTTTTCCTATTCATGATTGCAT 59.959 38.462 0.00 0.00 34.29 3.96
2943 3603 9.877178 AAATAAGTTAGTGTGGATGACTCTTAG 57.123 33.333 0.00 0.00 30.90 2.18
3004 3684 4.714632 ACACTTTAAGTTGCAGCTTCCTA 58.285 39.130 19.79 3.96 0.00 2.94
3084 3764 6.560253 TTTATCTTGAACCTCTTTGACAGC 57.440 37.500 0.00 0.00 0.00 4.40
3086 3766 2.172505 TCTTGAACCTCTTTGACAGCCA 59.827 45.455 0.00 0.00 0.00 4.75
3109 3789 4.476846 ACCCCAGACATACCAAATGATGTA 59.523 41.667 0.00 0.00 36.42 2.29
3158 3838 1.283793 CGTTCTTTGGTGGCTGCTG 59.716 57.895 0.00 0.00 0.00 4.41
3199 3879 7.928307 TTTTTCTTCTTCTCTCATACCCATG 57.072 36.000 0.00 0.00 0.00 3.66
3214 3894 6.764085 TCATACCCATGTACTATTTCCAAACG 59.236 38.462 0.00 0.00 33.57 3.60
3217 3897 5.876460 ACCCATGTACTATTTCCAAACGTAC 59.124 40.000 0.00 0.00 32.87 3.67
3220 3900 3.925913 TGTACTATTTCCAAACGTACGCC 59.074 43.478 16.72 0.00 33.96 5.68
3340 4020 2.753966 CGTCCCATTTGCGCTCCAG 61.754 63.158 9.73 0.00 0.00 3.86
3371 4051 4.530710 TGTATCCAGTGGTGTACAGAAC 57.469 45.455 19.46 0.00 0.00 3.01
3510 4190 5.580691 TCTCAATGTAAATTACACTCGGCAG 59.419 40.000 8.12 0.10 42.23 4.85
3518 4198 3.328382 TTACACTCGGCAGCTTACAAT 57.672 42.857 0.00 0.00 0.00 2.71
3645 4325 1.368019 CAACTTGACGTGTGCTGCG 60.368 57.895 0.00 0.00 0.00 5.18
3697 4377 5.337578 TGAAATAAAACTAATGCCCCTGC 57.662 39.130 0.00 0.00 38.26 4.85
3762 4442 0.609151 TGATGGGGTTTTGCATGCAG 59.391 50.000 21.50 0.00 0.00 4.41
3865 4545 5.568685 TTGTAACTTTTGCACTGCACTTA 57.431 34.783 2.26 0.00 38.71 2.24
3884 4564 6.968904 GCACTTACACTTGATATTCCATTGTG 59.031 38.462 0.00 0.00 0.00 3.33
3892 4572 7.332430 CACTTGATATTCCATTGTGCATTTGTT 59.668 33.333 0.00 0.00 0.00 2.83
4211 4891 0.178926 TTGGTACTTCCTCCGTCCCA 60.179 55.000 0.00 0.00 37.07 4.37
4235 4945 7.228706 CCAAAAGTAAAGTTGTAGAGTGGATGT 59.771 37.037 0.00 0.00 0.00 3.06
4421 5498 9.773328 CAACACCTACAATGTCATATTAGTTTG 57.227 33.333 0.00 0.00 0.00 2.93
4561 5639 9.120538 AGAACTTCAAGTATTTTGAAACTAGCA 57.879 29.630 0.00 0.00 37.89 3.49
4571 5649 9.262472 GTATTTTGAAACTAGCAATTGTAGACG 57.738 33.333 16.84 2.77 0.00 4.18
4616 5766 8.992073 GTTTTAACAGGAGAAAAGGATTACGTA 58.008 33.333 0.00 0.00 0.00 3.57
4646 5796 5.874897 TGTAAGTTTGTGTAGGTGTAGGT 57.125 39.130 0.00 0.00 0.00 3.08
4686 5836 1.077993 AGAGGCCTGGTCAACTAGACT 59.922 52.381 12.00 0.00 46.72 3.24
4687 5837 1.205893 GAGGCCTGGTCAACTAGACTG 59.794 57.143 12.00 0.00 46.72 3.51
4688 5838 0.391793 GGCCTGGTCAACTAGACTGC 60.392 60.000 0.00 0.00 46.72 4.40
4689 5839 0.321671 GCCTGGTCAACTAGACTGCA 59.678 55.000 0.00 0.00 46.72 4.41
4690 5840 1.941668 GCCTGGTCAACTAGACTGCAC 60.942 57.143 0.00 0.00 46.72 4.57
4691 5841 1.620819 CCTGGTCAACTAGACTGCACT 59.379 52.381 0.00 0.00 46.72 4.40
4692 5842 2.353208 CCTGGTCAACTAGACTGCACTC 60.353 54.545 0.00 0.00 46.72 3.51
4693 5843 2.560542 CTGGTCAACTAGACTGCACTCT 59.439 50.000 0.00 1.37 46.72 3.24
4694 5844 2.965831 TGGTCAACTAGACTGCACTCTT 59.034 45.455 0.00 0.00 46.72 2.85
4695 5845 4.149598 TGGTCAACTAGACTGCACTCTTA 58.850 43.478 0.00 0.00 46.72 2.10
4710 5860 9.355916 ACTGCACTCTTATGACAAGACTATATA 57.644 33.333 0.00 0.00 0.00 0.86
4711 5861 9.619316 CTGCACTCTTATGACAAGACTATATAC 57.381 37.037 0.00 0.00 0.00 1.47
4712 5862 9.355916 TGCACTCTTATGACAAGACTATATACT 57.644 33.333 0.00 0.00 0.00 2.12
4723 5873 9.699703 GACAAGACTATATACTTCCTTCATTCC 57.300 37.037 0.00 0.00 0.00 3.01
4724 5874 9.440761 ACAAGACTATATACTTCCTTCATTCCT 57.559 33.333 0.00 0.00 0.00 3.36
4812 5962 5.564550 AGTGTAGATCCACTCATTTTGCTT 58.435 37.500 0.00 0.00 41.84 3.91
4813 5963 5.645497 AGTGTAGATCCACTCATTTTGCTTC 59.355 40.000 0.00 0.00 41.84 3.86
