Multiple sequence alignment - TraesCS1D01G348800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G348800 chr1D 100.000 4347 0 0 1 4347 435298443 435294097 0.000000e+00 8028.0
1 TraesCS1D01G348800 chr1D 91.111 225 19 1 4124 4347 472906150 472906374 1.960000e-78 303.0
2 TraesCS1D01G348800 chr1D 86.066 122 15 1 3675 3796 472906029 472906148 3.530000e-26 130.0
3 TraesCS1D01G348800 chr1D 76.030 267 51 11 2383 2643 458882929 458882670 4.560000e-25 126.0
4 TraesCS1D01G348800 chr1B 89.147 1852 85 39 322 2108 588530913 588529113 0.000000e+00 2200.0
5 TraesCS1D01G348800 chr1B 96.151 1325 42 5 3031 4347 588517950 588516627 0.000000e+00 2156.0
6 TraesCS1D01G348800 chr1B 91.237 388 26 4 2229 2614 588529068 588528687 4.980000e-144 521.0
7 TraesCS1D01G348800 chr1B 96.311 244 7 1 2792 3035 588526541 588526300 2.440000e-107 399.0
8 TraesCS1D01G348800 chr1B 88.768 276 26 2 51 324 588624808 588624536 2.510000e-87 333.0
9 TraesCS1D01G348800 chr1B 91.111 225 19 1 4124 4347 657406298 657406522 1.960000e-78 303.0
10 TraesCS1D01G348800 chr1B 98.065 155 3 0 2640 2794 588528386 588528232 1.990000e-68 270.0
11 TraesCS1D01G348800 chr1B 86.066 122 15 2 3675 3796 657406177 657406296 3.530000e-26 130.0
12 TraesCS1D01G348800 chr1B 86.842 114 14 1 2453 2565 451069264 451069151 4.560000e-25 126.0
13 TraesCS1D01G348800 chr1B 82.051 117 17 3 283 396 172250430 172250315 3.580000e-16 97.1
14 TraesCS1D01G348800 chr1A 90.524 992 52 17 1261 2230 532809301 532808330 0.000000e+00 1273.0
15 TraesCS1D01G348800 chr1A 94.752 705 27 4 3653 4347 532798001 532797297 0.000000e+00 1088.0
16 TraesCS1D01G348800 chr1A 95.719 654 24 3 2528 3180 532808032 532807382 0.000000e+00 1050.0
17 TraesCS1D01G348800 chr1A 94.545 495 16 2 3175 3659 532807256 532806763 0.000000e+00 754.0
18 TraesCS1D01G348800 chr1A 91.304 437 25 9 838 1268 532810543 532810114 6.260000e-163 584.0
19 TraesCS1D01G348800 chr1A 90.459 283 18 4 2230 2508 532808297 532808020 8.880000e-97 364.0
20 TraesCS1D01G348800 chr1A 80.706 425 67 8 282 696 532811638 532811219 2.520000e-82 316.0
21 TraesCS1D01G348800 chr1A 100.000 28 0 0 728 755 301207843 301207870 8.000000e-03 52.8
22 TraesCS1D01G348800 chr7B 85.060 502 50 8 3175 3675 746274599 746275076 5.050000e-134 488.0
23 TraesCS1D01G348800 chr7B 85.060 502 50 11 3175 3675 746489416 746489893 5.050000e-134 488.0
24 TraesCS1D01G348800 chr7B 83.235 507 54 15 3175 3678 744663263 744662785 1.860000e-118 436.0
25 TraesCS1D01G348800 chr7B 91.964 224 17 1 4124 4346 253699649 253699426 3.260000e-81 313.0
26 TraesCS1D01G348800 chr7B 91.518 224 15 2 4124 4346 718362065 718361845 5.460000e-79 305.0
27 TraesCS1D01G348800 chr7B 84.783 276 28 11 1697 1964 253706971 253706702 9.270000e-67 265.0
28 TraesCS1D01G348800 chr7B 85.915 213 23 5 3175 3384 253702004 253701796 2.040000e-53 220.0
29 TraesCS1D01G348800 chr7B 87.037 54 7 0 567 620 636651272 636651325 1.310000e-05 62.1
30 TraesCS1D01G348800 chr7A 81.996 561 66 20 2646 3179 717082364 717082916 1.110000e-120 444.0
31 TraesCS1D01G348800 chr7A 91.071 224 19 1 4124 4346 316021930 316021707 7.070000e-78 302.0
32 TraesCS1D01G348800 chr7A 86.081 273 25 10 1697 1963 316030518 316030253 9.200000e-72 281.0
33 TraesCS1D01G348800 chr7A 85.385 130 15 4 2438 2565 144652699 144652572 9.810000e-27 132.0
34 TraesCS1D01G348800 chr7A 82.105 95 14 3 564 657 626890118 626890026 1.300000e-10 78.7
35 TraesCS1D01G348800 chrUn 90.634 331 23 4 3794 4118 363863289 363863617 2.400000e-117 433.0
36 TraesCS1D01G348800 chrUn 89.021 337 20 5 3797 4118 430358626 430358292 6.770000e-108 401.0
37 TraesCS1D01G348800 chrUn 87.647 340 25 7 3794 4118 354743566 354743903 3.170000e-101 379.0
38 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 45896465 45896412 2.770000e-17 100.0
39 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 81292911 81292858 2.770000e-17 100.0
40 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 89028773 89028720 2.770000e-17 100.0
41 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 98208948 98209001 2.770000e-17 100.0
42 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 99642126 99642073 2.770000e-17 100.0
43 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 162247565 162247512 2.770000e-17 100.0
44 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 353416258 353416311 2.770000e-17 100.0
45 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 355159404 355159351 2.770000e-17 100.0
46 TraesCS1D01G348800 chrUn 100.000 54 0 0 1 54 389663837 389663890 2.770000e-17 100.0
47 TraesCS1D01G348800 chr2D 90.663 332 21 5 3794 4118 196967092 196967420 2.400000e-117 433.0
48 TraesCS1D01G348800 chr2D 90.634 331 23 4 3794 4118 272805012 272805340 2.400000e-117 433.0
49 TraesCS1D01G348800 chr2D 78.261 115 14 8 242 352 499735073 499735180 3.630000e-06 63.9
50 TraesCS1D01G348800 chr2D 100.000 28 0 0 568 595 578006569 578006596 8.000000e-03 52.8
51 TraesCS1D01G348800 chr3D 88.529 340 22 5 3794 4118 589252922 589253259 3.150000e-106 396.0
52 TraesCS1D01G348800 chr5B 88.415 328 29 5 3797 4118 432873383 432873059 1.900000e-103 387.0
53 TraesCS1D01G348800 chr5B 88.933 253 26 2 3185 3435 709422308 709422560 1.170000e-80 311.0
54 TraesCS1D01G348800 chr5B 87.912 91 6 1 3558 3643 709422622 709422712 7.690000e-18 102.0
55 TraesCS1D01G348800 chr5B 85.000 60 4 4 563 620 655139840 655139784 6.070000e-04 56.5
56 TraesCS1D01G348800 chr7D 93.488 215 13 1 4124 4337 279740400 279740614 7.020000e-83 318.0
57 TraesCS1D01G348800 chr7D 92.093 215 13 2 4124 4337 621644011 621644222 2.540000e-77 300.0
58 TraesCS1D01G348800 chr7D 86.131 274 25 10 1697 1964 279732068 279732334 2.560000e-72 283.0
59 TraesCS1D01G348800 chr7D 85.446 213 24 5 3175 3384 279738485 279738693 9.470000e-52 215.0
60 TraesCS1D01G348800 chr7D 79.279 222 40 5 2367 2584 25493986 25494205 2.710000e-32 150.0
61 TraesCS1D01G348800 chr7D 93.243 74 5 0 3102 3175 632655243 632655170 4.600000e-20 110.0
62 TraesCS1D01G348800 chr7D 78.723 141 27 2 252 389 569702517 569702377 1.660000e-14 91.6
63 TraesCS1D01G348800 chr7D 74.286 175 41 2 197 371 111462594 111462764 2.170000e-08 71.3
64 TraesCS1D01G348800 chr4A 90.043 231 22 1 3175 3404 605666682 605666452 9.140000e-77 298.0
