Multiple sequence alignment - TraesCS1D01G349200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G349200 chr1D 100.000 3419 0 0 1 3419 435536734 435533316 0.000000e+00 6314.0
1 TraesCS1D01G349200 chr1D 89.394 660 40 19 2777 3419 467300924 467301570 0.000000e+00 804.0
2 TraesCS1D01G349200 chr1D 88.771 659 56 9 2777 3419 223441657 223442313 0.000000e+00 791.0
3 TraesCS1D01G349200 chr1D 93.056 144 4 2 2639 2776 26151100 26150957 4.470000e-49 206.0
4 TraesCS1D01G349200 chr1D 81.022 137 15 7 87 212 28169598 28169734 7.810000e-17 99.0
5 TraesCS1D01G349200 chr1D 80.769 130 22 3 16 144 411318540 411318667 7.810000e-17 99.0
6 TraesCS1D01G349200 chr1B 90.890 1877 100 44 743 2570 588823107 588821253 0.000000e+00 2453.0
7 TraesCS1D01G349200 chr1B 90.038 261 19 4 374 633 588823424 588823170 7.070000e-87 331.0
8 TraesCS1D01G349200 chr1A 89.819 1493 56 29 1078 2527 532968551 532967112 0.000000e+00 1827.0
9 TraesCS1D01G349200 chr1A 93.607 219 5 6 810 1027 532969178 532968968 5.510000e-83 318.0
10 TraesCS1D01G349200 chr1A 88.930 271 11 10 375 638 532970008 532969750 1.980000e-82 316.0
11 TraesCS1D01G349200 chr1A 87.324 142 12 3 2634 2770 582746818 582746678 1.270000e-34 158.0
12 TraesCS1D01G349200 chr2D 95.448 659 13 7 2777 3419 406267059 406267716 0.000000e+00 1035.0
13 TraesCS1D01G349200 chr2D 92.587 661 26 9 2777 3419 110244202 110244857 0.000000e+00 928.0
14 TraesCS1D01G349200 chr2D 91.045 670 34 12 2776 3419 432063611 432064280 0.000000e+00 881.0
15 TraesCS1D01G349200 chr2D 81.633 147 14 11 175 313 447837540 447837681 3.610000e-20 110.0
16 TraesCS1D01G349200 chr4D 93.939 660 22 5 2777 3419 30212130 30211472 0.000000e+00 981.0
17 TraesCS1D01G349200 chr4D 92.063 378 22 4 1 376 501330532 501330161 3.020000e-145 525.0
18 TraesCS1D01G349200 chr4D 84.874 119 16 1 20 138 389408955 389409071 5.990000e-23 119.0
19 TraesCS1D01G349200 chr5D 93.363 663 24 7 2777 3419 436806398 436807060 0.000000e+00 963.0
20 TraesCS1D01G349200 chr5D 93.531 371 23 1 1 371 509940664 509941033 4.990000e-153 551.0
21 TraesCS1D01G349200 chr5D 77.662 385 69 13 3 374 416588366 416588746 5.740000e-53 219.0
22 TraesCS1D01G349200 chr5D 76.115 381 57 15 1 375 302346984 302346632 5.870000e-38 169.0
23 TraesCS1D01G349200 chr5D 86.525 141 13 2 2636 2770 21214632 21214772 2.130000e-32 150.0
24 TraesCS1D01G349200 chr6D 92.548 671 18 14 2777 3419 162228738 162228072 0.000000e+00 933.0
25 TraesCS1D01G349200 chr6D 90.758 660 40 8 2781 3419 110660016 110660675 0.000000e+00 861.0
26 TraesCS1D01G349200 chr6D 87.481 655 64 9 2777 3419 256722310 256721662 0.000000e+00 739.0
27 TraesCS1D01G349200 chr6D 92.625 461 13 8 2980 3419 37315294 37314834 0.000000e+00 643.0
28 TraesCS1D01G349200 chr6D 95.157 351 8 2 3078 3419 178845269 178844919 2.320000e-151 545.0
29 TraesCS1D01G349200 chr6D 87.766 376 36 4 1 375 357843862 357844228 6.780000e-117 431.0
30 TraesCS1D01G349200 chr6D 77.465 355 55 17 1 337 49462138 49461791 4.500000e-44 189.0
31 TraesCS1D01G349200 chr6D 75.105 237 49 8 92 323 106699720 106699489 6.040000e-18 102.0
32 TraesCS1D01G349200 chr6D 82.353 119 18 2 20 137 115633511 115633395 2.170000e-17 100.0
33 TraesCS1D01G349200 chr6D 83.505 97 15 1 49 144 11915226 11915322 4.700000e-14 89.8
34 TraesCS1D01G349200 chr6D 86.301 73 7 3 2634 2704 464990990 464991061 3.660000e-10 76.8
35 TraesCS1D01G349200 chr6D 95.000 40 2 0 100 139 469813412 469813373 2.850000e-06 63.9
36 TraesCS1D01G349200 chr6B 87.386 658 65 10 2777 3419 170871413 170872067 0.000000e+00 739.0
37 TraesCS1D01G349200 chr6B 88.624 378 32 7 1 377 677778607 677778240 1.870000e-122 449.0
38 TraesCS1D01G349200 chr6B 87.306 386 30 7 1 377 677910882 677910507 1.130000e-114 424.0
39 TraesCS1D01G349200 chr6B 79.495 317 47 15 6 313 715583799 715584106 3.460000e-50 209.0
40 TraesCS1D01G349200 chrUn 96.581 351 3 2 3078 3419 255032046 255032396 1.060000e-159 573.0
41 TraesCS1D01G349200 chrUn 94.788 307 3 3 3122 3419 381775847 381775545 1.860000e-127 466.0
42 TraesCS1D01G349200 chrUn 95.283 212 1 2 3217 3419 396879398 396879187 9.150000e-86 327.0
43 TraesCS1D01G349200 chrUn 76.705 176 37 4 164 337 132217353 132217180 1.010000e-15 95.3
44 TraesCS1D01G349200 chrUn 80.992 121 20 3 18 138 51477401 51477518 3.630000e-15 93.5
45 TraesCS1D01G349200 chrUn 80.992 121 20 3 18 138 322554821 322554938 3.630000e-15 93.5
46 TraesCS1D01G349200 chr7D 91.351 370 28 4 6 374 46955793 46955427 1.420000e-138 503.0
47 TraesCS1D01G349200 chr7D 86.162 383 17 10 1 374 507803062 507802707 6.920000e-102 381.0
48 TraesCS1D01G349200 chr7D 86.006 343 37 8 42 377 25853478 25853140 1.170000e-94 357.0
49 TraesCS1D01G349200 chr7D 85.666 293 38 4 44 334 547464607 547464317 4.290000e-79 305.0
50 TraesCS1D01G349200 chr7D 78.797 316 48 15 6 312 233289226 233289531 9.680000e-46 195.0
51 TraesCS1D01G349200 chr6A 81.818 649 58 16 2776 3419 571927940 571927347 1.100000e-134 490.0
52 TraesCS1D01G349200 chr6A 89.583 144 7 4 2639 2776 34566985 34567126 3.510000e-40 176.0
53 TraesCS1D01G349200 chr5A 88.533 375 32 8 1 375 637587699 637588062 8.710000e-121 444.0
54 TraesCS1D01G349200 chr5A 90.714 140 7 3 2636 2770 666682056 666681918 7.540000e-42 182.0
55 TraesCS1D01G349200 chr2A 88.410 371 38 5 6 374 28248046 28248413 3.130000e-120 442.0
56 TraesCS1D01G349200 chr3B 78.723 376 67 12 1 372 9882412 9882046 4.410000e-59 239.0
57 TraesCS1D01G349200 chr7B 79.592 294 48 9 92 374 715770306 715770598 2.080000e-47 200.0
58 TraesCS1D01G349200 chr3D 76.966 356 66 12 31 374 549095527 549095878 4.500000e-44 189.0
59 TraesCS1D01G349200 chr3D 85.185 81 10 2 178 256 468767110 468767190 7.860000e-12 82.4
60 TraesCS1D01G349200 chr4A 90.000 140 8 3 2636 2770 17394145 17394283 3.510000e-40 176.0
61 TraesCS1D01G349200 chr3A 87.500 144 12 3 2632 2770 677838202 677838344 9.820000e-36 161.0
62 TraesCS1D01G349200 chr4B 84.034 119 14 5 20 137 559158560 559158446 3.610000e-20 110.0
63 TraesCS1D01G349200 chr4B 89.062 64 7 0 2635 2698 476373976 476373913 2.830000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G349200 chr1D 435533316 435536734 3418 True 6314.000000 6314 100.000000 1 3419 1 chr1D.!!$R2 3418
1 TraesCS1D01G349200 chr1D 467300924 467301570 646 False 804.000000 804 89.394000 2777 3419 1 chr1D.!!$F4 642
2 TraesCS1D01G349200 chr1D 223441657 223442313 656 False 791.000000 791 88.771000 2777 3419 1 chr1D.!!$F2 642
3 TraesCS1D01G349200 chr1B 588821253 588823424 2171 True 1392.000000 2453 90.464000 374 2570 2 chr1B.!!$R1 2196
4 TraesCS1D01G349200 chr1A 532967112 532970008 2896 True 820.333333 1827 90.785333 375 2527 3 chr1A.!!$R2 2152
5 TraesCS1D01G349200 chr2D 406267059 406267716 657 False 1035.000000 1035 95.448000 2777 3419 1 chr2D.!!$F2 642
6 TraesCS1D01G349200 chr2D 110244202 110244857 655 False 928.000000 928 92.587000 2777 3419 1 chr2D.!!$F1 642
7 TraesCS1D01G349200 chr2D 432063611 432064280 669 False 881.000000 881 91.045000 2776 3419 1 chr2D.!!$F3 643
8 TraesCS1D01G349200 chr4D 30211472 30212130 658 True 981.000000 981 93.939000 2777 3419 1 chr4D.!!$R1 642
9 TraesCS1D01G349200 chr5D 436806398 436807060 662 False 963.000000 963 93.363000 2777 3419 1 chr5D.!!$F3 642
10 TraesCS1D01G349200 chr6D 162228072 162228738 666 True 933.000000 933 92.548000 2777 3419 1 chr6D.!!$R5 642
11 TraesCS1D01G349200 chr6D 110660016 110660675 659 False 861.000000 861 90.758000 2781 3419 1 chr6D.!!$F2 638
12 TraesCS1D01G349200 chr6D 256721662 256722310 648 True 739.000000 739 87.481000 2777 3419 1 chr6D.!!$R7 642
13 TraesCS1D01G349200 chr6B 170871413 170872067 654 False 739.000000 739 87.386000 2777 3419 1 chr6B.!!$F1 642
14 TraesCS1D01G349200 chr6A 571927347 571927940 593 True 490.000000 490 81.818000 2776 3419 1 chr6A.!!$R1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