4824 5974 6.311445 CACTCATTTTGCTTCGTATGTAGTCT 59.689 38.462 0.00 0.00 0.00 3.24
4831 5981 5.168569 TGCTTCGTATGTAGTCTCTTTTGG 58.831 41.667 0.00 0.00 0.00 3.28
4833 5983 5.867716 GCTTCGTATGTAGTCTCTTTTGGAA 59.132 40.000 0.00 0.00 0.00 3.53
4842 5992 8.287439 TGTAGTCTCTTTTGGAATCTCTAGAG 57.713 38.462 13.98 13.98 0.00 2.43
4862 6012 9.504708 TCTAGAGAGACTTATATTTAGGAACGG 57.495 37.037 0.00 0.00 0.00 4.44
4863 6013 9.504708 CTAGAGAGACTTATATTTAGGAACGGA 57.495 37.037 0.00 0.00 0.00 4.69
4864 6014 8.398878 AGAGAGACTTATATTTAGGAACGGAG 57.601 38.462 0.00 0.00 0.00 4.63
4865 6015 7.449086 AGAGAGACTTATATTTAGGAACGGAGG 59.551 40.741 0.00 0.00 0.00 4.30
4866 6016 6.494146 AGAGACTTATATTTAGGAACGGAGGG 59.506 42.308 0.00 0.00 0.00 4.30
4867 6017 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4868 6018 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4869 6019 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4870 6020 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4871 6021 7.954620 ACTTATATTTAGGAACGGAGGGAGTAT 59.045 37.037 0.00 0.00 0.00 2.12
4872 6022 9.471702 CTTATATTTAGGAACGGAGGGAGTATA 57.528 37.037 0.00 0.00 0.00 1.47
4873 6023 9.827198 TTATATTTAGGAACGGAGGGAGTATAA 57.173 33.333 0.00 0.00 0.00 0.98
4874 6024 8.912614 ATATTTAGGAACGGAGGGAGTATAAT 57.087 34.615 0.00 0.00 0.00 1.28
4876 6026 7.530426 TTTAGGAACGGAGGGAGTATAATAC 57.470 40.000 0.00 0.00 0.00 1.89
4879 6029 5.715753 AGGAACGGAGGGAGTATAATACATC 59.284 44.000 0.00 0.00 0.00 3.06
4907 6057 2.931320 GCTGCAGTACTACACCCAGTTC 60.931 54.545 16.64 0.00 32.39 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.399089 CCGTTTTTGTCTGTTCCACGT 59.601 47.619 0.00 0.00 0.00 4.49
65 66 1.569479 GAAGTGGCCGTGAACTCTGC 61.569 60.000 0.00 0.00 0.00 4.26
66 67 0.249868 TGAAGTGGCCGTGAACTCTG 60.250 55.000 0.00 0.00 0.00 3.35
75 76 1.879380 TCAAACTCATTGAAGTGGCCG 59.121 47.619 0.00 0.00 44.94 6.13
96 97 4.545610 CAATTTGATGCGGTGTGTAGTTT 58.454 39.130 0.00 0.00 0.00 2.66
121 122 3.755378 AGCAAGTTGTCATTGAGATCACC 59.245 43.478 4.48 0.00 0.00 4.02
147 148 7.385267 ACTCTTGGACATCATATCTTCTATGC 58.615 38.462 0.00 0.00 0.00 3.14
163 164 8.621286 TGAAAAACAATTCTCTAACTCTTGGAC 58.379 33.333 0.00 0.00 0.00 4.02
188 189 6.980397 TGTCACTTGAGCATATATACACACTG 59.020 38.462 0.00 0.00 0.00 3.66
189 190 7.112452 TGTCACTTGAGCATATATACACACT 57.888 36.000 0.00 0.00 0.00 3.55
266 269 5.918576 CGATGATCAATGTAAAGCATGCAAT 59.081 36.000 21.98 10.57 37.96 3.56
267 270 5.163632 ACGATGATCAATGTAAAGCATGCAA 60.164 36.000 21.98 1.32 37.96 4.08
268 271 4.336153 ACGATGATCAATGTAAAGCATGCA 59.664 37.500 21.98 0.00 37.96 3.96
269 272 4.673761 CACGATGATCAATGTAAAGCATGC 59.326 41.667 10.51 10.51 37.96 4.06
270 273 5.813717 ACACGATGATCAATGTAAAGCATG 58.186 37.500 0.00 0.00 37.96 4.06
300 308 3.465742 TGCCACAAATAAAGCAAAGCA 57.534 38.095 0.00 0.00 30.97 3.91
301 309 6.092533 ACATTATGCCACAAATAAAGCAAAGC 59.907 34.615 0.00 0.00 38.99 3.51
302 310 7.599630 ACATTATGCCACAAATAAAGCAAAG 57.400 32.000 0.00 0.00 38.99 2.77
303 311 7.658982 TCAACATTATGCCACAAATAAAGCAAA 59.341 29.630 0.00 0.00 38.99 3.68
317 325 2.355756 AGTCGCATGTCAACATTATGCC 59.644 45.455 0.00 0.00 43.12 4.40
334 342 1.664016 GCACAACTGCCAAATGAGTCG 60.664 52.381 0.00 0.00 37.45 4.18
401 409 0.250513 ACTCGTTCTTGATCTGGCCC 59.749 55.000 0.00 0.00 0.00 5.80
402 410 1.363744 CACTCGTTCTTGATCTGGCC 58.636 55.000 0.00 0.00 0.00 5.36
403 411 1.363744 CCACTCGTTCTTGATCTGGC 58.636 55.000 0.00 0.00 0.00 4.85
404 412 1.550524 TCCCACTCGTTCTTGATCTGG 59.449 52.381 0.00 0.00 0.00 3.86
405 413 3.533606 ATCCCACTCGTTCTTGATCTG 57.466 47.619 0.00 0.00 0.00 2.90