65 TraesCS1D01G348800 chr4A 91.005 189 15 2 3464 3651 605666455 605666268 2.010000e-63 254.0
66 TraesCS1D01G348800 chr4A 90.647 139 8 3 3042 3175 605666949 605666811 3.450000e-41 180.0
67 TraesCS1D01G348800 chr4A 75.964 337 40 19 1290 1621 605667737 605667437 7.580000e-28 135.0
68 TraesCS1D01G348800 chr4A 79.817 109 19 2 284 390 605623142 605623035 4.660000e-10 76.8
69 TraesCS1D01G348800 chr4A 88.636 44 5 0 719 762 547516532 547516575 2.000000e-03 54.7
70 TraesCS1D01G348800 chr2B 81.557 244 29 8 1724 1963 781775297 781775528 2.060000e-43 187.0
71 TraesCS1D01G348800 chr2B 79.592 245 33 8 1724 1963 782125227 782124995 4.500000e-35 159.0
72 TraesCS1D01G348800 chr5D 89.726 146 14 1 3175 3319 557182972 557182827 7.420000e-43 185.0
73 TraesCS1D01G348800 chr5D 81.183 186 30 4 2425 2608 55732357 55732539 1.260000e-30 145.0
74 TraesCS1D01G348800 chr5D 89.167 120 8 3 3061 3175 557183220 557183101 1.260000e-30 145.0
75 TraesCS1D01G348800 chr5D 77.707 157 18 13 564 717 543227423 543227281 3.600000e-11 80.5
76 TraesCS1D01G348800 chr6A 79.457 258 40 11 2371 2622 499208534 499208784 2.080000e-38 171.0
77 TraesCS1D01G348800 chr6A 87.619 105 11 2 248 350 496193641 496193745 2.120000e-23 121.0
78 TraesCS1D01G348800 chr5A 83.077 130 19 2 2440 2566 435247629 435247758 9.880000e-22 115.0
79 TraesCS1D01G348800 chr6D 92.000 50 4 0 2568 2617 356733877 356733926 2.170000e-08 71.3
80 TraesCS1D01G348800 chr6D 88.333 60 5 2 284 342 424703624 424703566 2.170000e-08 71.3
81 TraesCS1D01G348800 chr6B 93.182 44 3 0 2574 2617 538068146 538068189 1.010000e-06 65.8
82 TraesCS1D01G348800 chr6B 78.704 108 10 7 564 670 148466480 148466575 4.690000e-05 60.2
83 TraesCS1D01G348800 chr6B 100.000 29 0 0 642 670 148549881 148549909 2.000000e-03 54.7
84 TraesCS1D01G348800 chr4D 94.595 37 2 0 643 679 505324697 505324733 1.690000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G348800 chr1D 435294097 435298443 4346 True 8028.00 8028 100.000000 1 4347 1 chr1D.!!$R1 4346
1 TraesCS1D01G348800 chr1B 588516627 588517950 1323 True 2156.00 2156 96.151000 3031 4347 1 chr1B.!!$R3 1316
2 TraesCS1D01G348800 chr1B 588526300 588530913 4613 True 847.50 2200 93.690000 322 3035 4 chr1B.!!$R5 2713
3 TraesCS1D01G348800 chr1A 532797297 532798001 704 True 1088.00 1088 94.752000 3653 4347 1 chr1A.!!$R1 694
4 TraesCS1D01G348800 chr1A 532806763 532811638 4875 True 723.50 1273 90.542833 282 3659 6 chr1A.!!$R2 3377
5 TraesCS1D01G348800 chr7B 253699426 253702004 2578 True 266.50 313 88.939500 3175 4346 2 chr7B.!!$R4 1171
6 TraesCS1D01G348800 chr7A 717082364 717082916 552 False 444.00 444 81.996000 2646 3179 1 chr7A.!!$F1 533
7 TraesCS1D01G348800 chr7D 279738485 279740614 2129 False 266.50 318 89.467000 3175 4337 2 chr7D.!!$F5 1162
8 TraesCS1D01G348800 chr4A 605666268 605667737 1469 True 216.75 298 86.914750 1290 3651 4 chr4A.!!$R2 2361

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 463 0.109597 GTACGGGTAGGTGTGTCGTG 60.110 60.0 0.00 0.0 35.60 4.35 F
1331 2753 0.028242 CGTCGTCGATCTAGCTGCTT 59.972 55.0 7.79 0.0 39.71 3.91 F
2127 3628 0.116940 AATTGAACAGGGGCCATGGT 59.883 50.0 23.64 17.7 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2127 3628 0.036765 GACGTTAGCACACCCATGGA 60.037 55.000 15.22 0.00 0.00 3.41 R
2225 3728 0.110823 GACAATCGGTCACACGCAAC 60.111 55.000 0.00 0.00 46.19 4.17 R
3458 8789 1.202879 CCATAAGCCGGCTAATGGGAA 60.203 52.381 33.07 9.74 36.12 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.443185 AGTCCATTGTCAAGTTGTGAATG 57.557 39.130 16.40 16.40 38.23 2.67
23 24 4.279169 AGTCCATTGTCAAGTTGTGAATGG 59.721 41.667 26.49 26.49 42.56 3.16
24 25 4.278170 GTCCATTGTCAAGTTGTGAATGGA 59.722 41.667 28.71 28.71 45.46 3.41
25 26 5.078949 TCCATTGTCAAGTTGTGAATGGAT 58.921 37.500 28.71 7.54 43.93 3.41
26 27 5.047872 TCCATTGTCAAGTTGTGAATGGATG 60.048 40.000 28.71 15.63 43.93 3.51
27 28 5.279106 CCATTGTCAAGTTGTGAATGGATGT 60.279 40.000 27.45 0.18 43.35 3.06
28 29 6.072008 CCATTGTCAAGTTGTGAATGGATGTA 60.072 38.462 27.45 0.00 43.35 2.29
29 30 6.558771 TTGTCAAGTTGTGAATGGATGTAG 57.441 37.500 2.11 0.00 38.23 2.74
30 31 4.455533 TGTCAAGTTGTGAATGGATGTAGC 59.544 41.667 2.11 0.00 38.23 3.58
31 32 4.697352 GTCAAGTTGTGAATGGATGTAGCT 59.303 41.667 2.11 0.00 38.23 3.32
32 33 5.182001 GTCAAGTTGTGAATGGATGTAGCTT 59.818 40.000 2.11 0.00 38.23 3.74
33 34 6.371548 GTCAAGTTGTGAATGGATGTAGCTTA 59.628 38.462 2.11 0.00 38.23 3.09
34 35 6.939730 TCAAGTTGTGAATGGATGTAGCTTAA 59.060 34.615 2.11 0.00 31.51 1.85
35 36 7.446931 TCAAGTTGTGAATGGATGTAGCTTAAA 59.553 33.333 2.11 0.00 31.51 1.52
36 37 7.383102 AGTTGTGAATGGATGTAGCTTAAAG 57.617 36.000 0.00 0.00 0.00 1.85
37 38 6.942576 AGTTGTGAATGGATGTAGCTTAAAGT 59.057 34.615 0.00 0.00 0.00 2.66
38 39 7.448469 AGTTGTGAATGGATGTAGCTTAAAGTT 59.552 33.333 0.00 0.00 0.00 2.66
39 40 7.377766 TGTGAATGGATGTAGCTTAAAGTTC 57.622 36.000 0.00 0.00 0.00 3.01
40 41 7.168219 TGTGAATGGATGTAGCTTAAAGTTCT 58.832 34.615 0.00 0.00 0.00 3.01
41 42 8.318412 TGTGAATGGATGTAGCTTAAAGTTCTA 58.682 33.333 0.00 0.00 0.00 2.10
42 43 8.821894 GTGAATGGATGTAGCTTAAAGTTCTAG 58.178 37.037 0.00 0.00 0.00 2.43
43 44 7.987458 TGAATGGATGTAGCTTAAAGTTCTAGG 59.013 37.037 0.00 0.00 0.00 3.02
44 45 5.671493 TGGATGTAGCTTAAAGTTCTAGGC 58.329 41.667 0.00 0.00 0.00 3.93
45 46 5.188948 TGGATGTAGCTTAAAGTTCTAGGCA 59.811 40.000 0.00 0.00 0.00 4.75
46 47 5.755861 GGATGTAGCTTAAAGTTCTAGGCAG 59.244 44.000 0.00 0.00 0.00 4.85
47 48 5.995565 TGTAGCTTAAAGTTCTAGGCAGA 57.004 39.130 0.00 0.00 0.00 4.26
48 49 6.354794 TGTAGCTTAAAGTTCTAGGCAGAA 57.645 37.500 0.00 0.00 38.49 3.02
49 50 6.398918 TGTAGCTTAAAGTTCTAGGCAGAAG 58.601 40.000 0.00 0.00 41.48 2.85
50 51 5.491323 AGCTTAAAGTTCTAGGCAGAAGT 57.509 39.130 0.00 1.56 44.72 3.01
56 57 3.604582 AGTTCTAGGCAGAAGTTCATGC 58.395 45.455 15.03 15.03 40.85 4.06
57 58 2.299993 TCTAGGCAGAAGTTCATGCG 57.700 50.000 16.15 7.38 43.49 4.73
58 59 1.550524 TCTAGGCAGAAGTTCATGCGT 59.449 47.619 19.20 19.20 43.49 5.24
59 60 2.028112 TCTAGGCAGAAGTTCATGCGTT 60.028 45.455 19.95 13.50 43.49 4.84
60 61 0.877071 AGGCAGAAGTTCATGCGTTG 59.123 50.000 16.15 3.14 43.49 4.10
61 62 0.874390 GGCAGAAGTTCATGCGTTGA 59.126 50.000 16.15 0.00 43.49 3.18
62 63 1.266718 GGCAGAAGTTCATGCGTTGAA 59.733 47.619 16.15 0.00 43.49 2.69
