Multiple sequence alignment - TraesCS1D01G349400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G349400 chr1D 100.000 3212 0 0 1 3212 435747748 435750959 0.000000e+00 5932.0
1 TraesCS1D01G349400 chr1A 90.199 2459 165 38 797 3212 533139699 533142124 0.000000e+00 3136.0
2 TraesCS1D01G349400 chr1B 90.546 1576 58 37 803 2351 589060200 589061711 0.000000e+00 2001.0
3 TraesCS1D01G349400 chr1B 84.809 836 95 20 2405 3212 589063157 589063988 0.000000e+00 811.0
4 TraesCS1D01G349400 chr1B 86.250 80 11 0 602 681 625096166 625096245 1.590000e-13 87.9
5 TraesCS1D01G349400 chr1B 91.228 57 5 0 2349 2405 589062108 589062164 9.550000e-11 78.7
6 TraesCS1D01G349400 chr3B 93.750 64 4 0 600 663 65214144 65214081 2.640000e-16 97.1
7 TraesCS1D01G349400 chr5D 93.548 62 4 0 602 663 382510554 382510493 3.410000e-15 93.5
8 TraesCS1D01G349400 chr5D 89.855 69 6 1 596 663 501123011 501122943 1.590000e-13 87.9
9 TraesCS1D01G349400 chr5D 88.406 69 8 0 595 663 520110277 520110209 2.050000e-12 84.2
10 TraesCS1D01G349400 chr4A 94.828 58 3 0 603 660 658858461 658858518 1.230000e-14 91.6
11 TraesCS1D01G349400 chr6A 89.552 67 7 0 594 660 51480523 51480589 5.710000e-13 86.1
12 TraesCS1D01G349400 chr2D 87.838 74 8 1 590 663 603885739 603885811 5.710000e-13 86.1
13 TraesCS1D01G349400 chr5B 88.406 69 7 1 595 663 532360015 532359948 7.390000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G349400 chr1D 435747748 435750959 3211 False 5932.000000 5932 100.000 1 3212 1 chr1D.!!$F1 3211
1 TraesCS1D01G349400 chr1A 533139699 533142124 2425 False 3136.000000 3136 90.199 797 3212 1 chr1A.!!$F1 2415
2 TraesCS1D01G349400 chr1B 589060200 589063988 3788 False 963.566667 2001 88.861 803 3212 3 chr1B.!!$F2 2409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.103208 ATCCGTCGGCTGAAGCTAAG 59.897 55.0 6.34 0.0 41.70 2.18 F
921 929 0.179150 CCCAGCGAAGAAGAGTCGAG 60.179 60.0 0.00 0.0 41.02 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2051 0.178924 ACCTGCCAAAAATGAGCCCT 60.179 50.0 0.0 0.0 0.00 5.19 R
2253 2292 0.107945 AGGAGCACGAGCCAAATCTC 60.108 55.0 0.0 0.0 43.56 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.767261 AGACCGTAATAAGAGATAGATGATGC 58.233 38.462 0.00 0.00 0.00 3.91
27 28 7.613801 AGACCGTAATAAGAGATAGATGATGCT 59.386 37.037 0.00 0.00 0.00 3.79
28 29 8.809468 ACCGTAATAAGAGATAGATGATGCTA 57.191 34.615 0.00 0.00 0.00 3.49
29 30 8.898761 ACCGTAATAAGAGATAGATGATGCTAG 58.101 37.037 0.00 0.00 0.00 3.42
30 31 8.349245 CCGTAATAAGAGATAGATGATGCTAGG 58.651 40.741 0.00 0.00 0.00 3.02
31 32 8.898761 CGTAATAAGAGATAGATGATGCTAGGT 58.101 37.037 0.00 0.00 0.00 3.08
33 34 8.891985 AATAAGAGATAGATGATGCTAGGTGA 57.108 34.615 0.00 0.00 0.00 4.02
34 35 6.839124 AAGAGATAGATGATGCTAGGTGAG 57.161 41.667 0.00 0.00 0.00 3.51
47 48 3.987404 GTGAGCCCCACATGACAC 58.013 61.111 0.00 0.00 45.03 3.67
48 49 2.034879 GTGAGCCCCACATGACACG 61.035 63.158 0.00 0.00 45.03 4.49
49 50 3.127533 GAGCCCCACATGACACGC 61.128 66.667 0.00 0.00 0.00 5.34
52 53 3.118454 CCCCACATGACACGCGTC 61.118 66.667 9.86 0.00 42.93 5.19
60 61 4.704007 GACACGCGTCATACGGAT 57.296 55.556 9.86 0.00 42.82 4.18
61 62 2.204491 GACACGCGTCATACGGATG 58.796 57.895 9.86 0.00 42.82 3.51
62 63 0.248336 GACACGCGTCATACGGATGA 60.248 55.000 9.86 6.12 42.82 2.92
63 64 0.248498 ACACGCGTCATACGGATGAG 60.248 55.000 11.57 6.64 42.87 2.90
64 65 0.934901 CACGCGTCATACGGATGAGG 60.935 60.000 23.11 23.11 46.32 3.86
66 67 4.228451 CGTCATACGGATGAGGCG 57.772 61.111 16.83 11.44 42.87 5.52
67 68 1.371758 CGTCATACGGATGAGGCGG 60.372 63.158 16.83 0.83 42.87 6.13
68 69 1.664965 GTCATACGGATGAGGCGGC 60.665 63.158 11.57 0.00 42.87 6.53
69 70 2.734723 CATACGGATGAGGCGGCG 60.735 66.667 0.00 0.51 34.73 6.46
70 71 3.991051 ATACGGATGAGGCGGCGG 61.991 66.667 9.78 0.00 0.00 6.13
86 87 3.790177 GGACGCCCGTGTACAATC 58.210 61.111 0.00 0.00 0.00 2.67
87 88 1.812507 GGACGCCCGTGTACAATCC 60.813 63.158 0.00 0.00 0.00 3.01
88 89 2.125832 ACGCCCGTGTACAATCCG 60.126 61.111 0.00 0.00 0.00 4.18
89 90 2.125832 CGCCCGTGTACAATCCGT 60.126 61.111 0.00 0.00 0.00 4.69
90 91 2.162754 CGCCCGTGTACAATCCGTC 61.163 63.158 0.00 0.00 0.00 4.79
91 92 2.162754 GCCCGTGTACAATCCGTCG 61.163 63.158 0.00 0.00 0.00 5.12
92 93 1.517694 CCCGTGTACAATCCGTCGG 60.518 63.158 4.39 4.39 38.05 4.79
93 94 2.162754 CCGTGTACAATCCGTCGGC 61.163 63.158 6.34 0.00 0.00 5.54
94 95 1.153901 CGTGTACAATCCGTCGGCT 60.154 57.895 6.34 0.00 0.00 5.52
95 96 1.410737 CGTGTACAATCCGTCGGCTG 61.411 60.000 6.34 8.99 0.00 4.85
96 97 0.108992 GTGTACAATCCGTCGGCTGA 60.109 55.000 17.17 0.00 0.00 4.26
97 98 0.604073 TGTACAATCCGTCGGCTGAA 59.396 50.000 17.17 0.00 0.00 3.02
98 99 1.278238 GTACAATCCGTCGGCTGAAG 58.722 55.000 17.17 0.00 0.00 3.02
99 100 0.459585 TACAATCCGTCGGCTGAAGC 60.460 55.000 17.17 0.00 41.14 3.86
100 101 1.448540 CAATCCGTCGGCTGAAGCT 60.449 57.895 6.34 0.00 41.70 3.74
101 102 0.179111 CAATCCGTCGGCTGAAGCTA 60.179 55.000 6.34 0.00 41.70 3.32
102 103 0.535335 AATCCGTCGGCTGAAGCTAA 59.465 50.000 6.34 0.00 41.70 3.09
103 104 0.103208 ATCCGTCGGCTGAAGCTAAG 59.897 55.000 6.34 0.00 41.70 2.18
104 105 0.963856 TCCGTCGGCTGAAGCTAAGA 60.964 55.000 6.34 0.00 41.70 2.10
105 106 0.103208 CCGTCGGCTGAAGCTAAGAT 59.897 55.000 0.00 0.00 41.70 2.40
106 107 1.471676 CCGTCGGCTGAAGCTAAGATT 60.472 52.381 0.00 0.00 41.70 2.40
107 108 1.855360 CGTCGGCTGAAGCTAAGATTC 59.145 52.381 0.00 0.00 41.70 2.52
108 109 2.480416 CGTCGGCTGAAGCTAAGATTCT 60.480 50.000 0.00 0.00 41.70 2.40
109 110 3.120041 GTCGGCTGAAGCTAAGATTCTC 58.880 50.000 0.00 0.00 41.70 2.87
110 111 2.760650 TCGGCTGAAGCTAAGATTCTCA 59.239 45.455 1.74 0.00 41.70 3.27
111 112 2.863137 CGGCTGAAGCTAAGATTCTCAC 59.137 50.000 1.74 0.00 41.70 3.51
112 113 3.430098 CGGCTGAAGCTAAGATTCTCACT 60.430 47.826 1.74 0.00 41.70 3.41
113 114 4.512484 GGCTGAAGCTAAGATTCTCACTT 58.488 43.478 1.74 0.00 41.70 3.16
114 115 4.940654 GGCTGAAGCTAAGATTCTCACTTT 59.059 41.667 1.74 0.00 41.70 2.66
115 116 5.414144 GGCTGAAGCTAAGATTCTCACTTTT 59.586 40.000 1.74 0.00 41.70 2.27
116 117 6.072230 GGCTGAAGCTAAGATTCTCACTTTTT 60.072 38.462 1.74 0.00 41.70 1.94
117 118 7.119846 GGCTGAAGCTAAGATTCTCACTTTTTA 59.880 37.037 1.74 0.00 41.70 1.52
118 119 8.507249 GCTGAAGCTAAGATTCTCACTTTTTAA 58.493 33.333 0.56 0.00 38.21 1.52
190 191 9.425248 AAGAGATGGCATTTATCATTTAGGAAA 57.575 29.630 0.00 0.00 0.00 3.13
191 192 9.425248 AGAGATGGCATTTATCATTTAGGAAAA 57.575 29.630 0.00 0.00 0.00 2.29
219 220 9.651913 ACATTTTTATTTTACGAGATGGCATTT 57.348 25.926 0.00 0.00 0.00 2.32
258 259 9.933723 AGATGGCATTTTATATTAAAAGATGGC 57.066 29.630 0.00 7.92 35.50 4.40
259 260 9.709495 GATGGCATTTTATATTAAAAGATGGCA 57.291 29.630 15.77 15.77 41.13 4.92
314 315 8.956533 ATTATTTGTACTGCCACTTTTTGTTT 57.043 26.923 0.00 0.00 0.00 2.83
315 316 8.779354 TTATTTGTACTGCCACTTTTTGTTTT 57.221 26.923 0.00 0.00 0.00 2.43
316 317 6.473397 TTTGTACTGCCACTTTTTGTTTTG 57.527 33.333 0.00 0.00 0.00 2.44
317 318 5.140747 TGTACTGCCACTTTTTGTTTTGT 57.859 34.783 0.00 0.00 0.00 2.83
318 319 4.926238 TGTACTGCCACTTTTTGTTTTGTG 59.074 37.500 0.00 0.00 0.00 3.33
319 320 4.001618 ACTGCCACTTTTTGTTTTGTGT 57.998 36.364 0.00 0.00 0.00 3.72
320 321 4.384940 ACTGCCACTTTTTGTTTTGTGTT 58.615 34.783 0.00 0.00 0.00 3.32
321 322 5.542779 ACTGCCACTTTTTGTTTTGTGTTA 58.457 33.333 0.00 0.00 0.00 2.41
322 323 5.407084 ACTGCCACTTTTTGTTTTGTGTTAC 59.593 36.000 0.00 0.00 0.00 2.50
323 324 5.297547 TGCCACTTTTTGTTTTGTGTTACA 58.702 33.333 0.00 0.00 0.00 2.41
324 325 5.177696 TGCCACTTTTTGTTTTGTGTTACAC 59.822 36.000 8.76 8.76 34.56 2.90
325 326 5.177696 GCCACTTTTTGTTTTGTGTTACACA 59.822 36.000 14.73 14.73 43.02 3.72
337 338 5.923733 TGTGTTACACAAAGGTTTTGGAT 57.076 34.783 16.40 0.00 41.69 3.41
338 339 5.655488 TGTGTTACACAAAGGTTTTGGATG 58.345 37.500 16.40 0.00 41.69 3.51
339 340 5.419155 TGTGTTACACAAAGGTTTTGGATGA 59.581 36.000 16.40 0.00 41.69 2.92
340 341 6.097554 TGTGTTACACAAAGGTTTTGGATGAT 59.902 34.615 16.40 0.00 41.69 2.45