406 414 3.066900 CGTATCCCACTCGTTCTTGATCT 59.933 47.826 0.00 0.00 0.00 2.75
407 415 3.372954 CGTATCCCACTCGTTCTTGATC 58.627 50.000 0.00 0.00 0.00 2.92
408 416 2.100916 CCGTATCCCACTCGTTCTTGAT 59.899 50.000 0.00 0.00 0.00 2.57
409 417 1.475280 CCGTATCCCACTCGTTCTTGA 59.525 52.381 0.00 0.00 0.00 3.02
410 418 1.203994 ACCGTATCCCACTCGTTCTTG 59.796 52.381 0.00 0.00 0.00 3.02
411 419 1.203994 CACCGTATCCCACTCGTTCTT 59.796 52.381 0.00 0.00 0.00 2.52
412 420 0.815734 CACCGTATCCCACTCGTTCT 59.184 55.000 0.00 0.00 0.00 3.01
413 421 0.179119 CCACCGTATCCCACTCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
414 422 0.612732 TCCACCGTATCCCACTCGTT 60.613 55.000 0.00 0.00 0.00 3.85
415 423 1.000521 TCCACCGTATCCCACTCGT 60.001 57.895 0.00 0.00 0.00 4.18
416 424 1.317431 TGTCCACCGTATCCCACTCG 61.317 60.000 0.00 0.00 0.00 4.18
417 425 1.120530 ATGTCCACCGTATCCCACTC 58.879 55.000 0.00 0.00 0.00 3.51
418 426 0.830648 CATGTCCACCGTATCCCACT 59.169 55.000 0.00 0.00 0.00 4.00
419 427 0.828022 TCATGTCCACCGTATCCCAC 59.172 55.000 0.00 0.00 0.00 4.61
420 428 1.691976 GATCATGTCCACCGTATCCCA 59.308 52.381 0.00 0.00 0.00 4.37
421 429 1.971357 AGATCATGTCCACCGTATCCC 59.029 52.381 0.00 0.00 0.00 3.85
422 430 3.654414 GAAGATCATGTCCACCGTATCC 58.346 50.000 0.00 0.00 0.00 2.59
423 431 3.004419 TCGAAGATCATGTCCACCGTATC 59.996 47.826 0.00 0.00 0.00 2.24
424 432 2.956333 TCGAAGATCATGTCCACCGTAT 59.044 45.455 0.00 0.00 0.00 3.06
425 433 2.098607 GTCGAAGATCATGTCCACCGTA 59.901 50.000 0.00 0.00 40.67 4.02
426 434 1.135083 GTCGAAGATCATGTCCACCGT 60.135 52.381 0.00 0.00 40.67 4.83
427 435 1.560923 GTCGAAGATCATGTCCACCG 58.439 55.000 0.00 0.00 40.67 4.94
428 436 1.134367 TCGTCGAAGATCATGTCCACC 59.866 52.381 0.00 0.00 40.67 4.61
429 437 2.159366 AGTCGTCGAAGATCATGTCCAC 60.159 50.000 3.90 0.00 40.67 4.02
430 438 2.092323 AGTCGTCGAAGATCATGTCCA 58.908 47.619 3.90 0.00 40.67 4.02
431 439 2.853731 AGTCGTCGAAGATCATGTCC 57.146 50.000 3.90 0.00 40.67 4.02
432 440 3.759418 TCAAGTCGTCGAAGATCATGTC 58.241 45.455 3.90 0.00 40.67 3.06
433 441 3.428180 CCTCAAGTCGTCGAAGATCATGT 60.428 47.826 3.90 0.00 40.67 3.21
434 442 3.111838 CCTCAAGTCGTCGAAGATCATG 58.888 50.000 3.90 4.70 40.67 3.07
435 443 3.017442 TCCTCAAGTCGTCGAAGATCAT 58.983 45.455 3.90 0.00 40.67 2.45
436 444 2.161808 GTCCTCAAGTCGTCGAAGATCA 59.838 50.000 3.90 0.00 40.67 2.92
437 445 2.420722 AGTCCTCAAGTCGTCGAAGATC 59.579 50.000 3.90 0.00 40.67 2.75
438 446 2.438411 AGTCCTCAAGTCGTCGAAGAT 58.562 47.619 3.90 0.00 40.67 2.40
439 447 1.893544 AGTCCTCAAGTCGTCGAAGA 58.106 50.000 0.00 0.00 0.00 2.87
440 448 2.320367 CAAGTCCTCAAGTCGTCGAAG 58.680 52.381 0.00 0.00 0.00 3.79
441 449 1.000607 CCAAGTCCTCAAGTCGTCGAA 60.001 52.381 0.00 0.00 0.00 3.71
442 450 0.596577 CCAAGTCCTCAAGTCGTCGA 59.403 55.000 0.00 0.00 0.00 4.20
443 451 0.388649 CCCAAGTCCTCAAGTCGTCG 60.389 60.000 0.00 0.00 0.00 5.12
444 452 0.670854 GCCCAAGTCCTCAAGTCGTC 60.671 60.000 0.00 0.00 0.00 4.20
445 453 1.122019 AGCCCAAGTCCTCAAGTCGT 61.122 55.000 0.00 0.00 0.00 4.34
446 454 0.895530 TAGCCCAAGTCCTCAAGTCG 59.104 55.000 0.00 0.00 0.00 4.18
447 455 1.404315 CGTAGCCCAAGTCCTCAAGTC 60.404 57.143 0.00 0.00 0.00 3.01
448 456 0.608640 CGTAGCCCAAGTCCTCAAGT 59.391 55.000 0.00 0.00 0.00 3.16
449 457 0.895530 TCGTAGCCCAAGTCCTCAAG 59.104 55.000 0.00 0.00 0.00 3.02
450 458 0.606604 GTCGTAGCCCAAGTCCTCAA 59.393 55.000 0.00 0.00 0.00 3.02
451 459 0.541063 TGTCGTAGCCCAAGTCCTCA 60.541 55.000 0.00 0.00 0.00 3.86
452 460 0.173708 CTGTCGTAGCCCAAGTCCTC 59.826 60.000 0.00 0.00 0.00 3.71
453 461 1.258445 CCTGTCGTAGCCCAAGTCCT 61.258 60.000 0.00 0.00 0.00 3.85