63 64 2.095059 GGCAGAAGTTCATGCGTTGAAT 60.095 45.455 16.15 0.00 45.77 2.57
64 65 3.166657 GCAGAAGTTCATGCGTTGAATC 58.833 45.455 5.50 1.21 45.77 2.52
65 66 3.365264 GCAGAAGTTCATGCGTTGAATCA 60.365 43.478 5.50 0.00 45.77 2.57
66 67 4.400845 CAGAAGTTCATGCGTTGAATCAG 58.599 43.478 5.50 0.00 45.77 2.90
67 68 3.438087 AGAAGTTCATGCGTTGAATCAGG 59.562 43.478 5.50 0.00 45.77 3.86
68 69 1.470098 AGTTCATGCGTTGAATCAGGC 59.530 47.619 5.33 2.06 45.77 4.85
69 70 0.447406 TTCATGCGTTGAATCAGGCG 59.553 50.000 5.24 5.24 39.44 5.52
70 71 0.673333 TCATGCGTTGAATCAGGCGT 60.673 50.000 10.02 4.67 0.00 5.68
71 72 1.006086 CATGCGTTGAATCAGGCGTA 58.994 50.000 10.02 6.80 0.00 4.42
72 73 1.599071 CATGCGTTGAATCAGGCGTAT 59.401 47.619 10.02 8.47 0.00 3.06
73 74 1.286501 TGCGTTGAATCAGGCGTATC 58.713 50.000 10.02 0.00 0.00 2.24
74 75 1.286501 GCGTTGAATCAGGCGTATCA 58.713 50.000 10.02 0.00 0.00 2.15
75 76 1.867233 GCGTTGAATCAGGCGTATCAT 59.133 47.619 10.02 0.00 0.00 2.45
76 77 3.057019 GCGTTGAATCAGGCGTATCATA 58.943 45.455 10.02 0.00 0.00 2.15
77 78 3.493129 GCGTTGAATCAGGCGTATCATAA 59.507 43.478 10.02 0.00 0.00 1.90
78 79 4.025229 GCGTTGAATCAGGCGTATCATAAA 60.025 41.667 10.02 0.00 0.00 1.40
79 80 5.670097 CGTTGAATCAGGCGTATCATAAAG 58.330 41.667 2.10 0.00 0.00 1.85
80 81 5.462068 CGTTGAATCAGGCGTATCATAAAGA 59.538 40.000 2.10 0.00 0.00 2.52
81 82 6.019075 CGTTGAATCAGGCGTATCATAAAGAA 60.019 38.462 2.10 0.00 0.00 2.52
82 83 7.348201 GTTGAATCAGGCGTATCATAAAGAAG 58.652 38.462 0.00 0.00 0.00 2.85
83 84 6.582636 TGAATCAGGCGTATCATAAAGAAGT 58.417 36.000 0.00 0.00 0.00 3.01
84 85 7.047891 TGAATCAGGCGTATCATAAAGAAGTT 58.952 34.615 0.00 0.00 0.00 2.66
85 86 7.224753 TGAATCAGGCGTATCATAAAGAAGTTC 59.775 37.037 0.00 0.00 0.00 3.01
86 87 5.972935 TCAGGCGTATCATAAAGAAGTTCA 58.027 37.500 5.50 0.00 0.00 3.18
87 88 5.810587 TCAGGCGTATCATAAAGAAGTTCAC 59.189 40.000 5.50 0.00 0.00 3.18
88 89 5.812642 CAGGCGTATCATAAAGAAGTTCACT 59.187 40.000 5.50 0.00 0.00 3.41
89 90 6.978659 CAGGCGTATCATAAAGAAGTTCACTA 59.021 38.462 5.50 0.00 0.00 2.74
90 91 7.491372 CAGGCGTATCATAAAGAAGTTCACTAA 59.509 37.037 5.50 0.00 0.00 2.24
91 92 8.038944 AGGCGTATCATAAAGAAGTTCACTAAA 58.961 33.333 5.50 0.00 0.00 1.85
92 93 8.662141 GGCGTATCATAAAGAAGTTCACTAAAA 58.338 33.333 5.50 0.00 0.00 1.52
102 103 8.851960 AAGAAGTTCACTAAAAATCGAAAACC 57.148 30.769 5.50 0.00 0.00 3.27
103 104 7.130269 AGAAGTTCACTAAAAATCGAAAACCG 58.870 34.615 5.50 0.00 40.25 4.44
104 105 6.367686 AGTTCACTAAAAATCGAAAACCGT 57.632 33.333 0.00 0.00 39.75 4.83
105 106 6.788243 AGTTCACTAAAAATCGAAAACCGTT 58.212 32.000 0.00 0.00 39.75 4.44
106 107 7.918643 AGTTCACTAAAAATCGAAAACCGTTA 58.081 30.769 0.00 0.00 39.75 3.18
107 108 8.397148 AGTTCACTAAAAATCGAAAACCGTTAA 58.603 29.630 0.00 0.00 39.75 2.01
108 109 9.172820 GTTCACTAAAAATCGAAAACCGTTAAT 57.827 29.630 0.00 0.00 39.75 1.40
111 112 9.269415 CACTAAAAATCGAAAACCGTTAATAGG 57.731 33.333 0.00 0.00 39.75 2.57
112 113 8.453320 ACTAAAAATCGAAAACCGTTAATAGGG 58.547 33.333 0.00 0.00 39.75 3.53
113 114 7.451501 AAAAATCGAAAACCGTTAATAGGGA 57.548 32.000 0.00 0.00 39.75 4.20
114 115 7.451501 AAAATCGAAAACCGTTAATAGGGAA 57.548 32.000 0.00 0.00 39.75 3.97
115 116 6.426980 AATCGAAAACCGTTAATAGGGAAC 57.573 37.500 0.00 0.00 39.75 3.62
116 117 4.892433 TCGAAAACCGTTAATAGGGAACA 58.108 39.130 5.17 0.00 39.75 3.18
117 118 5.490159 TCGAAAACCGTTAATAGGGAACAT 58.510 37.500 5.17 0.00 39.75 2.71
118 119 5.581874 TCGAAAACCGTTAATAGGGAACATC 59.418 40.000 5.17 0.00 39.75 3.06
119 120 5.501252 CGAAAACCGTTAATAGGGAACATCG 60.501 44.000 5.17 0.00 33.46 3.84
120 121 3.464111 ACCGTTAATAGGGAACATCGG 57.536 47.619 0.00 0.00 41.95 4.18
121 122 2.140717 CCGTTAATAGGGAACATCGGC 58.859 52.381 0.00 0.00 0.00 5.54
122 123 2.224209 CCGTTAATAGGGAACATCGGCT 60.224 50.000 0.00 0.00 0.00 5.52
123 124 3.057734 CGTTAATAGGGAACATCGGCTC 58.942 50.000 0.00 0.00 0.00 4.70
124 125 3.243771 CGTTAATAGGGAACATCGGCTCT 60.244 47.826 0.00 0.00 0.00 4.09
125 126 4.022589 CGTTAATAGGGAACATCGGCTCTA 60.023 45.833 0.00 0.00 0.00 2.43
126 127 5.336531 CGTTAATAGGGAACATCGGCTCTAT 60.337 44.000 0.00 0.00 0.00 1.98
127 128 6.127814 CGTTAATAGGGAACATCGGCTCTATA 60.128 42.308 0.00 0.00 0.00 1.31
128 129 7.576287 CGTTAATAGGGAACATCGGCTCTATAA 60.576 40.741 0.00 0.00 0.00 0.98
129 130 5.662674 ATAGGGAACATCGGCTCTATAAC 57.337 43.478 0.00 0.00 0.00 1.89
130 131 3.305720 AGGGAACATCGGCTCTATAACA 58.694 45.455 0.00 0.00 0.00 2.41
131 132 3.904339 AGGGAACATCGGCTCTATAACAT 59.096 43.478 0.00 0.00 0.00 2.71
132 133 4.348168 AGGGAACATCGGCTCTATAACATT 59.652 41.667 0.00 0.00 0.00 2.71
133 134 5.063880 GGGAACATCGGCTCTATAACATTT 58.936 41.667 0.00 0.00 0.00 2.32
134 135 5.531287 GGGAACATCGGCTCTATAACATTTT 59.469 40.000 0.00 0.00 0.00 1.82
135 136 6.039382 GGGAACATCGGCTCTATAACATTTTT 59.961 38.462 0.00 0.00 0.00 1.94
209 210 6.939551 TTTTCTTTACGAACCGATCTGTAG 57.060 37.500 0.00 0.00 0.00 2.74
210 211 5.633830 TTCTTTACGAACCGATCTGTAGT 57.366 39.130 0.00 0.00 0.00 2.73
211 212 5.633830 TCTTTACGAACCGATCTGTAGTT 57.366 39.130 0.00 0.00 0.00 2.24
212 213 5.396484 TCTTTACGAACCGATCTGTAGTTG 58.604 41.667 0.00 0.00 0.00 3.16
213 214 2.649331 ACGAACCGATCTGTAGTTGG 57.351 50.000 0.00 0.00 0.00 3.77
214 215 2.165167 ACGAACCGATCTGTAGTTGGA 58.835 47.619 0.00 0.00 0.00 3.53
215 216 2.758979 ACGAACCGATCTGTAGTTGGAT 59.241 45.455 0.00 0.00 0.00 3.41
216 217 3.116300 CGAACCGATCTGTAGTTGGATG 58.884 50.000 0.00 0.00 0.00 3.51
217 218 3.458189 GAACCGATCTGTAGTTGGATGG 58.542 50.000 0.00 0.00 0.00 3.51
218 219 2.467880 ACCGATCTGTAGTTGGATGGT 58.532 47.619 0.00 0.00 0.00 3.55
219 220 2.838202 ACCGATCTGTAGTTGGATGGTT 59.162 45.455 0.00 0.00 0.00 3.67
220 221 4.028131 ACCGATCTGTAGTTGGATGGTTA 58.972 43.478 0.00 0.00 0.00 2.85
221 222 4.099573 ACCGATCTGTAGTTGGATGGTTAG 59.900 45.833 0.00 0.00 0.00 2.34
222 223 4.501571 CCGATCTGTAGTTGGATGGTTAGG 60.502 50.000 0.00 0.00 0.00 2.69
223 224 4.341235 CGATCTGTAGTTGGATGGTTAGGA 59.659 45.833 0.00 0.00 0.00 2.94
224 225 5.508153 CGATCTGTAGTTGGATGGTTAGGAG 60.508 48.000 0.00 0.00 0.00 3.69
225 226 4.030913 TCTGTAGTTGGATGGTTAGGAGG 58.969 47.826 0.00 0.00 0.00 4.30
226 227 4.030913 CTGTAGTTGGATGGTTAGGAGGA 58.969 47.826 0.00 0.00 0.00 3.71
227 228 3.773119 TGTAGTTGGATGGTTAGGAGGAC 59.227 47.826 0.00 0.00 0.00 3.85