341 342 6.420604 GTGTTACACAAAGGTTTTGGATGATG 59.579 38.462 10.96 0.00 34.08 3.07
342 343 6.322456 TGTTACACAAAGGTTTTGGATGATGA 59.678 34.615 6.51 0.00 0.00 2.92
343 344 5.200368 ACACAAAGGTTTTGGATGATGAC 57.800 39.130 6.51 0.00 0.00 3.06
344 345 4.895297 ACACAAAGGTTTTGGATGATGACT 59.105 37.500 6.51 0.00 0.00 3.41
345 346 6.068010 ACACAAAGGTTTTGGATGATGACTA 58.932 36.000 6.51 0.00 0.00 2.59
346 347 6.207417 ACACAAAGGTTTTGGATGATGACTAG 59.793 38.462 6.51 0.00 0.00 2.57
347 348 5.711976 ACAAAGGTTTTGGATGATGACTAGG 59.288 40.000 6.51 0.00 0.00 3.02
348 349 5.779241 AAGGTTTTGGATGATGACTAGGA 57.221 39.130 0.00 0.00 0.00 2.94
349 350 5.779241 AGGTTTTGGATGATGACTAGGAA 57.221 39.130 0.00 0.00 0.00 3.36
350 351 5.749462 AGGTTTTGGATGATGACTAGGAAG 58.251 41.667 0.00 0.00 0.00 3.46
351 352 4.884164 GGTTTTGGATGATGACTAGGAAGG 59.116 45.833 0.00 0.00 0.00 3.46
352 353 5.501156 GTTTTGGATGATGACTAGGAAGGT 58.499 41.667 0.00 0.00 0.00 3.50
353 354 4.760530 TTGGATGATGACTAGGAAGGTG 57.239 45.455 0.00 0.00 0.00 4.00
354 355 3.041211 TGGATGATGACTAGGAAGGTGG 58.959 50.000 0.00 0.00 0.00 4.61
355 356 2.224402 GGATGATGACTAGGAAGGTGGC 60.224 54.545 0.00 0.00 0.00 5.01
356 357 1.951209 TGATGACTAGGAAGGTGGCA 58.049 50.000 0.00 0.00 0.00 4.92
357 358 2.265367 TGATGACTAGGAAGGTGGCAA 58.735 47.619 0.00 0.00 0.00 4.52
358 359 2.846206 TGATGACTAGGAAGGTGGCAAT 59.154 45.455 0.00 0.00 0.00 3.56
359 360 3.266772 TGATGACTAGGAAGGTGGCAATT 59.733 43.478 0.00 0.00 0.00 2.32
360 361 3.806949 TGACTAGGAAGGTGGCAATTT 57.193 42.857 0.00 0.00 0.00 1.82
361 362 4.112634 TGACTAGGAAGGTGGCAATTTT 57.887 40.909 0.00 0.00 0.00 1.82
362 363 4.479158 TGACTAGGAAGGTGGCAATTTTT 58.521 39.130 0.00 0.00 0.00 1.94
363 364 4.280677 TGACTAGGAAGGTGGCAATTTTTG 59.719 41.667 0.00 0.00 0.00 2.44
364 365 4.223144 ACTAGGAAGGTGGCAATTTTTGT 58.777 39.130 0.00 0.00 0.00 2.83
365 366 3.473923 AGGAAGGTGGCAATTTTTGTG 57.526 42.857 0.00 0.00 0.00 3.33
366 367 2.104622 AGGAAGGTGGCAATTTTTGTGG 59.895 45.455 0.00 0.00 0.00 4.17
367 368 1.872952 GAAGGTGGCAATTTTTGTGGC 59.127 47.619 0.00 0.00 41.71 5.01
373 374 4.996788 TGGCAATTTTTGTGGCATTTTT 57.003 31.818 0.00 0.00 45.61 1.94
374 375 4.929781 TGGCAATTTTTGTGGCATTTTTC 58.070 34.783 0.00 0.00 45.61 2.29
375 376 4.400251 TGGCAATTTTTGTGGCATTTTTCA 59.600 33.333 0.00 0.00 45.61 2.69
376 377 4.739228 GGCAATTTTTGTGGCATTTTTCAC 59.261 37.500 0.00 0.00 41.05 3.18
377 378 5.450274 GGCAATTTTTGTGGCATTTTTCACT 60.450 36.000 0.00 0.00 41.05 3.41
378 379 6.238593 GGCAATTTTTGTGGCATTTTTCACTA 60.239 34.615 0.00 0.00 41.05 2.74
379 380 7.192232 GCAATTTTTGTGGCATTTTTCACTAA 58.808 30.769 0.00 0.00 35.15 2.24
380 381 7.165647 GCAATTTTTGTGGCATTTTTCACTAAC 59.834 33.333 0.00 0.00 35.15 2.34
381 382 6.670077 TTTTTGTGGCATTTTTCACTAACC 57.330 33.333 0.00 0.00 35.15 2.85
382 383 3.634568 TGTGGCATTTTTCACTAACCG 57.365 42.857 0.00 0.00 35.15 4.44
383 384 2.952978 TGTGGCATTTTTCACTAACCGT 59.047 40.909 0.00 0.00 35.15 4.83
384 385 3.243234 TGTGGCATTTTTCACTAACCGTG 60.243 43.478 0.00 0.00 45.18 4.94
385 386 2.294791 TGGCATTTTTCACTAACCGTGG 59.705 45.455 0.00 0.00 43.94 4.94
386 387 2.324860 GCATTTTTCACTAACCGTGGC 58.675 47.619 0.00 0.00 43.94 5.01
387 388 2.287909 GCATTTTTCACTAACCGTGGCA 60.288 45.455 0.00 0.00 43.94 4.92
388 389 3.797184 GCATTTTTCACTAACCGTGGCAA 60.797 43.478 0.00 0.00 43.94 4.52
389 390 4.555262 CATTTTTCACTAACCGTGGCAAT 58.445 39.130 0.00 0.00 43.94 3.56
390 391 4.657436 TTTTTCACTAACCGTGGCAATT 57.343 36.364 0.00 0.00 43.94 2.32
391 392 4.657436 TTTTCACTAACCGTGGCAATTT 57.343 36.364 0.00 0.00 43.94 1.82
392 393 3.634568 TTCACTAACCGTGGCAATTTG 57.365 42.857 0.00 0.00 43.94 2.32
393 394 2.852449 TCACTAACCGTGGCAATTTGA 58.148 42.857 0.00 0.00 43.94 2.69
394 395 3.215151 TCACTAACCGTGGCAATTTGAA 58.785 40.909 0.00 0.00 43.94 2.69
395 396 3.632604 TCACTAACCGTGGCAATTTGAAA 59.367 39.130 0.00 0.00 43.94 2.69
396 397 4.279671 TCACTAACCGTGGCAATTTGAAAT 59.720 37.500 0.00 0.00 43.94 2.17
397 398 5.473846 TCACTAACCGTGGCAATTTGAAATA 59.526 36.000 0.00 0.00 43.94 1.40
398 399 6.016192 TCACTAACCGTGGCAATTTGAAATAA 60.016 34.615 0.00 0.00 43.94 1.40
399 400 6.642950 CACTAACCGTGGCAATTTGAAATAAA 59.357 34.615 0.00 0.00 40.02 1.40
400 401 7.169982 CACTAACCGTGGCAATTTGAAATAAAA 59.830 33.333 0.00 0.00 40.02 1.52
401 402 6.538189 AACCGTGGCAATTTGAAATAAAAG 57.462 33.333 0.00 0.00 0.00 2.27
402 403 5.848406 ACCGTGGCAATTTGAAATAAAAGA 58.152 33.333 0.00 0.00 0.00 2.52
403 404 6.284459 ACCGTGGCAATTTGAAATAAAAGAA 58.716 32.000 0.00 0.00 0.00 2.52
404 405 6.763610 ACCGTGGCAATTTGAAATAAAAGAAA 59.236 30.769 0.00 0.00 0.00 2.52
405 406 7.281100 ACCGTGGCAATTTGAAATAAAAGAAAA 59.719 29.630 0.00 0.00 0.00 2.29
406 407 8.125448 CCGTGGCAATTTGAAATAAAAGAAAAA 58.875 29.630 0.00 0.00 0.00 1.94
407 408 9.662545 CGTGGCAATTTGAAATAAAAGAAAAAT 57.337 25.926 0.00 0.00 0.00 1.82
421 422 9.938280 ATAAAAGAAAAATACTTTAACTGGGCC 57.062 29.630 0.00 0.00 36.71 5.80
422 423 6.987403 AAGAAAAATACTTTAACTGGGCCA 57.013 33.333 5.85 5.85 0.00 5.36
423 424 7.553504 AAGAAAAATACTTTAACTGGGCCAT 57.446 32.000 6.72 0.00 0.00 4.40
424 425 7.553504 AGAAAAATACTTTAACTGGGCCATT 57.446 32.000 6.72 0.00 0.00 3.16
425 426 7.973402 AGAAAAATACTTTAACTGGGCCATTT 58.027 30.769 14.01 14.01 0.00 2.32
426 427 8.436778 AGAAAAATACTTTAACTGGGCCATTTT 58.563 29.630 14.77 10.30 0.00 1.82
427 428 8.988546 AAAAATACTTTAACTGGGCCATTTTT 57.011 26.923 14.77 13.73 32.42 1.94
428 429 7.977789 AAATACTTTAACTGGGCCATTTTTG 57.022 32.000 14.77 7.81 0.00 2.44
429 430 4.350368 ACTTTAACTGGGCCATTTTTGG 57.650 40.909 14.77 7.47 0.00 3.28
430 431 3.714280 ACTTTAACTGGGCCATTTTTGGT 59.286 39.130 14.77 8.05 0.00 3.67
431 432 4.202315 ACTTTAACTGGGCCATTTTTGGTC 60.202 41.667 14.77 0.00 0.00 4.02
432 433 2.101640 AACTGGGCCATTTTTGGTCT 57.898 45.000 6.72 0.00 33.25 3.85
433 434 1.632589 ACTGGGCCATTTTTGGTCTC 58.367 50.000 6.72 0.00 33.25 3.36
434 435 0.527565 CTGGGCCATTTTTGGTCTCG 59.472 55.000 6.72 0.00 33.25 4.04
435 436 0.897863 TGGGCCATTTTTGGTCTCGG 60.898 55.000 0.00 0.00 33.25 4.63
436 437 0.610785 GGGCCATTTTTGGTCTCGGA 60.611 55.000 4.39 0.00 33.25 4.55
437 438 0.811281 GGCCATTTTTGGTCTCGGAG 59.189 55.000 0.00 0.00 0.00 4.63
438 439 0.811281 GCCATTTTTGGTCTCGGAGG 59.189 55.000 4.96 0.00 0.00 4.30
439 440 0.811281 CCATTTTTGGTCTCGGAGGC 59.189 55.000 4.96 2.44 0.00 4.70
440 441 0.447801 CATTTTTGGTCTCGGAGGCG 59.552 55.000 4.96 0.00 0.00 5.52
441 442 1.305930 ATTTTTGGTCTCGGAGGCGC 61.306 55.000 0.00 0.00 0.00 6.53
442 443 3.894547 TTTTGGTCTCGGAGGCGCC 62.895 63.158 21.89 21.89 0.00 6.53
463 464 4.697756 CTCGCTCCCGGGCAAACA 62.698 66.667 18.49 0.00 34.56 2.83
464 465 4.257654 TCGCTCCCGGGCAAACAA 62.258 61.111 18.49 0.00 34.56 2.83
465 466 4.038080 CGCTCCCGGGCAAACAAC 62.038 66.667 18.49 0.00 0.00 3.32
466 467 3.680786 GCTCCCGGGCAAACAACC 61.681 66.667 18.49 0.00 0.00 3.77
467 468 2.203422 CTCCCGGGCAAACAACCA 60.203 61.111 18.49 0.00 0.00 3.67
468 469 2.203422 TCCCGGGCAAACAACCAG 60.203 61.111 18.49 0.00 0.00 4.00
469 470 2.203422 CCCGGGCAAACAACCAGA 60.203 61.111 8.08 0.00 0.00 3.86
470 471 1.830408 CCCGGGCAAACAACCAGAA 60.830 57.895 8.08 0.00 0.00 3.02
471 472 1.395826 CCCGGGCAAACAACCAGAAA 61.396 55.000 8.08 0.00 0.00 2.52
472 473 0.249280 CCGGGCAAACAACCAGAAAC 60.249 55.000 0.00 0.00 0.00 2.78
473 474 0.457851 CGGGCAAACAACCAGAAACA 59.542 50.000 0.00 0.00 0.00 2.83
474 475 1.068434 CGGGCAAACAACCAGAAACAT 59.932 47.619 0.00 0.00 0.00 2.71
475 476 2.482839 CGGGCAAACAACCAGAAACATT 60.483 45.455 0.00 0.00 0.00 2.71
476 477 3.540617 GGGCAAACAACCAGAAACATTT 58.459 40.909 0.00 0.00 0.00 2.32
477 478 3.312146 GGGCAAACAACCAGAAACATTTG 59.688 43.478 0.00 0.00 0.00 2.32
478 479 3.242706 GGCAAACAACCAGAAACATTTGC 60.243 43.478 10.27 10.27 47.00 3.68
479 480 3.622612 GCAAACAACCAGAAACATTTGCT 59.377 39.130 11.22 0.00 45.25 3.91
480 481 4.808364 GCAAACAACCAGAAACATTTGCTA 59.192 37.500 11.22 0.00 45.25 3.49
481 482 5.466393 GCAAACAACCAGAAACATTTGCTAT 59.534 36.000 11.22 0.00 45.25 2.97
482 483 6.564499 GCAAACAACCAGAAACATTTGCTATG 60.564 38.462 11.22 0.00 45.25 2.23