454 462 1.218316 CCTGTCGTAGCCCAAGTCC 59.782 63.158 0.00 0.00 0.00 3.85
455 463 0.173708 CTCCTGTCGTAGCCCAAGTC 59.826 60.000 0.00 0.00 0.00 3.01
456 464 1.889530 GCTCCTGTCGTAGCCCAAGT 61.890 60.000 0.00 0.00 32.40 3.16
457 465 1.153549 GCTCCTGTCGTAGCCCAAG 60.154 63.158 0.00 0.00 32.40 3.61
458 466 2.978824 GCTCCTGTCGTAGCCCAA 59.021 61.111 0.00 0.00 32.40 4.12
459 467 3.449227 CGCTCCTGTCGTAGCCCA 61.449 66.667 0.00 0.00 35.22 5.36
460 468 2.502692 AAACGCTCCTGTCGTAGCCC 62.503 60.000 0.00 0.00 39.48 5.19
461 469 1.080025 AAACGCTCCTGTCGTAGCC 60.080 57.895 0.00 0.00 39.48 3.93
462 470 1.352156 CCAAACGCTCCTGTCGTAGC 61.352 60.000 0.00 0.00 39.48 3.58
463 471 0.736325 CCCAAACGCTCCTGTCGTAG 60.736 60.000 0.00 0.00 39.48 3.51
464 472 1.290955 CCCAAACGCTCCTGTCGTA 59.709 57.895 0.00 0.00 39.48 3.43
465 473 2.030562 CCCAAACGCTCCTGTCGT 59.969 61.111 0.00 0.00 42.54 4.34
466 474 2.725203 TTCCCCAAACGCTCCTGTCG 62.725 60.000 0.00 0.00 0.00 4.35
467 475 1.072505 TTCCCCAAACGCTCCTGTC 59.927 57.895 0.00 0.00 0.00 3.51
468 476 1.228154 GTTCCCCAAACGCTCCTGT 60.228 57.895 0.00 0.00 0.00 4.00
469 477 0.821711 TTGTTCCCCAAACGCTCCTG 60.822 55.000 0.00 0.00 41.02 3.86
470 478 0.822121 GTTGTTCCCCAAACGCTCCT 60.822 55.000 0.00 0.00 41.02 3.69
471 479 1.104577 TGTTGTTCCCCAAACGCTCC 61.105 55.000 0.00 0.00 41.02 4.70
472 480 0.958822 ATGTTGTTCCCCAAACGCTC 59.041 50.000 0.00 0.00 41.02 5.03
473 481 0.673437 CATGTTGTTCCCCAAACGCT 59.327 50.000 0.00 0.00 41.02 5.07
474 482 0.387565 ACATGTTGTTCCCCAAACGC 59.612 50.000 0.00 0.00 41.02 4.84
475 483 3.756434 AGATACATGTTGTTCCCCAAACG 59.244 43.478 2.30 0.00 41.02 3.60
476 484 4.764823 TCAGATACATGTTGTTCCCCAAAC 59.235 41.667 2.30 0.00 38.43 2.93
477 485 4.991776 TCAGATACATGTTGTTCCCCAAA 58.008 39.130 2.30 0.00 34.07 3.28
478 486 4.042809 ACTCAGATACATGTTGTTCCCCAA 59.957 41.667 2.30 0.00 0.00 4.12
479 487 3.587061 ACTCAGATACATGTTGTTCCCCA 59.413 43.478 2.30 0.00 0.00 4.96
480 488 4.222124 ACTCAGATACATGTTGTTCCCC 57.778 45.455 2.30 0.00 0.00 4.81
481 489 5.978814 ACTACTCAGATACATGTTGTTCCC 58.021 41.667 2.30 0.00 0.00 3.97
482 490 7.997482 TCTACTACTCAGATACATGTTGTTCC 58.003 38.462 2.30 0.00 0.00 3.62
483 491 8.679100 ACTCTACTACTCAGATACATGTTGTTC 58.321 37.037 2.30 0.00 0.00 3.18
484 492 8.582657 ACTCTACTACTCAGATACATGTTGTT 57.417 34.615 2.30 0.00 0.00 2.83
485 493 9.332502 CTACTCTACTACTCAGATACATGTTGT 57.667 37.037 2.30 0.00 0.00 3.32
486 494 8.286800 GCTACTCTACTACTCAGATACATGTTG 58.713 40.741 2.30 0.00 0.00 3.33
487 495 7.171848 CGCTACTCTACTACTCAGATACATGTT 59.828 40.741 2.30 0.00 0.00 2.71
488 496 6.647481 CGCTACTCTACTACTCAGATACATGT 59.353 42.308 2.69 2.69 0.00 3.21
489 497 6.647481 ACGCTACTCTACTACTCAGATACATG 59.353 42.308 0.00 0.00 0.00 3.21
490 498 6.647481 CACGCTACTCTACTACTCAGATACAT 59.353 42.308 0.00 0.00 0.00 2.29
491 499 5.984323 CACGCTACTCTACTACTCAGATACA 59.016 44.000 0.00 0.00 0.00 2.29
492 500 6.215121 TCACGCTACTCTACTACTCAGATAC 58.785 44.000 0.00 0.00 0.00 2.24
493 501 6.402456 TCACGCTACTCTACTACTCAGATA 57.598 41.667 0.00 0.00 0.00 1.98
494 502 5.279255 TCACGCTACTCTACTACTCAGAT 57.721 43.478 0.00 0.00 0.00 2.90
495 503 4.441773 CCTCACGCTACTCTACTACTCAGA 60.442 50.000 0.00 0.00 0.00 3.27
496 504 3.805422 CCTCACGCTACTCTACTACTCAG 59.195 52.174 0.00 0.00 0.00 3.35
497 505 3.450096 TCCTCACGCTACTCTACTACTCA 59.550 47.826 0.00 0.00 0.00 3.41
498 506 4.053295 CTCCTCACGCTACTCTACTACTC 58.947 52.174 0.00 0.00 0.00 2.59
499 507 3.451902 ACTCCTCACGCTACTCTACTACT 59.548 47.826 0.00 0.00 0.00 2.57
500 508 3.556775 CACTCCTCACGCTACTCTACTAC 59.443 52.174 0.00 0.00 0.00 2.73