649 659 0.038892 ACGTACGGACCATGTGACAC 60.039 55.0 21.06 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 3534 0.109086 CGCCTATCACTGCCCTATCG 60.109 60.0 0.0 0.0 0.0 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.993736 TGTTCACATCACCTGAATGTACG 59.006 43.478 0.00 0.00 30.46 3.67
78 79 3.245518 TCACATCACCTGAATGTACGG 57.754 47.619 0.00 0.00 0.00 4.02
79 80 1.665679 CACATCACCTGAATGTACGGC 59.334 52.381 0.00 0.00 0.00 5.68
80 81 1.299541 CATCACCTGAATGTACGGCC 58.700 55.000 0.00 0.00 0.00 6.13
81 82 0.180406 ATCACCTGAATGTACGGCCC 59.820 55.000 0.00 0.00 0.00 5.80
82 83 1.195442 TCACCTGAATGTACGGCCCA 61.195 55.000 0.00 0.00 0.00 5.36
83 84 0.107214 CACCTGAATGTACGGCCCAT 60.107 55.000 0.00 0.00 0.00 4.00
84 85 1.140052 CACCTGAATGTACGGCCCATA 59.860 52.381 0.00 0.00 0.00 2.74
85 86 1.841277 ACCTGAATGTACGGCCCATAA 59.159 47.619 0.00 0.00 0.00 1.90
86 87 2.240160 ACCTGAATGTACGGCCCATAAA 59.760 45.455 0.00 0.00 0.00 1.40
87 88 3.283751 CCTGAATGTACGGCCCATAAAA 58.716 45.455 0.00 0.00 0.00 1.52
88 89 3.888930 CCTGAATGTACGGCCCATAAAAT 59.111 43.478 0.00 0.00 0.00 1.82
89 90 4.340950 CCTGAATGTACGGCCCATAAAATT 59.659 41.667 0.00 0.00 0.00 1.82
90 91 5.163457 CCTGAATGTACGGCCCATAAAATTT 60.163 40.000 0.00 0.00 0.00 1.82
91 92 6.287589 TGAATGTACGGCCCATAAAATTTT 57.712 33.333 8.75 8.75 0.00 1.82
92 93 6.334202 TGAATGTACGGCCCATAAAATTTTC 58.666 36.000 6.72 0.00 0.00 2.29
93 94 5.923733 ATGTACGGCCCATAAAATTTTCA 57.076 34.783 6.72 0.00 0.00 2.69
94 95 5.317733 TGTACGGCCCATAAAATTTTCAG 57.682 39.130 6.72 1.22 0.00 3.02
95 96 3.885724 ACGGCCCATAAAATTTTCAGG 57.114 42.857 6.72 10.26 0.00 3.86
96 97 3.169908 ACGGCCCATAAAATTTTCAGGT 58.830 40.909 6.72 0.00 0.00 4.00
97 98 3.194755 ACGGCCCATAAAATTTTCAGGTC 59.805 43.478 6.72 7.43 0.00 3.85
98 99 3.430236 CGGCCCATAAAATTTTCAGGTCC 60.430 47.826 6.72 8.88 0.00 4.46
99 100 3.517500 GGCCCATAAAATTTTCAGGTCCA 59.482 43.478 6.72 0.00 0.00 4.02
100 101 4.019771 GGCCCATAAAATTTTCAGGTCCAA 60.020 41.667 6.72 0.00 0.00 3.53
101 102 5.513962 GGCCCATAAAATTTTCAGGTCCAAA 60.514 40.000 6.72 0.00 0.00 3.28
102 103 6.179756 GCCCATAAAATTTTCAGGTCCAAAT 58.820 36.000 6.72 0.00 0.00 2.32
103 104 6.658816 GCCCATAAAATTTTCAGGTCCAAATT 59.341 34.615 6.72 0.00 34.68 1.82
104 105 7.148255 GCCCATAAAATTTTCAGGTCCAAATTC 60.148 37.037 6.72 0.00 32.54 2.17
105 106 8.102676 CCCATAAAATTTTCAGGTCCAAATTCT 58.897 33.333 6.72 0.00 32.54 2.40
114 115 8.698973 TTTCAGGTCCAAATTCTAAATACACA 57.301 30.769 0.00 0.00 0.00 3.72
115 116 8.877864 TTCAGGTCCAAATTCTAAATACACAT 57.122 30.769 0.00 0.00 0.00 3.21
116 117 8.877864 TCAGGTCCAAATTCTAAATACACATT 57.122 30.769 0.00 0.00 0.00 2.71
117 118 8.739039 TCAGGTCCAAATTCTAAATACACATTG 58.261 33.333 0.00 0.00 0.00 2.82
118 119 8.739039 CAGGTCCAAATTCTAAATACACATTGA 58.261 33.333 0.00 0.00 0.00 2.57
119 120 8.960591 AGGTCCAAATTCTAAATACACATTGAG 58.039 33.333 0.00 0.00 0.00 3.02
120 121 8.956426 GGTCCAAATTCTAAATACACATTGAGA 58.044 33.333 0.00 0.00 30.77 3.27
151 152 8.641498 AAAAGACAAATCTGGATGTGAATAGT 57.359 30.769 7.66 0.00 34.48 2.12
152 153 7.621428 AAGACAAATCTGGATGTGAATAGTG 57.379 36.000 7.66 0.00 34.48 2.74
153 154 6.950842 AGACAAATCTGGATGTGAATAGTGA 58.049 36.000 7.66 0.00 32.29 3.41
154 155 7.571919 AGACAAATCTGGATGTGAATAGTGAT 58.428 34.615 7.66 0.00 32.29 3.06
155 156 7.498239 AGACAAATCTGGATGTGAATAGTGATG 59.502 37.037 7.66 0.00 32.29 3.07
156 157 7.114754 ACAAATCTGGATGTGAATAGTGATGT 58.885 34.615 7.66 0.00 30.60 3.06
157 158 7.613022 ACAAATCTGGATGTGAATAGTGATGTT 59.387 33.333 7.66 0.00 30.60 2.71
158 159 8.464404 CAAATCTGGATGTGAATAGTGATGTTT 58.536 33.333 0.00 0.00 0.00 2.83
159 160 8.585471 AATCTGGATGTGAATAGTGATGTTTT 57.415 30.769 0.00 0.00 0.00 2.43
160 161 7.381766 TCTGGATGTGAATAGTGATGTTTTG 57.618 36.000 0.00 0.00 0.00 2.44
161 162 7.167535 TCTGGATGTGAATAGTGATGTTTTGA 58.832 34.615 0.00 0.00 0.00 2.69
162 163 7.119699 TCTGGATGTGAATAGTGATGTTTTGAC 59.880 37.037 0.00 0.00 0.00 3.18
163 164 6.942005 TGGATGTGAATAGTGATGTTTTGACT 59.058 34.615 0.00 0.00 0.00 3.41
164 165 7.448161 TGGATGTGAATAGTGATGTTTTGACTT 59.552 33.333 0.00 0.00 0.00 3.01
165 166 8.299570 GGATGTGAATAGTGATGTTTTGACTTT 58.700 33.333 0.00 0.00 0.00 2.66
166 167 9.683069 GATGTGAATAGTGATGTTTTGACTTTT 57.317 29.630 0.00 0.00 0.00 2.27
167 168 8.854979 TGTGAATAGTGATGTTTTGACTTTTG 57.145 30.769 0.00 0.00 0.00 2.44
168 169 8.465999 TGTGAATAGTGATGTTTTGACTTTTGT 58.534 29.630 0.00 0.00 0.00 2.83
197 198 8.815141 TTTTGACACTATTCATGTTGGATTTG 57.185 30.769 0.00 0.00 0.00 2.32
198 199 7.523293 TTGACACTATTCATGTTGGATTTGT 57.477 32.000 0.00 0.00 0.00 2.83
199 200 7.144722 TGACACTATTCATGTTGGATTTGTC 57.855 36.000 0.00 0.00 0.00 3.18
200 201 6.942005 TGACACTATTCATGTTGGATTTGTCT 59.058 34.615 0.00 0.00 32.63 3.41
201 202 7.448161 TGACACTATTCATGTTGGATTTGTCTT 59.552 33.333 0.00 0.00 32.63 3.01
202 203 8.181904 ACACTATTCATGTTGGATTTGTCTTT 57.818 30.769 0.00 0.00 0.00 2.52
203 204 8.641541 ACACTATTCATGTTGGATTTGTCTTTT 58.358 29.630 0.00 0.00 0.00 2.27
204 205 9.480053 CACTATTCATGTTGGATTTGTCTTTTT 57.520 29.630 0.00 0.00 0.00 1.94
248 249 9.638239 TTCGAATTTGGATCTGAAATTTTTAGG 57.362 29.630 13.70 5.83 34.00 2.69
249 250 8.250332 TCGAATTTGGATCTGAAATTTTTAGGG 58.750 33.333 13.70 4.72 34.00 3.53
250 251 8.250332 CGAATTTGGATCTGAAATTTTTAGGGA 58.750 33.333 13.70 0.00 34.00 4.20
253 254 9.895138 ATTTGGATCTGAAATTTTTAGGGATTG 57.105 29.630 0.00 0.00 0.00 2.67
254 255 8.434589 TTGGATCTGAAATTTTTAGGGATTGT 57.565 30.769 0.00 0.00 0.00 2.71
255 256 9.540538 TTGGATCTGAAATTTTTAGGGATTGTA 57.459 29.630 0.00 0.00 0.00 2.41
256 257 8.966868 TGGATCTGAAATTTTTAGGGATTGTAC 58.033 33.333 0.00 0.00 0.00 2.90
257 258 8.966868 GGATCTGAAATTTTTAGGGATTGTACA 58.033 33.333 0.00 0.00 0.00 2.90
260 261 8.966868 TCTGAAATTTTTAGGGATTGTACATCC 58.033 33.333 13.11 13.11 37.47 3.51
261 262 8.657387 TGAAATTTTTAGGGATTGTACATCCA 57.343 30.769 19.53 0.00 39.93 3.41
262 263 9.265862 TGAAATTTTTAGGGATTGTACATCCAT 57.734 29.630 19.53 16.58 39.93 3.41
263 264 9.533253 GAAATTTTTAGGGATTGTACATCCATG 57.467 33.333 19.53 0.00 39.93 3.66
264 265 8.608185 AATTTTTAGGGATTGTACATCCATGT 57.392 30.769 19.53 0.00 44.48 3.21
265 266 7.403312 TTTTTAGGGATTGTACATCCATGTG 57.597 36.000 19.53 0.00 41.89 3.21
266 267 5.966853 TTAGGGATTGTACATCCATGTGA 57.033 39.130 19.53 6.89 41.89 3.58
267 268 4.156455 AGGGATTGTACATCCATGTGAC 57.844 45.455 19.53 7.05 41.89 3.67
268 269 2.872245 GGGATTGTACATCCATGTGACG 59.128 50.000 19.53 0.00 41.89 4.35
269 270 3.531538 GGATTGTACATCCATGTGACGT 58.468 45.455 15.41 0.00 41.89 4.34
270 271 3.309682 GGATTGTACATCCATGTGACGTG 59.690 47.826 15.41 0.00 41.89 4.49
271 272 3.669251 TTGTACATCCATGTGACGTGA 57.331 42.857 6.33 0.00 41.89 4.35
272 273 3.669251 TGTACATCCATGTGACGTGAA 57.331 42.857 6.33 0.00 41.89 3.18
273 274 3.322369 TGTACATCCATGTGACGTGAAC 58.678 45.455 6.33 0.00 41.89 3.18
274 275 2.542020 ACATCCATGTGACGTGAACA 57.458 45.000 6.33 0.00 40.03 3.18
275 276 3.057969 ACATCCATGTGACGTGAACAT 57.942 42.857 6.33 7.49 40.03 2.71
276 277 3.002791 ACATCCATGTGACGTGAACATC 58.997 45.455 6.33 0.00 40.03 3.06
277 278 2.093306 TCCATGTGACGTGAACATCC 57.907 50.000 6.33 0.00 36.10 3.51
278 279 1.346068 TCCATGTGACGTGAACATCCA 59.654 47.619 6.33 0.00 36.10 3.41
279 280 1.464608 CCATGTGACGTGAACATCCAC 59.535 52.381 6.33 2.87 36.10 4.02
280 281 2.142319 CATGTGACGTGAACATCCACA 58.858 47.619 9.88 8.21 41.24 4.17
281 282 2.317530 TGTGACGTGAACATCCACAA 57.682 45.000 0.00 0.00 36.89 3.33
282 283 2.844946 TGTGACGTGAACATCCACAAT 58.155 42.857 0.00 0.00 36.89 2.71
283 284 3.210227 TGTGACGTGAACATCCACAATT 58.790 40.909 0.00 0.00 36.89 2.32
284 285 3.629855 TGTGACGTGAACATCCACAATTT 59.370 39.130 0.00 0.00 36.89 1.82
285 286 4.097135 TGTGACGTGAACATCCACAATTTT 59.903 37.500 0.00 0.00 36.89 1.82