483 484 5.789643 ACAACCAGAAACATTTGCTATGT 57.210 34.783 0.00 0.00 0.00 2.29
484 485 5.531634 ACAACCAGAAACATTTGCTATGTG 58.468 37.500 5.91 0.00 31.80 3.21
485 486 5.068987 ACAACCAGAAACATTTGCTATGTGT 59.931 36.000 5.91 1.07 31.80 3.72
486 487 6.264292 ACAACCAGAAACATTTGCTATGTGTA 59.736 34.615 5.91 0.00 31.80 2.90
487 488 6.254281 ACCAGAAACATTTGCTATGTGTAC 57.746 37.500 5.91 0.00 31.80 2.90
488 489 5.767665 ACCAGAAACATTTGCTATGTGTACA 59.232 36.000 5.91 0.00 31.80 2.90
489 490 6.434028 ACCAGAAACATTTGCTATGTGTACAT 59.566 34.615 0.00 2.75 40.22 2.29
490 491 7.039784 ACCAGAAACATTTGCTATGTGTACATT 60.040 33.333 0.00 0.00 37.76 2.71
491 492 7.274033 CCAGAAACATTTGCTATGTGTACATTG 59.726 37.037 0.00 2.60 37.76 2.82
519 520 4.768130 TTTTGTTCAACACCGTTTGAGA 57.232 36.364 0.00 0.00 36.84 3.27
520 521 4.974368 TTTGTTCAACACCGTTTGAGAT 57.026 36.364 0.00 0.00 36.84 2.75
521 522 4.974368 TTGTTCAACACCGTTTGAGATT 57.026 36.364 0.00 0.00 36.84 2.40
522 523 6.438259 TTTGTTCAACACCGTTTGAGATTA 57.562 33.333 0.00 0.00 36.84 1.75
523 524 5.412526 TGTTCAACACCGTTTGAGATTAC 57.587 39.130 0.00 0.00 36.84 1.89
524 525 4.273969 TGTTCAACACCGTTTGAGATTACC 59.726 41.667 0.00 0.00 36.84 2.85
525 526 3.061322 TCAACACCGTTTGAGATTACCG 58.939 45.455 0.00 0.00 31.68 4.02
526 527 3.061322 CAACACCGTTTGAGATTACCGA 58.939 45.455 0.00 0.00 0.00 4.69
527 528 3.389925 ACACCGTTTGAGATTACCGAA 57.610 42.857 0.00 0.00 0.00 4.30
528 529 3.731089 ACACCGTTTGAGATTACCGAAA 58.269 40.909 0.00 0.00 0.00 3.46
529 530 4.128643 ACACCGTTTGAGATTACCGAAAA 58.871 39.130 0.00 0.00 0.00 2.29
530 531 4.575645 ACACCGTTTGAGATTACCGAAAAA 59.424 37.500 0.00 0.00 0.00 1.94
531 532 5.239963 ACACCGTTTGAGATTACCGAAAAAT 59.760 36.000 0.00 0.00 0.00 1.82
532 533 5.567534 CACCGTTTGAGATTACCGAAAAATG 59.432 40.000 0.00 0.00 0.00 2.32
533 534 5.239963 ACCGTTTGAGATTACCGAAAAATGT 59.760 36.000 0.00 0.00 0.00 2.71
534 535 6.427547 ACCGTTTGAGATTACCGAAAAATGTA 59.572 34.615 0.00 0.00 0.00 2.29
535 536 7.120138 ACCGTTTGAGATTACCGAAAAATGTAT 59.880 33.333 0.00 0.00 0.00 2.29
536 537 8.605746 CCGTTTGAGATTACCGAAAAATGTATA 58.394 33.333 0.00 0.00 0.00 1.47
537 538 9.632969 CGTTTGAGATTACCGAAAAATGTATAG 57.367 33.333 0.00 0.00 0.00 1.31
548 549 9.418045 ACCGAAAAATGTATAGAAAACCAATTG 57.582 29.630 0.00 0.00 0.00 2.32
549 550 9.632807 CCGAAAAATGTATAGAAAACCAATTGA 57.367 29.630 7.12 0.00 0.00 2.57
563 564 3.689347 CCAATTGAGAATGGTGTGAGGA 58.311 45.455 7.12 0.00 31.84 3.71
564 565 3.693085 CCAATTGAGAATGGTGTGAGGAG 59.307 47.826 7.12 0.00 31.84 3.69
565 566 3.641434 ATTGAGAATGGTGTGAGGAGG 57.359 47.619 0.00 0.00 0.00 4.30
566 567 2.325661 TGAGAATGGTGTGAGGAGGA 57.674 50.000 0.00 0.00 0.00 3.71
567 568 2.619931 TGAGAATGGTGTGAGGAGGAA 58.380 47.619 0.00 0.00 0.00 3.36
568 569 2.978978 TGAGAATGGTGTGAGGAGGAAA 59.021 45.455 0.00 0.00 0.00 3.13
569 570 3.394274 TGAGAATGGTGTGAGGAGGAAAA 59.606 43.478 0.00 0.00 0.00 2.29
570 571 4.141274 TGAGAATGGTGTGAGGAGGAAAAA 60.141 41.667 0.00 0.00 0.00 1.94
592 593 1.574428 CGAAGGACAAGGCGTTTGG 59.426 57.895 6.72 0.00 41.25 3.28
593 594 0.882927 CGAAGGACAAGGCGTTTGGA 60.883 55.000 6.72 0.00 41.25 3.53
594 595 1.534729 GAAGGACAAGGCGTTTGGAT 58.465 50.000 6.72 0.00 41.25 3.41
595 596 1.886542 GAAGGACAAGGCGTTTGGATT 59.113 47.619 6.72 0.00 41.25 3.01
596 597 1.995376 AGGACAAGGCGTTTGGATTT 58.005 45.000 6.72 0.00 41.25 2.17
597 598 3.149005 AGGACAAGGCGTTTGGATTTA 57.851 42.857 6.72 0.00 41.25 1.40
598 599 3.081804 AGGACAAGGCGTTTGGATTTAG 58.918 45.455 6.72 0.00 41.25 1.85
599 600 2.817844 GGACAAGGCGTTTGGATTTAGT 59.182 45.455 6.72 0.00 41.25 2.24
600 601 3.254903 GGACAAGGCGTTTGGATTTAGTT 59.745 43.478 6.72 0.00 41.25 2.24
601 602 4.261867 GGACAAGGCGTTTGGATTTAGTTT 60.262 41.667 6.72 0.00 41.25 2.66
602 603 4.616953 ACAAGGCGTTTGGATTTAGTTTG 58.383 39.130 6.72 0.00 41.25 2.93
603 604 4.098807 ACAAGGCGTTTGGATTTAGTTTGT 59.901 37.500 6.72 0.00 41.25 2.83
604 605 5.299782 ACAAGGCGTTTGGATTTAGTTTGTA 59.700 36.000 6.72 0.00 41.25 2.41
605 606 5.366829 AGGCGTTTGGATTTAGTTTGTAC 57.633 39.130 0.00 0.00 0.00 2.90
606 607 5.067954 AGGCGTTTGGATTTAGTTTGTACT 58.932 37.500 0.00 0.00 38.44 2.73
607 608 5.533528 AGGCGTTTGGATTTAGTTTGTACTT 59.466 36.000 0.00 0.00 35.78 2.24
608 609 5.854866 GGCGTTTGGATTTAGTTTGTACTTC 59.145 40.000 0.00 0.00 35.78 3.01
609 610 5.854866 GCGTTTGGATTTAGTTTGTACTTCC 59.145 40.000 0.00 0.00 35.78 3.46
610 611 6.293790 GCGTTTGGATTTAGTTTGTACTTCCT 60.294 38.462 0.00 0.00 35.78 3.36
611 612 7.295930 CGTTTGGATTTAGTTTGTACTTCCTC 58.704 38.462 0.00 0.00 35.78 3.71
612 613 7.572539 CGTTTGGATTTAGTTTGTACTTCCTCC 60.573 40.741 0.00 0.00 35.78 4.30
613 614 5.484715 TGGATTTAGTTTGTACTTCCTCCG 58.515 41.667 0.00 0.00 35.78 4.63
614 615 5.012354 TGGATTTAGTTTGTACTTCCTCCGT 59.988 40.000 0.00 0.00 35.78 4.69
615 616 6.211184 TGGATTTAGTTTGTACTTCCTCCGTA 59.789 38.462 0.00 0.00 35.78 4.02
616 617 7.099120 GGATTTAGTTTGTACTTCCTCCGTAA 58.901 38.462 0.00 0.00 35.78 3.18
617 618 7.603784 GGATTTAGTTTGTACTTCCTCCGTAAA 59.396 37.037 0.00 0.00 35.78 2.01
618 619 7.951530 TTTAGTTTGTACTTCCTCCGTAAAG 57.048 36.000 0.00 0.00 35.78 1.85
619 620 5.796424 AGTTTGTACTTCCTCCGTAAAGA 57.204 39.130 0.00 0.00 0.00 2.52
620 621 6.165700 AGTTTGTACTTCCTCCGTAAAGAA 57.834 37.500 0.00 0.00 0.00 2.52
621 622 6.585416 AGTTTGTACTTCCTCCGTAAAGAAA 58.415 36.000 0.00 0.00 0.00 2.52
622 623 7.222161 AGTTTGTACTTCCTCCGTAAAGAAAT 58.778 34.615 0.00 0.00 0.00 2.17
623 624 8.370182 AGTTTGTACTTCCTCCGTAAAGAAATA 58.630 33.333 0.00 0.00 0.00 1.40
624 625 9.159364 GTTTGTACTTCCTCCGTAAAGAAATAT 57.841 33.333 0.00 0.00 0.00 1.28
661 662 9.733219 AGATCACTAAAGTAGTAATCTAAACGC 57.267 33.333 0.03 0.00 41.03 4.84
662 663 9.733219 GATCACTAAAGTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 37.23 5.07
663 664 8.906636 TCACTAAAGTAGTAATCTAAACGCTG 57.093 34.615 0.00 0.00 37.23 5.18
664 665 8.733458 TCACTAAAGTAGTAATCTAAACGCTGA 58.267 33.333 0.00 0.00 37.23 4.26
665 666 9.011407 CACTAAAGTAGTAATCTAAACGCTGAG 57.989 37.037 0.00 0.00 37.23 3.35
666 667 8.954350 ACTAAAGTAGTAATCTAAACGCTGAGA 58.046 33.333 0.00 0.00 37.23 3.27
667 668 9.440784 CTAAAGTAGTAATCTAAACGCTGAGAG 57.559 37.037 0.00 0.00 0.00 3.20
668 669 5.823353 AGTAGTAATCTAAACGCTGAGAGC 58.177 41.667 0.00 0.00 38.02 4.09
669 670 4.993029 AGTAATCTAAACGCTGAGAGCT 57.007 40.909 0.00 0.00 39.60 4.09
670 671 4.927422 AGTAATCTAAACGCTGAGAGCTC 58.073 43.478 5.27 5.27 39.60 4.09
671 672 4.642885 AGTAATCTAAACGCTGAGAGCTCT 59.357 41.667 18.28 18.28 39.60 4.09
672 673 4.464069 AATCTAAACGCTGAGAGCTCTT 57.536 40.909 19.36 1.95 39.60 2.85
673 674 5.584253 AATCTAAACGCTGAGAGCTCTTA 57.416 39.130 19.36 13.44 39.60 2.10
674 675 5.782893 ATCTAAACGCTGAGAGCTCTTAT 57.217 39.130 19.36 0.33 39.60 1.73
675 676 6.885952 ATCTAAACGCTGAGAGCTCTTATA 57.114 37.500 19.36 6.89 39.60 0.98
676 677 6.885952 TCTAAACGCTGAGAGCTCTTATAT 57.114 37.500 19.36 3.80 39.60 0.86
677 678 7.278461 TCTAAACGCTGAGAGCTCTTATATT 57.722 36.000 19.36 10.97 39.60 1.28
678 679 7.717568 TCTAAACGCTGAGAGCTCTTATATTT 58.282 34.615 19.36 16.16 39.60 1.40
679 680 6.836577 AAACGCTGAGAGCTCTTATATTTC 57.163 37.500 19.36 3.65 39.60 2.17
680 681 5.782893 ACGCTGAGAGCTCTTATATTTCT 57.217 39.130 19.36 0.00 39.60 2.52
681 682 6.155475 ACGCTGAGAGCTCTTATATTTCTT 57.845 37.500 19.36 0.00 39.60 2.52
682 683 5.982516 ACGCTGAGAGCTCTTATATTTCTTG 59.017 40.000 19.36 0.06 39.60 3.02
683 684 6.183360 ACGCTGAGAGCTCTTATATTTCTTGA 60.183 38.462 19.36 0.00 39.60 3.02
684 685 6.363088 CGCTGAGAGCTCTTATATTTCTTGAG 59.637 42.308 19.36 0.00 39.60 3.02
685 686 7.209475 GCTGAGAGCTCTTATATTTCTTGAGT 58.791 38.462 19.36 0.00 38.45 3.41
686 687 8.356657 GCTGAGAGCTCTTATATTTCTTGAGTA 58.643 37.037 19.36 0.00 38.45 2.59
687 688 9.677567 CTGAGAGCTCTTATATTTCTTGAGTAC 57.322 37.037 19.36 0.00 0.00 2.73
688 689 9.190317 TGAGAGCTCTTATATTTCTTGAGTACA 57.810 33.333 19.36 1.53 0.00 2.90
704 705 8.084590 CTTGAGTACAAGTTTCCTTATTTCGT 57.915 34.615 0.00 0.00 45.73 3.85