228 229 2.915869 AGTTGGATGGTTAGGAGGACA 58.084 47.619 0.00 0.00 0.00 4.02
229 230 3.256704 AGTTGGATGGTTAGGAGGACAA 58.743 45.455 0.00 0.00 0.00 3.18
230 231 3.009143 AGTTGGATGGTTAGGAGGACAAC 59.991 47.826 0.00 0.00 37.73 3.32
231 232 1.553248 TGGATGGTTAGGAGGACAACG 59.447 52.381 0.00 0.00 0.00 4.10
232 233 1.829222 GGATGGTTAGGAGGACAACGA 59.171 52.381 0.00 0.00 0.00 3.85
233 234 2.434702 GGATGGTTAGGAGGACAACGAT 59.565 50.000 0.00 0.00 0.00 3.73
234 235 3.492829 GGATGGTTAGGAGGACAACGATC 60.493 52.174 0.00 0.00 38.45 3.69
235 236 2.816411 TGGTTAGGAGGACAACGATCT 58.184 47.619 0.00 0.00 0.00 2.75
236 237 3.972133 TGGTTAGGAGGACAACGATCTA 58.028 45.455 0.00 0.00 0.00 1.98
237 238 3.698040 TGGTTAGGAGGACAACGATCTAC 59.302 47.826 0.00 0.00 0.00 2.59
238 239 3.067883 GGTTAGGAGGACAACGATCTACC 59.932 52.174 0.00 0.00 0.00 3.18
239 240 1.777941 AGGAGGACAACGATCTACCC 58.222 55.000 0.00 0.00 0.00 3.69
240 241 1.006758 AGGAGGACAACGATCTACCCA 59.993 52.381 0.00 0.00 0.00 4.51
241 242 1.829222 GGAGGACAACGATCTACCCAA 59.171 52.381 0.00 0.00 0.00 4.12
242 243 2.235402 GGAGGACAACGATCTACCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
243 244 3.259902 GAGGACAACGATCTACCCAAAC 58.740 50.000 0.00 0.00 0.00 2.93
244 245 2.635915 AGGACAACGATCTACCCAAACA 59.364 45.455 0.00 0.00 0.00 2.83
245 246 2.740447 GGACAACGATCTACCCAAACAC 59.260 50.000 0.00 0.00 0.00 3.32
246 247 2.740447 GACAACGATCTACCCAAACACC 59.260 50.000 0.00 0.00 0.00 4.16
247 248 2.081462 CAACGATCTACCCAAACACCC 58.919 52.381 0.00 0.00 0.00 4.61
248 249 1.354101 ACGATCTACCCAAACACCCA 58.646 50.000 0.00 0.00 0.00 4.51
249 250 1.278127 ACGATCTACCCAAACACCCAG 59.722 52.381 0.00 0.00 0.00 4.45
250 251 1.406887 CGATCTACCCAAACACCCAGG 60.407 57.143 0.00 0.00 0.00 4.45
254 255 4.191243 CCCAAACACCCAGGGTTC 57.809 61.111 9.12 0.00 37.81 3.62
255 256 1.231641 CCCAAACACCCAGGGTTCA 59.768 57.895 9.12 0.00 37.81 3.18
256 257 0.397816 CCCAAACACCCAGGGTTCAA 60.398 55.000 9.12 0.00 37.81 2.69
257 258 1.039856 CCAAACACCCAGGGTTCAAG 58.960 55.000 9.12 0.00 31.02 3.02
258 259 1.687996 CCAAACACCCAGGGTTCAAGT 60.688 52.381 9.12 0.00 31.02 3.16
259 260 1.681264 CAAACACCCAGGGTTCAAGTC 59.319 52.381 9.12 0.00 31.02 3.01
260 261 0.185175 AACACCCAGGGTTCAAGTCC 59.815 55.000 9.12 0.00 31.02 3.85
261 262 0.697854 ACACCCAGGGTTCAAGTCCT 60.698 55.000 9.12 0.00 31.02 3.85
262 263 1.358152 CACCCAGGGTTCAAGTCCTA 58.642 55.000 9.12 0.00 31.02 2.94
263 264 1.279271 CACCCAGGGTTCAAGTCCTAG 59.721 57.143 9.12 0.00 31.02 3.02
264 265 1.151413 ACCCAGGGTTCAAGTCCTAGA 59.849 52.381 4.76 0.00 27.29 2.43
265 266 1.555533 CCCAGGGTTCAAGTCCTAGAC 59.444 57.143 0.00 0.00 0.00 2.59
266 267 2.541466 CCAGGGTTCAAGTCCTAGACT 58.459 52.381 0.00 0.00 45.64 3.24
267 268 6.808565 ACCCAGGGTTCAAGTCCTAGACTT 62.809 50.000 4.76 4.16 42.75 3.01
278 279 4.899502 AGTCCTAGACTTGACAACAATGG 58.100 43.478 0.00 0.00 40.28 3.16
279 280 4.348168 AGTCCTAGACTTGACAACAATGGT 59.652 41.667 0.00 0.00 40.28 3.55
280 281 4.691216 GTCCTAGACTTGACAACAATGGTC 59.309 45.833 0.00 0.00 35.37 4.02
378 379 5.581085 GGCATCTGTGACGACTTAGTTAATT 59.419 40.000 0.00 0.00 0.00 1.40
428 429 2.101380 GCGGTCTCAGTCTCTCGC 59.899 66.667 0.00 0.00 36.51 5.03
455 462 1.577328 CGTACGGGTAGGTGTGTCGT 61.577 60.000 7.57 0.00 37.78 4.34
456 463 0.109597 GTACGGGTAGGTGTGTCGTG 60.110 60.000 0.00 0.00 35.60 4.35
457 464 1.865788 TACGGGTAGGTGTGTCGTGC 61.866 60.000 0.00 0.00 35.60 5.34
458 465 2.738480 GGGTAGGTGTGTCGTGCA 59.262 61.111 0.00 0.00 0.00 4.57
459 466 1.295423 GGGTAGGTGTGTCGTGCAT 59.705 57.895 0.00 0.00 0.00 3.96
460 467 1.019278 GGGTAGGTGTGTCGTGCATG 61.019 60.000 0.00 0.00 0.00 4.06
496 511 2.128035 GTGTATGTATGAGCGTCTGCC 58.872 52.381 0.00 0.00 44.31 4.85
497 512 1.068588 TGTATGTATGAGCGTCTGCCC 59.931 52.381 0.00 0.00 44.31 5.36
499 514 1.391933 ATGTATGAGCGTCTGCCCGA 61.392 55.000 0.00 0.00 44.31 5.14
547 562 5.798934 GCATCTAGGTTATGTCGGTATTACG 59.201 44.000 0.00 0.00 0.00 3.18
628 643 3.958147 CCCAGTTCACCAGGTTTTAAGTT 59.042 43.478 0.00 0.00 0.00 2.66
632 653 6.544564 CCAGTTCACCAGGTTTTAAGTTCTAA 59.455 38.462 0.00 0.00 0.00 2.10
660 681 4.816385 ACATTGGTGCTCGTATTATTCCTG 59.184 41.667 0.00 0.00 0.00 3.86
681 702 4.732784 TGCATTTATTTCAGGCTTTCGAC 58.267 39.130 0.00 0.00 0.00 4.20
689 710 1.663702 AGGCTTTCGACGGTGTTCG 60.664 57.895 0.00 0.00 45.88 3.95
692 1276 1.487231 CTTTCGACGGTGTTCGCTG 59.513 57.895 0.00 0.00 43.89 5.18
703 1287 1.118965 TGTTCGCTGAGTGGGAGGAA 61.119 55.000 0.00 0.00 38.86 3.36
706 1290 1.118965 TCGCTGAGTGGGAGGAAACA 61.119 55.000 0.00 0.00 33.51 2.83
741 1325 1.550327 ATGCCAGTTCAGTCTCTCGA 58.450 50.000 0.00 0.00 0.00 4.04
743 1327 1.686587 TGCCAGTTCAGTCTCTCGAAA 59.313 47.619 0.00 0.00 0.00 3.46
752 1336 5.582689 TCAGTCTCTCGAAAATGCTCATA 57.417 39.130 0.00 0.00 0.00 2.15
756 1340 4.505922 GTCTCTCGAAAATGCTCATAGGTG 59.494 45.833 0.00 0.00 0.00 4.00
763 1347 3.845781 AATGCTCATAGGTGTAGGGTG 57.154 47.619 0.00 0.00 0.00 4.61
764 1348 2.247699 TGCTCATAGGTGTAGGGTGT 57.752 50.000 0.00 0.00 0.00 4.16
767 1351 1.139058 CTCATAGGTGTAGGGTGTGCC 59.861 57.143 0.00 0.00 0.00 5.01
774 1358 1.373812 GTAGGGTGTGCCGAGGTTT 59.626 57.895 0.00 0.00 34.97 3.27
806 1390 8.737168 AAACAGTGTATGCTTGTGTATATCAT 57.263 30.769 0.00 0.00 0.00 2.45
827 1416 6.683715 TCATCACTTCGATTGTAGTGTGTTA 58.316 36.000 16.72 1.50 42.31 2.41
828 1417 7.149307 TCATCACTTCGATTGTAGTGTGTTAA 58.851 34.615 16.72 1.18 42.31 2.01
986 1576 6.367983 ACCTAACCAGTATACACGAGGAATA 58.632 40.000 5.50 1.33 0.00 1.75
1013 1603 1.810030 GAACCATGGACGCCGACTC 60.810 63.158 21.47 0.00 0.00 3.36
1177 1774 9.184523 CCTACTTGGGTTTGATATTGTTTGATA 57.815 33.333 0.00 0.00 0.00 2.15
1180 1777 9.034800 ACTTGGGTTTGATATTGTTTGATATGT 57.965 29.630 0.00 0.00 0.00 2.29
1198 1795 8.575736 TGATATGTTTTCCCCTTCCTCTAATA 57.424 34.615 0.00 0.00 0.00 0.98
1237 1835 7.611855 TCCCACATAGAAAAAGAGAGGAATTTC 59.388 37.037 0.00 0.00 33.13 2.17
1240 1838 6.094186 ACATAGAAAAAGAGAGGAATTTCCGC 59.906 38.462 10.88 10.88 42.75 5.54
1331 2753 0.028242 CGTCGTCGATCTAGCTGCTT 59.972 55.000 7.79 0.00 39.71 3.91
1373 2798 7.231519 CCTTTTGATTCCTTCCTAGTCAAAACT 59.768 37.037 9.76 0.00 41.29 2.66
1374 2799 7.745620 TTTGATTCCTTCCTAGTCAAAACTC 57.254 36.000 1.21 0.00 36.27 3.01