286 287 5.040635 GTGACGTGAACATCCACAATTTTT 58.959 37.500 0.00 0.00 36.89 1.94
345 346 9.645128 TTTTGAAATGGTATCATGATATCACCT 57.355 29.630 27.08 18.11 37.24 4.00
348 349 9.948964 TGAAATGGTATCATGATATCACCTAAG 57.051 33.333 27.08 0.00 37.24 2.18
351 352 7.724490 TGGTATCATGATATCACCTAAGAGG 57.276 40.000 22.23 0.00 42.49 3.69
352 353 7.903481 ATGGTATCATGATATCACCTAAGAGGT 59.097 37.037 27.08 8.63 39.87 3.85
365 366 5.815233 CCTAAGAGGTGGTATCATGTGAT 57.185 43.478 0.68 0.68 38.51 3.06
366 367 6.918067 CCTAAGAGGTGGTATCATGTGATA 57.082 41.667 0.00 0.00 36.05 2.15
367 368 7.487822 CCTAAGAGGTGGTATCATGTGATAT 57.512 40.000 6.04 0.00 39.03 1.63
368 369 7.911651 CCTAAGAGGTGGTATCATGTGATATT 58.088 38.462 6.04 0.00 39.03 1.28
369 370 8.378565 CCTAAGAGGTGGTATCATGTGATATTT 58.621 37.037 6.04 0.00 39.03 1.40
370 371 9.784531 CTAAGAGGTGGTATCATGTGATATTTT 57.215 33.333 6.04 0.00 39.03 1.82
371 372 8.682936 AAGAGGTGGTATCATGTGATATTTTC 57.317 34.615 6.04 2.09 39.03 2.29
372 373 7.227156 AGAGGTGGTATCATGTGATATTTTCC 58.773 38.462 6.04 3.87 39.03 3.13
439 440 1.595093 AATTTCCAAAGGCGCGAGGG 61.595 55.000 12.10 2.52 0.00 4.30
472 473 1.734477 CTGTGAGCACGGGAAGACG 60.734 63.158 0.00 0.00 40.31 4.18
492 499 1.596752 ACATCGCCTGCGTGTGAAA 60.597 52.632 20.15 0.00 40.74 2.69
493 500 1.163420 ACATCGCCTGCGTGTGAAAA 61.163 50.000 20.15 0.00 40.74 2.29
494 501 0.725784 CATCGCCTGCGTGTGAAAAC 60.726 55.000 11.68 0.00 40.74 2.43
495 502 1.852067 ATCGCCTGCGTGTGAAAACC 61.852 55.000 11.68 0.00 40.74 3.27
605 615 0.040958 CACCGCTCAGAAACACAAGC 60.041 55.000 0.00 0.00 0.00 4.01
620 630 0.518636 CAAGCACCTTCATCACACGG 59.481 55.000 0.00 0.00 0.00 4.94
621 631 0.108585 AAGCACCTTCATCACACGGT 59.891 50.000 0.00 0.00 0.00 4.83
623 633 1.076332 GCACCTTCATCACACGGTAC 58.924 55.000 0.00 0.00 0.00 3.34
624 634 1.606994 GCACCTTCATCACACGGTACA 60.607 52.381 0.00 0.00 0.00 2.90
640 650 2.785679 GTACATGTGTACGTACGGACC 58.214 52.381 27.15 18.29 41.06 4.46
641 651 1.246649 ACATGTGTACGTACGGACCA 58.753 50.000 27.15 22.90 0.00 4.02
642 652 1.820519 ACATGTGTACGTACGGACCAT 59.179 47.619 27.15 23.95 0.00 3.55
643 653 2.190161 CATGTGTACGTACGGACCATG 58.810 52.381 30.39 30.39 34.14 3.66
644 654 1.246649 TGTGTACGTACGGACCATGT 58.753 50.000 27.15 2.67 0.00 3.21
645 655 1.068402 TGTGTACGTACGGACCATGTG 60.068 52.381 27.15 0.00 0.00 3.21
646 656 1.199789 GTGTACGTACGGACCATGTGA 59.800 52.381 27.15 5.00 0.00 3.58
647 657 1.199789 TGTACGTACGGACCATGTGAC 59.800 52.381 27.15 0.52 0.00 3.67
648 658 1.199789 GTACGTACGGACCATGTGACA 59.800 52.381 20.28 0.00 0.00 3.58
649 659 0.038892 ACGTACGGACCATGTGACAC 60.039 55.000 21.06 0.00 0.00 3.67
650 660 0.038983 CGTACGGACCATGTGACACA 60.039 55.000 11.41 11.41 0.00 3.72
651 661 1.403647 CGTACGGACCATGTGACACAT 60.404 52.381 15.48 15.48 39.91 3.21
652 662 2.159352 CGTACGGACCATGTGACACATA 60.159 50.000 20.42 0.77 36.53 2.29
653 663 3.490249 CGTACGGACCATGTGACACATAT 60.490 47.826 20.42 11.96 36.53 1.78
654 664 2.905075 ACGGACCATGTGACACATATG 58.095 47.619 20.42 16.22 36.53 1.78
661 671 5.947228 CCATGTGACACATATGGTAATCC 57.053 43.478 20.42 0.00 44.49 3.01
662 672 5.375773 CCATGTGACACATATGGTAATCCA 58.624 41.667 20.42 0.00 44.49 3.41
663 673 5.827267 CCATGTGACACATATGGTAATCCAA 59.173 40.000 20.42 0.00 44.49 3.53
664 674 6.320926 CCATGTGACACATATGGTAATCCAAA 59.679 38.462 20.42 0.00 44.49 3.28
665 675 7.195646 CATGTGACACATATGGTAATCCAAAC 58.804 38.462 20.42 0.00 41.20 2.93
666 676 7.067372 CATGTGACACATATGGTAATCCAAACT 59.933 37.037 20.42 0.00 41.20 2.66
667 677 8.271458 ATGTGACACATATGGTAATCCAAACTA 58.729 33.333 19.53 0.00 38.14 2.24
706 716 2.290367 ACGTACGGTAAACTTTTTGCCC 59.710 45.455 21.06 0.00 0.00 5.36
707 717 2.290093 CGTACGGTAAACTTTTTGCCCA 59.710 45.455 7.57 0.00 0.00 5.36
710 750 1.067821 CGGTAAACTTTTTGCCCAGCA 59.932 47.619 0.80 0.00 36.47 4.41
712 752 3.066380 GGTAAACTTTTTGCCCAGCATG 58.934 45.455 0.00 0.00 38.76 4.06
715 755 1.122227 ACTTTTTGCCCAGCATGTGT 58.878 45.000 0.00 0.00 38.76 3.72
773 817 4.083003 CCTGATTAGCCGTAAACAAAAGCA 60.083 41.667 0.00 0.00 0.00 3.91
774 818 4.789784 TGATTAGCCGTAAACAAAAGCAC 58.210 39.130 0.00 0.00 0.00 4.40
775 819 4.517453 TGATTAGCCGTAAACAAAAGCACT 59.483 37.500 0.00 0.00 0.00 4.40
801 1251 3.880490 AGAAGTCTATCTAGTCTGGTGCG 59.120 47.826 0.00 0.00 0.00 5.34
802 1252 3.284793 AGTCTATCTAGTCTGGTGCGT 57.715 47.619 0.00 0.00 0.00 5.24
803 1253 2.946329 AGTCTATCTAGTCTGGTGCGTG 59.054 50.000 0.00 0.00 0.00 5.34
804 1254 1.676529 TCTATCTAGTCTGGTGCGTGC 59.323 52.381 0.00 0.00 0.00 5.34
806 1256 1.595993 ATCTAGTCTGGTGCGTGCGT 61.596 55.000 0.00 0.00 0.00 5.24
1135 1977 3.335534 GTCACGGCGTGTCACACC 61.336 66.667 35.65 15.99 34.79 4.16
1339 2196 3.553437 AACCAGTCTGCCGTCGACG 62.553 63.158 30.33 30.33 36.53 5.12
1994 2857 1.561643 TCAATCAGGAGACCGAAGCT 58.438 50.000 0.00 0.00 0.00 3.74
1996 2859 1.480137 CAATCAGGAGACCGAAGCTCT 59.520 52.381 0.00 0.00 32.98 4.09
2059 2924 6.433766 GCAGCAGCTCCAGTAATTAATTAAG 58.566 40.000 9.48 5.10 37.91 1.85
2192 3078 2.964925 TGGCGTTCGTGTGTGAGC 60.965 61.111 0.00 0.00 0.00 4.26
2355 3243 4.401202 TCTCGAATCTGTGTGCCACTAATA 59.599 41.667 0.00 0.00 35.11 0.98
2359 3247 5.050091 CGAATCTGTGTGCCACTAATAATCC 60.050 44.000 0.00 0.00 35.11 3.01
2377 3265 3.988379 TCCATGTGCTTGACTTTGTTC 57.012 42.857 0.00 0.00 0.00 3.18
2381 3269 5.534278 TCCATGTGCTTGACTTTGTTCATTA 59.466 36.000 0.00 0.00 0.00 1.90
2414 3302 0.827368 AAGGATCGGCTCTGGACTTC 59.173 55.000 0.00 0.00 0.00 3.01
2501 3405 1.712401 GCTCAGTGAGTCTCAGCTTG 58.288 55.000 21.06 2.91 37.31 4.01
2502 3406 1.712401 CTCAGTGAGTCTCAGCTTGC 58.288 55.000 12.28 0.00 0.00 4.01
2503 3407 1.273048 CTCAGTGAGTCTCAGCTTGCT 59.727 52.381 12.28 0.00 0.00 3.91
2504 3408 1.690893 TCAGTGAGTCTCAGCTTGCTT 59.309 47.619 1.75 0.00 0.00 3.91
2520 3424 5.981915 AGCTTGCTTGAATTCTTTGACTTTC 59.018 36.000 7.05 0.00 0.00 2.62
2570 3474 5.105310 GGCACTTGTACCAATAGAGAAGAGA 60.105 44.000 0.00 0.00 0.00 3.10
2571 3475 6.039616 GCACTTGTACCAATAGAGAAGAGAG 58.960 44.000 0.00 0.00 0.00 3.20
2572 3476 6.039616 CACTTGTACCAATAGAGAAGAGAGC 58.960 44.000 0.00 0.00 0.00 4.09
2573 3477 5.955355 ACTTGTACCAATAGAGAAGAGAGCT 59.045 40.000 0.00 0.00 0.00 4.09
2574 3478 6.439058 ACTTGTACCAATAGAGAAGAGAGCTT 59.561 38.462 0.00 0.00 36.96 3.74
2575 3479 7.616150 ACTTGTACCAATAGAGAAGAGAGCTTA 59.384 37.037 0.00 0.00 33.61 3.09
2576 3480 7.956328 TGTACCAATAGAGAAGAGAGCTTAA 57.044 36.000 0.00 0.00 33.61 1.85
2577 3481 7.773149 TGTACCAATAGAGAAGAGAGCTTAAC 58.227 38.462 0.00 0.00 33.61 2.01
2578 3482 6.228616 ACCAATAGAGAAGAGAGCTTAACC 57.771 41.667 0.00 0.00 33.61 2.85
2579 3483 5.721960 ACCAATAGAGAAGAGAGCTTAACCA 59.278 40.000 0.00 0.00 33.61 3.67
2580 3484 6.385467 ACCAATAGAGAAGAGAGCTTAACCAT 59.615 38.462 0.00 0.00 33.61 3.55
2581 3485 6.928492 CCAATAGAGAAGAGAGCTTAACCATC 59.072 42.308 0.00 0.00 33.61 3.51
2582 3486 6.664428 ATAGAGAAGAGAGCTTAACCATCC 57.336 41.667 0.00 0.00 33.61 3.51
2583 3487 4.357325 AGAGAAGAGAGCTTAACCATCCA 58.643 43.478 0.00 0.00 33.61 3.41
2584 3488 4.968080 AGAGAAGAGAGCTTAACCATCCAT 59.032 41.667 0.00 0.00 33.61 3.41
2585 3489 5.070313 AGAGAAGAGAGCTTAACCATCCATC 59.930 44.000 0.00 0.00 33.61 3.51
2586 3490 4.718774 AGAAGAGAGCTTAACCATCCATCA 59.281 41.667 0.00 0.00 33.61 3.07
2587 3491 4.686191 AGAGAGCTTAACCATCCATCAG 57.314 45.455 0.00 0.00 0.00 2.90
2588 3492 4.036518 AGAGAGCTTAACCATCCATCAGT 58.963 43.478 0.00 0.00 0.00 3.41
2589 3493 4.472833 AGAGAGCTTAACCATCCATCAGTT 59.527 41.667 0.00 0.00 0.00 3.16
2590 3494 5.045286 AGAGAGCTTAACCATCCATCAGTTT 60.045 40.000 0.00 0.00 0.00 2.66
2591 3495 4.946157 AGAGCTTAACCATCCATCAGTTTG 59.054 41.667 0.00 0.00 0.00 2.93
2592 3496 4.019174 AGCTTAACCATCCATCAGTTTGG 58.981 43.478 0.00 0.00 38.18 3.28
2593 3497 3.763897 GCTTAACCATCCATCAGTTTGGT 59.236 43.478 0.00 0.00 44.20 3.67