705 706 9.199982 CTTGAGTACAAGTTTCCTTATTTCGTA 57.800 33.333 0.00 0.00 45.73 3.43
706 707 8.752766 TGAGTACAAGTTTCCTTATTTCGTAG 57.247 34.615 0.00 0.00 0.00 3.51
707 708 8.362639 TGAGTACAAGTTTCCTTATTTCGTAGT 58.637 33.333 0.00 0.00 0.00 2.73
708 709 9.846248 GAGTACAAGTTTCCTTATTTCGTAGTA 57.154 33.333 0.00 0.00 0.00 1.82
757 758 8.614469 AAAAAGTTTGTGGATGAAGTTTGAAA 57.386 26.923 0.00 0.00 30.94 2.69
758 759 7.832503 AAAGTTTGTGGATGAAGTTTGAAAG 57.167 32.000 0.00 0.00 29.73 2.62
759 760 6.530019 AGTTTGTGGATGAAGTTTGAAAGT 57.470 33.333 0.00 0.00 0.00 2.66
760 761 6.935167 AGTTTGTGGATGAAGTTTGAAAGTT 58.065 32.000 0.00 0.00 0.00 2.66
761 762 7.386059 AGTTTGTGGATGAAGTTTGAAAGTTT 58.614 30.769 0.00 0.00 0.00 2.66
762 763 7.877612 AGTTTGTGGATGAAGTTTGAAAGTTTT 59.122 29.630 0.00 0.00 0.00 2.43
763 764 7.593875 TTGTGGATGAAGTTTGAAAGTTTTG 57.406 32.000 0.00 0.00 0.00 2.44
764 765 5.580297 TGTGGATGAAGTTTGAAAGTTTTGC 59.420 36.000 0.00 0.00 0.00 3.68
765 766 5.580297 GTGGATGAAGTTTGAAAGTTTTGCA 59.420 36.000 0.00 0.42 0.00 4.08
766 767 5.811613 TGGATGAAGTTTGAAAGTTTTGCAG 59.188 36.000 0.00 0.00 0.00 4.41
767 768 6.042143 GGATGAAGTTTGAAAGTTTTGCAGA 58.958 36.000 0.00 0.00 0.00 4.26
768 769 6.534793 GGATGAAGTTTGAAAGTTTTGCAGAA 59.465 34.615 0.00 0.00 0.00 3.02
769 770 6.704512 TGAAGTTTGAAAGTTTTGCAGAAC 57.295 33.333 12.01 12.01 0.00 3.01
770 771 5.637387 TGAAGTTTGAAAGTTTTGCAGAACC 59.363 36.000 15.93 2.57 0.00 3.62
771 772 5.405935 AGTTTGAAAGTTTTGCAGAACCT 57.594 34.783 15.93 0.62 0.00 3.50
772 773 5.170748 AGTTTGAAAGTTTTGCAGAACCTG 58.829 37.500 15.93 0.00 34.12 4.00
773 774 5.047377 AGTTTGAAAGTTTTGCAGAACCTGA 60.047 36.000 15.93 0.00 32.44 3.86
774 775 5.398603 TTGAAAGTTTTGCAGAACCTGAA 57.601 34.783 15.93 2.54 32.44 3.02
775 776 5.398603 TGAAAGTTTTGCAGAACCTGAAA 57.601 34.783 15.93 0.00 32.44 2.69
776 777 5.167845 TGAAAGTTTTGCAGAACCTGAAAC 58.832 37.500 15.93 8.01 32.18 2.78
777 778 5.047377 TGAAAGTTTTGCAGAACCTGAAACT 60.047 36.000 15.93 10.13 38.94 2.66
778 779 4.376340 AGTTTTGCAGAACCTGAAACTG 57.624 40.909 15.93 0.00 37.24 3.16
779 780 4.016444 AGTTTTGCAGAACCTGAAACTGA 58.984 39.130 15.93 0.00 37.24 3.41
780 781 4.646492 AGTTTTGCAGAACCTGAAACTGAT 59.354 37.500 15.93 0.00 37.24 2.90
781 782 4.572985 TTTGCAGAACCTGAAACTGATG 57.427 40.909 0.00 0.00 27.25 3.07
782 783 3.213206 TGCAGAACCTGAAACTGATGT 57.787 42.857 0.00 0.00 32.44 3.06
783 784 3.554934 TGCAGAACCTGAAACTGATGTT 58.445 40.909 0.00 0.00 32.44 2.71
784 785 3.565482 TGCAGAACCTGAAACTGATGTTC 59.435 43.478 0.00 0.00 36.45 3.18
785 786 3.565482 GCAGAACCTGAAACTGATGTTCA 59.435 43.478 0.00 0.00 38.17 3.18
786 787 4.320057 GCAGAACCTGAAACTGATGTTCAG 60.320 45.833 7.11 7.11 41.05 3.02
787 788 5.059161 CAGAACCTGAAACTGATGTTCAGA 58.941 41.667 14.22 0.00 39.14 3.27
788 789 5.704515 CAGAACCTGAAACTGATGTTCAGAT 59.295 40.000 14.22 4.47 39.14 2.90
789 790 6.128336 CAGAACCTGAAACTGATGTTCAGATC 60.128 42.308 14.22 11.69 39.14 2.75
790 791 8.433812 CAGAACCTGAAACTGATGTTCAGATCA 61.434 40.741 14.22 12.45 39.14 2.92
835 841 4.467795 TGTGTGAAAGGTTTGATCCCAAAA 59.532 37.500 0.00 0.00 43.18 2.44
846 852 5.782893 TTGATCCCAAAACTACTGGTTTG 57.217 39.130 0.09 0.09 46.18 2.93
865 873 3.428413 TGGGGGTAAAAAGCTCTACAC 57.572 47.619 0.00 0.00 0.00 2.90
867 875 2.289882 GGGGGTAAAAAGCTCTACACGT 60.290 50.000 0.00 0.00 0.00 4.49
879 887 2.747989 CTCTACACGTCCAAGACTGCTA 59.252 50.000 0.00 0.00 0.00 3.49
903 911 1.295645 CGCGTGCGAACGTAAATCC 60.296 57.895 18.93 0.00 42.83 3.01
908 916 1.347221 GCGAACGTAAATCCCAGCG 59.653 57.895 0.00 0.00 0.00 5.18
909 917 1.079875 GCGAACGTAAATCCCAGCGA 61.080 55.000 0.00 0.00 0.00 4.93
912 920 2.613691 GAACGTAAATCCCAGCGAAGA 58.386 47.619 0.00 0.00 0.00 2.87
913 921 2.754946 ACGTAAATCCCAGCGAAGAA 57.245 45.000 0.00 0.00 0.00 2.52
921 929 0.179150 CCCAGCGAAGAAGAGTCGAG 60.179 60.000 0.00 0.00 41.02 4.04
922 930 0.523966 CCAGCGAAGAAGAGTCGAGT 59.476 55.000 0.00 0.00 41.02 4.18
924 932 0.806241 AGCGAAGAAGAGTCGAGTCC 59.194 55.000 16.67 2.55 41.02 3.85
1409 1417 1.067635 GGCGGTGAAGCATTGATTTGT 60.068 47.619 0.00 0.00 39.27 2.83
1599 1611 4.079253 TGAAGATTGCAAGGGAGGTAAAC 58.921 43.478 4.94 0.00 0.00 2.01
1607 1623 3.146847 CAAGGGAGGTAAACCACTCAAC 58.853 50.000 1.26 0.00 38.89 3.18
1616 1632 3.312736 AAACCACTCAACCATTCACCT 57.687 42.857 0.00 0.00 0.00 4.00
1619 1635 2.154462 CCACTCAACCATTCACCTCAC 58.846 52.381 0.00 0.00 0.00 3.51
1622 1638 2.154462 CTCAACCATTCACCTCACCAC 58.846 52.381 0.00 0.00 0.00 4.16
1626 1642 1.704628 ACCATTCACCTCACCACATCA 59.295 47.619 0.00 0.00 0.00 3.07
1663 1681 2.444696 CCAATTGGCCCCTGACCA 59.555 61.111 12.53 0.00 34.65 4.02
1691 1713 4.118480 GGCATGAACCGCGATGTA 57.882 55.556 8.23 0.00 0.00 2.29
1693 1715 0.235665 GGCATGAACCGCGATGTATG 59.764 55.000 8.23 8.33 0.00 2.39
1694 1716 0.937304 GCATGAACCGCGATGTATGT 59.063 50.000 8.23 0.00 0.00 2.29
1695 1717 2.131972 GCATGAACCGCGATGTATGTA 58.868 47.619 8.23 0.00 0.00 2.29
1696 1718 2.096909 GCATGAACCGCGATGTATGTAC 60.097 50.000 8.23 0.00 0.00 2.90
2026 2048 4.343526 AGAACAAGCTGGACTCGATATGAT 59.656 41.667 0.00 0.00 0.00 2.45
2027 2049 4.679373 ACAAGCTGGACTCGATATGATT 57.321 40.909 0.00 0.00 0.00 2.57
2029 2051 6.161855 ACAAGCTGGACTCGATATGATTAA 57.838 37.500 0.00 0.00 0.00 1.40
2069 2094 6.013553 CAGGTAGATCCATGGAGAAATGAGAT 60.014 42.308 21.33 0.00 39.02 2.75
2097 2122 3.190327 TGAATTTTGATGTAGCCACGGTG 59.810 43.478 0.00 0.00 0.00 4.94
2125 2150 1.493950 GAACCAGCTGCCATCGATCG 61.494 60.000 9.36 9.36 0.00 3.69
2126 2151 2.107750 CCAGCTGCCATCGATCGT 59.892 61.111 15.94 0.00 0.00 3.73
2127 2152 1.363807 CCAGCTGCCATCGATCGTA 59.636 57.895 15.94 2.15 0.00 3.43
2128 2153 0.941463 CCAGCTGCCATCGATCGTAC 60.941 60.000 15.94 3.87 0.00 3.67
2129 2154 0.249031 CAGCTGCCATCGATCGTACA 60.249 55.000 15.94 8.29 0.00 2.90
2130 2155 0.676184 AGCTGCCATCGATCGTACAT 59.324 50.000 15.94 0.00 0.00 2.29
2131 2156 1.069204 AGCTGCCATCGATCGTACATT 59.931 47.619 15.94 0.00 0.00 2.71
2132 2157 1.457303 GCTGCCATCGATCGTACATTC 59.543 52.381 15.94 1.84 0.00 2.67
2194 2226 2.224621 GGCTGCTATCTCCCTTATTGCA 60.225 50.000 0.00 0.00 34.65 4.08
2196 2228 3.072944 CTGCTATCTCCCTTATTGCAGC 58.927 50.000 6.58 0.00 42.96 5.25
2212 2244 0.041839 CAGCGTTCTTGCAGTGTGAC 60.042 55.000 0.00 0.00 37.31 3.67
2220 2252 0.946528 TTGCAGTGTGACATGAGTGC 59.053 50.000 0.00 1.97 0.00 4.40
2251 2290 5.046529 ACATCAGAAGCTTGTAAGATAGCG 58.953 41.667 2.10 0.00 42.18 4.26
2253 2292 2.217393 CAGAAGCTTGTAAGATAGCGCG 59.783 50.000 2.10 0.00 42.18 6.86
2261 2300 3.381045 TGTAAGATAGCGCGAGATTTGG 58.619 45.455 12.10 0.00 0.00 3.28
2316 2355 6.811954 TGTGGCACATTCTCGATTACTAATA 58.188 36.000 17.96 0.00 44.52 0.98
2439 3870 8.702408 CACATTTGTGCTTGAATTTTTACATG 57.298 30.769 0.00 0.00 39.39 3.21
2592 4026 1.452108 GGATTGCCTGAACTCCCCG 60.452 63.158 0.00 0.00 0.00 5.73
2598 4032 1.262640 GCCTGAACTCCCCGGAACTA 61.263 60.000 0.73 0.00 0.00 2.24
2606 4040 1.838077 CTCCCCGGAACTAAGTCCATT 59.162 52.381 0.73 0.00 37.56 3.16
2618 4052 2.887151 AGTCCATTTGTGAGGAAGGG 57.113 50.000 0.00 0.00 35.29 3.95
2655 4091 4.181010 CCATCAGGCCGGTCCAGG 62.181 72.222 15.92 3.69 37.29 4.45
2656 4092 3.402681 CATCAGGCCGGTCCAGGT 61.403 66.667 15.92 2.78 37.29 4.00
2659 4095 4.162690 CAGGCCGGTCCAGGTAGC 62.163 72.222 15.92 0.00 37.29 3.58
2673 4109 1.760875 GTAGCCGATCCTCACCCCA 60.761 63.158 0.00 0.00 0.00 4.96
2676 4112 1.452108 GCCGATCCTCACCCCAAAG 60.452 63.158 0.00 0.00 0.00 2.77
2677 4113 1.452108 CCGATCCTCACCCCAAAGC 60.452 63.158 0.00 0.00 0.00 3.51
2709 4158 3.646715 CTTCCTCCCCAACCCGCA 61.647 66.667 0.00 0.00 0.00 5.69
2727 4176 0.323725 CACTTGATTCCCACCCCCAG 60.324 60.000 0.00 0.00 0.00 4.45
2729 4178 2.861271 CTTGATTCCCACCCCCAGCC 62.861 65.000 0.00 0.00 0.00 4.85
2742 4191 0.607489 CCCAGCCCTGTTCTTCACTG 60.607 60.000 0.00 0.00 0.00 3.66
2748 4197 0.250640 CCTGTTCTTCACTGCCTGCT 60.251 55.000 0.00 0.00 0.00 4.24
2752 4201 2.368548 TGTTCTTCACTGCCTGCTTCTA 59.631 45.455 0.00 0.00 0.00 2.10