501 509 3.431905 CCACTCCTCACGCTACTCTACTA 60.432 52.174 0.00 0.00 0.00 1.82
502 510 2.634600 CACTCCTCACGCTACTCTACT 58.365 52.381 0.00 0.00 0.00 2.57
503 511 1.671845 CCACTCCTCACGCTACTCTAC 59.328 57.143 0.00 0.00 0.00 2.59
504 512 1.558294 TCCACTCCTCACGCTACTCTA 59.442 52.381 0.00 0.00 0.00 2.43
505 513 0.328592 TCCACTCCTCACGCTACTCT 59.671 55.000 0.00 0.00 0.00 3.24
506 514 0.736053 CTCCACTCCTCACGCTACTC 59.264 60.000 0.00 0.00 0.00 2.59
507 515 0.038455 ACTCCACTCCTCACGCTACT 59.962 55.000 0.00 0.00 0.00 2.57
508 516 0.171455 CACTCCACTCCTCACGCTAC 59.829 60.000 0.00 0.00 0.00 3.58
509 517 0.965866 CCACTCCACTCCTCACGCTA 60.966 60.000 0.00 0.00 0.00 4.26
510 518 2.279069 CCACTCCACTCCTCACGCT 61.279 63.158 0.00 0.00 0.00 5.07
511 519 2.219325 CTCCACTCCACTCCTCACGC 62.219 65.000 0.00 0.00 0.00 5.34
512 520 1.599606 CCTCCACTCCACTCCTCACG 61.600 65.000 0.00 0.00 0.00 4.35
513 521 1.893919 GCCTCCACTCCACTCCTCAC 61.894 65.000 0.00 0.00 0.00 3.51
514 522 1.610673 GCCTCCACTCCACTCCTCA 60.611 63.158 0.00 0.00 0.00 3.86
515 523 0.907230 AAGCCTCCACTCCACTCCTC 60.907 60.000 0.00 0.00 0.00 3.71
516 524 1.159664 AAGCCTCCACTCCACTCCT 59.840 57.895 0.00 0.00 0.00 3.69
517 525 1.298014 CAAGCCTCCACTCCACTCC 59.702 63.158 0.00 0.00 0.00 3.85
518 526 1.298014 CCAAGCCTCCACTCCACTC 59.702 63.158 0.00 0.00 0.00 3.51
519 527 1.062488 AACCAAGCCTCCACTCCACT 61.062 55.000 0.00 0.00 0.00 4.00
520 528 0.690762 TAACCAAGCCTCCACTCCAC 59.309 55.000 0.00 0.00 0.00 4.02
521 529 0.984230 CTAACCAAGCCTCCACTCCA 59.016 55.000 0.00 0.00 0.00 3.86
522 530 0.253327 CCTAACCAAGCCTCCACTCC 59.747 60.000 0.00 0.00 0.00 3.85
523 531 0.253327 CCCTAACCAAGCCTCCACTC 59.747 60.000 0.00 0.00 0.00 3.51
524 532 0.475828 ACCCTAACCAAGCCTCCACT 60.476 55.000 0.00 0.00 0.00 4.00
525 533 0.035343 GACCCTAACCAAGCCTCCAC 60.035 60.000 0.00 0.00 0.00 4.02
526 534 1.550130 CGACCCTAACCAAGCCTCCA 61.550 60.000 0.00 0.00 0.00 3.86
527 535 1.221021 CGACCCTAACCAAGCCTCC 59.779 63.158 0.00 0.00 0.00 4.30
528 536 1.221021 CCGACCCTAACCAAGCCTC 59.779 63.158 0.00 0.00 0.00 4.70
529 537 0.620700 ATCCGACCCTAACCAAGCCT 60.621 55.000 0.00 0.00 0.00 4.58
530 538 0.255033 AATCCGACCCTAACCAAGCC 59.745 55.000 0.00 0.00 0.00 4.35
531 539 1.339727 ACAATCCGACCCTAACCAAGC 60.340 52.381 0.00 0.00 0.00 4.01
532 540 2.027561 TCACAATCCGACCCTAACCAAG 60.028 50.000 0.00 0.00 0.00 3.61
533 541 1.979308 TCACAATCCGACCCTAACCAA 59.021 47.619 0.00 0.00 0.00 3.67
534 542 1.276989 GTCACAATCCGACCCTAACCA 59.723 52.381 0.00 0.00 0.00 3.67
535 543 1.553704 AGTCACAATCCGACCCTAACC 59.446 52.381 0.00 0.00 33.70 2.85
536 544 2.496470 AGAGTCACAATCCGACCCTAAC 59.504 50.000 0.00 0.00 33.70 2.34
537 545 2.816411 AGAGTCACAATCCGACCCTAA 58.184 47.619 0.00 0.00 33.70 2.69
538 546 2.526888 AGAGTCACAATCCGACCCTA 57.473 50.000 0.00 0.00 33.70 3.53
539 547 1.645710 AAGAGTCACAATCCGACCCT 58.354 50.000 0.00 0.00 33.70 4.34
540 548 3.259902 GTTAAGAGTCACAATCCGACCC 58.740 50.000 0.00 0.00 33.70 4.46
541 549 3.259902 GGTTAAGAGTCACAATCCGACC 58.740 50.000 0.00 0.00 33.70 4.79
542 550 3.921677 TGGTTAAGAGTCACAATCCGAC 58.078 45.455 0.00 0.00 0.00 4.79
543 551 3.616560 GCTGGTTAAGAGTCACAATCCGA 60.617 47.826 0.00 0.00 0.00 4.55
544 552 2.673368 GCTGGTTAAGAGTCACAATCCG 59.327 50.000 0.00 0.00 0.00 4.18
545 553 2.673368 CGCTGGTTAAGAGTCACAATCC 59.327 50.000 0.00 0.00 0.00 3.01
546 554 2.094417 GCGCTGGTTAAGAGTCACAATC 59.906 50.000 0.00 0.00 0.00 2.67
547 555 2.076863 GCGCTGGTTAAGAGTCACAAT 58.923 47.619 0.00 0.00 0.00 2.71
548 556 1.070134 AGCGCTGGTTAAGAGTCACAA 59.930 47.619 10.39 0.00 0.00 3.33