2594 3498 4.947388 GCTTAACCATCCATCAGTTTGGTA 59.053 41.667 0.00 0.00 41.53 3.25
2595 3499 5.594317 GCTTAACCATCCATCAGTTTGGTAT 59.406 40.000 0.00 0.00 41.53 2.73
2596 3500 6.770785 GCTTAACCATCCATCAGTTTGGTATA 59.229 38.462 0.00 0.00 41.53 1.47
2597 3501 7.448469 GCTTAACCATCCATCAGTTTGGTATAT 59.552 37.037 0.00 0.00 41.53 0.86
2600 3504 8.691661 AACCATCCATCAGTTTGGTATATAAC 57.308 34.615 0.00 0.00 41.53 1.89
2601 3505 8.045720 ACCATCCATCAGTTTGGTATATAACT 57.954 34.615 0.00 0.00 40.62 2.24
2610 3514 7.253905 AGTTTGGTATATAACTGAGGTGTGT 57.746 36.000 0.00 0.00 33.55 3.72
2611 3515 8.370266 AGTTTGGTATATAACTGAGGTGTGTA 57.630 34.615 0.00 0.00 33.55 2.90
2612 3516 8.818860 AGTTTGGTATATAACTGAGGTGTGTAA 58.181 33.333 0.00 0.00 33.55 2.41
2613 3517 9.609346 GTTTGGTATATAACTGAGGTGTGTAAT 57.391 33.333 0.00 0.00 0.00 1.89
2614 3518 9.607988 TTTGGTATATAACTGAGGTGTGTAATG 57.392 33.333 0.00 0.00 0.00 1.90
2615 3519 7.732025 TGGTATATAACTGAGGTGTGTAATGG 58.268 38.462 0.00 0.00 0.00 3.16
2616 3520 7.565768 TGGTATATAACTGAGGTGTGTAATGGA 59.434 37.037 0.00 0.00 0.00 3.41
2617 3521 8.426489 GGTATATAACTGAGGTGTGTAATGGAA 58.574 37.037 0.00 0.00 0.00 3.53
2618 3522 9.257651 GTATATAACTGAGGTGTGTAATGGAAC 57.742 37.037 0.00 0.00 0.00 3.62
2619 3523 3.040147 ACTGAGGTGTGTAATGGAACG 57.960 47.619 0.00 0.00 0.00 3.95
2620 3524 1.732259 CTGAGGTGTGTAATGGAACGC 59.268 52.381 0.00 0.00 0.00 4.84
2621 3525 0.719465 GAGGTGTGTAATGGAACGCG 59.281 55.000 3.53 3.53 32.43 6.01
2622 3526 0.672401 AGGTGTGTAATGGAACGCGG 60.672 55.000 12.47 0.00 32.43 6.46
2623 3527 1.641123 GGTGTGTAATGGAACGCGGG 61.641 60.000 12.47 0.00 32.43 6.13
2624 3528 1.376166 TGTGTAATGGAACGCGGGG 60.376 57.895 12.47 0.00 32.43 5.73
2625 3529 1.078988 GTGTAATGGAACGCGGGGA 60.079 57.895 12.47 0.00 0.00 4.81
2626 3530 0.463116 GTGTAATGGAACGCGGGGAT 60.463 55.000 12.47 0.00 0.00 3.85
2627 3531 0.462937 TGTAATGGAACGCGGGGATG 60.463 55.000 12.47 0.00 0.00 3.51
2628 3532 0.179067 GTAATGGAACGCGGGGATGA 60.179 55.000 12.47 0.00 0.00 2.92
2629 3533 0.762418 TAATGGAACGCGGGGATGAT 59.238 50.000 12.47 0.00 0.00 2.45
2630 3534 0.535102 AATGGAACGCGGGGATGATC 60.535 55.000 12.47 0.00 0.00 2.92
2631 3535 2.661866 GGAACGCGGGGATGATCG 60.662 66.667 12.47 0.00 0.00 3.69
2632 3536 2.415843 GAACGCGGGGATGATCGA 59.584 61.111 12.47 0.00 0.00 3.59
2633 3537 1.006102 GAACGCGGGGATGATCGAT 60.006 57.895 12.47 0.00 0.00 3.59
2634 3538 0.242825 GAACGCGGGGATGATCGATA 59.757 55.000 12.47 0.00 0.00 2.92
2635 3539 0.243907 AACGCGGGGATGATCGATAG 59.756 55.000 12.47 0.00 0.00 2.08
2636 3540 1.139734 CGCGGGGATGATCGATAGG 59.860 63.158 0.00 0.00 0.00 2.57
2637 3541 1.517832 GCGGGGATGATCGATAGGG 59.482 63.158 0.00 0.00 0.00 3.53
2638 3542 1.517832 CGGGGATGATCGATAGGGC 59.482 63.158 0.00 0.00 0.00 5.19
2639 3543 1.257750 CGGGGATGATCGATAGGGCA 61.258 60.000 0.00 0.00 0.00 5.36
2640 3544 0.539051 GGGGATGATCGATAGGGCAG 59.461 60.000 0.00 0.00 0.00 4.85
2641 3545 1.270907 GGGATGATCGATAGGGCAGT 58.729 55.000 0.00 0.00 0.00 4.40
2642 3546 1.066573 GGGATGATCGATAGGGCAGTG 60.067 57.143 0.00 0.00 0.00 3.66
2643 3547 1.895798 GGATGATCGATAGGGCAGTGA 59.104 52.381 0.00 0.00 0.00 3.41
2644 3548 2.499289 GGATGATCGATAGGGCAGTGAT 59.501 50.000 0.00 0.00 0.00 3.06
2645 3549 3.701542 GGATGATCGATAGGGCAGTGATA 59.298 47.826 0.00 0.00 0.00 2.15
2646 3550 4.202101 GGATGATCGATAGGGCAGTGATAG 60.202 50.000 0.00 0.00 0.00 2.08
2647 3551 3.092301 TGATCGATAGGGCAGTGATAGG 58.908 50.000 0.00 0.00 0.00 2.57
2648 3552 1.257743 TCGATAGGGCAGTGATAGGC 58.742 55.000 0.00 0.00 0.00 3.93
2649 3553 0.109086 CGATAGGGCAGTGATAGGCG 60.109 60.000 0.00 0.00 0.00 5.52
2650 3554 0.390472 GATAGGGCAGTGATAGGCGC 60.390 60.000 0.00 0.00 42.61 6.53
2651 3555 1.831652 ATAGGGCAGTGATAGGCGCC 61.832 60.000 21.89 21.89 43.22 6.53
2670 3574 4.371590 GCGCACCGGCCCAAAATT 62.372 61.111 0.30 0.00 36.38 1.82
2671 3575 2.126110 CGCACCGGCCCAAAATTC 60.126 61.111 0.00 0.00 36.38 2.17
2672 3576 2.126110 GCACCGGCCCAAAATTCG 60.126 61.111 0.00 0.00 0.00 3.34
2673 3577 2.571231 CACCGGCCCAAAATTCGG 59.429 61.111 0.00 0.00 46.95 4.30
2674 3578 3.378602 ACCGGCCCAAAATTCGGC 61.379 61.111 0.00 2.25 45.65 5.54
2678 3582 3.378602 GCCCAAAATTCGGCCGGT 61.379 61.111 27.83 12.19 39.39 5.28
2679 3583 2.882132 CCCAAAATTCGGCCGGTC 59.118 61.111 27.83 0.00 0.00 4.79
2680 3584 2.483288 CCAAAATTCGGCCGGTCG 59.517 61.111 25.52 25.52 0.00 4.79
2681 3585 2.483288 CAAAATTCGGCCGGTCGG 59.517 61.111 30.66 10.38 38.57 4.79
2698 3602 3.303605 GCTGCTGAGCGTACGATG 58.696 61.111 21.65 2.41 34.87 3.84
2699 3603 2.864931 GCTGCTGAGCGTACGATGC 61.865 63.158 21.65 14.38 34.87 3.91
2700 3604 1.517039 CTGCTGAGCGTACGATGCA 60.517 57.895 21.65 18.45 31.07 3.96
2701 3605 1.477826 CTGCTGAGCGTACGATGCAG 61.478 60.000 24.93 24.93 41.15 4.41
2702 3606 1.226688 GCTGAGCGTACGATGCAGA 60.227 57.895 26.04 4.60 31.07 4.26
2703 3607 1.475441 GCTGAGCGTACGATGCAGAC 61.475 60.000 26.04 17.35 31.07 3.51
2704 3608 0.099613 CTGAGCGTACGATGCAGACT 59.900 55.000 21.65 3.97 31.07 3.24
2705 3609 0.526211 TGAGCGTACGATGCAGACTT 59.474 50.000 21.65 0.00 31.07 3.01
2706 3610 1.067846 TGAGCGTACGATGCAGACTTT 60.068 47.619 21.65 0.00 31.07 2.66
2707 3611 1.993370 GAGCGTACGATGCAGACTTTT 59.007 47.619 21.65 0.00 31.07 2.27
2708 3612 2.412089 GAGCGTACGATGCAGACTTTTT 59.588 45.455 21.65 0.00 31.07 1.94
2709 3613 2.412089 AGCGTACGATGCAGACTTTTTC 59.588 45.455 21.65 0.00 31.07 2.29
2710 3614 2.156891 GCGTACGATGCAGACTTTTTCA 59.843 45.455 21.65 0.00 0.00 2.69
2711 3615 3.363575 GCGTACGATGCAGACTTTTTCAA 60.364 43.478 21.65 0.00 0.00 2.69
2712 3616 4.141680 CGTACGATGCAGACTTTTTCAAC 58.858 43.478 10.44 0.00 0.00 3.18
2713 3617 3.253371 ACGATGCAGACTTTTTCAACG 57.747 42.857 0.00 0.00 0.00 4.10
2714 3618 2.869801 ACGATGCAGACTTTTTCAACGA 59.130 40.909 0.00 0.00 0.00 3.85
2715 3619 3.498397 ACGATGCAGACTTTTTCAACGAT 59.502 39.130 0.00 0.00 0.00 3.73
2716 3620 4.688879 ACGATGCAGACTTTTTCAACGATA 59.311 37.500 0.00 0.00 0.00 2.92
2717 3621 5.015733 CGATGCAGACTTTTTCAACGATAC 58.984 41.667 0.00 0.00 0.00 2.24
2718 3622 5.389411 CGATGCAGACTTTTTCAACGATACA 60.389 40.000 0.00 0.00 0.00 2.29
2719 3623 5.743026 TGCAGACTTTTTCAACGATACAA 57.257 34.783 0.00 0.00 0.00 2.41
2720 3624 5.507077 TGCAGACTTTTTCAACGATACAAC 58.493 37.500 0.00 0.00 0.00 3.32
2721 3625 5.295787 TGCAGACTTTTTCAACGATACAACT 59.704 36.000 0.00 0.00 0.00 3.16
2722 3626 6.183360 TGCAGACTTTTTCAACGATACAACTT 60.183 34.615 0.00 0.00 0.00 2.66
2723 3627 6.691388 GCAGACTTTTTCAACGATACAACTTT 59.309 34.615 0.00 0.00 0.00 2.66
2724 3628 7.220108 GCAGACTTTTTCAACGATACAACTTTT 59.780 33.333 0.00 0.00 0.00 2.27
2725 3629 8.734030 CAGACTTTTTCAACGATACAACTTTTC 58.266 33.333 0.00 0.00 0.00 2.29
2726 3630 7.913821 AGACTTTTTCAACGATACAACTTTTCC 59.086 33.333 0.00 0.00 0.00 3.13
2727 3631 7.768240 ACTTTTTCAACGATACAACTTTTCCT 58.232 30.769 0.00 0.00 0.00 3.36
2728 3632 8.248253 ACTTTTTCAACGATACAACTTTTCCTT 58.752 29.630 0.00 0.00 0.00 3.36
2729 3633 8.989653 TTTTTCAACGATACAACTTTTCCTTT 57.010 26.923 0.00 0.00 0.00 3.11
2730 3634 7.979115 TTTCAACGATACAACTTTTCCTTTG 57.021 32.000 0.00 0.00 0.00 2.77
2731 3635 6.687081 TCAACGATACAACTTTTCCTTTGT 57.313 33.333 0.00 0.00 39.31 2.83
2732 3636 6.721321 TCAACGATACAACTTTTCCTTTGTC 58.279 36.000 0.00 0.00 37.19 3.18
2733 3637 6.540914 TCAACGATACAACTTTTCCTTTGTCT 59.459 34.615 0.00 0.00 37.19 3.41
2734 3638 6.541111 ACGATACAACTTTTCCTTTGTCTC 57.459 37.500 0.00 0.00 37.19 3.36
2735 3639 6.289064 ACGATACAACTTTTCCTTTGTCTCT 58.711 36.000 0.00 0.00 37.19 3.10
2736 3640 7.439381 ACGATACAACTTTTCCTTTGTCTCTA 58.561 34.615 0.00 0.00 37.19 2.43
2737 3641 7.929785 ACGATACAACTTTTCCTTTGTCTCTAA 59.070 33.333 0.00 0.00 37.19 2.10
2738 3642 8.770828 CGATACAACTTTTCCTTTGTCTCTAAA 58.229 33.333 0.00 0.00 37.19 1.85
2742 3646 8.803235 ACAACTTTTCCTTTGTCTCTAAAAAGT 58.197 29.630 5.47 5.47 44.43 2.66