2755 4204 5.178797 GTTCTTCACTGCCTGCTTCTATTA 58.821 41.667 0.00 0.00 0.00 0.98
2761 4210 5.598417 TCACTGCCTGCTTCTATTATAGTCA 59.402 40.000 0.00 0.00 0.00 3.41
2767 4216 6.520742 GCCTGCTTCTATTATAGTCATTCCCA 60.521 42.308 0.00 0.00 0.00 4.37
2768 4217 7.628234 CCTGCTTCTATTATAGTCATTCCCAT 58.372 38.462 0.00 0.00 0.00 4.00
2775 4224 6.959639 ATTATAGTCATTCCCATTTGCGTT 57.040 33.333 0.00 0.00 0.00 4.84
2785 4234 2.481104 CCCATTTGCGTTGTCACTGTTT 60.481 45.455 0.00 0.00 0.00 2.83
2827 4277 0.527817 CGACACCCGGAGCTATGAAC 60.528 60.000 0.73 0.00 33.91 3.18
2989 4444 0.950836 TGTGCCTCCAACATTTGACG 59.049 50.000 0.00 0.00 0.00 4.35
2999 4454 3.379240 CAACATTTGACGTTGGCAATCA 58.621 40.909 1.92 0.50 40.05 2.57
3008 4463 4.119862 GACGTTGGCAATCAGATTAGCTA 58.880 43.478 1.92 7.95 0.00 3.32
3101 4585 9.938280 GTTGTGAATTAGCATGTACCCTATATA 57.062 33.333 0.00 0.00 0.00 0.86
3137 4621 9.523730 GACAAAAACGGTTTGAAATATTTATGC 57.476 29.630 17.61 0.00 33.83 3.14
3146 4630 9.076596 GGTTTGAAATATTTATGCAGAGTTCAC 57.923 33.333 0.00 0.00 0.00 3.18
3148 4632 7.015226 TGAAATATTTATGCAGAGTTCACGG 57.985 36.000 0.00 0.00 0.00 4.94
3192 4676 1.336148 ACACACCGCATCAAATTGCAG 60.336 47.619 0.00 0.00 42.91 4.41
3199 4683 2.098607 CGCATCAAATTGCAGGTGATCT 59.901 45.455 6.02 0.00 42.91 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.247562 GCATCATCTATCTCTTATTACGGTCTT 58.752 37.037 0.00 0.00 0.00 3.01
2 3 7.767261 AGCATCATCTATCTCTTATTACGGTC 58.233 38.462 0.00 0.00 0.00 4.79
3 4 7.710676 AGCATCATCTATCTCTTATTACGGT 57.289 36.000 0.00 0.00 0.00 4.83
4 5 8.349245 CCTAGCATCATCTATCTCTTATTACGG 58.651 40.741 0.00 0.00 0.00 4.02
5 6 8.898761 ACCTAGCATCATCTATCTCTTATTACG 58.101 37.037 0.00 0.00 0.00 3.18
7 8 9.981460 TCACCTAGCATCATCTATCTCTTATTA 57.019 33.333 0.00 0.00 0.00 0.98
8 9 8.891985 TCACCTAGCATCATCTATCTCTTATT 57.108 34.615 0.00 0.00 0.00 1.40
9 10 8.523915 CTCACCTAGCATCATCTATCTCTTAT 57.476 38.462 0.00 0.00 0.00 1.73
10 11 7.936496 CTCACCTAGCATCATCTATCTCTTA 57.064 40.000 0.00 0.00 0.00 2.10
11 12 6.839124 CTCACCTAGCATCATCTATCTCTT 57.161 41.667 0.00 0.00 0.00 2.85
26 27 0.179000 GTCATGTGGGGCTCACCTAG 59.821 60.000 16.28 4.77 45.48 3.02
27 28 0.546507 TGTCATGTGGGGCTCACCTA 60.547 55.000 16.28 0.00 45.48 3.08
28 29 1.847506 TGTCATGTGGGGCTCACCT 60.848 57.895 16.28 1.18 45.48 4.00
29 30 1.675641 GTGTCATGTGGGGCTCACC 60.676 63.158 16.28 0.00 45.48 4.02
30 31 2.034879 CGTGTCATGTGGGGCTCAC 61.035 63.158 11.49 11.49 46.23 3.51
31 32 2.347114 CGTGTCATGTGGGGCTCA 59.653 61.111 0.00 0.00 0.00 4.26
32 33 3.127533 GCGTGTCATGTGGGGCTC 61.128 66.667 0.00 0.00 0.00 4.70
35 36 3.118454 GACGCGTGTCATGTGGGG 61.118 66.667 20.70 0.00 44.82 4.96
43 44 0.248336 TCATCCGTATGACGCGTGTC 60.248 55.000 20.70 22.00 45.71 3.67
44 45 0.248498 CTCATCCGTATGACGCGTGT 60.248 55.000 20.70 7.90 40.91 4.49
45 46 0.934901 CCTCATCCGTATGACGCGTG 60.935 60.000 20.70 0.08 40.91 5.34
46 47 1.359117 CCTCATCCGTATGACGCGT 59.641 57.895 13.85 13.85 40.91 6.01
47 48 2.016704 GCCTCATCCGTATGACGCG 61.017 63.158 3.53 3.53 40.91 6.01
48 49 2.016704 CGCCTCATCCGTATGACGC 61.017 63.158 2.57 2.57 40.91 5.19
49 50 1.371758 CCGCCTCATCCGTATGACG 60.372 63.158 0.00 0.00 37.20 4.35
50 51 1.664965 GCCGCCTCATCCGTATGAC 60.665 63.158 0.00 0.00 37.20 3.06
51 52 2.734591 GCCGCCTCATCCGTATGA 59.265 61.111 0.00 0.00 39.87 2.15
52 53 2.734723 CGCCGCCTCATCCGTATG 60.735 66.667 0.00 0.00 0.00 2.39
53 54 3.991051 CCGCCGCCTCATCCGTAT 61.991 66.667 0.00 0.00 0.00 3.06
69 70 1.812507 GGATTGTACACGGGCGTCC 60.813 63.158 0.00 0.00 0.00 4.79
70 71 2.162754 CGGATTGTACACGGGCGTC 61.163 63.158 0.00 0.00 0.00 5.19
71 72 2.125832 CGGATTGTACACGGGCGT 60.126 61.111 0.00 0.00 0.00 5.68
72 73 2.125832 ACGGATTGTACACGGGCG 60.126 61.111 8.91 0.00 0.00 6.13
73 74 2.162754 CGACGGATTGTACACGGGC 61.163 63.158 8.91 0.00 0.00 6.13
74 75 1.517694 CCGACGGATTGTACACGGG 60.518 63.158 8.64 0.15 37.28 5.28
75 76 2.162754 GCCGACGGATTGTACACGG 61.163 63.158 20.50 14.19 42.63 4.94
76 77 1.153901 AGCCGACGGATTGTACACG 60.154 57.895 20.50 0.00 0.00 4.49
77 78 0.108992 TCAGCCGACGGATTGTACAC 60.109 55.000 20.50 0.00 0.00 2.90
78 79 0.604073 TTCAGCCGACGGATTGTACA 59.396 50.000 20.50 0.00 0.00 2.90
79 80 1.278238 CTTCAGCCGACGGATTGTAC 58.722 55.000 20.50 0.00 0.00 2.90
80 81 0.459585 GCTTCAGCCGACGGATTGTA 60.460 55.000 20.50 7.95 34.31 2.41
81 82 1.741770 GCTTCAGCCGACGGATTGT 60.742 57.895 20.50 0.00 34.31 2.71
82 83 0.179111 TAGCTTCAGCCGACGGATTG 60.179 55.000 20.50 15.04 43.38 2.67
83 84 0.535335 TTAGCTTCAGCCGACGGATT 59.465 50.000 20.50 0.97 43.38 3.01
84 85 0.103208 CTTAGCTTCAGCCGACGGAT 59.897 55.000 20.50 9.11 43.38 4.18
85 86 0.963856 TCTTAGCTTCAGCCGACGGA 60.964 55.000 20.50 0.00 43.38 4.69
86 87 0.103208 ATCTTAGCTTCAGCCGACGG 59.897 55.000 10.29 10.29 43.38 4.79
87 88 1.855360 GAATCTTAGCTTCAGCCGACG 59.145 52.381 0.00 0.00 43.38 5.12
88 89 3.120041 GAGAATCTTAGCTTCAGCCGAC 58.880 50.000 0.00 0.00 43.38 4.79
89 90 2.760650 TGAGAATCTTAGCTTCAGCCGA 59.239 45.455 0.00 0.00 37.72 5.54
90 91 2.863137 GTGAGAATCTTAGCTTCAGCCG 59.137 50.000 0.00 0.00 37.72 5.52
91 92 4.135747 AGTGAGAATCTTAGCTTCAGCC 57.864 45.455 0.00 0.00 37.72 4.85
92 93 6.493449 AAAAGTGAGAATCTTAGCTTCAGC 57.507 37.500 0.00 0.00 37.38 4.26
164 165 9.425248 TTTCCTAAATGATAAATGCCATCTCTT 57.575 29.630 0.00 0.00 0.00 2.85
165 166 9.425248 TTTTCCTAAATGATAAATGCCATCTCT 57.575 29.630 0.00 0.00 0.00 3.10
193 194 9.651913 AAATGCCATCTCGTAAAATAAAAATGT 57.348 25.926 0.00 0.00 0.00 2.71
232 233 9.933723 GCCATCTTTTAATATAAAATGCCATCT 57.066 29.630 0.00 0.00 0.00 2.90
233 234 9.709495 TGCCATCTTTTAATATAAAATGCCATC 57.291 29.630 0.00 0.00 0.00 3.51
289 290 8.956533 AAACAAAAAGTGGCAGTACAAATAAT 57.043 26.923 0.00 0.00 0.00 1.28
290 291 8.660373 CAAAACAAAAAGTGGCAGTACAAATAA 58.340 29.630 0.00 0.00 0.00 1.40
291 292 7.819900 ACAAAACAAAAAGTGGCAGTACAAATA 59.180 29.630 0.00 0.00 0.00 1.40
292 293 6.652900 ACAAAACAAAAAGTGGCAGTACAAAT 59.347 30.769 0.00 0.00 0.00 2.32
293 294 5.992217 ACAAAACAAAAAGTGGCAGTACAAA 59.008 32.000 0.00 0.00 0.00 2.83
294 295 5.406780 CACAAAACAAAAAGTGGCAGTACAA 59.593 36.000 0.00 0.00 0.00 2.41
295 296 4.926238 CACAAAACAAAAAGTGGCAGTACA 59.074 37.500 0.00 0.00 0.00 2.90
296 297 4.926832 ACACAAAACAAAAAGTGGCAGTAC 59.073 37.500 0.00 0.00 36.35 2.73
297 298 5.140747 ACACAAAACAAAAAGTGGCAGTA 57.859 34.783 0.00 0.00 36.35 2.74
298 299 4.001618 ACACAAAACAAAAAGTGGCAGT 57.998 36.364 0.00 0.00 36.35 4.40
299 300 5.406780 TGTAACACAAAACAAAAAGTGGCAG 59.593 36.000 0.00 0.00 36.35 4.85
300 301 5.177696 GTGTAACACAAAACAAAAAGTGGCA 59.822 36.000 0.00 0.00 36.35 4.92
301 302 5.177696 TGTGTAACACAAAACAAAAAGTGGC 59.822 36.000 0.00 0.00 45.67 5.01
302 303 6.771188 TGTGTAACACAAAACAAAAAGTGG 57.229 33.333 0.00 0.00 45.67 4.00
318 319 6.640907 GTCATCATCCAAAACCTTTGTGTAAC 59.359 38.462 0.00 0.00 37.35 2.50
319 320 6.549364 AGTCATCATCCAAAACCTTTGTGTAA 59.451 34.615 0.00 0.00 0.00 2.41
320 321 6.068010 AGTCATCATCCAAAACCTTTGTGTA 58.932 36.000 0.00 0.00 0.00 2.90
321 322 4.895297 AGTCATCATCCAAAACCTTTGTGT 59.105 37.500 0.00 0.00 0.00 3.72
322 323 5.458041 AGTCATCATCCAAAACCTTTGTG 57.542 39.130 0.00 0.00 0.00 3.33
323 324 5.711976 CCTAGTCATCATCCAAAACCTTTGT 59.288 40.000 0.00 0.00 0.00 2.83
324 325 5.945784 TCCTAGTCATCATCCAAAACCTTTG 59.054 40.000 0.00 0.00 0.00 2.77
325 326 6.139679 TCCTAGTCATCATCCAAAACCTTT 57.860 37.500 0.00 0.00 0.00 3.11
326 327 5.779241 TCCTAGTCATCATCCAAAACCTT 57.221 39.130 0.00 0.00 0.00 3.50
327 328 5.339530 CCTTCCTAGTCATCATCCAAAACCT 60.340 44.000 0.00 0.00 0.00 3.50
328 329 4.884164 CCTTCCTAGTCATCATCCAAAACC 59.116 45.833 0.00 0.00 0.00 3.27
329 330 5.355350 CACCTTCCTAGTCATCATCCAAAAC 59.645 44.000 0.00 0.00 0.00 2.43
330 331 5.500234 CACCTTCCTAGTCATCATCCAAAA 58.500 41.667 0.00 0.00 0.00 2.44
331 332 4.080356 CCACCTTCCTAGTCATCATCCAAA 60.080 45.833 0.00 0.00 0.00 3.28
332 333 3.455910 CCACCTTCCTAGTCATCATCCAA 59.544 47.826 0.00 0.00 0.00 3.53
333 334 3.041211 CCACCTTCCTAGTCATCATCCA 58.959 50.000 0.00 0.00 0.00 3.41