549 557 0.679505 AGCGCTGGTTAAGAGTCACA 59.320 50.000 10.39 0.00 0.00 3.58
550 558 2.649331 TAGCGCTGGTTAAGAGTCAC 57.351 50.000 22.90 0.00 0.00 3.67
551 559 3.056107 ACAATAGCGCTGGTTAAGAGTCA 60.056 43.478 22.90 0.00 0.00 3.41
552 560 3.522553 ACAATAGCGCTGGTTAAGAGTC 58.477 45.455 22.90 0.00 0.00 3.36
553 561 3.611766 ACAATAGCGCTGGTTAAGAGT 57.388 42.857 22.90 6.24 0.00 3.24
554 562 5.986135 AGATTACAATAGCGCTGGTTAAGAG 59.014 40.000 22.90 5.61 0.00 2.85
555 563 5.914033 AGATTACAATAGCGCTGGTTAAGA 58.086 37.500 22.90 0.00 0.00 2.10
556 564 5.986135 AGAGATTACAATAGCGCTGGTTAAG 59.014 40.000 22.90 6.37 0.00 1.85
557 565 5.914033 AGAGATTACAATAGCGCTGGTTAA 58.086 37.500 22.90 12.19 0.00 2.01
558 566 5.531122 AGAGATTACAATAGCGCTGGTTA 57.469 39.130 22.90 9.94 0.00 2.85
559 567 4.408182 AGAGATTACAATAGCGCTGGTT 57.592 40.909 22.90 12.31 0.00 3.67
560 568 4.122776 CAAGAGATTACAATAGCGCTGGT 58.877 43.478 22.90 17.64 0.00 4.00
561 569 4.122776 ACAAGAGATTACAATAGCGCTGG 58.877 43.478 22.90 12.21 0.00 4.85
562 570 5.748630 TGTACAAGAGATTACAATAGCGCTG 59.251 40.000 22.90 6.92 0.00 5.18
563 571 5.902681 TGTACAAGAGATTACAATAGCGCT 58.097 37.500 17.26 17.26 0.00 5.92
564 572 6.771188 ATGTACAAGAGATTACAATAGCGC 57.229 37.500 0.00 0.00 32.07 5.92
591 599 8.838365 CGTACCTTAGCTTTATAGAAGAGAGAA 58.162 37.037 0.00 0.00 0.00 2.87
592 600 7.041235 GCGTACCTTAGCTTTATAGAAGAGAGA 60.041 40.741 0.00 0.00 0.00 3.10
593 601 7.079475 GCGTACCTTAGCTTTATAGAAGAGAG 58.921 42.308 0.00 0.00 0.00 3.20
594 602 6.016443 GGCGTACCTTAGCTTTATAGAAGAGA 60.016 42.308 0.00 0.00 0.00 3.10
595 603 6.151004 GGCGTACCTTAGCTTTATAGAAGAG 58.849 44.000 0.00 0.00 0.00 2.85
596 604 6.081872 GGCGTACCTTAGCTTTATAGAAGA 57.918 41.667 0.00 0.00 0.00 2.87
617 625 2.791501 TTCGAGGGTACGCCAAAGGC 62.792 60.000 6.27 0.00 46.75 4.35
618 626 0.320946 TTTCGAGGGTACGCCAAAGG 60.321 55.000 6.27 0.00 36.17 3.11
619 627 1.515081 TTTTCGAGGGTACGCCAAAG 58.485 50.000 6.27 0.00 36.17 2.77
620 628 1.964552 TTTTTCGAGGGTACGCCAAA 58.035 45.000 6.27 1.11 36.17 3.28
621 629 3.702147 TTTTTCGAGGGTACGCCAA 57.298 47.368 6.27 0.00 36.17 4.52
637 645 4.023792 GGATGGACCGAGTAAAACGTTTTT 60.024 41.667 29.42 14.28 0.00 1.94
638 646 3.499537 GGATGGACCGAGTAAAACGTTTT 59.500 43.478 27.65 27.65 0.00 2.43
639 647 3.069289 GGATGGACCGAGTAAAACGTTT 58.931 45.455 7.96 7.96 0.00 3.60
640 648 2.037511 TGGATGGACCGAGTAAAACGTT 59.962 45.455 0.00 0.00 42.61 3.99
641 649 1.619827 TGGATGGACCGAGTAAAACGT 59.380 47.619 0.00 0.00 42.61 3.99
642 650 2.268298 CTGGATGGACCGAGTAAAACG 58.732 52.381 0.00 0.00 42.61 3.60
643 651 3.329929 ACTGGATGGACCGAGTAAAAC 57.670 47.619 0.00 0.00 42.61 2.43
644 652 3.071892 ACAACTGGATGGACCGAGTAAAA 59.928 43.478 0.00 0.00 42.61 1.52
652 660 3.222603 AGAAACAACAACTGGATGGACC 58.777 45.455 0.00 0.00 39.54 4.46
653 661 3.058914 CGAGAAACAACAACTGGATGGAC 60.059 47.826 0.00 0.00 0.00 4.02
660 668 1.326245 TCACGCGAGAAACAACAACTG 59.674 47.619 15.93 0.00 0.00 3.16
848 1428 0.721718 CGTAGGAAAGCTTTGCTCGG 59.278 55.000 33.01 22.42 38.25 4.63
857 1437 2.098831 GGGTGTCGCGTAGGAAAGC 61.099 63.158 5.77 0.00 0.00 3.51
889 1470 1.002134 CTCCACCGCTCCACCAATT 60.002 57.895 0.00 0.00 0.00 2.32
1257 1856 2.125832 GCACGGGGAATTCGACGA 60.126 61.111 22.03 0.00 0.00 4.20
1342 1945 1.295020 TCAGGGTACATTCAAGGGGG 58.705 55.000 0.00 0.00 0.00 5.40
1347 1950 4.860802 ATGTCCATCAGGGTACATTCAA 57.139 40.909 0.00 0.00 35.31 2.69
1413 2026 4.274459 GGCACATAAATACTTCTGGAGCTG 59.726 45.833 0.00 0.00 0.00 4.24
1414 2027 4.164988 AGGCACATAAATACTTCTGGAGCT 59.835 41.667 0.00 0.00 0.00 4.09
1415 2028 4.455606 AGGCACATAAATACTTCTGGAGC 58.544 43.478 0.00 0.00 0.00 4.70