2743 3647 9.290483 CAACTTTTCCTTTGTCTCTAAAAAGTC 57.710 33.333 10.41 0.00 42.77 3.01
2744 3648 8.575649 ACTTTTCCTTTGTCTCTAAAAAGTCA 57.424 30.769 5.47 0.00 40.85 3.41
2745 3649 9.020731 ACTTTTCCTTTGTCTCTAAAAAGTCAA 57.979 29.630 5.47 0.00 40.85 3.18
2746 3650 9.290483 CTTTTCCTTTGTCTCTAAAAAGTCAAC 57.710 33.333 0.00 0.00 32.57 3.18
2747 3651 6.937436 TCCTTTGTCTCTAAAAAGTCAACC 57.063 37.500 0.00 0.00 32.57 3.77
2748 3652 6.419791 TCCTTTGTCTCTAAAAAGTCAACCA 58.580 36.000 0.00 0.00 32.57 3.67
2749 3653 6.317893 TCCTTTGTCTCTAAAAAGTCAACCAC 59.682 38.462 0.00 0.00 32.57 4.16
2750 3654 5.728351 TTGTCTCTAAAAAGTCAACCACG 57.272 39.130 0.00 0.00 0.00 4.94
2751 3655 3.558418 TGTCTCTAAAAAGTCAACCACGC 59.442 43.478 0.00 0.00 0.00 5.34
2752 3656 3.808174 GTCTCTAAAAAGTCAACCACGCT 59.192 43.478 0.00 0.00 0.00 5.07
2753 3657 3.807622 TCTCTAAAAAGTCAACCACGCTG 59.192 43.478 0.00 0.00 0.00 5.18
2754 3658 2.875933 TCTAAAAAGTCAACCACGCTGG 59.124 45.455 2.92 2.92 45.02 4.85
2755 3659 1.757682 AAAAAGTCAACCACGCTGGA 58.242 45.000 10.46 0.00 40.96 3.86
2756 3660 1.757682 AAAAGTCAACCACGCTGGAA 58.242 45.000 10.46 0.00 40.96 3.53
2757 3661 1.757682 AAAGTCAACCACGCTGGAAA 58.242 45.000 10.46 0.00 40.96 3.13
2758 3662 1.757682 AAGTCAACCACGCTGGAAAA 58.242 45.000 10.46 0.00 40.96 2.29
2759 3663 1.757682 AGTCAACCACGCTGGAAAAA 58.242 45.000 10.46 0.00 40.96 1.94
2760 3664 1.676006 AGTCAACCACGCTGGAAAAAG 59.324 47.619 10.46 0.00 40.96 2.27
2761 3665 1.028905 TCAACCACGCTGGAAAAAGG 58.971 50.000 10.46 0.00 40.96 3.11
2762 3666 0.744281 CAACCACGCTGGAAAAAGGT 59.256 50.000 10.46 0.00 40.96 3.50
2763 3667 1.950909 CAACCACGCTGGAAAAAGGTA 59.049 47.619 10.46 0.00 40.96 3.08
2764 3668 1.892209 ACCACGCTGGAAAAAGGTAG 58.108 50.000 10.46 0.00 40.96 3.18
2765 3669 0.521735 CCACGCTGGAAAAAGGTAGC 59.478 55.000 0.00 0.00 40.96 3.58
2865 3769 0.966179 CACCCCTAACCCTTTTGTGC 59.034 55.000 0.00 0.00 0.00 4.57
3325 4263 3.256631 AGATGTGAGATGTTTGTTTGCCC 59.743 43.478 0.00 0.00 0.00 5.36
3356 4305 7.255139 GGCTTTGTTAGTATGCTAGGGTTATTG 60.255 40.741 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.631377 CGTACATTCAGGTGATGTGAACAT 59.369 41.667 0.00 0.00 36.76 2.71
55 56 3.993736 CGTACATTCAGGTGATGTGAACA 59.006 43.478 0.00 0.00 36.76 3.18
56 57 3.370978 CCGTACATTCAGGTGATGTGAAC 59.629 47.826 0.00 0.00 36.76 3.18
57 58 3.595173 CCGTACATTCAGGTGATGTGAA 58.405 45.455 0.00 0.00 38.28 3.18
58 59 2.676750 GCCGTACATTCAGGTGATGTGA 60.677 50.000 0.00 0.00 0.00 3.58
59 60 1.665679 GCCGTACATTCAGGTGATGTG 59.334 52.381 0.00 0.42 0.00 3.21
60 61 1.406887 GGCCGTACATTCAGGTGATGT 60.407 52.381 0.00 0.00 0.00 3.06
61 62 1.299541 GGCCGTACATTCAGGTGATG 58.700 55.000 0.00 0.00 0.00 3.07
62 63 0.180406 GGGCCGTACATTCAGGTGAT 59.820 55.000 0.00 0.00 0.00 3.06
63 64 1.195442 TGGGCCGTACATTCAGGTGA 61.195 55.000 0.00 0.00 0.00 4.02
64 65 0.107214 ATGGGCCGTACATTCAGGTG 60.107 55.000 0.00 0.00 0.00 4.00
65 66 1.502690 TATGGGCCGTACATTCAGGT 58.497 50.000 0.00 0.00 0.00 4.00
66 67 2.631160 TTATGGGCCGTACATTCAGG 57.369 50.000 4.57 0.00 0.00 3.86
67 68 5.514274 AATTTTATGGGCCGTACATTCAG 57.486 39.130 4.57 0.00 0.00 3.02
68 69 5.923733 AAATTTTATGGGCCGTACATTCA 57.076 34.783 4.57 0.00 0.00 2.57
69 70 6.334202 TGAAAATTTTATGGGCCGTACATTC 58.666 36.000 4.57 6.60 0.00 2.67
70 71 6.287589 TGAAAATTTTATGGGCCGTACATT 57.712 33.333 4.57 4.36 0.00 2.71
71 72 5.163457 CCTGAAAATTTTATGGGCCGTACAT 60.163 40.000 4.57 0.00 0.00 2.29
72 73 4.158764 CCTGAAAATTTTATGGGCCGTACA 59.841 41.667 4.57 0.00 0.00 2.90
73 74 4.158949 ACCTGAAAATTTTATGGGCCGTAC 59.841 41.667 19.53 0.00 0.00 3.67
74 75 4.345854 ACCTGAAAATTTTATGGGCCGTA 58.654 39.130 19.53 0.00 0.00 4.02
75 76 3.169908 ACCTGAAAATTTTATGGGCCGT 58.830 40.909 19.53 2.58 0.00 5.68
76 77 3.430236 GGACCTGAAAATTTTATGGGCCG 60.430 47.826 23.06 2.15 33.19 6.13
77 78 3.517500 TGGACCTGAAAATTTTATGGGCC 59.482 43.478 27.40 27.40 39.72 5.80
78 79 4.817318 TGGACCTGAAAATTTTATGGGC 57.183 40.909 19.53 17.63 0.00 5.36
79 80 8.102676 AGAATTTGGACCTGAAAATTTTATGGG 58.897 33.333 19.53 15.88 36.40 4.00
88 89 9.137459 TGTGTATTTAGAATTTGGACCTGAAAA 57.863 29.630 0.00 0.00 0.00 2.29
89 90 8.698973 TGTGTATTTAGAATTTGGACCTGAAA 57.301 30.769 0.00 0.00 0.00 2.69
90 91 8.877864 ATGTGTATTTAGAATTTGGACCTGAA 57.122 30.769 0.00 0.00 0.00 3.02
91 92 8.739039 CAATGTGTATTTAGAATTTGGACCTGA 58.261 33.333 0.00 0.00 0.00 3.86
92 93 8.739039 TCAATGTGTATTTAGAATTTGGACCTG 58.261 33.333 0.00 0.00 0.00 4.00
93 94 8.877864 TCAATGTGTATTTAGAATTTGGACCT 57.122 30.769 0.00 0.00 0.00 3.85
94 95 8.956426 TCTCAATGTGTATTTAGAATTTGGACC 58.044 33.333 0.00 0.00 0.00 4.46
125 126 9.082313 ACTATTCACATCCAGATTTGTCTTTTT 57.918 29.630 0.00 0.00 0.00 1.94
126 127 8.517878 CACTATTCACATCCAGATTTGTCTTTT 58.482 33.333 0.00 0.00 0.00 2.27
127 128 7.884877 TCACTATTCACATCCAGATTTGTCTTT 59.115 33.333 0.00 0.00 0.00 2.52
128 129 7.397221 TCACTATTCACATCCAGATTTGTCTT 58.603 34.615 0.00 0.00 0.00 3.01
129 130 6.950842 TCACTATTCACATCCAGATTTGTCT 58.049 36.000 0.00 0.00 0.00 3.41
130 131 7.281774 ACATCACTATTCACATCCAGATTTGTC 59.718 37.037 0.00 0.00 0.00 3.18
131 132 7.114754 ACATCACTATTCACATCCAGATTTGT 58.885 34.615 0.00 0.00 0.00 2.83
132 133 7.563888 ACATCACTATTCACATCCAGATTTG 57.436 36.000 0.00 0.00 0.00 2.32
133 134 8.585471 AAACATCACTATTCACATCCAGATTT 57.415 30.769 0.00 0.00 0.00 2.17
134 135 8.464404 CAAAACATCACTATTCACATCCAGATT 58.536 33.333 0.00 0.00 0.00 2.40
135 136 7.830697 TCAAAACATCACTATTCACATCCAGAT 59.169 33.333 0.00 0.00 0.00 2.90
136 137 7.119699 GTCAAAACATCACTATTCACATCCAGA 59.880 37.037 0.00 0.00 0.00 3.86
137 138 7.120285 AGTCAAAACATCACTATTCACATCCAG 59.880 37.037 0.00 0.00 0.00 3.86
138 139 6.942005 AGTCAAAACATCACTATTCACATCCA 59.058 34.615 0.00 0.00 0.00 3.41
139 140 7.383102 AGTCAAAACATCACTATTCACATCC 57.617 36.000 0.00 0.00 0.00 3.51
140 141 9.683069 AAAAGTCAAAACATCACTATTCACATC 57.317 29.630 0.00 0.00 0.00 3.06
141 142 9.467258 CAAAAGTCAAAACATCACTATTCACAT 57.533 29.630 0.00 0.00 0.00 3.21
142 143 8.465999 ACAAAAGTCAAAACATCACTATTCACA 58.534 29.630 0.00 0.00 0.00 3.58
143 144 8.856490 ACAAAAGTCAAAACATCACTATTCAC 57.144 30.769 0.00 0.00 0.00 3.18
144 145 8.902806 AGACAAAAGTCAAAACATCACTATTCA 58.097 29.630 0.00 0.00 0.00 2.57
145 146 9.736023 AAGACAAAAGTCAAAACATCACTATTC 57.264 29.630 0.00 0.00 0.00 1.75
148 149 9.921637 AAAAAGACAAAAGTCAAAACATCACTA 57.078 25.926 0.00 0.00 0.00 2.74
149 150 8.831715 AAAAAGACAAAAGTCAAAACATCACT 57.168 26.923 0.00 0.00 0.00 3.41
171 172 9.258826 CAAATCCAACATGAATAGTGTCAAAAA 57.741 29.630 0.00 0.00 0.00 1.94
172 173 8.420222 ACAAATCCAACATGAATAGTGTCAAAA 58.580 29.630 0.00 0.00 0.00 2.44
173 174 7.950512 ACAAATCCAACATGAATAGTGTCAAA 58.049 30.769 0.00 0.00 0.00 2.69
174 175 7.448161 AGACAAATCCAACATGAATAGTGTCAA 59.552 33.333 0.00 0.00 35.29 3.18
175 176 6.942005 AGACAAATCCAACATGAATAGTGTCA 59.058 34.615 0.00 0.00 35.29 3.58
176 177 7.383102 AGACAAATCCAACATGAATAGTGTC 57.617 36.000 0.00 4.35 33.51 3.67
177 178 7.765695 AAGACAAATCCAACATGAATAGTGT 57.234 32.000 0.00 0.00 0.00 3.55
178 179 9.480053 AAAAAGACAAATCCAACATGAATAGTG 57.520 29.630 0.00 0.00 0.00 2.74
222 223 9.638239 CCTAAAAATTTCAGATCCAAATTCGAA 57.362 29.630 0.00 0.00 33.24 3.71
223 224 8.250332 CCCTAAAAATTTCAGATCCAAATTCGA 58.750 33.333 11.54 0.00 33.24 3.71
224 225 8.250332 TCCCTAAAAATTTCAGATCCAAATTCG 58.750 33.333 11.54 4.16 33.24 3.34
227 228 9.895138 CAATCCCTAAAAATTTCAGATCCAAAT 57.105 29.630 0.00 0.00 0.00 2.32
228 229 8.879227 ACAATCCCTAAAAATTTCAGATCCAAA 58.121 29.630 0.00 0.00 0.00 3.28
229 230 8.434589 ACAATCCCTAAAAATTTCAGATCCAA 57.565 30.769 0.00 0.00 0.00 3.53
230 231 8.966868 GTACAATCCCTAAAAATTTCAGATCCA 58.033 33.333 0.00 0.00 0.00 3.41
231 232 8.966868 TGTACAATCCCTAAAAATTTCAGATCC 58.033 33.333 0.00 0.00 0.00 3.36