334 335 2.224402 GCCACCTTCCTAGTCATCATCC 60.224 54.545 0.00 0.00 0.00 3.51
335 336 2.435805 TGCCACCTTCCTAGTCATCATC 59.564 50.000 0.00 0.00 0.00 2.92
336 337 2.481441 TGCCACCTTCCTAGTCATCAT 58.519 47.619 0.00 0.00 0.00 2.45
337 338 1.951209 TGCCACCTTCCTAGTCATCA 58.049 50.000 0.00 0.00 0.00 3.07
338 339 3.567478 ATTGCCACCTTCCTAGTCATC 57.433 47.619 0.00 0.00 0.00 2.92
339 340 4.322057 AAATTGCCACCTTCCTAGTCAT 57.678 40.909 0.00 0.00 0.00 3.06
340 341 3.806949 AAATTGCCACCTTCCTAGTCA 57.193 42.857 0.00 0.00 0.00 3.41
341 342 4.280929 ACAAAAATTGCCACCTTCCTAGTC 59.719 41.667 0.00 0.00 0.00 2.59
342 343 4.039124 CACAAAAATTGCCACCTTCCTAGT 59.961 41.667 0.00 0.00 0.00 2.57
343 344 4.559153 CACAAAAATTGCCACCTTCCTAG 58.441 43.478 0.00 0.00 0.00 3.02
344 345 3.323403 CCACAAAAATTGCCACCTTCCTA 59.677 43.478 0.00 0.00 0.00 2.94
345 346 2.104622 CCACAAAAATTGCCACCTTCCT 59.895 45.455 0.00 0.00 0.00 3.36
346 347 2.493035 CCACAAAAATTGCCACCTTCC 58.507 47.619 0.00 0.00 0.00 3.46
347 348 1.872952 GCCACAAAAATTGCCACCTTC 59.127 47.619 0.00 0.00 0.00 3.46
348 349 1.211457 TGCCACAAAAATTGCCACCTT 59.789 42.857 0.00 0.00 0.00 3.50
349 350 0.835941 TGCCACAAAAATTGCCACCT 59.164 45.000 0.00 0.00 0.00 4.00
350 351 1.894881 ATGCCACAAAAATTGCCACC 58.105 45.000 0.00 0.00 0.00 4.61
351 352 3.986442 AAATGCCACAAAAATTGCCAC 57.014 38.095 0.00 0.00 0.00 5.01
352 353 4.400251 TGAAAAATGCCACAAAAATTGCCA 59.600 33.333 0.00 0.00 0.00 4.92
353 354 4.739228 GTGAAAAATGCCACAAAAATTGCC 59.261 37.500 0.00 0.00 33.72 4.52
354 355 5.580661 AGTGAAAAATGCCACAAAAATTGC 58.419 33.333 0.00 0.00 35.84 3.56
355 356 7.643371 GGTTAGTGAAAAATGCCACAAAAATTG 59.357 33.333 0.00 0.00 35.84 2.32
356 357 7.466590 CGGTTAGTGAAAAATGCCACAAAAATT 60.467 33.333 0.00 0.00 35.84 1.82
357 358 6.018343 CGGTTAGTGAAAAATGCCACAAAAAT 60.018 34.615 0.00 0.00 35.84 1.82
358 359 5.292101 CGGTTAGTGAAAAATGCCACAAAAA 59.708 36.000 0.00 0.00 35.84 1.94
359 360 4.806247 CGGTTAGTGAAAAATGCCACAAAA 59.194 37.500 0.00 0.00 35.84 2.44
360 361 4.142138 ACGGTTAGTGAAAAATGCCACAAA 60.142 37.500 0.00 0.00 35.84 2.83
361 362 3.381908 ACGGTTAGTGAAAAATGCCACAA 59.618 39.130 0.00 0.00 35.84 3.33
362 363 2.952978 ACGGTTAGTGAAAAATGCCACA 59.047 40.909 0.00 0.00 35.84 4.17
363 364 3.636282 ACGGTTAGTGAAAAATGCCAC 57.364 42.857 0.00 0.00 0.00 5.01
375 376 4.864704 ATTTCAAATTGCCACGGTTAGT 57.135 36.364 0.00 0.00 0.00 2.24
376 377 7.596995 TCTTTTATTTCAAATTGCCACGGTTAG 59.403 33.333 0.00 0.00 0.00 2.34
377 378 7.434492 TCTTTTATTTCAAATTGCCACGGTTA 58.566 30.769 0.00 0.00 0.00 2.85
378 379 6.284459 TCTTTTATTTCAAATTGCCACGGTT 58.716 32.000 0.00 0.00 0.00 4.44
379 380 5.848406 TCTTTTATTTCAAATTGCCACGGT 58.152 33.333 0.00 0.00 0.00 4.83
380 381 6.777526 TTCTTTTATTTCAAATTGCCACGG 57.222 33.333 0.00 0.00 0.00 4.94
381 382 9.662545 ATTTTTCTTTTATTTCAAATTGCCACG 57.337 25.926 0.00 0.00 0.00 4.94
395 396 9.938280 GGCCCAGTTAAAGTATTTTTCTTTTAT 57.062 29.630 0.00 0.00 40.09 1.40
396 397 8.925338 TGGCCCAGTTAAAGTATTTTTCTTTTA 58.075 29.630 0.00 0.00 40.09 1.52
397 398 7.797062 TGGCCCAGTTAAAGTATTTTTCTTTT 58.203 30.769 0.00 0.00 40.09 2.27
398 399 7.368198 TGGCCCAGTTAAAGTATTTTTCTTT 57.632 32.000 0.00 0.00 40.09 2.52
399 400 6.987403 TGGCCCAGTTAAAGTATTTTTCTT 57.013 33.333 0.00 0.00 40.09 2.52
400 401 7.553504 AATGGCCCAGTTAAAGTATTTTTCT 57.446 32.000 0.00 0.00 40.09 2.52
401 402 8.615878 AAAATGGCCCAGTTAAAGTATTTTTC 57.384 30.769 0.00 0.00 40.09 2.29
402 403 8.845227 CAAAAATGGCCCAGTTAAAGTATTTTT 58.155 29.630 0.00 5.19 40.09 1.94
403 404 7.446931 CCAAAAATGGCCCAGTTAAAGTATTTT 59.553 33.333 0.00 0.00 40.09 1.82
404 405 6.939730 CCAAAAATGGCCCAGTTAAAGTATTT 59.060 34.615 0.00 0.00 43.42 1.40
405 406 6.043822 ACCAAAAATGGCCCAGTTAAAGTATT 59.956 34.615 0.00 0.00 0.00 1.89
406 407 5.546110 ACCAAAAATGGCCCAGTTAAAGTAT 59.454 36.000 0.00 0.00 0.00 2.12
407 408 4.902448 ACCAAAAATGGCCCAGTTAAAGTA 59.098 37.500 0.00 0.00 0.00 2.24
408 409 3.714280 ACCAAAAATGGCCCAGTTAAAGT 59.286 39.130 0.00 0.00 0.00 2.66
409 410 4.040339 AGACCAAAAATGGCCCAGTTAAAG 59.960 41.667 0.00 0.00 0.00 1.85
410 411 3.970640 AGACCAAAAATGGCCCAGTTAAA 59.029 39.130 0.00 0.00 0.00 1.52
411 412 3.576550 GAGACCAAAAATGGCCCAGTTAA 59.423 43.478 0.00 0.00 0.00 2.01
412 413 3.161866 GAGACCAAAAATGGCCCAGTTA 58.838 45.455 0.00 0.00 0.00 2.24
413 414 1.970640 GAGACCAAAAATGGCCCAGTT 59.029 47.619 0.00 0.00 0.00 3.16
414 415 1.632589 GAGACCAAAAATGGCCCAGT 58.367 50.000 0.00 0.00 0.00 4.00
415 416 0.527565 CGAGACCAAAAATGGCCCAG 59.472 55.000 0.00 0.00 0.00 4.45
416 417 0.897863 CCGAGACCAAAAATGGCCCA 60.898 55.000 0.00 0.00 0.00 5.36
417 418 0.610785 TCCGAGACCAAAAATGGCCC 60.611 55.000 0.00 0.00 0.00 5.80
418 419 0.811281 CTCCGAGACCAAAAATGGCC 59.189 55.000 0.00 0.00 0.00 5.36
419 420 0.811281 CCTCCGAGACCAAAAATGGC 59.189 55.000 0.00 0.00 0.00 4.40
420 421 0.811281 GCCTCCGAGACCAAAAATGG 59.189 55.000 0.00 0.00 0.00 3.16
421 422 0.447801 CGCCTCCGAGACCAAAAATG 59.552 55.000 0.00 0.00 36.29 2.32
422 423 1.305930 GCGCCTCCGAGACCAAAAAT 61.306 55.000 0.00 0.00 36.29 1.82
423 424 1.964373 GCGCCTCCGAGACCAAAAA 60.964 57.895 0.00 0.00 36.29 1.94
424 425 2.358247 GCGCCTCCGAGACCAAAA 60.358 61.111 0.00 0.00 36.29 2.44
425 426 4.388499 GGCGCCTCCGAGACCAAA 62.388 66.667 22.15 0.00 36.29 3.28
446 447 4.697756 TGTTTGCCCGGGAGCGAG 62.698 66.667 29.31 0.00 34.65 5.03
447 448 4.257654 TTGTTTGCCCGGGAGCGA 62.258 61.111 29.31 6.60 34.65 4.93
448 449 4.038080 GTTGTTTGCCCGGGAGCG 62.038 66.667 29.31 0.00 34.65 5.03
449 450 3.680786 GGTTGTTTGCCCGGGAGC 61.681 66.667 29.31 10.90 0.00 4.70
450 451 2.203422 TGGTTGTTTGCCCGGGAG 60.203 61.111 29.31 0.00 0.00 4.30
451 452 2.203422 CTGGTTGTTTGCCCGGGA 60.203 61.111 29.31 6.60 0.00 5.14
452 453 1.395826 TTTCTGGTTGTTTGCCCGGG 61.396 55.000 19.09 19.09 0.00 5.73
453 454 0.249280 GTTTCTGGTTGTTTGCCCGG 60.249 55.000 0.00 0.00 0.00 5.73
454 455 0.457851 TGTTTCTGGTTGTTTGCCCG 59.542 50.000 0.00 0.00 0.00 6.13
455 456 2.908688 ATGTTTCTGGTTGTTTGCCC 57.091 45.000 0.00 0.00 0.00 5.36
456 457 3.242706 GCAAATGTTTCTGGTTGTTTGCC 60.243 43.478 8.89 0.00 43.18 4.52
457 458 3.622612 AGCAAATGTTTCTGGTTGTTTGC 59.377 39.130 11.43 11.43 46.96 3.68
458 459 6.479660 ACATAGCAAATGTTTCTGGTTGTTTG 59.520 34.615 0.00 0.00 0.00 2.93
459 460 6.479660 CACATAGCAAATGTTTCTGGTTGTTT 59.520 34.615 2.20 0.00 0.00 2.83
460 461 5.984926 CACATAGCAAATGTTTCTGGTTGTT 59.015 36.000 2.20 0.00 0.00 2.83
461 462 5.068987 ACACATAGCAAATGTTTCTGGTTGT 59.931 36.000 2.20 0.00 0.00 3.32
462 463 5.531634 ACACATAGCAAATGTTTCTGGTTG 58.468 37.500 2.20 0.00 0.00 3.77
463 464 5.789643 ACACATAGCAAATGTTTCTGGTT 57.210 34.783 2.20 0.00 0.00 3.67
464 465 5.767665 TGTACACATAGCAAATGTTTCTGGT 59.232 36.000 2.20 1.05 0.00 4.00
465 466 6.252967 TGTACACATAGCAAATGTTTCTGG 57.747 37.500 2.20 0.00 0.00 3.86
466 467 7.201376 GCAATGTACACATAGCAAATGTTTCTG 60.201 37.037 0.00 0.00 35.10 3.02
467 468 6.808212 GCAATGTACACATAGCAAATGTTTCT 59.192 34.615 0.00 0.00 35.10 2.52
468 469 6.808212 AGCAATGTACACATAGCAAATGTTTC 59.192 34.615 0.00 0.00 35.10 2.78
469 470 6.690530 AGCAATGTACACATAGCAAATGTTT 58.309 32.000 0.00 0.00 35.10 2.83
470 471 6.271488 AGCAATGTACACATAGCAAATGTT 57.729 33.333 0.00 0.00 35.10 2.71
471 472 5.902613 AGCAATGTACACATAGCAAATGT 57.097 34.783 0.00 0.00 35.10 2.71
472 473 7.585286 AAAAGCAATGTACACATAGCAAATG 57.415 32.000 0.00 0.00 35.10 2.32
497 498 5.122512 TCTCAAACGGTGTTGAACAAAAA 57.877 34.783 0.00 0.00 37.08 1.94
498 499 4.768130 TCTCAAACGGTGTTGAACAAAA 57.232 36.364 0.00 0.00 37.08 2.44
499 500 4.974368 ATCTCAAACGGTGTTGAACAAA 57.026 36.364 0.00 0.00 37.08 2.83
500 501 4.974368 AATCTCAAACGGTGTTGAACAA 57.026 36.364 0.00 0.00 37.08 2.83
501 502 4.273969 GGTAATCTCAAACGGTGTTGAACA 59.726 41.667 0.00 0.00 37.08 3.18
502 503 4.609783 CGGTAATCTCAAACGGTGTTGAAC 60.610 45.833 0.00 0.00 37.08 3.18
503 504 3.495377 CGGTAATCTCAAACGGTGTTGAA 59.505 43.478 7.02 1.66 37.08 2.69
504 505 3.061322 CGGTAATCTCAAACGGTGTTGA 58.939 45.455 0.00 5.89 36.15 3.18