1375 2800 6.433847 TGATTCCTTCCTAGTCAAAACTCA 57.566 37.500 0.00 0.00 36.92 3.41
1376 2801 6.837312 TGATTCCTTCCTAGTCAAAACTCAA 58.163 36.000 0.00 0.00 36.92 3.02
1377 2802 7.287061 TGATTCCTTCCTAGTCAAAACTCAAA 58.713 34.615 0.00 0.00 36.92 2.69
1378 2803 7.777910 TGATTCCTTCCTAGTCAAAACTCAAAA 59.222 33.333 0.00 0.00 36.92 2.44
1379 2804 6.937436 TCCTTCCTAGTCAAAACTCAAAAC 57.063 37.500 0.00 0.00 36.92 2.43
1380 2805 5.826208 TCCTTCCTAGTCAAAACTCAAAACC 59.174 40.000 0.00 0.00 36.92 3.27
1381 2806 5.828328 CCTTCCTAGTCAAAACTCAAAACCT 59.172 40.000 0.00 0.00 36.92 3.50
1435 2860 6.739561 CGTACTTCGTTAACTCTGAACAATC 58.260 40.000 3.71 0.00 34.52 2.67
1509 2940 2.066592 TCACCCAGGGTAAACCATTCA 58.933 47.619 12.21 0.00 43.89 2.57
1514 2954 3.499563 CCCAGGGTAAACCATTCAGTTCA 60.500 47.826 0.00 0.00 43.89 3.18
1527 2968 3.228188 TCAGTTCAGGGATGCAGTTTT 57.772 42.857 0.00 0.00 0.00 2.43
1582 3028 3.504906 CCCAAGGATGATATCATGCACAC 59.495 47.826 31.28 14.43 45.59 3.82
1617 3081 1.981495 ACTCCTTCTCCTTGGTCCTTG 59.019 52.381 0.00 0.00 0.00 3.61
1769 3247 5.220548 CCACTTTACATCTCAGATTTGCTCG 60.221 44.000 0.00 0.00 0.00 5.03
1817 3301 5.939296 CCCCAACTTATTCACATTTTGCATT 59.061 36.000 0.00 0.00 0.00 3.56
1818 3302 7.102346 CCCCAACTTATTCACATTTTGCATTA 58.898 34.615 0.00 0.00 0.00 1.90
1921 3422 1.135689 GCCGTGCGATTTGAACAGAAT 60.136 47.619 0.00 0.00 0.00 2.40
1977 3478 1.447489 CCTTCGGAGCAGAGCACAG 60.447 63.158 0.00 0.00 0.00 3.66
2109 3610 3.776347 TTTTCTGTGCCGCCGGGAA 62.776 57.895 4.77 0.00 34.06 3.97
2118 3619 2.406616 CCGCCGGGAATTGAACAGG 61.407 63.158 2.18 0.00 34.06 4.00
2119 3620 2.406616 CGCCGGGAATTGAACAGGG 61.407 63.158 2.18 0.00 0.00 4.45
2120 3621 2.052104 GCCGGGAATTGAACAGGGG 61.052 63.158 2.18 0.00 0.00 4.79
2121 3622 2.052104 CCGGGAATTGAACAGGGGC 61.052 63.158 0.00 0.00 0.00 5.80
2122 3623 2.052104 CGGGAATTGAACAGGGGCC 61.052 63.158 0.00 0.00 0.00 5.80
2123 3624 1.078347 GGGAATTGAACAGGGGCCA 59.922 57.895 4.39 0.00 0.00 5.36
2124 3625 0.325577 GGGAATTGAACAGGGGCCAT 60.326 55.000 4.39 0.00 0.00 4.40
2127 3628 0.116940 AATTGAACAGGGGCCATGGT 59.883 50.000 23.64 17.70 0.00 3.55
2159 3660 6.146673 GTGTGCTAACGTCCAGTTATTTTAGT 59.853 38.462 0.00 0.00 43.64 2.24
2224 3727 6.732896 ACTATGCTAGCTAAATACCTGTGT 57.267 37.500 17.23 0.00 0.00 3.72
2225 3728 6.516718 ACTATGCTAGCTAAATACCTGTGTG 58.483 40.000 17.23 0.00 0.00 3.82
2267 3806 2.186826 GCTGTGGTGGCGTTGACTT 61.187 57.895 0.00 0.00 0.00 3.01
2298 3837 7.277981 GTGACGATGTTGGTGACTAATTATTCT 59.722 37.037 4.66 0.00 0.00 2.40
2336 3878 5.634020 GCGATAGATTATATATGGGCCGTTC 59.366 44.000 2.17 0.00 39.76 3.95
2381 3923 6.692588 AGGGGACATATGGTTGGAAAATATT 58.307 36.000 7.80 0.00 0.00 1.28
2458 4002 5.163281 TGCATTAATGGCTTGGTTTTCAT 57.837 34.783 17.02 0.00 0.00 2.57
2578 4123 0.675522 TTGATTCGGCCCTCGGTTTC 60.676 55.000 0.00 0.00 39.77 2.78
2614 4159 5.278858 TGCATTAATGACTGCATGTGAAACA 60.279 36.000 19.73 0.00 43.98 2.83
2735 4555 5.611796 TCACATGTTGAATCTTGTAGTGC 57.388 39.130 0.00 0.00 0.00 4.40
2790 4610 9.060347 TCTTCTAATTCATGTTTCTATGCCATC 57.940 33.333 0.00 0.00 0.00 3.51
3100 6643 7.394016 TCATCATTTTGCCTAACTCAGTTCTA 58.606 34.615 0.00 0.00 0.00 2.10
3152 6696 4.142600 GGGCACACTGTCACTATTTTGATC 60.143 45.833 0.00 0.00 0.00 2.92
3180 6855 9.736023 GGATTTTCTGTTCATATCGCTAATTTT 57.264 29.630 0.00 0.00 0.00 1.82
3183 6858 6.060028 TCTGTTCATATCGCTAATTTTGCC 57.940 37.500 0.00 0.00 0.00 4.52
3321 6998 5.300539 TGATTCCAAATCAAAACAACTCCGA 59.699 36.000 0.00 0.00 0.00 4.55
3452 8783 1.868713 TTCGGTGGCTTATACTCCCA 58.131 50.000 0.00 0.00 0.00 4.37
3458 8789 3.621558 GTGGCTTATACTCCCAAGCTTT 58.378 45.455 0.00 0.00 45.20 3.51
3527 8858 2.294074 TGTAAGCCGCAAAAGAACAGT 58.706 42.857 0.00 0.00 0.00 3.55
3548 8879 9.563748 AACAGTGCCTAAATGTAACTTAGTTTA 57.436 29.630 1.94 0.00 0.00 2.01
3571 8902 3.034635 TGTTGGGGTTAGTTTGCAATGT 58.965 40.909 0.00 0.00 0.00 2.71
3669 9000 3.607741 ACTCAAATGTGATCTGCCTCTG 58.392 45.455 0.00 0.00 31.85 3.35
3746 9322 5.122554 GCTACCTTTTCTAAAACAGCTCCTC 59.877 44.000 0.00 0.00 0.00 3.71
3812 9389 9.023967 CAATTTCCTTCCGAATATTCAATTGAC 57.976 33.333 20.11 0.00 28.81 3.18
3864 9441 2.833338 TCTTTGCCAAATAAGCCAGCAT 59.167 40.909 0.00 0.00 32.67 3.79
3903 9480 1.917872 AGTCTCGCAGACCTCTTTCT 58.082 50.000 11.24 0.00 46.18 2.52
3909 9486 2.762887 TCGCAGACCTCTTTCTGATGAT 59.237 45.455 4.29 0.00 45.19 2.45
3910 9487 3.196469 TCGCAGACCTCTTTCTGATGATT 59.804 43.478 4.29 0.00 45.19 2.57
3911 9488 3.937706 CGCAGACCTCTTTCTGATGATTT 59.062 43.478 4.29 0.00 45.19 2.17
3988 9568 8.352942 ACTGAATACTTGAAATTCAACAGAACC 58.647 33.333 21.96 6.39 41.50 3.62
4203 9789 3.679980 CACTAACATCGGACAGAACTTGG 59.320 47.826 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.279169 CCATTCACAACTTGACAATGGACT 59.721 41.667 20.81 0.00 39.88 3.85
1 2 4.278170 TCCATTCACAACTTGACAATGGAC 59.722 41.667 22.47 0.00 40.62 4.02
2 3 4.468713 TCCATTCACAACTTGACAATGGA 58.531 39.130 22.47 22.47 41.87 3.41
3 4 4.852134 TCCATTCACAACTTGACAATGG 57.148 40.909 20.04 20.04 39.37 3.16
4 5 5.775686 ACATCCATTCACAACTTGACAATG 58.224 37.500 0.00 3.68 32.26 2.82
5 6 6.349611 GCTACATCCATTCACAACTTGACAAT 60.350 38.462 0.00 0.00 32.26 2.71
6 7 5.048782 GCTACATCCATTCACAACTTGACAA 60.049 40.000 0.00 0.00 32.26 3.18
7 8 4.455533 GCTACATCCATTCACAACTTGACA 59.544 41.667 0.00 0.00 32.26 3.58
8 9 4.697352 AGCTACATCCATTCACAACTTGAC 59.303 41.667 0.00 0.00 32.26 3.18
9 10 4.910195 AGCTACATCCATTCACAACTTGA 58.090 39.130 0.00 0.00 0.00 3.02
10 11 5.633830 AAGCTACATCCATTCACAACTTG 57.366 39.130 0.00 0.00 0.00 3.16
11 12 7.448469 ACTTTAAGCTACATCCATTCACAACTT 59.552 33.333 0.00 0.00 0.00 2.66
12 13 6.942576 ACTTTAAGCTACATCCATTCACAACT 59.057 34.615 0.00 0.00 0.00 3.16
13 14 7.145932 ACTTTAAGCTACATCCATTCACAAC 57.854 36.000 0.00 0.00 0.00 3.32
14 15 7.665559 AGAACTTTAAGCTACATCCATTCACAA 59.334 33.333 0.00 0.00 0.00 3.33
15 16 7.168219 AGAACTTTAAGCTACATCCATTCACA 58.832 34.615 0.00 0.00 0.00 3.58
16 17 7.617041 AGAACTTTAAGCTACATCCATTCAC 57.383 36.000 0.00 0.00 0.00 3.18
17 18 7.987458 CCTAGAACTTTAAGCTACATCCATTCA 59.013 37.037 0.00 0.00 0.00 2.57
18 19 7.041712 GCCTAGAACTTTAAGCTACATCCATTC 60.042 40.741 0.00 0.00 0.00 2.67
19 20 6.768381 GCCTAGAACTTTAAGCTACATCCATT 59.232 38.462 0.00 0.00 0.00 3.16