234 235 8.966868 GGATGTACAATCCCTAAAAATTTCAGA 58.033 33.333 0.00 0.00 32.09 3.27
235 236 8.748412 TGGATGTACAATCCCTAAAAATTTCAG 58.252 33.333 16.79 0.00 37.40 3.02
236 237 8.657387 TGGATGTACAATCCCTAAAAATTTCA 57.343 30.769 16.79 0.00 37.40 2.69
237 238 9.533253 CATGGATGTACAATCCCTAAAAATTTC 57.467 33.333 16.79 0.00 37.40 2.17
238 239 9.045745 ACATGGATGTACAATCCCTAAAAATTT 57.954 29.630 16.79 0.00 39.68 1.82
239 240 8.477256 CACATGGATGTACAATCCCTAAAAATT 58.523 33.333 16.79 0.00 39.39 1.82
240 241 7.838696 TCACATGGATGTACAATCCCTAAAAAT 59.161 33.333 16.79 5.07 39.39 1.82
241 242 7.122055 GTCACATGGATGTACAATCCCTAAAAA 59.878 37.037 16.79 3.44 39.39 1.94
242 243 6.601613 GTCACATGGATGTACAATCCCTAAAA 59.398 38.462 16.79 3.96 39.39 1.52
243 244 6.119536 GTCACATGGATGTACAATCCCTAAA 58.880 40.000 16.79 4.23 39.39 1.85
244 245 5.680619 GTCACATGGATGTACAATCCCTAA 58.319 41.667 16.79 4.50 39.39 2.69
245 246 4.202212 CGTCACATGGATGTACAATCCCTA 60.202 45.833 16.79 5.02 39.39 3.53
246 247 3.432186 CGTCACATGGATGTACAATCCCT 60.432 47.826 16.79 8.34 39.39 4.20
247 248 2.872245 CGTCACATGGATGTACAATCCC 59.128 50.000 16.79 11.69 39.39 3.85
248 249 3.309682 CACGTCACATGGATGTACAATCC 59.690 47.826 0.00 8.41 43.93 3.01
249 250 4.180817 TCACGTCACATGGATGTACAATC 58.819 43.478 0.00 0.00 43.93 2.67
250 251 4.200838 TCACGTCACATGGATGTACAAT 57.799 40.909 0.00 0.00 43.93 2.71
251 252 3.669251 TCACGTCACATGGATGTACAA 57.331 42.857 0.00 0.00 43.93 2.41
252 253 3.243907 TGTTCACGTCACATGGATGTACA 60.244 43.478 0.00 0.00 43.93 2.90
253 254 3.322369 TGTTCACGTCACATGGATGTAC 58.678 45.455 0.00 0.93 43.93 2.90
254 255 3.669251 TGTTCACGTCACATGGATGTA 57.331 42.857 0.00 0.00 43.93 2.29
255 256 2.542020 TGTTCACGTCACATGGATGT 57.458 45.000 0.00 0.31 46.71 3.06
256 257 2.352651 GGATGTTCACGTCACATGGATG 59.647 50.000 13.45 0.00 34.89 3.51
257 258 2.027285 TGGATGTTCACGTCACATGGAT 60.027 45.455 13.45 0.00 34.89 3.41
258 259 1.346068 TGGATGTTCACGTCACATGGA 59.654 47.619 13.45 0.00 34.89 3.41
259 260 1.464608 GTGGATGTTCACGTCACATGG 59.535 52.381 13.45 0.00 34.89 3.66
260 261 2.142319 TGTGGATGTTCACGTCACATG 58.858 47.619 13.45 0.00 40.31 3.21
261 262 2.542020 TGTGGATGTTCACGTCACAT 57.458 45.000 9.23 9.23 40.31 3.21
262 263 2.317530 TTGTGGATGTTCACGTCACA 57.682 45.000 0.34 0.34 40.31 3.58
263 264 3.896648 AATTGTGGATGTTCACGTCAC 57.103 42.857 1.67 0.00 40.31 3.67
264 265 4.909696 AAAATTGTGGATGTTCACGTCA 57.090 36.364 1.67 0.00 40.31 4.35
319 320 9.645128 AGGTGATATCATGATACCATTTCAAAA 57.355 29.630 22.48 0.00 33.88 2.44
322 323 9.948964 CTTAGGTGATATCATGATACCATTTCA 57.051 33.333 22.48 16.66 33.88 2.69
325 326 8.766476 CCTCTTAGGTGATATCATGATACCATT 58.234 37.037 22.48 13.14 33.88 3.16
326 327 8.316497 CCTCTTAGGTGATATCATGATACCAT 57.684 38.462 22.48 12.66 33.88 3.55
327 328 7.724490 CCTCTTAGGTGATATCATGATACCA 57.276 40.000 22.48 15.78 33.88 3.25
342 343 5.219739 ATCACATGATACCACCTCTTAGGT 58.780 41.667 0.00 0.00 40.43 3.08
343 344 5.815233 ATCACATGATACCACCTCTTAGG 57.185 43.478 0.00 0.00 35.56 2.69
344 345 9.784531 AAAATATCACATGATACCACCTCTTAG 57.215 33.333 0.00 0.00 39.57 2.18
345 346 9.778741 GAAAATATCACATGATACCACCTCTTA 57.221 33.333 0.00 0.00 39.57 2.10
346 347 7.721399 GGAAAATATCACATGATACCACCTCTT 59.279 37.037 0.00 0.00 39.57 2.85
347 348 7.227156 GGAAAATATCACATGATACCACCTCT 58.773 38.462 0.00 0.00 39.57 3.69
348 349 6.431234 GGGAAAATATCACATGATACCACCTC 59.569 42.308 0.00 0.00 39.57 3.85
349 350 6.306987 GGGAAAATATCACATGATACCACCT 58.693 40.000 0.00 0.00 39.57 4.00
350 351 5.476945 GGGGAAAATATCACATGATACCACC 59.523 44.000 0.00 5.93 39.57 4.61
351 352 5.181245 CGGGGAAAATATCACATGATACCAC 59.819 44.000 0.00 1.84 39.57 4.16
352 353 5.312895 CGGGGAAAATATCACATGATACCA 58.687 41.667 0.00 0.00 39.57 3.25
353 354 4.156008 GCGGGGAAAATATCACATGATACC 59.844 45.833 0.00 1.52 39.57 2.73
354 355 5.003804 AGCGGGGAAAATATCACATGATAC 58.996 41.667 0.00 0.00 39.57 2.24
355 356 5.003160 CAGCGGGGAAAATATCACATGATA 58.997 41.667 0.00 4.11 40.85 2.15
356 357 3.822735 CAGCGGGGAAAATATCACATGAT 59.177 43.478 0.00 0.00 38.51 2.45
357 358 3.213506 CAGCGGGGAAAATATCACATGA 58.786 45.455 0.00 0.00 30.77 3.07
358 359 2.287788 GCAGCGGGGAAAATATCACATG 60.288 50.000 0.00 0.00 30.77 3.21
359 360 1.956477 GCAGCGGGGAAAATATCACAT 59.044 47.619 0.00 0.00 30.77 3.21
360 361 1.388547 GCAGCGGGGAAAATATCACA 58.611 50.000 0.00 0.00 30.77 3.58
361 362 0.307760 CGCAGCGGGGAAAATATCAC 59.692 55.000 7.00 0.00 0.00 3.06
362 363 0.817634 CCGCAGCGGGGAAAATATCA 60.818 55.000 27.32 0.00 44.15 2.15
363 364 1.949257 CCGCAGCGGGGAAAATATC 59.051 57.895 27.32 0.00 44.15 1.63
364 365 4.157607 CCGCAGCGGGGAAAATAT 57.842 55.556 27.32 0.00 44.15 1.28
395 396 3.036084 AAACTGTGGTCGAGCGCG 61.036 61.111 21.81 18.04 39.35 6.86
472 473 4.450122 CACACGCAGGCGATGTGC 62.450 66.667 24.63 0.00 43.57 4.57
492 499 1.169577 TTCGTGCACAACAGTTGGTT 58.830 45.000 18.64 0.00 41.47 3.67
493 500 1.135517 GTTTCGTGCACAACAGTTGGT 60.136 47.619 18.64 0.67 34.12 3.67
494 501 1.544686 GTTTCGTGCACAACAGTTGG 58.455 50.000 18.64 7.69 34.12 3.77
495 502 1.132262 AGGTTTCGTGCACAACAGTTG 59.868 47.619 18.64 12.03 0.00 3.16
605 615 2.448926 TGTACCGTGTGATGAAGGTG 57.551 50.000 0.00 0.00 37.57 4.00
620 630 2.161410 TGGTCCGTACGTACACATGTAC 59.839 50.000 24.50 11.44 45.47 2.90
621 631 2.431454 TGGTCCGTACGTACACATGTA 58.569 47.619 24.50 4.25 0.00 2.29
623 633 2.190161 CATGGTCCGTACGTACACATG 58.810 52.381 24.50 23.69 0.00 3.21
624 634 1.820519 ACATGGTCCGTACGTACACAT 59.179 47.619 24.50 18.07 0.00 3.21
628 638 1.199789 TGTCACATGGTCCGTACGTAC 59.800 52.381 15.90 15.90 0.00 3.67
629 639 1.199789 GTGTCACATGGTCCGTACGTA 59.800 52.381 15.21 0.00 0.00 3.57
630 640 0.038892 GTGTCACATGGTCCGTACGT 60.039 55.000 15.21 0.00 0.00 3.57
631 641 0.038983 TGTGTCACATGGTCCGTACG 60.039 55.000 8.69 8.69 0.00 3.67
632 642 2.380084 ATGTGTCACATGGTCCGTAC 57.620 50.000 17.74 0.00 37.45 3.67
633 643 3.181470 CCATATGTGTCACATGGTCCGTA 60.181 47.826 25.63 6.75 39.53 4.02
635 645 2.212652 CCATATGTGTCACATGGTCCG 58.787 52.381 25.63 10.64 39.53 4.79
639 649 5.375773 TGGATTACCATATGTGTCACATGG 58.624 41.667 25.63 22.49 44.04 3.66
640 650 6.940831 TTGGATTACCATATGTGTCACATG 57.059 37.500 25.63 13.24 46.34 3.21
641 651 7.118723 AGTTTGGATTACCATATGTGTCACAT 58.881 34.615 21.70 21.70 46.34 3.21
642 652 6.480763 AGTTTGGATTACCATATGTGTCACA 58.519 36.000 8.40 8.40 46.34 3.58
643 653 7.769044 AGTAGTTTGGATTACCATATGTGTCAC 59.231 37.037 1.24 0.00 46.34 3.67
644 654 7.857456 AGTAGTTTGGATTACCATATGTGTCA 58.143 34.615 1.24 0.00 46.34 3.58
645 655 7.985184 TGAGTAGTTTGGATTACCATATGTGTC 59.015 37.037 1.24 0.00 46.34 3.67
646 656 7.857456 TGAGTAGTTTGGATTACCATATGTGT 58.143 34.615 1.24 2.24 46.34 3.72
647 657 8.731275 TTGAGTAGTTTGGATTACCATATGTG 57.269 34.615 1.24 0.00 46.34 3.21
648 658 9.747898 TTTTGAGTAGTTTGGATTACCATATGT 57.252 29.630 1.24 0.00 46.34 2.29
678 688 7.956943 GCAAAAAGTTTACCGTACGTACATATT 59.043 33.333 24.50 8.30 0.00 1.28
679 689 7.412891 GGCAAAAAGTTTACCGTACGTACATAT 60.413 37.037 24.50 11.78 0.00 1.78
680 690 6.128688 GGCAAAAAGTTTACCGTACGTACATA 60.129 38.462 24.50 13.53 0.00 2.29
681 691 5.334028 GGCAAAAAGTTTACCGTACGTACAT 60.334 40.000 24.50 14.51 0.00 2.29
682 692 4.025313 GGCAAAAAGTTTACCGTACGTACA 60.025 41.667 24.50 3.26 0.00 2.90
702 712 2.283101 GGGAACACATGCTGGGCA 60.283 61.111 0.00 0.00 44.86 5.36
703 713 3.443045 CGGGAACACATGCTGGGC 61.443 66.667 0.00 0.00 0.00 5.36
706 716 1.135315 CATTTCCGGGAACACATGCTG 60.135 52.381 9.46 0.00 0.00 4.41
707 717 1.176527 CATTTCCGGGAACACATGCT 58.823 50.000 9.46 0.00 0.00 3.79
731 771 1.545706 GGGCGGTTTCTCTCTCTGGT 61.546 60.000 0.00 0.00 0.00 4.00
840 1312 3.431725 GGTTTCTCCCCGCGCAAG 61.432 66.667 8.75 0.00 43.44 4.01
841 1313 3.561120 ATGGTTTCTCCCCGCGCAA 62.561 57.895 8.75 0.00 34.77 4.85
842 1314 3.969250 GATGGTTTCTCCCCGCGCA 62.969 63.158 8.75 0.00 34.77 6.09