505 506 3.061322 TCGGTAATCTCAAACGGTGTTG 58.939 45.455 0.00 0.00 0.00 3.33
506 507 3.389925 TCGGTAATCTCAAACGGTGTT 57.610 42.857 0.00 0.00 0.00 3.32
507 508 3.389925 TTCGGTAATCTCAAACGGTGT 57.610 42.857 0.00 0.00 0.00 4.16
508 509 4.735662 TTTTCGGTAATCTCAAACGGTG 57.264 40.909 0.00 0.00 0.00 4.94
509 510 5.239963 ACATTTTTCGGTAATCTCAAACGGT 59.760 36.000 0.00 0.00 0.00 4.83
510 511 5.695818 ACATTTTTCGGTAATCTCAAACGG 58.304 37.500 0.00 0.00 0.00 4.44
511 512 9.632969 CTATACATTTTTCGGTAATCTCAAACG 57.367 33.333 0.00 0.00 0.00 3.60
522 523 9.418045 CAATTGGTTTTCTATACATTTTTCGGT 57.582 29.630 0.00 0.00 0.00 4.69
523 524 9.632807 TCAATTGGTTTTCTATACATTTTTCGG 57.367 29.630 5.42 0.00 0.00 4.30
530 531 9.479549 ACCATTCTCAATTGGTTTTCTATACAT 57.520 29.630 5.42 0.00 0.00 2.29
531 532 8.739039 CACCATTCTCAATTGGTTTTCTATACA 58.261 33.333 5.42 0.00 31.38 2.29
532 533 8.739972 ACACCATTCTCAATTGGTTTTCTATAC 58.260 33.333 5.42 0.00 31.38 1.47
533 534 8.739039 CACACCATTCTCAATTGGTTTTCTATA 58.261 33.333 5.42 0.00 31.38 1.31
534 535 7.451255 TCACACCATTCTCAATTGGTTTTCTAT 59.549 33.333 5.42 0.00 31.38 1.98
535 536 6.775142 TCACACCATTCTCAATTGGTTTTCTA 59.225 34.615 5.42 0.00 31.38 2.10
536 537 5.598005 TCACACCATTCTCAATTGGTTTTCT 59.402 36.000 5.42 0.00 31.38 2.52
537 538 5.841810 TCACACCATTCTCAATTGGTTTTC 58.158 37.500 5.42 0.00 31.38 2.29
538 539 5.221501 CCTCACACCATTCTCAATTGGTTTT 60.222 40.000 5.42 0.00 31.38 2.43
539 540 4.281688 CCTCACACCATTCTCAATTGGTTT 59.718 41.667 5.42 0.00 31.38 3.27
540 541 3.828451 CCTCACACCATTCTCAATTGGTT 59.172 43.478 5.42 0.00 31.38 3.67
541 542 3.074390 TCCTCACACCATTCTCAATTGGT 59.926 43.478 5.42 0.00 34.56 3.67
542 543 3.689347 TCCTCACACCATTCTCAATTGG 58.311 45.455 5.42 0.00 0.00 3.16
543 544 3.693085 CCTCCTCACACCATTCTCAATTG 59.307 47.826 0.00 0.00 0.00 2.32
544 545 3.588842 TCCTCCTCACACCATTCTCAATT 59.411 43.478 0.00 0.00 0.00 2.32
545 546 3.184628 TCCTCCTCACACCATTCTCAAT 58.815 45.455 0.00 0.00 0.00 2.57
546 547 2.619931 TCCTCCTCACACCATTCTCAA 58.380 47.619 0.00 0.00 0.00 3.02
547 548 2.325661 TCCTCCTCACACCATTCTCA 57.674 50.000 0.00 0.00 0.00 3.27
548 549 3.703001 TTTCCTCCTCACACCATTCTC 57.297 47.619 0.00 0.00 0.00 2.87
549 550 4.453480 TTTTTCCTCCTCACACCATTCT 57.547 40.909 0.00 0.00 0.00 2.40
567 568 1.037493 GCCTTGTCCTTCGGGTTTTT 58.963 50.000 0.00 0.00 36.28 1.94
568 569 1.170290 CGCCTTGTCCTTCGGGTTTT 61.170 55.000 0.00 0.00 36.28 2.43
569 570 1.599797 CGCCTTGTCCTTCGGGTTT 60.600 57.895 0.00 0.00 36.28 3.27
570 571 2.032071 CGCCTTGTCCTTCGGGTT 59.968 61.111 0.00 0.00 36.28 4.11
571 572 2.333701 AAACGCCTTGTCCTTCGGGT 62.334 55.000 0.00 0.00 36.28 5.28
572 573 1.599797 AAACGCCTTGTCCTTCGGG 60.600 57.895 0.00 0.00 0.00 5.14
573 574 1.574428 CAAACGCCTTGTCCTTCGG 59.426 57.895 0.00 0.00 0.00 4.30
574 575 0.882927 TCCAAACGCCTTGTCCTTCG 60.883 55.000 0.00 0.00 32.65 3.79
575 576 1.534729 ATCCAAACGCCTTGTCCTTC 58.465 50.000 0.00 0.00 32.65 3.46
576 577 1.995376 AATCCAAACGCCTTGTCCTT 58.005 45.000 0.00 0.00 32.65 3.36
577 578 1.995376 AAATCCAAACGCCTTGTCCT 58.005 45.000 0.00 0.00 32.65 3.85
578 579 2.817844 ACTAAATCCAAACGCCTTGTCC 59.182 45.455 0.00 0.00 32.65 4.02
579 580 4.499037 AACTAAATCCAAACGCCTTGTC 57.501 40.909 0.00 0.00 32.65 3.18
580 581 4.098807 ACAAACTAAATCCAAACGCCTTGT 59.901 37.500 0.00 0.00 32.65 3.16
581 582 4.616953 ACAAACTAAATCCAAACGCCTTG 58.383 39.130 0.00 0.00 34.52 3.61
582 583 4.929819 ACAAACTAAATCCAAACGCCTT 57.070 36.364 0.00 0.00 0.00 4.35
583 584 5.067954 AGTACAAACTAAATCCAAACGCCT 58.932 37.500 0.00 0.00 32.84 5.52
584 585 5.366829 AGTACAAACTAAATCCAAACGCC 57.633 39.130 0.00 0.00 32.84 5.68
585 586 5.854866 GGAAGTACAAACTAAATCCAAACGC 59.145 40.000 0.00 0.00 33.75 4.84
586 587 7.198306 AGGAAGTACAAACTAAATCCAAACG 57.802 36.000 0.00 0.00 34.00 3.60
587 588 7.572539 CGGAGGAAGTACAAACTAAATCCAAAC 60.573 40.741 0.00 0.00 34.00 2.93
588 589 6.428771 CGGAGGAAGTACAAACTAAATCCAAA 59.571 38.462 0.00 0.00 34.00 3.28
589 590 5.935789 CGGAGGAAGTACAAACTAAATCCAA 59.064 40.000 0.00 0.00 34.00 3.53
590 591 5.012354 ACGGAGGAAGTACAAACTAAATCCA 59.988 40.000 0.00 0.00 34.00 3.41
591 592 5.485620 ACGGAGGAAGTACAAACTAAATCC 58.514 41.667 0.00 0.00 33.75 3.01
592 593 8.538409 TTTACGGAGGAAGTACAAACTAAATC 57.462 34.615 0.00 0.00 33.75 2.17
593 594 8.370182 TCTTTACGGAGGAAGTACAAACTAAAT 58.630 33.333 0.00 0.00 33.75 1.40
594 595 7.725251 TCTTTACGGAGGAAGTACAAACTAAA 58.275 34.615 0.00 0.00 33.75 1.85
595 596 7.288810 TCTTTACGGAGGAAGTACAAACTAA 57.711 36.000 0.00 0.00 33.75 2.24
596 597 6.899393 TCTTTACGGAGGAAGTACAAACTA 57.101 37.500 0.00 0.00 33.75 2.24
597 598 5.796424 TCTTTACGGAGGAAGTACAAACT 57.204 39.130 0.00 0.00 37.65 2.66
598 599 6.849588 TTTCTTTACGGAGGAAGTACAAAC 57.150 37.500 0.00 0.00 0.00 2.93
636 637 9.733219 AGCGTTTAGATTACTACTTTAGTGATC 57.267 33.333 9.14 9.14 46.38 2.92
637 638 9.517609 CAGCGTTTAGATTACTACTTTAGTGAT 57.482 33.333 0.00 0.00 39.81 3.06
638 639 8.733458 TCAGCGTTTAGATTACTACTTTAGTGA 58.267 33.333 0.00 0.00 39.81 3.41
639 640 8.906636 TCAGCGTTTAGATTACTACTTTAGTG 57.093 34.615 0.00 0.00 39.81 2.74
640 641 8.954350 TCTCAGCGTTTAGATTACTACTTTAGT 58.046 33.333 0.00 0.00 42.68 2.24
641 642 9.440784 CTCTCAGCGTTTAGATTACTACTTTAG 57.559 37.037 0.00 0.00 0.00 1.85
642 643 7.914346 GCTCTCAGCGTTTAGATTACTACTTTA 59.086 37.037 0.00 0.00 0.00 1.85
643 644 6.752815 GCTCTCAGCGTTTAGATTACTACTTT 59.247 38.462 0.00 0.00 0.00 2.66
644 645 6.267070 GCTCTCAGCGTTTAGATTACTACTT 58.733 40.000 0.00 0.00 0.00 2.24
645 646 5.823353 GCTCTCAGCGTTTAGATTACTACT 58.177 41.667 0.00 0.00 0.00 2.57
660 661 7.209475 ACTCAAGAAATATAAGAGCTCTCAGC 58.791 38.462 18.55 2.83 42.84 4.26
661 662 9.677567 GTACTCAAGAAATATAAGAGCTCTCAG 57.322 37.037 18.55 0.00 0.00 3.35
662 663 9.190317 TGTACTCAAGAAATATAAGAGCTCTCA 57.810 33.333 18.55 1.49 0.00 3.27
732 733 8.614469 TTTCAAACTTCATCCACAAACTTTTT 57.386 26.923 0.00 0.00 0.00 1.94
733 734 7.877612 ACTTTCAAACTTCATCCACAAACTTTT 59.122 29.630 0.00 0.00 0.00 2.27
734 735 7.386059 ACTTTCAAACTTCATCCACAAACTTT 58.614 30.769 0.00 0.00 0.00 2.66
735 736 6.935167 ACTTTCAAACTTCATCCACAAACTT 58.065 32.000 0.00 0.00 0.00 2.66
736 737 6.530019 ACTTTCAAACTTCATCCACAAACT 57.470 33.333 0.00 0.00 0.00 2.66
737 738 7.595311 AAACTTTCAAACTTCATCCACAAAC 57.405 32.000 0.00 0.00 0.00 2.93
738 739 7.360776 GCAAAACTTTCAAACTTCATCCACAAA 60.361 33.333 0.00 0.00 0.00 2.83
739 740 6.091986 GCAAAACTTTCAAACTTCATCCACAA 59.908 34.615 0.00 0.00 0.00 3.33
740 741 5.580297 GCAAAACTTTCAAACTTCATCCACA 59.420 36.000 0.00 0.00 0.00 4.17
741 742 5.580297 TGCAAAACTTTCAAACTTCATCCAC 59.420 36.000 0.00 0.00 0.00 4.02
742 743 5.728471 TGCAAAACTTTCAAACTTCATCCA 58.272 33.333 0.00 0.00 0.00 3.41
743 744 6.042143 TCTGCAAAACTTTCAAACTTCATCC 58.958 36.000 0.00 0.00 0.00 3.51
744 745 7.394099 GTTCTGCAAAACTTTCAAACTTCATC 58.606 34.615 0.00 0.00 0.00 2.92
745 746 6.313658 GGTTCTGCAAAACTTTCAAACTTCAT 59.686 34.615 2.38 0.00 0.00 2.57
746 747 5.637387 GGTTCTGCAAAACTTTCAAACTTCA 59.363 36.000 2.38 0.00 0.00 3.02
747 748 5.869344 AGGTTCTGCAAAACTTTCAAACTTC 59.131 36.000 2.38 0.00 0.00 3.01
748 749 5.639082 CAGGTTCTGCAAAACTTTCAAACTT 59.361 36.000 2.38 0.00 0.00 2.66
749 750 5.047377 TCAGGTTCTGCAAAACTTTCAAACT 60.047 36.000 2.38 0.00 0.00 2.66
750 751 5.167845 TCAGGTTCTGCAAAACTTTCAAAC 58.832 37.500 2.38 0.00 0.00 2.93
751 752 5.398603 TCAGGTTCTGCAAAACTTTCAAA 57.601 34.783 2.38 0.00 0.00 2.69
752 753 5.398603 TTCAGGTTCTGCAAAACTTTCAA 57.601 34.783 2.38 0.00 0.00 2.69
753 754 5.047377 AGTTTCAGGTTCTGCAAAACTTTCA 60.047 36.000 2.38 0.00 36.07 2.69
754 755 5.289434 CAGTTTCAGGTTCTGCAAAACTTTC 59.711 40.000 2.38 0.00 36.82 2.62
755 756 5.047377 TCAGTTTCAGGTTCTGCAAAACTTT 60.047 36.000 2.38 0.00 36.82 2.66
756 757 4.462483 TCAGTTTCAGGTTCTGCAAAACTT 59.538 37.500 2.38 0.00 36.82 2.66
757 758 4.016444 TCAGTTTCAGGTTCTGCAAAACT 58.984 39.130 2.38 3.82 38.31 2.66
758 759 4.370364 TCAGTTTCAGGTTCTGCAAAAC 57.630 40.909 0.00 0.00 32.18 2.43