1416 2029 7.055667 TCTAGGCACATAAATACTTCTGGAG 57.944 40.000 0.00 0.00 0.00 3.86
1417 2030 7.618019 ATCTAGGCACATAAATACTTCTGGA 57.382 36.000 0.00 0.00 0.00 3.86
1418 2031 8.682936 AAATCTAGGCACATAAATACTTCTGG 57.317 34.615 0.00 0.00 0.00 3.86
1463 2076 3.565764 TGGATAACTCCTGCCAAGATG 57.434 47.619 0.00 0.00 42.59 2.90
1485 2098 6.692486 AGAATCGACAGAATATAAAGCGGAT 58.308 36.000 0.00 0.00 0.00 4.18
1518 2131 6.937465 TGTTGACACTGGCACATAATTACTTA 59.063 34.615 0.00 0.00 38.20 2.24
1522 2135 6.403092 CGAATGTTGACACTGGCACATAATTA 60.403 38.462 0.00 0.00 38.20 1.40
1606 2219 3.040147 ACAGACCATCAAGTACCAACG 57.960 47.619 0.00 0.00 0.00 4.10
1643 2256 5.997129 ACCAGACAAATTTAAAAGCCAATGG 59.003 36.000 0.00 0.00 0.00 3.16
1771 2384 5.172205 GTTTTGGTTTTTCAGCCTGTACAA 58.828 37.500 0.00 0.00 0.00 2.41
1788 2401 3.073678 TCATGATCGAGGTGTGTTTTGG 58.926 45.455 0.00 0.00 0.00 3.28
1844 2457 5.515626 CACGGTCGTTTTTGAACCATTTTTA 59.484 36.000 0.00 0.00 0.00 1.52
1861 2474 1.442520 CAAAAGCATGCCACGGTCG 60.443 57.895 15.66 0.00 0.00 4.79
1865 2478 0.875040 TTGTGCAAAAGCATGCCACG 60.875 50.000 15.66 1.50 45.83 4.94
1887 2500 2.603776 GGAGTGTGGGGTCGGAGT 60.604 66.667 0.00 0.00 0.00 3.85
1891 2504 2.509931 TAGGAGGGAGTGTGGGGTCG 62.510 65.000 0.00 0.00 0.00 4.79
1954 2568 9.860650 ACATGCTTTAAACTATAATGATACCCA 57.139 29.630 0.00 0.00 0.00 4.51
2006 2620 5.625150 AGGATAATACAAGGCAATGGACTC 58.375 41.667 0.00 0.00 0.00 3.36
2007 2621 5.653255 AGGATAATACAAGGCAATGGACT 57.347 39.130 0.00 0.00 0.00 3.85
2008 2622 5.827797 TGAAGGATAATACAAGGCAATGGAC 59.172 40.000 0.00 0.00 0.00 4.02
2069 2683 1.484038 AACAAGCCAAGCAGAAACCA 58.516 45.000 0.00 0.00 0.00 3.67
2141 2755 7.214381 CCAGTTGATTCCATGCATATTTTGAT 58.786 34.615 0.00 0.00 0.00 2.57
2597 3211 7.451281 ACATTCAAACATAATAGTCGAGTCG 57.549 36.000 6.09 6.09 0.00 4.18
2665 3325 5.046448 CCAAATTCTCATCAACCAATTCCCA 60.046 40.000 0.00 0.00 0.00 4.37
2798 3458 2.721274 TCAACCATGCACGGAAAATG 57.279 45.000 5.45 0.00 0.00 2.32
2799 3459 3.587923 CATTCAACCATGCACGGAAAAT 58.412 40.909 5.45 0.00 0.00 1.82
2800 3460 2.288702 CCATTCAACCATGCACGGAAAA 60.289 45.455 5.45 0.00 0.00 2.29
2806 3466 0.733566 CGCACCATTCAACCATGCAC 60.734 55.000 0.00 0.00 36.02 4.57
2821 3481 0.035739 TAGGAAAAGACCCACCGCAC 59.964 55.000 0.00 0.00 0.00 5.34
2824 3484 3.343941 TGAATAGGAAAAGACCCACCG 57.656 47.619 0.00 0.00 0.00 4.94
2941 3601 3.793712 TGTAAAACTAGGGAGGGCACTA 58.206 45.455 0.00 0.00 0.00 2.74
2942 3602 2.627933 TGTAAAACTAGGGAGGGCACT 58.372 47.619 0.00 0.00 0.00 4.40
2943 3603 3.279434 CATGTAAAACTAGGGAGGGCAC 58.721 50.000 0.00 0.00 0.00 5.01
2991 3671 8.025445 CCATAAATATTGATAGGAAGCTGCAAC 58.975 37.037 1.02 0.00 0.00 4.17
3054 3734 7.719193 TCAAAGAGGTTCAAGATAAATGTCACA 59.281 33.333 0.00 0.00 0.00 3.58
3066 3746 2.291741 GTGGCTGTCAAAGAGGTTCAAG 59.708 50.000 0.00 0.00 0.00 3.02
3084 3764 2.025416 TCATTTGGTATGTCTGGGGTGG 60.025 50.000 0.00 0.00 0.00 4.61
3086 3766 3.269381 ACATCATTTGGTATGTCTGGGGT 59.731 43.478 0.00 0.00 30.54 4.95
3109 3789 9.793259 TCCAGAAAACTAAAGATATGAACAAGT 57.207 29.630 0.00 0.00 0.00 3.16
3158 3838 5.842907 AGAAAAATACCAGCAAACAAGACC 58.157 37.500 0.00 0.00 0.00 3.85
3199 3879 3.925913 TGGCGTACGTTTGGAAATAGTAC 59.074 43.478 17.90 9.17 34.50 2.73
3214 3894 2.614983 TCAACAAAAGGAACTGGCGTAC 59.385 45.455 0.00 0.00 40.86 3.67
3217 3897 1.403679 TGTCAACAAAAGGAACTGGCG 59.596 47.619 0.00 0.00 40.86 5.69
3220 3900 3.859386 GCAAGTGTCAACAAAAGGAACTG 59.141 43.478 0.00 0.00 40.86 3.16
3347 4027 9.564474 CTGTTCTGTACACCACTGGATACAAGT 62.564 44.444 0.71 0.00 38.37 3.16