843 1315 3.202706 GATGGTTTCTCCCCGCGC 61.203 66.667 0.00 0.00 34.77 6.86
844 1316 2.513897 GGATGGTTTCTCCCCGCG 60.514 66.667 0.00 0.00 34.77 6.46
845 1317 2.124278 GGGATGGTTTCTCCCCGC 60.124 66.667 0.00 0.00 45.80 6.13
849 1321 2.124278 GGCCGGGATGGTTTCTCC 60.124 66.667 2.18 0.00 41.21 3.71
850 1322 2.513897 CGGCCGGGATGGTTTCTC 60.514 66.667 20.10 0.00 41.21 2.87
1135 1977 1.691163 GGGAGAGGGAAAGAGAGAGGG 60.691 61.905 0.00 0.00 0.00 4.30
1319 2176 3.414700 CGACGGCAGACTGGTTGC 61.415 66.667 4.26 0.00 40.80 4.17
1994 2857 3.456365 GAGGAGCGCTGCTGGAGA 61.456 66.667 37.09 0.00 39.88 3.71
2089 2958 6.363065 ACAGAAGAATGATGCATGGTAGAAT 58.637 36.000 2.46 0.00 0.00 2.40
2091 2960 5.363562 ACAGAAGAATGATGCATGGTAGA 57.636 39.130 2.46 0.00 0.00 2.59
2092 2961 6.519382 TCTACAGAAGAATGATGCATGGTAG 58.481 40.000 2.46 2.41 0.00 3.18
2093 2962 6.484364 TCTACAGAAGAATGATGCATGGTA 57.516 37.500 2.46 0.00 0.00 3.25
2094 2963 5.363562 TCTACAGAAGAATGATGCATGGT 57.636 39.130 2.46 0.00 0.00 3.55
2096 2965 8.833493 TGTTTATCTACAGAAGAATGATGCATG 58.167 33.333 2.46 0.00 37.89 4.06
2167 3053 1.154727 CACGAACGCCACGCTTAAC 60.155 57.895 0.00 0.00 0.00 2.01
2307 3194 1.799548 GCTAGCTGCACTCGGAAGTAC 60.800 57.143 7.70 0.00 42.31 2.73
2308 3195 0.456221 GCTAGCTGCACTCGGAAGTA 59.544 55.000 7.70 0.00 42.31 2.24
2309 3196 1.216710 GCTAGCTGCACTCGGAAGT 59.783 57.895 7.70 0.00 42.31 3.01
2310 3197 1.875813 CGCTAGCTGCACTCGGAAG 60.876 63.158 13.93 0.00 43.06 3.46
2312 3199 3.826754 CCGCTAGCTGCACTCGGA 61.827 66.667 13.93 0.00 37.86 4.55
2313 3200 4.135153 ACCGCTAGCTGCACTCGG 62.135 66.667 13.93 19.58 43.06 4.63
2355 3243 4.341806 TGAACAAAGTCAAGCACATGGATT 59.658 37.500 0.00 0.00 0.00 3.01
2359 3247 6.919662 ACTTAATGAACAAAGTCAAGCACATG 59.080 34.615 0.00 0.00 30.08 3.21
2377 3265 7.307632 CCGATCCTTGCAGAATCTAACTTAATG 60.308 40.741 0.00 0.00 0.00 1.90
2381 3269 4.446371 CCGATCCTTGCAGAATCTAACTT 58.554 43.478 0.00 0.00 0.00 2.66
2414 3302 2.476199 AGGAAAGAGACCCATCCTCAG 58.524 52.381 0.00 0.00 37.80 3.35
2494 3390 4.581824 AGTCAAAGAATTCAAGCAAGCTGA 59.418 37.500 8.44 0.00 0.00 4.26
2497 3393 5.981915 AGAAAGTCAAAGAATTCAAGCAAGC 59.018 36.000 8.44 0.00 0.00 4.01
2526 3430 4.766891 TGCCTTTTCTCTCCGATTTTTCAT 59.233 37.500 0.00 0.00 0.00 2.57
2527 3431 4.023193 GTGCCTTTTCTCTCCGATTTTTCA 60.023 41.667 0.00 0.00 0.00 2.69
2528 3432 4.216472 AGTGCCTTTTCTCTCCGATTTTTC 59.784 41.667 0.00 0.00 0.00 2.29
2533 3437 2.039084 ACAAGTGCCTTTTCTCTCCGAT 59.961 45.455 0.00 0.00 0.00 4.18
2534 3438 1.416401 ACAAGTGCCTTTTCTCTCCGA 59.584 47.619 0.00 0.00 0.00 4.55
2535 3439 1.884235 ACAAGTGCCTTTTCTCTCCG 58.116 50.000 0.00 0.00 0.00 4.63
2536 3440 3.075148 GGTACAAGTGCCTTTTCTCTCC 58.925 50.000 0.00 0.00 32.22 3.71
2537 3441 3.740115 TGGTACAAGTGCCTTTTCTCTC 58.260 45.455 8.76 0.00 36.24 3.20
2538 3442 3.857157 TGGTACAAGTGCCTTTTCTCT 57.143 42.857 8.76 0.00 36.24 3.10
2553 3457 7.147880 TGGTTAAGCTCTCTTCTCTATTGGTAC 60.148 40.741 6.19 0.00 33.85 3.34
2560 3464 5.519808 TGGATGGTTAAGCTCTCTTCTCTA 58.480 41.667 6.19 0.00 33.85 2.43
2570 3474 4.019174 CCAAACTGATGGATGGTTAAGCT 58.981 43.478 6.19 0.00 43.54 3.74
2571 3475 3.763897 ACCAAACTGATGGATGGTTAAGC 59.236 43.478 10.41 0.00 43.47 3.09
2572 3476 8.924511 ATATACCAAACTGATGGATGGTTAAG 57.075 34.615 10.41 0.00 43.47 1.85
2574 3478 9.787435 GTTATATACCAAACTGATGGATGGTTA 57.213 33.333 10.41 0.00 43.47 2.85
2575 3479 8.502738 AGTTATATACCAAACTGATGGATGGTT 58.497 33.333 10.41 0.00 43.47 3.67
2586 3490 7.253905 ACACACCTCAGTTATATACCAAACT 57.746 36.000 0.00 0.00 36.38 2.66
2587 3491 9.609346 ATTACACACCTCAGTTATATACCAAAC 57.391 33.333 0.00 0.00 0.00 2.93
2588 3492 9.607988 CATTACACACCTCAGTTATATACCAAA 57.392 33.333 0.00 0.00 0.00 3.28
2589 3493 8.208224 CCATTACACACCTCAGTTATATACCAA 58.792 37.037 0.00 0.00 0.00 3.67
2590 3494 7.565768 TCCATTACACACCTCAGTTATATACCA 59.434 37.037 0.00 0.00 0.00 3.25
2591 3495 7.959175 TCCATTACACACCTCAGTTATATACC 58.041 38.462 0.00 0.00 0.00 2.73
2592 3496 9.257651 GTTCCATTACACACCTCAGTTATATAC 57.742 37.037 0.00 0.00 0.00 1.47
2593 3497 8.139350 CGTTCCATTACACACCTCAGTTATATA 58.861 37.037 0.00 0.00 0.00 0.86
2594 3498 6.984474 CGTTCCATTACACACCTCAGTTATAT 59.016 38.462 0.00 0.00 0.00 0.86
2595 3499 6.334989 CGTTCCATTACACACCTCAGTTATA 58.665 40.000 0.00 0.00 0.00 0.98
2596 3500 5.175859 CGTTCCATTACACACCTCAGTTAT 58.824 41.667 0.00 0.00 0.00 1.89
2597 3501 4.562082 CGTTCCATTACACACCTCAGTTA 58.438 43.478 0.00 0.00 0.00 2.24
2598 3502 3.399330 CGTTCCATTACACACCTCAGTT 58.601 45.455 0.00 0.00 0.00 3.16
2599 3503 2.870435 GCGTTCCATTACACACCTCAGT 60.870 50.000 0.00 0.00 0.00 3.41
2600 3504 1.732259 GCGTTCCATTACACACCTCAG 59.268 52.381 0.00 0.00 0.00 3.35
2601 3505 1.803334 GCGTTCCATTACACACCTCA 58.197 50.000 0.00 0.00 0.00 3.86
2602 3506 0.719465 CGCGTTCCATTACACACCTC 59.281 55.000 0.00 0.00 0.00 3.85
2603 3507 0.672401 CCGCGTTCCATTACACACCT 60.672 55.000 4.92 0.00 0.00 4.00
2604 3508 1.641123 CCCGCGTTCCATTACACACC 61.641 60.000 4.92 0.00 0.00 4.16
2605 3509 1.641123 CCCCGCGTTCCATTACACAC 61.641 60.000 4.92 0.00 0.00 3.82
2606 3510 1.376166 CCCCGCGTTCCATTACACA 60.376 57.895 4.92 0.00 0.00 3.72
2607 3511 0.463116 ATCCCCGCGTTCCATTACAC 60.463 55.000 4.92 0.00 0.00 2.90
2608 3512 0.462937 CATCCCCGCGTTCCATTACA 60.463 55.000 4.92 0.00 0.00 2.41
2609 3513 0.179067 TCATCCCCGCGTTCCATTAC 60.179 55.000 4.92 0.00 0.00 1.89
2610 3514 0.762418 ATCATCCCCGCGTTCCATTA 59.238 50.000 4.92 0.00 0.00 1.90
2611 3515 0.535102 GATCATCCCCGCGTTCCATT 60.535 55.000 4.92 0.00 0.00 3.16
2612 3516 1.071471 GATCATCCCCGCGTTCCAT 59.929 57.895 4.92 0.00 0.00 3.41
2613 3517 2.504032 GATCATCCCCGCGTTCCA 59.496 61.111 4.92 0.00 0.00 3.53
2614 3518 2.436087 ATCGATCATCCCCGCGTTCC 62.436 60.000 4.92 0.00 0.00 3.62
2615 3519 0.242825 TATCGATCATCCCCGCGTTC 59.757 55.000 0.00 0.00 0.00 3.95
2616 3520 0.243907 CTATCGATCATCCCCGCGTT 59.756 55.000 0.00 0.00 0.00 4.84
2617 3521 1.595993 CCTATCGATCATCCCCGCGT 61.596 60.000 0.00 0.00 0.00 6.01
2618 3522 1.139734 CCTATCGATCATCCCCGCG 59.860 63.158 0.00 0.00 0.00 6.46
2619 3523 1.517832 CCCTATCGATCATCCCCGC 59.482 63.158 0.00 0.00 0.00 6.13
2620 3524 1.257750 TGCCCTATCGATCATCCCCG 61.258 60.000 0.00 0.00 0.00 5.73
2621 3525 0.539051 CTGCCCTATCGATCATCCCC 59.461 60.000 0.00 0.00 0.00 4.81
2622 3526 1.066573 CACTGCCCTATCGATCATCCC 60.067 57.143 0.00 0.00 0.00 3.85
2623 3527 1.895798 TCACTGCCCTATCGATCATCC 59.104 52.381 0.00 0.00 0.00 3.51
2624 3528 3.883830 ATCACTGCCCTATCGATCATC 57.116 47.619 0.00 0.00 0.00 2.92
2625 3529 3.703556 CCTATCACTGCCCTATCGATCAT 59.296 47.826 0.00 0.00 0.00 2.45
2626 3530 3.092301 CCTATCACTGCCCTATCGATCA 58.908 50.000 0.00 0.00 0.00 2.92
2627 3531 2.159170 GCCTATCACTGCCCTATCGATC 60.159 54.545 0.00 0.00 0.00 3.69
2628 3532 1.827969 GCCTATCACTGCCCTATCGAT 59.172 52.381 2.16 2.16 0.00 3.59
2629 3533 1.257743 GCCTATCACTGCCCTATCGA 58.742 55.000 0.00 0.00 0.00 3.59
2630 3534 0.109086 CGCCTATCACTGCCCTATCG 60.109 60.000 0.00 0.00 0.00 2.92
2631 3535 0.390472 GCGCCTATCACTGCCCTATC 60.390 60.000 0.00 0.00 0.00 2.08
2632 3536 1.674057 GCGCCTATCACTGCCCTAT 59.326 57.895 0.00 0.00 0.00 2.57
2633 3537 2.507854 GGCGCCTATCACTGCCCTA 61.508 63.158 22.15 0.00 41.70 3.53
2634 3538 3.866582 GGCGCCTATCACTGCCCT 61.867 66.667 22.15 0.00 41.70 5.19
2654 3558 2.126110 GAATTTTGGGCCGGTGCG 60.126 61.111 1.90 0.00 38.85 5.34
2655 3559 2.126110 CGAATTTTGGGCCGGTGC 60.126 61.111 1.90 0.00 0.00 5.01
2656 3560 2.571231 CCGAATTTTGGGCCGGTG 59.429 61.111 1.90 0.00 37.40 4.94
2657 3561 3.378602 GCCGAATTTTGGGCCGGT 61.379 61.111 1.90 0.00 45.11 5.28
2662 3566 2.882132 GACCGGCCGAATTTTGGG 59.118 61.111 30.73 9.82 0.00 4.12
2663 3567 2.483288 CGACCGGCCGAATTTTGG 59.517 61.111 30.73 10.69 0.00 3.28
2664 3568 2.483288 CCGACCGGCCGAATTTTG 59.517 61.111 30.73 11.56 0.00 2.44