759 760 4.402155 ACATCAGTTTCAGGTTCTGCAAAA 59.598 37.500 0.00 0.00 0.00 2.44
760 761 3.953612 ACATCAGTTTCAGGTTCTGCAAA 59.046 39.130 0.00 0.00 0.00 3.68
761 762 3.554934 ACATCAGTTTCAGGTTCTGCAA 58.445 40.909 0.00 0.00 0.00 4.08
762 763 3.213206 ACATCAGTTTCAGGTTCTGCA 57.787 42.857 0.00 0.00 0.00 4.41
763 764 3.565482 TGAACATCAGTTTCAGGTTCTGC 59.435 43.478 0.00 0.00 38.30 4.26
764 765 5.059161 TCTGAACATCAGTTTCAGGTTCTG 58.941 41.667 11.22 0.00 44.58 3.02
765 766 5.296151 TCTGAACATCAGTTTCAGGTTCT 57.704 39.130 11.22 0.00 44.58 3.01
766 767 5.702670 TGATCTGAACATCAGTTTCAGGTTC 59.297 40.000 11.22 9.42 44.58 3.62
767 768 5.624159 TGATCTGAACATCAGTTTCAGGTT 58.376 37.500 11.22 1.51 44.58 3.50
768 769 5.012458 TCTGATCTGAACATCAGTTTCAGGT 59.988 40.000 25.11 5.07 46.91 4.00
769 770 5.485620 TCTGATCTGAACATCAGTTTCAGG 58.514 41.667 25.11 15.72 46.91 3.86
770 771 6.164876 ACTCTGATCTGAACATCAGTTTCAG 58.835 40.000 22.59 22.59 46.91 3.02
771 772 6.106648 ACTCTGATCTGAACATCAGTTTCA 57.893 37.500 9.67 10.12 46.91 2.69
772 773 8.539770 TTAACTCTGATCTGAACATCAGTTTC 57.460 34.615 13.82 6.67 46.91 2.78
773 774 8.370940 TCTTAACTCTGATCTGAACATCAGTTT 58.629 33.333 13.82 7.47 46.91 2.66
774 775 7.901029 TCTTAACTCTGATCTGAACATCAGTT 58.099 34.615 13.38 13.38 46.91 3.16
775 776 7.473735 TCTTAACTCTGATCTGAACATCAGT 57.526 36.000 9.67 1.57 46.91 3.41
777 778 8.534496 TGAATCTTAACTCTGATCTGAACATCA 58.466 33.333 3.72 0.00 0.00 3.07
778 779 8.939201 TGAATCTTAACTCTGATCTGAACATC 57.061 34.615 3.72 0.00 0.00 3.06
779 780 8.756927 TCTGAATCTTAACTCTGATCTGAACAT 58.243 33.333 3.72 0.00 0.00 2.71
780 781 8.127150 TCTGAATCTTAACTCTGATCTGAACA 57.873 34.615 3.72 0.00 0.00 3.18
781 782 8.994429 TTCTGAATCTTAACTCTGATCTGAAC 57.006 34.615 3.72 0.00 0.00 3.18
783 784 9.814899 GATTTCTGAATCTTAACTCTGATCTGA 57.185 33.333 2.03 2.03 38.87 3.27
812 813 3.304911 TGGGATCAAACCTTTCACACA 57.695 42.857 0.00 0.00 0.00 3.72
835 841 4.476297 CTTTTTACCCCCAAACCAGTAGT 58.524 43.478 0.00 0.00 0.00 2.73
846 852 2.289882 ACGTGTAGAGCTTTTTACCCCC 60.290 50.000 0.00 0.00 0.00 5.40
865 873 2.792890 CGATCTGTAGCAGTCTTGGACG 60.793 54.545 0.00 0.00 37.67 4.79
867 875 1.135139 GCGATCTGTAGCAGTCTTGGA 59.865 52.381 0.00 0.00 32.61 3.53
893 901 2.754946 TCTTCGCTGGGATTTACGTT 57.245 45.000 0.00 0.00 0.00 3.99
894 902 2.232941 TCTTCTTCGCTGGGATTTACGT 59.767 45.455 0.00 0.00 0.00 3.57
895 903 2.860735 CTCTTCTTCGCTGGGATTTACG 59.139 50.000 0.00 0.00 0.00 3.18
903 911 0.523966 ACTCGACTCTTCTTCGCTGG 59.476 55.000 0.00 0.00 36.40 4.85
908 916 1.729797 GCGTGGACTCGACTCTTCTTC 60.730 57.143 0.00 0.00 0.00 2.87
909 917 0.241481 GCGTGGACTCGACTCTTCTT 59.759 55.000 0.00 0.00 0.00 2.52
912 920 1.286260 GTGCGTGGACTCGACTCTT 59.714 57.895 0.00 0.00 0.00 2.85
913 921 2.627737 GGTGCGTGGACTCGACTCT 61.628 63.158 0.00 0.00 0.00 3.24
922 930 4.720902 CTGCCCATGGTGCGTGGA 62.721 66.667 11.73 0.00 42.73 4.02
924 932 0.747644 TTATCTGCCCATGGTGCGTG 60.748 55.000 11.73 10.55 0.00 5.34
1394 1402 1.535028 ACGCGACAAATCAATGCTTCA 59.465 42.857 15.93 0.00 0.00 3.02
1398 1406 1.723115 CGCACGCGACAAATCAATGC 61.723 55.000 15.93 7.94 42.83 3.56
1599 1611 2.154462 GTGAGGTGAATGGTTGAGTGG 58.846 52.381 0.00 0.00 0.00 4.00
1607 1623 2.489329 GTTGATGTGGTGAGGTGAATGG 59.511 50.000 0.00 0.00 0.00 3.16
1616 1632 2.880268 CTGCAAAGAGTTGATGTGGTGA 59.120 45.455 0.00 0.00 36.83 4.02
1619 1635 3.304928 GGAACTGCAAAGAGTTGATGTGG 60.305 47.826 0.00 0.00 36.27 4.17
1622 1638 3.567164 ACTGGAACTGCAAAGAGTTGATG 59.433 43.478 0.00 0.00 36.27 3.07
1626 1642 1.678101 GCACTGGAACTGCAAAGAGTT 59.322 47.619 0.00 0.00 38.94 3.01
1663 1681 2.942796 TTCATGCCGTCCGCTCAGT 61.943 57.895 0.00 0.00 38.78 3.41
1691 1713 1.144969 CCGTTTCTGCACACGTACAT 58.855 50.000 7.38 0.00 34.47 2.29
1693 1715 1.857364 CCCGTTTCTGCACACGTAC 59.143 57.895 7.38 0.00 34.47 3.67
1694 1716 1.957186 GCCCGTTTCTGCACACGTA 60.957 57.895 7.38 0.00 34.47 3.57
1695 1717 3.276846 GCCCGTTTCTGCACACGT 61.277 61.111 7.38 0.00 34.47 4.49
1696 1718 4.025401 GGCCCGTTTCTGCACACG 62.025 66.667 0.00 2.06 36.12 4.49
2026 2048 2.566724 CCTGCCAAAAATGAGCCCTTAA 59.433 45.455 0.00 0.00 0.00 1.85
2027 2049 2.178580 CCTGCCAAAAATGAGCCCTTA 58.821 47.619 0.00 0.00 0.00 2.69
2029 2051 0.178924 ACCTGCCAAAAATGAGCCCT 60.179 50.000 0.00 0.00 0.00 5.19
2069 2094 6.403527 CGTGGCTACATCAAAATTCATTCTCA 60.404 38.462 0.00 0.00 0.00 3.27
2097 2122 1.153549 CAGCTGGTTCCTCCTACGC 60.154 63.158 5.57 0.00 37.07 4.42
2125 2150 3.945179 GCTTGCAGCAGTATGAATGTAC 58.055 45.455 0.00 0.00 41.89 2.90
2174 2199 3.072944 CTGCAATAAGGGAGATAGCAGC 58.927 50.000 0.00 0.00 41.03 5.25
2194 2226 0.461870 TGTCACACTGCAAGAACGCT 60.462 50.000 0.00 0.00 37.43 5.07
2196 2228 1.866601 TCATGTCACACTGCAAGAACG 59.133 47.619 0.00 0.00 37.43 3.95
2220 2252 2.676839 CAAGCTTCTGATGTGCTAGTGG 59.323 50.000 0.00 0.00 35.85 4.00
2253 2292 0.107945 AGGAGCACGAGCCAAATCTC 60.108 55.000 0.00 0.00 43.56 2.75
2261 2300 1.512926 TCTTTTCAAGGAGCACGAGC 58.487 50.000 0.00 0.00 42.56 5.03
2316 2355 9.669887 AAATTACAAATGCCATCATTAACATGT 57.330 25.926 0.00 0.00 41.77 3.21
2368 2806 6.393171 AGCAATGATTTTCTACCTTTTCTGC 58.607 36.000 0.00 0.00 0.00 4.26
2425 3856 8.549548 CAAGCACAACATCATGTAAAAATTCAA 58.450 29.630 0.00 0.00 30.84 2.69
2580 4014 1.207329 CTTAGTTCCGGGGAGTTCAGG 59.793 57.143 0.00 0.00 0.00 3.86
2592 4026 4.906618 TCCTCACAAATGGACTTAGTTCC 58.093 43.478 0.00 0.00 36.03 3.62
2598 4032 2.716424 TCCCTTCCTCACAAATGGACTT 59.284 45.455 0.00 0.00 31.24 3.01
2606 4040 2.044793 ACTCCATCCCTTCCTCACAA 57.955 50.000 0.00 0.00 0.00 3.33
2618 4052 9.562175 CTGATGGACAGTCTGGATAACTCCATC 62.562 48.148 26.45 26.45 44.41 3.51
2648 4082 1.457831 AGGATCGGCTACCTGGACC 60.458 63.158 0.00 0.00 34.99 4.46
2655 4091 1.335132 TTGGGGTGAGGATCGGCTAC 61.335 60.000 0.00 0.00 38.61 3.58
2656 4092 0.619255 TTTGGGGTGAGGATCGGCTA 60.619 55.000 0.00 0.00 38.61 3.93
2659 4095 1.452108 GCTTTGGGGTGAGGATCGG 60.452 63.158 0.00 0.00 38.61 4.18
2673 4109 0.912006 GAGAGGAGAGGTGGGGCTTT 60.912 60.000 0.00 0.00 0.00 3.51
2676 4112 1.306568 AAGAGAGGAGAGGTGGGGC 60.307 63.158 0.00 0.00 0.00 5.80
2677 4113 0.689412 GGAAGAGAGGAGAGGTGGGG 60.689 65.000 0.00 0.00 0.00 4.96
2709 4158 2.087248 CTGGGGGTGGGAATCAAGT 58.913 57.895 0.00 0.00 0.00 3.16
2727 4176 1.073897 AGGCAGTGAAGAACAGGGC 59.926 57.895 0.00 0.00 0.00 5.19
2729 4178 0.250640 AGCAGGCAGTGAAGAACAGG 60.251 55.000 0.00 0.00 0.00 4.00
2742 4191 5.877564 GGGAATGACTATAATAGAAGCAGGC 59.122 44.000 0.00 0.00 0.00 4.85
2748 4197 7.936847 ACGCAAATGGGAATGACTATAATAGAA 59.063 33.333 4.34 0.00 0.00 2.10
2752 4201 6.321181 ACAACGCAAATGGGAATGACTATAAT 59.679 34.615 4.34 0.00 0.00 1.28
2755 4204 4.016444 ACAACGCAAATGGGAATGACTAT 58.984 39.130 4.34 0.00 0.00 2.12
2761 4210 2.030007 CAGTGACAACGCAAATGGGAAT 60.030 45.455 4.34 0.00 0.00 3.01
2785 4234 3.806591 CGGAGGAGCTACGTCAAAA 57.193 52.632 0.00 0.00 32.47 2.44
2815 4265 2.061773 CTATTGGCGTTCATAGCTCCG 58.938 52.381 0.00 0.00 34.52 4.63
2827 4277 3.063997 AGCATTTTCTCGAACTATTGGCG 59.936 43.478 0.00 0.00 0.00 5.69
2907 4357 3.130280 TGCATCATAATGAGCCATCGT 57.870 42.857 0.00 0.00 34.61 3.73
2940 4390 7.201929 CCATTGTTGATCATACCCATCATGAAA 60.202 37.037 0.00 0.00 36.08 2.69
2970 4425 0.950836 CGTCAAATGTTGGAGGCACA 59.049 50.000 0.00 0.00 0.00 4.57
2989 4444 6.382869 ACATTAGCTAATCTGATTGCCAAC 57.617 37.500 16.21 0.00 0.00 3.77
2999 4454 9.326489 TCCCTAACATCATACATTAGCTAATCT 57.674 33.333 16.21 7.73 0.00 2.40
3008 4463 7.147320 TGAGATGGTTCCCTAACATCATACATT 60.147 37.037 5.68 0.00 37.34 2.71
3021 4476 3.611025 TTTGGTTTGAGATGGTTCCCT 57.389 42.857 0.00 0.00 0.00 4.20
3101 4585 1.399089 CCGTTTTTGTCTGTTCCACGT 59.601 47.619 0.00 0.00 0.00 4.49
3136 4620 1.569479 GAAGTGGCCGTGAACTCTGC 61.569 60.000 0.00 0.00 0.00 4.26
3137 4621 0.249868 TGAAGTGGCCGTGAACTCTG 60.250 55.000 0.00 0.00 0.00 3.35
3146 4630 1.879380 TCAAACTCATTGAAGTGGCCG 59.121 47.619 0.00 0.00 44.94 6.13
3167 4651 4.545610 CAATTTGATGCGGTGTGTAGTTT 58.454 39.130 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.