20 21 6.126768 TGCCTAGAACTTTAAGCTACATCCAT 60.127 38.462 0.00 0.00 0.00 3.41
21 22 5.188948 TGCCTAGAACTTTAAGCTACATCCA 59.811 40.000 0.00 0.00 0.00 3.41
22 23 5.671493 TGCCTAGAACTTTAAGCTACATCC 58.329 41.667 0.00 0.00 0.00 3.51
23 24 6.574350 TCTGCCTAGAACTTTAAGCTACATC 58.426 40.000 0.00 0.00 0.00 3.06
24 25 6.546428 TCTGCCTAGAACTTTAAGCTACAT 57.454 37.500 0.00 0.00 0.00 2.29
25 26 5.995565 TCTGCCTAGAACTTTAAGCTACA 57.004 39.130 0.00 0.00 0.00 2.74
26 27 6.399743 ACTTCTGCCTAGAACTTTAAGCTAC 58.600 40.000 0.00 0.00 37.99 3.58
27 28 6.607004 ACTTCTGCCTAGAACTTTAAGCTA 57.393 37.500 0.00 0.00 37.99 3.32
28 29 5.491323 ACTTCTGCCTAGAACTTTAAGCT 57.509 39.130 0.00 0.00 37.99 3.74
29 30 5.701290 TGAACTTCTGCCTAGAACTTTAAGC 59.299 40.000 0.00 0.00 37.99 3.09
30 31 7.625185 GCATGAACTTCTGCCTAGAACTTTAAG 60.625 40.741 0.00 0.00 37.99 1.85
31 32 6.149474 GCATGAACTTCTGCCTAGAACTTTAA 59.851 38.462 0.00 0.00 37.99 1.52
32 33 5.643777 GCATGAACTTCTGCCTAGAACTTTA 59.356 40.000 0.00 0.00 37.99 1.85
33 34 4.457257 GCATGAACTTCTGCCTAGAACTTT 59.543 41.667 0.00 0.00 37.99 2.66
34 35 4.006319 GCATGAACTTCTGCCTAGAACTT 58.994 43.478 0.00 0.00 37.99 2.66
35 36 3.604582 GCATGAACTTCTGCCTAGAACT 58.395 45.455 0.00 0.00 37.99 3.01
36 37 2.349886 CGCATGAACTTCTGCCTAGAAC 59.650 50.000 0.00 0.00 37.99 3.01
37 38 2.028112 ACGCATGAACTTCTGCCTAGAA 60.028 45.455 0.00 0.00 40.53 2.10
38 39 1.550524 ACGCATGAACTTCTGCCTAGA 59.449 47.619 0.00 0.00 34.89 2.43
39 40 2.015736 ACGCATGAACTTCTGCCTAG 57.984 50.000 0.00 0.00 34.89 3.02
40 41 2.076100 CAACGCATGAACTTCTGCCTA 58.924 47.619 0.00 0.00 34.89 3.93
41 42 0.877071 CAACGCATGAACTTCTGCCT 59.123 50.000 0.00 0.00 34.89 4.75
42 43 0.874390 TCAACGCATGAACTTCTGCC 59.126 50.000 0.00 0.00 34.30 4.85
43 44 2.686558 TTCAACGCATGAACTTCTGC 57.313 45.000 0.00 4.15 43.08 4.26
51 52 0.673333 ACGCCTGATTCAACGCATGA 60.673 50.000 0.00 0.00 35.85 3.07
52 53 1.006086 TACGCCTGATTCAACGCATG 58.994 50.000 8.26 0.00 0.00 4.06
53 54 1.867233 GATACGCCTGATTCAACGCAT 59.133 47.619 8.26 2.35 0.00 4.73
54 55 1.286501 GATACGCCTGATTCAACGCA 58.713 50.000 8.26 0.00 0.00 5.24
55 56 1.286501 TGATACGCCTGATTCAACGC 58.713 50.000 8.26 2.75 0.00 4.84
56 57 5.462068 TCTTTATGATACGCCTGATTCAACG 59.538 40.000 7.09 7.09 0.00 4.10
57 58 6.844696 TCTTTATGATACGCCTGATTCAAC 57.155 37.500 0.00 0.00 0.00 3.18
58 59 7.047891 ACTTCTTTATGATACGCCTGATTCAA 58.952 34.615 0.00 0.00 0.00 2.69
59 60 6.582636 ACTTCTTTATGATACGCCTGATTCA 58.417 36.000 0.00 0.00 0.00 2.57
60 61 7.224753 TGAACTTCTTTATGATACGCCTGATTC 59.775 37.037 0.00 0.00 0.00 2.52
61 62 7.011482 GTGAACTTCTTTATGATACGCCTGATT 59.989 37.037 0.00 0.00 0.00 2.57
62 63 6.480320 GTGAACTTCTTTATGATACGCCTGAT 59.520 38.462 0.00 0.00 0.00 2.90
63 64 5.810587 GTGAACTTCTTTATGATACGCCTGA 59.189 40.000 0.00 0.00 0.00 3.86
64 65 5.812642 AGTGAACTTCTTTATGATACGCCTG 59.187 40.000 0.00 0.00 0.00 4.85
65 66 5.978814 AGTGAACTTCTTTATGATACGCCT 58.021 37.500 0.00 0.00 0.00 5.52
66 67 7.766219 TTAGTGAACTTCTTTATGATACGCC 57.234 36.000 0.00 0.00 0.00 5.68
76 77 9.297586 GGTTTTCGATTTTTAGTGAACTTCTTT 57.702 29.630 0.00 0.00 0.00 2.52
77 78 7.642586 CGGTTTTCGATTTTTAGTGAACTTCTT 59.357 33.333 0.00 0.00 42.43 2.52
78 79 7.130269 CGGTTTTCGATTTTTAGTGAACTTCT 58.870 34.615 0.00 0.00 42.43 2.85
79 80 6.908820 ACGGTTTTCGATTTTTAGTGAACTTC 59.091 34.615 0.00 0.00 42.43 3.01
80 81 6.788243 ACGGTTTTCGATTTTTAGTGAACTT 58.212 32.000 0.00 0.00 42.43 2.66
81 82 6.367686 ACGGTTTTCGATTTTTAGTGAACT 57.632 33.333 0.00 0.00 42.43 3.01
82 83 8.545749 TTAACGGTTTTCGATTTTTAGTGAAC 57.454 30.769 0.00 0.00 42.43 3.18
85 86 9.269415 CCTATTAACGGTTTTCGATTTTTAGTG 57.731 33.333 0.00 0.00 42.43 2.74
86 87 8.453320 CCCTATTAACGGTTTTCGATTTTTAGT 58.547 33.333 0.00 0.00 42.43 2.24
87 88 8.667463 TCCCTATTAACGGTTTTCGATTTTTAG 58.333 33.333 0.00 0.00 42.43 1.85
88 89 8.558973 TCCCTATTAACGGTTTTCGATTTTTA 57.441 30.769 0.00 0.00 42.43 1.52
89 90 7.451501 TCCCTATTAACGGTTTTCGATTTTT 57.548 32.000 0.00 0.00 42.43 1.94
90 91 7.040548 TGTTCCCTATTAACGGTTTTCGATTTT 60.041 33.333 0.00 0.00 42.43 1.82
91 92 6.430616 TGTTCCCTATTAACGGTTTTCGATTT 59.569 34.615 0.00 0.00 42.43 2.17
92 93 5.939296 TGTTCCCTATTAACGGTTTTCGATT 59.061 36.000 0.00 0.00 42.43 3.34
93 94 5.490159 TGTTCCCTATTAACGGTTTTCGAT 58.510 37.500 0.00 0.00 42.43 3.59
94 95 4.892433 TGTTCCCTATTAACGGTTTTCGA 58.108 39.130 0.00 0.00 42.43 3.71
95 96 5.501252 CGATGTTCCCTATTAACGGTTTTCG 60.501 44.000 0.00 0.00 45.88 3.46
96 97 5.220719 CCGATGTTCCCTATTAACGGTTTTC 60.221 44.000 0.00 0.00 35.40 2.29
97 98 4.637091 CCGATGTTCCCTATTAACGGTTTT 59.363 41.667 0.00 0.00 35.40 2.43
98 99 4.193865 CCGATGTTCCCTATTAACGGTTT 58.806 43.478 0.00 0.00 35.40 3.27
99 100 3.800531 CCGATGTTCCCTATTAACGGTT 58.199 45.455 0.00 0.00 35.40 4.44
100 101 2.484241 GCCGATGTTCCCTATTAACGGT 60.484 50.000 0.00 0.00 40.95 4.83
101 102 2.140717 GCCGATGTTCCCTATTAACGG 58.859 52.381 0.00 0.00 41.63 4.44
102 103 3.057734 GAGCCGATGTTCCCTATTAACG 58.942 50.000 0.00 0.00 0.00 3.18
103 104 4.338379 AGAGCCGATGTTCCCTATTAAC 57.662 45.455 0.00 0.00 0.00 2.01
104 105 7.233962 TGTTATAGAGCCGATGTTCCCTATTAA 59.766 37.037 0.00 0.00 0.00 1.40
105 106 6.722590 TGTTATAGAGCCGATGTTCCCTATTA 59.277 38.462 0.00 0.00 0.00 0.98
106 107 5.542635 TGTTATAGAGCCGATGTTCCCTATT 59.457 40.000 0.00 0.00 0.00 1.73
107 108 5.084519 TGTTATAGAGCCGATGTTCCCTAT 58.915 41.667 0.00 0.00 0.00 2.57
108 109 4.476297 TGTTATAGAGCCGATGTTCCCTA 58.524 43.478 0.00 0.00 0.00 3.53
109 110 3.305720 TGTTATAGAGCCGATGTTCCCT 58.694 45.455 0.00 0.00 0.00 4.20
110 111 3.746045 TGTTATAGAGCCGATGTTCCC 57.254 47.619 0.00 0.00 0.00 3.97
111 112 6.619801 AAAATGTTATAGAGCCGATGTTCC 57.380 37.500 0.00 0.00 0.00 3.62
185 186 6.925165 ACTACAGATCGGTTCGTAAAGAAAAA 59.075 34.615 3.18 0.00 41.10 1.94
186 187 6.449698 ACTACAGATCGGTTCGTAAAGAAAA 58.550 36.000 3.18 0.00 41.10 2.29
187 188 6.017400 ACTACAGATCGGTTCGTAAAGAAA 57.983 37.500 3.18 0.00 41.10 2.52
188 189 5.633830 ACTACAGATCGGTTCGTAAAGAA 57.366 39.130 3.18 0.00 36.31 2.52
189 190 5.396484 CAACTACAGATCGGTTCGTAAAGA 58.604 41.667 3.18 0.00 0.00 2.52
190 191 4.561606 CCAACTACAGATCGGTTCGTAAAG 59.438 45.833 3.18 0.00 0.00 1.85
191 192 4.218200 TCCAACTACAGATCGGTTCGTAAA 59.782 41.667 3.18 0.00 0.00 2.01