2676 3580 4.129737 TACGCTCAGCAGCCGACC 62.130 66.667 0.00 0.00 43.56 4.79
2677 3581 2.881352 GTACGCTCAGCAGCCGAC 60.881 66.667 0.00 0.00 43.56 4.79
2678 3582 4.476410 CGTACGCTCAGCAGCCGA 62.476 66.667 0.52 0.00 43.56 5.54
2679 3583 3.758088 ATCGTACGCTCAGCAGCCG 62.758 63.158 11.24 0.00 43.56 5.52
2680 3584 2.105128 ATCGTACGCTCAGCAGCC 59.895 61.111 11.24 0.00 43.56 4.85
2681 3585 2.864931 GCATCGTACGCTCAGCAGC 61.865 63.158 11.24 2.73 42.96 5.25
2682 3586 1.477826 CTGCATCGTACGCTCAGCAG 61.478 60.000 24.91 24.91 42.69 4.24
2683 3587 1.517039 CTGCATCGTACGCTCAGCA 60.517 57.895 11.24 15.53 0.00 4.41
2684 3588 1.226688 TCTGCATCGTACGCTCAGC 60.227 57.895 11.24 11.75 0.00 4.26
2685 3589 0.099613 AGTCTGCATCGTACGCTCAG 59.900 55.000 11.24 16.03 0.00 3.35
2686 3590 0.526211 AAGTCTGCATCGTACGCTCA 59.474 50.000 11.24 7.05 0.00 4.26
2687 3591 1.630148 AAAGTCTGCATCGTACGCTC 58.370 50.000 11.24 2.31 0.00 5.03
2688 3592 2.080286 AAAAGTCTGCATCGTACGCT 57.920 45.000 11.24 0.00 0.00 5.07
2689 3593 2.156891 TGAAAAAGTCTGCATCGTACGC 59.843 45.455 11.24 0.00 0.00 4.42
2690 3594 4.141680 GTTGAAAAAGTCTGCATCGTACG 58.858 43.478 9.53 9.53 0.00 3.67
2691 3595 4.084745 TCGTTGAAAAAGTCTGCATCGTAC 60.085 41.667 0.00 0.00 0.00 3.67
2692 3596 4.052608 TCGTTGAAAAAGTCTGCATCGTA 58.947 39.130 0.00 0.00 0.00 3.43
2693 3597 2.869801 TCGTTGAAAAAGTCTGCATCGT 59.130 40.909 0.00 0.00 0.00 3.73
2694 3598 3.519908 TCGTTGAAAAAGTCTGCATCG 57.480 42.857 0.00 0.00 0.00 3.84
2695 3599 5.927030 TGTATCGTTGAAAAAGTCTGCATC 58.073 37.500 0.00 0.00 0.00 3.91
2696 3600 5.940192 TGTATCGTTGAAAAAGTCTGCAT 57.060 34.783 0.00 0.00 0.00 3.96
2697 3601 5.295787 AGTTGTATCGTTGAAAAAGTCTGCA 59.704 36.000 0.00 0.00 0.00 4.41
2698 3602 5.748592 AGTTGTATCGTTGAAAAAGTCTGC 58.251 37.500 0.00 0.00 0.00 4.26
2699 3603 8.614994 AAAAGTTGTATCGTTGAAAAAGTCTG 57.385 30.769 0.00 0.00 0.00 3.51
2700 3604 7.913821 GGAAAAGTTGTATCGTTGAAAAAGTCT 59.086 33.333 0.00 0.00 0.00 3.24
2701 3605 7.913821 AGGAAAAGTTGTATCGTTGAAAAAGTC 59.086 33.333 0.00 0.00 0.00 3.01
2702 3606 7.768240 AGGAAAAGTTGTATCGTTGAAAAAGT 58.232 30.769 0.00 0.00 0.00 2.66
2703 3607 8.628882 AAGGAAAAGTTGTATCGTTGAAAAAG 57.371 30.769 0.00 0.00 0.00 2.27
2704 3608 8.865001 CAAAGGAAAAGTTGTATCGTTGAAAAA 58.135 29.630 0.00 0.00 0.00 1.94
2705 3609 8.030106 ACAAAGGAAAAGTTGTATCGTTGAAAA 58.970 29.630 0.00 0.00 36.22 2.29
2706 3610 7.540299 ACAAAGGAAAAGTTGTATCGTTGAAA 58.460 30.769 0.00 0.00 36.22 2.69
2707 3611 7.066525 AGACAAAGGAAAAGTTGTATCGTTGAA 59.933 33.333 0.00 0.00 38.07 2.69
2708 3612 6.540914 AGACAAAGGAAAAGTTGTATCGTTGA 59.459 34.615 0.00 0.00 38.07 3.18
2709 3613 6.725246 AGACAAAGGAAAAGTTGTATCGTTG 58.275 36.000 0.00 0.00 38.07 4.10
2710 3614 6.766467 AGAGACAAAGGAAAAGTTGTATCGTT 59.234 34.615 5.75 0.00 45.91 3.85
2711 3615 6.289064 AGAGACAAAGGAAAAGTTGTATCGT 58.711 36.000 5.75 0.00 45.91 3.73
2712 3616 6.787085 AGAGACAAAGGAAAAGTTGTATCG 57.213 37.500 5.75 0.00 45.91 2.92
2716 3620 8.803235 ACTTTTTAGAGACAAAGGAAAAGTTGT 58.197 29.630 6.28 0.00 41.74 3.32
2717 3621 9.290483 GACTTTTTAGAGACAAAGGAAAAGTTG 57.710 33.333 11.76 0.00 43.39 3.16
2718 3622 9.020731 TGACTTTTTAGAGACAAAGGAAAAGTT 57.979 29.630 11.76 0.00 43.39 2.66
2719 3623 8.575649 TGACTTTTTAGAGACAAAGGAAAAGT 57.424 30.769 10.66 10.66 44.97 2.66
2720 3624 9.290483 GTTGACTTTTTAGAGACAAAGGAAAAG 57.710 33.333 0.00 0.00 39.03 2.27
2721 3625 8.248253 GGTTGACTTTTTAGAGACAAAGGAAAA 58.752 33.333 0.00 0.00 34.18 2.29
2722 3626 7.394923 TGGTTGACTTTTTAGAGACAAAGGAAA 59.605 33.333 0.00 0.00 34.18 3.13
2723 3627 6.887545 TGGTTGACTTTTTAGAGACAAAGGAA 59.112 34.615 0.00 0.00 34.18 3.36
2724 3628 6.317893 GTGGTTGACTTTTTAGAGACAAAGGA 59.682 38.462 0.00 0.00 34.18 3.36
2725 3629 6.495706 GTGGTTGACTTTTTAGAGACAAAGG 58.504 40.000 0.00 0.00 34.18 3.11
2726 3630 6.192360 CGTGGTTGACTTTTTAGAGACAAAG 58.808 40.000 0.00 0.00 34.18 2.77
2727 3631 5.448089 GCGTGGTTGACTTTTTAGAGACAAA 60.448 40.000 0.00 0.00 34.18 2.83
2728 3632 4.034742 GCGTGGTTGACTTTTTAGAGACAA 59.965 41.667 0.00 0.00 0.00 3.18
2729 3633 3.558418 GCGTGGTTGACTTTTTAGAGACA 59.442 43.478 0.00 0.00 0.00 3.41
2730 3634 3.808174 AGCGTGGTTGACTTTTTAGAGAC 59.192 43.478 0.00 0.00 0.00 3.36
2731 3635 3.807622 CAGCGTGGTTGACTTTTTAGAGA 59.192 43.478 0.00 0.00 0.00 3.10
2732 3636 3.058914 CCAGCGTGGTTGACTTTTTAGAG 60.059 47.826 0.00 0.00 31.35 2.43
2733 3637 2.875933 CCAGCGTGGTTGACTTTTTAGA 59.124 45.455 0.00 0.00 31.35 2.10
2734 3638 2.875933 TCCAGCGTGGTTGACTTTTTAG 59.124 45.455 4.33 0.00 39.03 1.85
2735 3639 2.920524 TCCAGCGTGGTTGACTTTTTA 58.079 42.857 4.33 0.00 39.03 1.52
2736 3640 1.757682 TCCAGCGTGGTTGACTTTTT 58.242 45.000 4.33 0.00 39.03 1.94
2737 3641 1.757682 TTCCAGCGTGGTTGACTTTT 58.242 45.000 4.33 0.00 39.03 2.27
2738 3642 1.757682 TTTCCAGCGTGGTTGACTTT 58.242 45.000 4.33 0.00 39.03 2.66
2739 3643 1.757682 TTTTCCAGCGTGGTTGACTT 58.242 45.000 4.33 0.00 39.03 3.01
2740 3644 1.676006 CTTTTTCCAGCGTGGTTGACT 59.324 47.619 4.33 0.00 39.03 3.41
2741 3645 1.269051 CCTTTTTCCAGCGTGGTTGAC 60.269 52.381 4.33 0.00 39.03 3.18
2742 3646 1.028905 CCTTTTTCCAGCGTGGTTGA 58.971 50.000 4.33 0.00 39.03 3.18
2743 3647 0.744281 ACCTTTTTCCAGCGTGGTTG 59.256 50.000 4.33 0.00 39.03 3.77
2744 3648 2.227194 CTACCTTTTTCCAGCGTGGTT 58.773 47.619 4.33 0.00 39.03 3.67
2745 3649 1.892209 CTACCTTTTTCCAGCGTGGT 58.108 50.000 4.33 0.00 39.03 4.16
2746 3650 0.521735 GCTACCTTTTTCCAGCGTGG 59.478 55.000 0.00 0.00 39.43 4.94
2750 3654 0.803117 GGTCGCTACCTTTTTCCAGC 59.197 55.000 0.00 0.00 43.08 4.85
2751 3655 2.076863 CTGGTCGCTACCTTTTTCCAG 58.923 52.381 9.09 0.00 46.91 3.86
2752 3656 1.695242 TCTGGTCGCTACCTTTTTCCA 59.305 47.619 9.09 0.00 46.91 3.53
2753 3657 2.467566 TCTGGTCGCTACCTTTTTCC 57.532 50.000 9.09 0.00 46.91 3.13
2754 3658 3.062234 CGATTCTGGTCGCTACCTTTTTC 59.938 47.826 9.09 0.77 46.91 2.29
2755 3659 3.000727 CGATTCTGGTCGCTACCTTTTT 58.999 45.455 9.09 0.00 46.91 1.94
2756 3660 2.618053 CGATTCTGGTCGCTACCTTTT 58.382 47.619 9.09 0.00 46.91 2.27
2757 3661 1.134788 CCGATTCTGGTCGCTACCTTT 60.135 52.381 9.09 0.00 46.91 3.11
2758 3662 0.460311 CCGATTCTGGTCGCTACCTT 59.540 55.000 9.09 0.00 46.91 3.50
2759 3663 2.017559 GCCGATTCTGGTCGCTACCT 62.018 60.000 9.09 0.00 46.91 3.08
2760 3664 1.591863 GCCGATTCTGGTCGCTACC 60.592 63.158 0.00 0.00 46.98 3.18
2761 3665 0.459585 TTGCCGATTCTGGTCGCTAC 60.460 55.000 0.00 0.00 40.17 3.58
2762 3666 0.248012 TTTGCCGATTCTGGTCGCTA 59.752 50.000 0.00 0.00 40.17 4.26
2763 3667 0.392998 ATTTGCCGATTCTGGTCGCT 60.393 50.000 0.00 0.00 40.17 4.93
2764 3668 0.451783 AATTTGCCGATTCTGGTCGC 59.548 50.000 0.00 0.00 40.17 5.19
2765 3669 2.161410 TCAAATTTGCCGATTCTGGTCG 59.839 45.455 13.54 0.00 41.13 4.79
2766 3670 3.057596 TGTCAAATTTGCCGATTCTGGTC 60.058 43.478 13.54 0.00 0.00 4.02
2767 3671 2.890311 TGTCAAATTTGCCGATTCTGGT 59.110 40.909 13.54 0.00 0.00 4.00
2768 3672 3.574284 TGTCAAATTTGCCGATTCTGG 57.426 42.857 13.54 0.00 0.00 3.86
2769 3673 6.470557 AAATTGTCAAATTTGCCGATTCTG 57.529 33.333 13.61 0.00 42.97 3.02
2770 3674 6.705381 TCAAAATTGTCAAATTTGCCGATTCT 59.295 30.769 17.69 0.00 43.63 2.40
2771 3675 6.791775 GTCAAAATTGTCAAATTTGCCGATTC 59.208 34.615 17.69 0.46 43.63 2.52
2772 3676 6.293353 GGTCAAAATTGTCAAATTTGCCGATT 60.293 34.615 17.69 10.82 43.63 3.34
2773 3677 5.179182 GGTCAAAATTGTCAAATTTGCCGAT 59.821 36.000 17.69 4.65 43.63 4.18
2774 3678 4.509600 GGTCAAAATTGTCAAATTTGCCGA 59.490 37.500 17.69 2.05 43.63 5.54
2913 3818 4.235762 ACAGAGGTGCAACGCCGT 62.236 61.111 0.31 0.00 39.30 5.68
3013 3930 1.002366 GATAAGTCACAGTGCAGCGG 58.998 55.000 0.00 0.00 0.00 5.52
3325 4263 6.428159 CCCTAGCATACTAACAAAGCCTAATG 59.572 42.308 0.00 0.00 0.00 1.90
3356 4305 5.621329 GCACCAACATAAGAACACCCATAAC 60.621 44.000 0.00 0.00 0.00 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.