3371 4051 2.009051 TGCGCAAGAATACCATGACTG 58.991 47.619 8.16 0.00 43.02 3.51
3510 4190 5.007682 TGTTTAGAGGGGAACATTGTAAGC 58.992 41.667 0.00 0.00 31.30 3.09
3518 4198 3.907474 TCAGACATGTTTAGAGGGGAACA 59.093 43.478 0.00 0.00 39.78 3.18
3599 4279 0.169009 GAGAACTGAACGGCATTGCC 59.831 55.000 18.10 18.10 46.75 4.52
3645 4325 3.350219 TTCTTAGGACAATGGTGAGGC 57.650 47.619 0.00 0.00 0.00 4.70
3865 4545 6.534475 AATGCACAATGGAATATCAAGTGT 57.466 33.333 0.00 0.00 32.78 3.55
3884 4564 4.874970 AGTGAAATCAGTCCAACAAATGC 58.125 39.130 0.00 0.00 0.00 3.56
3892 4572 5.624159 ACATGAAAGAGTGAAATCAGTCCA 58.376 37.500 13.32 6.43 45.15 4.02
4211 4891 8.747538 AACATCCACTCTACAACTTTACTTTT 57.252 30.769 0.00 0.00 0.00 2.27
4235 4945 6.961360 TCATTGGTACACACATTTGGTAAA 57.039 33.333 0.00 0.00 39.29 2.01
4564 5642 9.920826 CACTTAAAATATCTACGTACGTCTACA 57.079 33.333 26.53 9.63 0.00 2.74
4565 5643 9.922305 ACACTTAAAATATCTACGTACGTCTAC 57.078 33.333 26.53 0.00 0.00 2.59
4567 5645 9.846248 AAACACTTAAAATATCTACGTACGTCT 57.154 29.630 26.53 13.34 0.00 4.18
4598 5676 8.687292 AAAGTTTTACGTAATCCTTTTCTCCT 57.313 30.769 19.23 4.94 0.00 3.69
4656 5806 1.980052 CAGGCCTCTGGTCCGTTTA 59.020 57.895 0.00 0.00 37.36 2.01
4657 5807 2.750350 CAGGCCTCTGGTCCGTTT 59.250 61.111 0.00 0.00 37.36 3.60
4686 5836 9.355916 AGTATATAGTCTTGTCATAAGAGTGCA 57.644 33.333 1.81 0.00 32.59 4.57
4798 5948 4.685169 ACATACGAAGCAAAATGAGTGG 57.315 40.909 0.00 0.00 0.00 4.00
4812 5962 7.339721 AGAGATTCCAAAAGAGACTACATACGA 59.660 37.037 0.00 0.00 0.00 3.43
4813 5963 7.484975 AGAGATTCCAAAAGAGACTACATACG 58.515 38.462 0.00 0.00 0.00 3.06
4842 5992 6.492772 TCCCTCCGTTCCTAAATATAAGTCTC 59.507 42.308 0.00 0.00 0.00 3.36
4847 5997 9.827198 TTATACTCCCTCCGTTCCTAAATATAA 57.173 33.333 0.00 0.00 0.00 0.98
4856 6006 5.715753 AGATGTATTATACTCCCTCCGTTCC 59.284 44.000 3.92 0.00 0.00 3.62
4858 6008 6.312529 TCAGATGTATTATACTCCCTCCGTT 58.687 40.000 3.92 0.00 0.00 4.44
4859 6009 5.888901 TCAGATGTATTATACTCCCTCCGT 58.111 41.667 3.92 0.00 0.00 4.69
4860 6010 6.181190 TCTCAGATGTATTATACTCCCTCCG 58.819 44.000 3.92 0.00 0.00 4.63
4861 6011 7.417342 GCATCTCAGATGTATTATACTCCCTCC 60.417 44.444 16.28 0.00 0.00 4.30
4862 6012 7.341769 AGCATCTCAGATGTATTATACTCCCTC 59.658 40.741 16.28 0.00 0.00 4.30
4863 6013 7.123997 CAGCATCTCAGATGTATTATACTCCCT 59.876 40.741 16.28 0.00 0.00 4.20
4864 6014 7.264221 CAGCATCTCAGATGTATTATACTCCC 58.736 42.308 16.28 0.00 0.00 4.30
4865 6015 6.756074 GCAGCATCTCAGATGTATTATACTCC 59.244 42.308 16.28 0.00 0.00 3.85
4866 6016 7.318893 TGCAGCATCTCAGATGTATTATACTC 58.681 38.462 16.28 0.00 0.00 2.59
4867 6017 7.039152 ACTGCAGCATCTCAGATGTATTATACT 60.039 37.037 15.27 0.00 34.57 2.12
4868 6018 7.095910 ACTGCAGCATCTCAGATGTATTATAC 58.904 38.462 15.27 0.00 34.57 1.47
4869 6019 7.237209 ACTGCAGCATCTCAGATGTATTATA 57.763 36.000 15.27 0.00 34.57 0.98
4870 6020 6.111669 ACTGCAGCATCTCAGATGTATTAT 57.888 37.500 15.27 0.00 34.57 1.28
4871 6021 5.541953 ACTGCAGCATCTCAGATGTATTA 57.458 39.130 15.27 0.76 34.57 0.98
4872 6022 4.418973 ACTGCAGCATCTCAGATGTATT 57.581 40.909 15.27 0.00 34.57 1.89
4873 6023 4.588106 AGTACTGCAGCATCTCAGATGTAT 59.412 41.667 15.27 2.70 34.57 2.29
4874 6024 3.956848 AGTACTGCAGCATCTCAGATGTA 59.043 43.478 15.27 0.00 34.57 2.29
4875 6025 2.765135 AGTACTGCAGCATCTCAGATGT 59.235 45.455 15.27 0.43 34.57 3.06
4876 6026 3.455990 AGTACTGCAGCATCTCAGATG 57.544 47.619 15.27 10.64 34.57 2.90
4879 6029 3.443037 GTGTAGTACTGCAGCATCTCAG 58.557 50.000 14.45 0.00 36.45 3.35
4907 6057 4.269183 TCCAACACAAGGCAAGTATATGG 58.731 43.478 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.