192 193 3.758023 TCCAACTACAGATCGGTTCGTAA 59.242 43.478 3.18 0.00 0.00 3.18
193 194 3.346315 TCCAACTACAGATCGGTTCGTA 58.654 45.455 3.18 0.00 0.00 3.43
194 195 2.165167 TCCAACTACAGATCGGTTCGT 58.835 47.619 3.18 0.00 0.00 3.85
195 196 2.933495 TCCAACTACAGATCGGTTCG 57.067 50.000 3.18 0.00 0.00 3.95
196 197 3.118738 ACCATCCAACTACAGATCGGTTC 60.119 47.826 3.18 0.00 0.00 3.62
197 198 2.838202 ACCATCCAACTACAGATCGGTT 59.162 45.455 3.18 0.00 0.00 4.44
198 199 2.467880 ACCATCCAACTACAGATCGGT 58.532 47.619 3.43 3.43 0.00 4.69
199 200 3.543680 AACCATCCAACTACAGATCGG 57.456 47.619 0.00 0.00 0.00 4.18
200 201 4.341235 TCCTAACCATCCAACTACAGATCG 59.659 45.833 0.00 0.00 0.00 3.69
201 202 5.221541 CCTCCTAACCATCCAACTACAGATC 60.222 48.000 0.00 0.00 0.00 2.75
202 203 4.656112 CCTCCTAACCATCCAACTACAGAT 59.344 45.833 0.00 0.00 0.00 2.90
203 204 4.030913 CCTCCTAACCATCCAACTACAGA 58.969 47.826 0.00 0.00 0.00 3.41
204 205 4.030913 TCCTCCTAACCATCCAACTACAG 58.969 47.826 0.00 0.00 0.00 2.74
205 206 3.773119 GTCCTCCTAACCATCCAACTACA 59.227 47.826 0.00 0.00 0.00 2.74
206 207 3.773119 TGTCCTCCTAACCATCCAACTAC 59.227 47.826 0.00 0.00 0.00 2.73
207 208 4.069312 TGTCCTCCTAACCATCCAACTA 57.931 45.455 0.00 0.00 0.00 2.24
208 209 2.915869 TGTCCTCCTAACCATCCAACT 58.084 47.619 0.00 0.00 0.00 3.16
209 210 3.344515 GTTGTCCTCCTAACCATCCAAC 58.655 50.000 0.00 0.00 0.00 3.77
210 211 2.027561 CGTTGTCCTCCTAACCATCCAA 60.028 50.000 0.00 0.00 0.00 3.53
211 212 1.553248 CGTTGTCCTCCTAACCATCCA 59.447 52.381 0.00 0.00 0.00 3.41
212 213 1.829222 TCGTTGTCCTCCTAACCATCC 59.171 52.381 0.00 0.00 0.00 3.51
213 214 3.385111 AGATCGTTGTCCTCCTAACCATC 59.615 47.826 0.00 0.00 0.00 3.51
214 215 3.375699 AGATCGTTGTCCTCCTAACCAT 58.624 45.455 0.00 0.00 0.00 3.55
215 216 2.816411 AGATCGTTGTCCTCCTAACCA 58.184 47.619 0.00 0.00 0.00 3.67
216 217 3.067883 GGTAGATCGTTGTCCTCCTAACC 59.932 52.174 0.00 0.00 0.00 2.85
217 218 3.067883 GGGTAGATCGTTGTCCTCCTAAC 59.932 52.174 0.00 0.00 0.00 2.34
218 219 3.294214 GGGTAGATCGTTGTCCTCCTAA 58.706 50.000 0.00 0.00 0.00 2.69
219 220 2.242965 TGGGTAGATCGTTGTCCTCCTA 59.757 50.000 0.00 0.00 0.00 2.94
220 221 1.006758 TGGGTAGATCGTTGTCCTCCT 59.993 52.381 0.00 0.00 0.00 3.69
221 222 1.481871 TGGGTAGATCGTTGTCCTCC 58.518 55.000 0.00 0.00 0.00 4.30
222 223 3.259902 GTTTGGGTAGATCGTTGTCCTC 58.740 50.000 0.00 0.00 0.00 3.71
223 224 2.635915 TGTTTGGGTAGATCGTTGTCCT 59.364 45.455 0.00 0.00 0.00 3.85
224 225 2.740447 GTGTTTGGGTAGATCGTTGTCC 59.260 50.000 0.00 0.00 0.00 4.02
225 226 2.740447 GGTGTTTGGGTAGATCGTTGTC 59.260 50.000 0.00 0.00 0.00 3.18
226 227 2.551504 GGGTGTTTGGGTAGATCGTTGT 60.552 50.000 0.00 0.00 0.00 3.32
227 228 2.081462 GGGTGTTTGGGTAGATCGTTG 58.919 52.381 0.00 0.00 0.00 4.10
228 229 1.700739 TGGGTGTTTGGGTAGATCGTT 59.299 47.619 0.00 0.00 0.00 3.85
229 230 1.278127 CTGGGTGTTTGGGTAGATCGT 59.722 52.381 0.00 0.00 0.00 3.73
230 231 1.406887 CCTGGGTGTTTGGGTAGATCG 60.407 57.143 0.00 0.00 0.00 3.69
231 232 1.064685 CCCTGGGTGTTTGGGTAGATC 60.065 57.143 3.97 0.00 36.32 2.75
232 233 0.999712 CCCTGGGTGTTTGGGTAGAT 59.000 55.000 3.97 0.00 36.32 1.98
233 234 2.470311 CCCTGGGTGTTTGGGTAGA 58.530 57.895 3.97 0.00 36.32 2.59
237 238 0.397816 TTGAACCCTGGGTGTTTGGG 60.398 55.000 21.38 0.00 46.07 4.12
238 239 1.039856 CTTGAACCCTGGGTGTTTGG 58.960 55.000 21.38 5.47 35.34 3.28
239 240 1.681264 GACTTGAACCCTGGGTGTTTG 59.319 52.381 21.38 12.83 35.34 2.93
240 241 1.411074 GGACTTGAACCCTGGGTGTTT 60.411 52.381 21.38 3.05 35.34 2.83
241 242 0.185175 GGACTTGAACCCTGGGTGTT 59.815 55.000 21.38 3.97 35.34 3.32
242 243 0.697854 AGGACTTGAACCCTGGGTGT 60.698 55.000 21.38 13.06 35.34 4.16
243 244 1.279271 CTAGGACTTGAACCCTGGGTG 59.721 57.143 21.38 9.42 35.34 4.61
244 245 1.151413 TCTAGGACTTGAACCCTGGGT 59.849 52.381 14.05 14.05 37.65 4.51
245 246 1.555533 GTCTAGGACTTGAACCCTGGG 59.444 57.143 12.28 12.28 34.11 4.45
246 247 2.541466 AGTCTAGGACTTGAACCCTGG 58.459 52.381 0.00 0.00 40.28 4.45
256 257 4.348168 ACCATTGTTGTCAAGTCTAGGACT 59.652 41.667 6.25 0.00 45.64 3.85
257 258 4.642429 ACCATTGTTGTCAAGTCTAGGAC 58.358 43.478 0.00 0.00 36.97 3.85
258 259 4.560716 CGACCATTGTTGTCAAGTCTAGGA 60.561 45.833 0.00 0.00 36.97 2.94
259 260 3.679980 CGACCATTGTTGTCAAGTCTAGG 59.320 47.826 0.00 0.00 36.97 3.02
260 261 4.307432 ACGACCATTGTTGTCAAGTCTAG 58.693 43.478 0.00 0.00 33.65 2.43
261 262 4.330944 ACGACCATTGTTGTCAAGTCTA 57.669 40.909 0.00 0.00 33.65 2.59
262 263 3.194005 ACGACCATTGTTGTCAAGTCT 57.806 42.857 0.00 0.00 33.65 3.24
263 264 5.607119 AATACGACCATTGTTGTCAAGTC 57.393 39.130 0.00 0.00 39.81 3.01
264 265 6.385649 AAAATACGACCATTGTTGTCAAGT 57.614 33.333 0.00 0.00 39.81 3.16
265 266 7.113404 CAGAAAAATACGACCATTGTTGTCAAG 59.887 37.037 0.00 0.00 39.81 3.02
266 267 6.915300 CAGAAAAATACGACCATTGTTGTCAA 59.085 34.615 0.00 0.00 39.81 3.18
267 268 6.261158 TCAGAAAAATACGACCATTGTTGTCA 59.739 34.615 0.00 0.00 39.81 3.58
268 269 6.664515 TCAGAAAAATACGACCATTGTTGTC 58.335 36.000 0.00 0.00 39.81 3.18
269 270 6.627395 TCAGAAAAATACGACCATTGTTGT 57.373 33.333 0.00 0.00 42.00 3.32
270 271 8.519492 AATTCAGAAAAATACGACCATTGTTG 57.481 30.769 0.00 0.00 0.00 3.33
304 305 1.398390 GAAAGCACATCGCCGAAAGAT 59.602 47.619 0.00 0.00 44.04 2.40
313 314 3.320626 TCTTCTCACTGAAAGCACATCG 58.679 45.455 0.00 0.00 37.60 3.84
428 429 1.432251 CTACCCGTACGAGCACCTG 59.568 63.158 18.76 0.00 0.00 4.00
455 462 0.735978 CACCTCTACGAACGCATGCA 60.736 55.000 19.57 0.00 0.00 3.96
456 463 0.457853 TCACCTCTACGAACGCATGC 60.458 55.000 7.91 7.91 0.00 4.06
457 464 1.135373 ACTCACCTCTACGAACGCATG 60.135 52.381 0.00 0.00 0.00 4.06
458 465 1.135373 CACTCACCTCTACGAACGCAT 60.135 52.381 0.00 0.00 0.00 4.73
459 466 0.240145 CACTCACCTCTACGAACGCA 59.760 55.000 0.00 0.00 0.00 5.24
460 467 0.240411 ACACTCACCTCTACGAACGC 59.760 55.000 0.00 0.00 0.00 4.84
547 562 3.371285 GGTTCGCACTCTTTACTGAATCC 59.629 47.826 0.00 0.00 0.00 3.01
628 643 4.890088 ACGAGCACCAATGTAAGTTTAGA 58.110 39.130 0.00 0.00 0.00 2.10
632 653 7.012044 GGAATAATACGAGCACCAATGTAAGTT 59.988 37.037 0.00 0.00 0.00 2.66
660 681 3.786048 CGTCGAAAGCCTGAAATAAATGC 59.214 43.478 0.00 0.00 0.00 3.56
681 702 2.738521 CCCACTCAGCGAACACCG 60.739 66.667 0.00 0.00 42.21 4.94
689 710 2.206576 AATGTTTCCTCCCACTCAGC 57.793 50.000 0.00 0.00 0.00 4.26
692 1276 3.146847 ACGAAAATGTTTCCTCCCACTC 58.853 45.455 0.00 0.00 0.00 3.51
703 1287 4.342772 GCATAGCAATCGACGAAAATGTT 58.657 39.130 0.00 2.57 0.00 2.71
706 1290 2.942376 TGGCATAGCAATCGACGAAAAT 59.058 40.909 0.00 0.00 0.00 1.82
741 1325 4.018415 ACACCCTACACCTATGAGCATTTT 60.018 41.667 0.00 0.00 0.00 1.82
743 1327 3.115390 ACACCCTACACCTATGAGCATT 58.885 45.455 0.00 0.00 0.00 3.56
752 1336 2.203728 TCGGCACACCCTACACCT 60.204 61.111 0.00 0.00 0.00 4.00
756 1340 0.609662 TAAACCTCGGCACACCCTAC 59.390 55.000 0.00 0.00 0.00 3.18
763 1347 4.612943 TGTTTCAAAATAAACCTCGGCAC 58.387 39.130 0.00 0.00 38.35 5.01
764 1348 4.339814 ACTGTTTCAAAATAAACCTCGGCA 59.660 37.500 0.00 0.00 38.35 5.69
767 1351 7.060633 GCATACACTGTTTCAAAATAAACCTCG 59.939 37.037 0.00 0.00 38.35 4.63
774 1358 7.711846 ACACAAGCATACACTGTTTCAAAATA 58.288 30.769 0.00 0.00 0.00 1.40
806 1390 7.956420 AATTAACACACTACAATCGAAGTGA 57.044 32.000 19.21 0.00 44.79 3.41
835 1424 5.399858 CGGTCTCGTATCTCTTTTCTGAAA 58.600 41.667 0.00 0.00 0.00 2.69
836 1425 4.674623 GCGGTCTCGTATCTCTTTTCTGAA 60.675 45.833 0.00 0.00 38.89 3.02
958 1548 3.696051 TCGTGTATACTGGTTAGGTCACC 59.304 47.826 4.17 0.00 37.34 4.02
986 1576 0.104304 GTCCATGGTTCGTATCGGCT 59.896 55.000 12.58 0.00 0.00 5.52
1177 1774 5.433381 AGCTATTAGAGGAAGGGGAAAACAT 59.567 40.000 0.00 0.00 0.00 2.71
1180 1777 6.402981 AAAGCTATTAGAGGAAGGGGAAAA 57.597 37.500 0.00 0.00 0.00 2.29
1237 1835 1.064060 GATCGATGGAAAAACTGGCGG 59.936 52.381 0.54 0.00 0.00 6.13
1240 1838 2.351726 GACGGATCGATGGAAAAACTGG 59.648 50.000 0.54 0.00 0.00 4.00
1306 2725 0.503539 CTAGATCGACGACGGACGAG 59.496 60.000 19.81 4.28 43.01 4.18
1331 2753 1.768684 AAGGAGGCGCAGAAACTGGA 61.769 55.000 10.83 0.00 31.21 3.86
1373 2798 2.247358 GCAAATCAGGGGAGGTTTTGA 58.753 47.619 0.00 0.00 30.69 2.69
1374 2799 1.969923 TGCAAATCAGGGGAGGTTTTG 59.030 47.619 0.00 0.00 0.00 2.44
1375 2800 2.397044 TGCAAATCAGGGGAGGTTTT 57.603 45.000 0.00 0.00 0.00 2.43
1376 2801 2.460669 GATGCAAATCAGGGGAGGTTT 58.539 47.619 0.00 0.00 0.00 3.27
1377 2802 1.342374 GGATGCAAATCAGGGGAGGTT 60.342 52.381 0.00 0.00 0.00 3.50
1378 2803 0.259938 GGATGCAAATCAGGGGAGGT 59.740 55.000 0.00 0.00 0.00 3.85
1379 2804 0.259647 TGGATGCAAATCAGGGGAGG 59.740 55.000 0.00 0.00 0.00 4.30
1380 2805 1.688772 CTGGATGCAAATCAGGGGAG 58.311 55.000 0.00 0.00 0.00 4.30
1381 2806 0.396139 GCTGGATGCAAATCAGGGGA 60.396 55.000 13.63 0.00 42.31 4.81
1435 2860 7.041098 AGCTCTTGGTGAATAAACTTGTGTTAG 60.041 37.037 0.00 0.00 34.96 2.34
1527 2968 2.233922 CGAGGGGCTCTAGTTTCAGAAA 59.766 50.000 0.00 0.00 0.00 2.52
1543 2984 0.106894 GGGAAGGAAGCATACGAGGG 59.893 60.000 0.00 0.00 0.00 4.30
1582 3028 3.516981 AGGAGTCATGACTTGTGATCG 57.483 47.619 28.46 0.00 42.66 3.69
1617 3081 1.228657 AAAGCGCCCTCTGTCGAAAC 61.229 55.000 2.29 0.00 0.00 2.78
1769 3247 4.792528 TGCATTGCTTTTAAACTGTTGC 57.207 36.364 10.49 0.00 0.00 4.17
1817 3301 8.218488 AGTCTCCATCCTACACGCATATATATA 58.782 37.037 0.00 0.00 0.00 0.86
1818 3302 7.063593 AGTCTCCATCCTACACGCATATATAT 58.936 38.462 0.00 0.00 0.00 0.86
1921 3422 7.445121 CCTGATTGGTTGCTTCAGTATAGATA 58.555 38.462 0.00 0.00 36.06 1.98
2067 3568 2.935238 GCGTTAGTTCCCAAGCATGAGA 60.935 50.000 0.00 0.00 0.00 3.27
2109 3610 0.324645 GACCATGGCCCCTGTTCAAT 60.325 55.000 13.04 0.00 0.00 2.57
2122 3623 0.255604 TAGCACACCCATGGACCATG 59.744 55.000 25.27 25.27 41.10 3.66
2123 3624 0.998928 TTAGCACACCCATGGACCAT 59.001 50.000 15.22 0.00 0.00 3.55
2124 3625 0.037590 GTTAGCACACCCATGGACCA 59.962 55.000 15.22 0.00 0.00 4.02
2127 3628 0.036765 GACGTTAGCACACCCATGGA 60.037 55.000 15.22 0.00 0.00 3.41
2199 3702 7.810282 CACACAGGTATTTAGCTAGCATAGTAG 59.190 40.741 18.83 0.66 41.93 2.57
2204 3707 5.359194 ACACACAGGTATTTAGCTAGCAT 57.641 39.130 18.83 4.24 31.93 3.79
2206 3709 4.201822 GCAACACACAGGTATTTAGCTAGC 60.202 45.833 6.62 6.62 31.93 3.42
2210 3713 2.482721 ACGCAACACACAGGTATTTAGC 59.517 45.455 0.00 0.00 0.00 3.09
2224 3727 0.812014 ACAATCGGTCACACGCAACA 60.812 50.000 0.00 0.00 0.00 3.33
2225 3728 0.110823 GACAATCGGTCACACGCAAC 60.111 55.000 0.00 0.00 46.19 4.17
2251 3787 0.678366 ACAAAGTCAACGCCACCACA 60.678 50.000 0.00 0.00 0.00 4.17
2267 3806 2.353269 GTCACCAACATCGTCACAACAA 59.647 45.455 0.00 0.00 0.00 2.83
2298 3837 2.585791 TATCGCTTCGCATGCACCCA 62.586 55.000 19.57 0.00 0.00 4.51
2315 3854 6.844388 TCCAGAACGGCCCATATATAATCTAT 59.156 38.462 0.00 0.00 33.14 1.98
2321 3863 4.841813 TCTTTCCAGAACGGCCCATATATA 59.158 41.667 0.00 0.00 33.14 0.86
2322 3864 3.650942 TCTTTCCAGAACGGCCCATATAT 59.349 43.478 0.00 0.00 33.14 0.86
2323 3865 3.042682 TCTTTCCAGAACGGCCCATATA 58.957 45.455 0.00 0.00 33.14 0.86
2324 3866 1.843851 TCTTTCCAGAACGGCCCATAT 59.156 47.619 0.00 0.00 33.14 1.78
2393 3935 6.070194 AGGCGGTTAATTAGGCATGTAGATAT 60.070 38.462 0.00 0.00 0.00 1.63
2402 3944 1.557832 AGTCAGGCGGTTAATTAGGCA 59.442 47.619 7.31 0.00 0.00 4.75
2578 4123 7.324135 GCAGTCATTAATGCAAAAACAATTTGG 59.676 33.333 10.76 0.00 42.11 3.28
2614 4159 2.344872 GGGGGTTGCTACGTCGTT 59.655 61.111 1.78 0.00 0.00 3.85
2735 4555 4.592485 ACTGAAGACACTCAAGGTACAG 57.408 45.455 0.00 0.00 0.00 2.74
2790 4610 4.418973 ACAGATTCTGATGGATGGACAG 57.581 45.455 20.33 0.00 35.18 3.51
2973 6508 4.937015 GCAACCAAATAAATGCATTGGAGT 59.063 37.500 20.24 5.95 45.14 3.85
3152 6696 5.998454 AGCGATATGAACAGAAAATCCAG 57.002 39.130 0.00 0.00 0.00 3.86
3321 6998 8.370266 TCAGTTTACTGTATATGGTACCTTGT 57.630 34.615 14.36 7.90 44.12 3.16
3416 8747 2.423538 CCGAAAGAACTGGCCCTTAATG 59.576 50.000 0.00 0.00 0.00 1.90
3452 8783 1.474330 CCGGCTAATGGGAAAAGCTT 58.526 50.000 0.00 0.00 36.48 3.74
3458 8789 1.202879 CCATAAGCCGGCTAATGGGAA 60.203 52.381 33.07 9.74 36.12 3.97
3548 8879 4.102367 ACATTGCAAACTAACCCCAACATT 59.898 37.500 1.71 0.00 0.00 2.71
3571 8902 5.990386 TGTTACTGTAACTTAATGGTCGCAA 59.010 36.000 25.91 3.91 39.38 4.85
3669 9000 6.681777 ACAAAATACATCTTGTGGAAAGCTC 58.318 36.000 0.00 0.00 34.52 4.09
3864 9441 4.128643 ACTTTTGGGAAAACGTCGACATA 58.871 39.130 17.16 0.00 0.00 2.29
3926 9506 4.002906 ACGGAGACTTGCTTCACATTTA 57.997 40.909 0.00 0.00 0.00 1.40
3988 9568 9.639601 GATTTATGGTTAAAGAAGAAAACAGGG 57.360 33.333 0.00 0.00 31.07 4.45
4099 9679 7.543947 TTGCAATGTGTGTATGAGATTAGAG 57.456 36.000 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.